RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14281
         (171 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 91.3 bits (226), Expect = 5e-25
 Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 53  LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKH 112
           +++    S+++ +   LR+ +  TDV +    +  +AHK VL ACS  F ++  +   ++
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 113 --PIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
              I +  ++  +    +L+FMY   +N+ +  + + + TA  L+++ + + 
Sbjct: 63  LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 114


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 87.8 bits (217), Expect = 1e-23
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 3/110 (2%)

Query: 53  LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKH 112
           L+     + ++     +R   +  DV +  + Q   AH+ VL+  S  F+          
Sbjct: 6   LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE---ILFHRNS 62

Query: 113 PIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
               L  +  K    ILE+ Y   +    + L   L  A+ L+I+ L E 
Sbjct: 63  QHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112


>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein
           beta subunit {Oxytricha nova [TaxId: 200597]}
          Length = 216

 Score = 27.0 bits (59), Expect = 1.2
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 101 FKTLLEE--NPSKHPIIILKDVPFKHLTDILEFMYAG-----EVNVSQDQLPSFLKTADR 153
           FK  L+E  NP+++P+ + +D  FK  T I  F +          V  D L    K AD 
Sbjct: 113 FKPNLQERLNPTRYPVNLFRDDEFK--TTIQHFRHTALQAAINKTVKGDNLVDISKVADA 170

Query: 154 LKIKGLAEA 162
              KG  +A
Sbjct: 171 AGKKGKVDA 179


>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein
           (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
          Length = 145

 Score = 26.1 bits (57), Expect = 1.7
 Identities = 3/27 (11%), Positives = 11/27 (40%)

Query: 2   AEKSPEDVRQILSYYKQFSDPLENFRD 28
             +    + +++  + +  +  E F D
Sbjct: 99  EPEILASLDELIGRWAKEREAGEGFGD 125


>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV
           [TaxId: 11047]}
          Length = 198

 Score = 25.7 bits (56), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 83  EGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDV 120
            G+   A  + LS+ S +F   L   P   P  I+ DV
Sbjct: 143 SGKLLGADTVTLSSLSKHFTGPLTSIPKDIPDNIIADV 180


>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 401

 Score = 25.5 bits (54), Expect = 4.4
 Identities = 11/98 (11%), Positives = 26/98 (26%)

Query: 5   SPEDVRQILSYYKQFSDPLENFRDSQRKLPELPEISKTKMNGEQQQYYLKWNDFQSNMVT 64
            P  ++Q+L+      D   ++      +   P      +      Y       +  +  
Sbjct: 39  DPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVENMFTAYGPNHRKLRRLVAP 98

Query: 65  SFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFK 102
           +F   R D     V     G   +  ++         +
Sbjct: 99  AFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQ 136


>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia
          coli [TaxId: 562]}
          Length = 149

 Score = 24.0 bits (52), Expect = 7.7
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 3  EKSPEDVRQILSYYKQFSDPLENFRDSQRKLPELPEISKT---KMNGEQQQYYLKWNDFQ 59
            + E +R   +   Q+ D         ++LP LP+  K    ++ G + + +L +   +
Sbjct: 14 TVTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVAE 73

Query: 60 SN 61
          + 
Sbjct: 74 NG 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,649
Number of extensions: 27263
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 11
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.1 bits)