BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14282
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E GP+P L+++ + +KDR N + Y +TGQG ADNP F I TG +
Sbjct: 12 PIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQG--ADNPPQGVFRIEWETGWM 66
Query: 113 F 113
Sbjct: 67 L 67
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 16 YELTLVASDSLNEN---KTTVVIHINDVNDMPPVFNTSLYPAIMEE-------------- 58
Y LT+ A+D + +I I D ND P+F+ Y A++ E
Sbjct: 193 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTD 252
Query: 59 -ELPG-PYPHSLLKVLATDGD-----KDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGE 111
++PG P ++ K+ +G D ++N T +G+D + I E
Sbjct: 253 LDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAE 312
Query: 112 IFFAPL 117
F PL
Sbjct: 313 PFSVPL 318
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 28 ENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVLATDGDKDRQN---N 83
E+ ++I + D ND P F ++ ++ME LPG S+++V ATD D D
Sbjct: 89 EDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPG---TSVMEVTATDADDDVNTYNAA 145
Query: 84 IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
I Y + Q D + P + F INR TG I
Sbjct: 146 IAYTILSQ--DPELPDKNMFTINRNTGVI 172
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E GP+P +L+++ + +KD++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQG--ADTPPVGVFIIERETG 58
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E GP+P L+++ + +KDR N + Y +TGQG ADNP F I TG +
Sbjct: 161 PIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQG--ADNPPQGVFRIEWETGWM 215
Query: 113 F 113
Sbjct: 216 L 216
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 16 YELTLVASDSLNEN---KTTVVIHINDVNDMPPVFNTSLYPAIMEE-------------- 58
Y LT+ A+D + +I I D ND P+F+ Y A++ E
Sbjct: 342 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTD 401
Query: 59 -ELPG-PYPHSLLKVLATDGD-----KDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGE 111
++PG P ++ K+ +G D ++N T +G+D + I E
Sbjct: 402 LDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAE 461
Query: 112 IFFAPL 117
F PL
Sbjct: 462 PFSVPL 467
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 74 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 130
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 131 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 171
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 10 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 57
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 77 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 133
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 134 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 174
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 13 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 60
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 77 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 133
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 134 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 174
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 13 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 60
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 16 YELTLVASDSLNENKTT---VVIHINDVNDMPPVFNTS 50
Y L + A+D E +T VI + D+ND PVFN S
Sbjct: 189 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 75 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 131
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 132 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEEGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 75 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 131
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 132 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEEGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 75 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 131
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 132 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 75 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 131
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 132 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
P E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 6 PISCPENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 16 YELTLVASDSLNENKTT---VVIHINDVNDMPPVFNTSLY 52
Y L + A+D E +T VI + D+ND PVFN S Y
Sbjct: 187 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY 226
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 75 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 131
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 132 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 75 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 131
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 132 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 75 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT---SVMKVS 131
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 132 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 76 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 132
Query: 73 ATDGDKDRQN---NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 133 ATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 173
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 12 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 59
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 28 ENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVLATDGDKDRQN---N 83
E+ +VI + D ND P F ++ ++ E +PG S++KV ATD D D
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVSATDADDDVNTYNAA 145
Query: 84 IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
I Y + Q D + P + F +NR TG I
Sbjct: 146 IAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
P + E GP+P +L+++ + +KD++ + Y +TGQG AD P F I R TG
Sbjct: 7 PISLPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQG--ADTPPVGVFIIERETG 59
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 33 VVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVLATDGDKDRQN---NIVYFL 88
+VI + D ND P F ++ ++ E +PG S++KV ATD D D I Y +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 89 TGQGIDADNPGNSKFDINRTTGEI 112
Q D + P + F +NR TG I
Sbjct: 151 VSQ--DPELPHKNMFTVNRDTGVI 172
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
P + E GP+P +L+++ + +KD++ + Y +TGQG AD P F I R TG
Sbjct: 7 PISLPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQG--ADTPPVGVFIIERETG 59
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 45 PVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFD 104
P+ + + P E GP+P +L+++ + +KD++ + Y +TGQG AD P F
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQG--ADTPPVGVFI 56
Query: 105 INRTTG 110
I R TG
Sbjct: 57 IERETG 62
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 45 PVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFD 104
P+ + + P E GP+P +L+++ + +KD++ + Y +TGQG AD P F
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQG--ADTPPVGVFI 56
Query: 105 INRTTG 110
I R TG
Sbjct: 57 IERETG 62
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
+ P ++ E P+P + KV+ D DR + LTG+G+D D G F IN TG
Sbjct: 5 VSPILIPENQRQPFPRDVGKVV----DSDRPEGSKFRLTGKGVDQDPKGT--FRINENTG 58
Query: 111 EI 112
+
Sbjct: 59 SV 60
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
+ P ++ E P+P + KV+ D DR + LTG+G+D D G F IN TG
Sbjct: 5 VSPILIPENQRQPFPRDVGKVV----DSDRPEGSKFRLTGKGVDQDPKGT--FRINENTG 58
Query: 111 EI 112
+
Sbjct: 59 SV 60
>pdb|2OMW|B Chain B, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 105
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 45 PVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFD 104
P+ + + P E G +P +L+++ + ++D++ + Y +TGQG AD P F
Sbjct: 2 PLGSWVIPPISCPENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFI 56
Query: 105 INRTTG 110
I R TG
Sbjct: 57 IERETG 62
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
E G +P +L+++ + ++D++ + Y +TGQG AD P F I R TG
Sbjct: 13 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQG--ADKPPVGVFIIERETG 60
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYP-AIMEEELPGPYPHSLLKVL 72
++Y + ++ E+ +VI + D ND P F ++ ++ E +PG S++KV
Sbjct: 77 ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKVS 133
Query: 73 ATDGDKD 79
ATD D D
Sbjct: 134 ATDADDD 140
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E GP+P L+++ + D+D+ ++ Y +TG G AD P F IN +G++
Sbjct: 6 PINLPENSRGPFPQELVRIRS---DRDKNLSLRYSVTGPG--ADQPPTGIFIINPISGQL 60
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 28 ENKTTVVIHINDVNDMPPVFNTSLY-PAIMEEELPGPYPHSLLKVLATDGDKDRQNN--I 84
EN +VI++ D+ND P F ++ ++ E PG Y ++ V A D D N +
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY---VMTVTAIDADDPNALNGML 145
Query: 85 VYFLTGQGIDADNPGNSKFDINRTTGEIF 113
Y + Q P + F IN TG+I
Sbjct: 146 RYRILSQA--PSTPSPNMFTINNETGDII 172
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E GP+P L+++ + D+D+ ++ Y +TG G AD P F IN +G++
Sbjct: 6 PINLPENSRGPFPQELVRIRS---DRDKNLSLRYSVTGPG--ADQPPTGIFIINPISGQL 60
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 28 ENKTTVVIHINDVNDMPPVFNTSLY-PAIMEEELPGPYPHSLLKVLATDGDKDRQNN--I 84
EN +VI++ D+ND P F ++ ++ E PG Y ++ V A D D N +
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY---VMTVTAIDADDPNALNGML 145
Query: 85 VYFLTGQGIDADNPGNSKFDINRTTGEIF 113
Y + Q P + F IN TG+I
Sbjct: 146 RYRIVSQA--PSTPSPNMFTINNETGDII 172
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E GP+P L+++ + D+D+ ++ Y +TG G AD P F IN +G++
Sbjct: 6 PINLPENSRGPFPQELVRIRS---DRDKNLSLRYSVTGPG--ADQPPTGIFIINPISGQL 60
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 28 ENKTTVVIHINDVNDMPPVFNTSLY-PAIMEEELPGPYPHSLLKVLATDGDKDRQNN--I 84
EN +VI++ D+ND P F ++ ++ E PG Y ++ V A D D N +
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY---VMTVTAIDADDPNALNGML 145
Query: 85 VYFLTGQGIDADNPGNSKFDINRTTGEIF 113
Y + Q P + F IN TG+I
Sbjct: 146 RYRILSQA--PSTPSPNMFTINNETGDII 172
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
+ P ++ E P+P + KV+ D DR + LTG+G+D + G F IN TG
Sbjct: 4 VSPILIPENQRQPFPRDVGKVV----DSDRPERSKFRLTGKGVDQEPKG--IFRINENTG 57
Query: 111 EI 112
+
Sbjct: 58 SV 59
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P ++ E P+P S+ KV+ ++G + + + L+G+G+D D G F IN +G++
Sbjct: 6 PILIPENQRPPFPRSVGKVIRSEGTEGAK----FRLSGKGVDQDPKG--IFRINEISGDV 59
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P ++ E P+P S+ KV+ ++G + + + L+G+G+D D G F IN +G++
Sbjct: 6 PILIPENQRPPFPRSVGKVIRSEGTEGAK----FRLSGKGVDQDPKG--IFRINEISGDV 59
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 15 IYELTLVASDSLNENKTTV--VIHINDVNDMPPVFNTSLYPAI-MEEELPGPYPHSLLKV 71
+Y L + A++ T+V I + DVND P F Y A ++E++ P S+L+V
Sbjct: 290 VYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDI--PLGTSILRV 347
Query: 72 LATDGDKDRQNNIVYFLTGQGIDADNPG 99
A D D I Y ++ D+ G
Sbjct: 348 KAMDSDSGSNAEIEYLVSDDHFAVDSNG 375
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 33 VVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQG 92
V+I + DVND PP F P +L P + + A D D D +NI YF+
Sbjct: 97 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD--HNIHYFIV--- 151
Query: 93 IDADNPGNSKFDINRTTG 110
D G +F+++ +G
Sbjct: 152 --RDRTG-GRFEVDERSG 166
>pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 364
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 35 IHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKV--LATDGDKDRQNN 83
I+IN+ N MP S+YP + E + YP + K+ LA + +D+Q N
Sbjct: 302 IYINETNAMPGFTAFSMYPKLW-ENMGLSYPELITKLIELAKERHQDKQKN 351
>pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
Length = 364
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 35 IHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKV--LATDGDKDRQNN 83
I+IN+ N MP S+YP + E + YP + K+ LA + +D+Q N
Sbjct: 302 IYINETNAMPGFTAFSMYPKLW-ENMGLSYPELITKLIELAKERHQDKQKN 351
>pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 360
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 35 IHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKV--LATDGDKDRQNN 83
I+IN+ N MP S+YP + E + YP + K+ LA + +D+Q N
Sbjct: 302 IYINETNAMPGFTAFSMYPKLW-ENMGLSYPELITKLIELAKERHQDKQKN 351
>pdb|3TQT|A Chain A, Structure Of The D-Alanine-D-Alanine Ligase From Coxiella
Burnetii
pdb|3TQT|B Chain B, Structure Of The D-Alanine-D-Alanine Ligase From Coxiella
Burnetii
Length = 372
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 37 INDVNDMPPVFNTSLYPAIMEEE-LPGPYPHSLLKVLATDGDKDRQNNI 84
+N++N +P N S+YP + E LP P L LA D +++Q I
Sbjct: 314 VNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDRHQEQQKLI 362
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 3 LYPPGTSNLPTLIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPG 62
L P T + +I + A +N+ V+I + DVND PP F P +L
Sbjct: 63 LGPEKTIDFWVIITNMGHNAGIKYTDNQR-VIILVKDVNDEPPYFINRPLPMQAVVQLNA 121
Query: 63 PYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
P + + A D D D +NI YF+ D G +F+++ +G
Sbjct: 122 PPNTPVFTLQARDPDTD--HNIHYFIV-----RDRTG-GRFEVDERSG 161
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 28 ENKTTVVIHINDVNDMPPVFNTSLYPAIMEEELP-GPYPHSLLKVLATDGD 77
E ++ +I I+D+ND P+F +Y A + E G + +++V ATD D
Sbjct: 87 EPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTF---VVQVTATDAD 134
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 7 GTSNLPTLIYELTLVASDSLNEN-KTTVVIHINDV-NDMPPVFNTSLYPAIMEEELPGPY 64
G ++P ++LT++ SDSL N KT + ++++ +++ +N+ LY + + + P
Sbjct: 281 GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPS 340
Query: 65 PH 66
H
Sbjct: 341 KH 342
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 70 KVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
K+L DGDKD + FL +GI D ++ G+IF
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLA----YNCEEAIGKIF 45
>pdb|3GXB|A Chain A, Crystal Structure Of Vwf A2 Domain
pdb|3GXB|B Chain B, Crystal Structure Of Vwf A2 Domain
Length = 184
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 72 LATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPL 117
L + GD+++ N+VY +TG NP + +I R G+I P+
Sbjct: 97 LVSQGDREQAPNLVYMVTG------NPASD--EIKRLPGDIQVVPI 134
>pdb|3PPV|A Chain A, Crystal Structure Of An Engineered Vwf A2 Domain (N1493c
And C1670s)
Length = 196
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 72 LATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPL 117
L + GD+++ N+VY +TG NP + +I R G+I P+
Sbjct: 105 LVSQGDREQAPNLVYMVTG------NPASD--EIKRLPGDIQVVPI 142
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 65 PHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118
P+ ++KVLA+DG Q I Y N K N + G +F A L+
Sbjct: 21 PNKVIKVLASDGKTGEQREIAY------------TNCKVIGNGSFGVVFQAKLV 62
>pdb|3ZQK|A Chain A, Von Willebrand Factor A2 Domain With Calcium
pdb|3ZQK|B Chain B, Von Willebrand Factor A2 Domain With Calcium
pdb|3ZQK|C Chain C, Von Willebrand Factor A2 Domain With Calcium
Length = 199
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 72 LATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPL 117
L + GD+++ N+VY +TG NP + +I R G+I P+
Sbjct: 116 LVSQGDREQAPNLVYMVTG------NPASD--EIKRLPGDIQVVPI 153
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 56 MEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+ EE+ P PH + K+ ++ G+K N +Y + G+ N+ F + G+I+
Sbjct: 9 IREEIDSPLPHHVGKLTSSVGNK----NAMYIIEGE------SANTIFKVQGYDGDIY 56
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 16 YELTLVASDSLNENK----TTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKV 71
YELT D N + +I ++D+ND P+F ++ + E S+ KV
Sbjct: 69 YELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPE--MSRLGTSVTKV 126
Query: 72 LATDGD 77
A D D
Sbjct: 127 TAEDAD 132
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 34 VIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGD 77
++ + D+ND PP F +Y A + E S+++V A+D D
Sbjct: 94 IVKVQDINDNPPEFLHEIYHANVPER--SNVGTSVIQVTASDAD 135
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 43 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKF 102
Query: 114 FAPLI 118
P++
Sbjct: 103 NDPVV 107
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 19 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKF 78
Query: 114 FAPLI 118
P++
Sbjct: 79 GDPVV 83
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 19 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKF 78
Query: 114 FAPLI 118
P++
Sbjct: 79 GDPVV 83
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 19 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKF 78
Query: 114 FAPLI 118
P++
Sbjct: 79 GDPVV 83
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound And
Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg Ion-,
And K Ion- Bound State
Length = 392
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 23 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKF 82
Query: 114 FAPLI 118
P++
Sbjct: 83 GDPVV 87
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 22 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKF 81
Query: 114 FAPLI 118
P++
Sbjct: 82 GDPVV 86
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The
Apo Form
Length = 391
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 22 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKF 81
Query: 114 FAPLI 118
P++
Sbjct: 82 GDPVV 86
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 17 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKF 76
Query: 114 FAPLI 118
P++
Sbjct: 77 GDPVV 81
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a
(Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 62 GPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD--------NPGNSKFDINRTTGEIF 113
G + H ++++A D + V F + + D NP N+ FD R G F
Sbjct: 41 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKF 100
Query: 114 FAPLI 118
P++
Sbjct: 101 GDPVV 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,963,747
Number of Sequences: 62578
Number of extensions: 156637
Number of successful extensions: 414
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 92
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 45 (21.9 bits)