Query psy14282
Match_columns 119
No_of_seqs 260 out of 1149
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 15:54:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00031 CA Cadherin repeat dom 99.9 2.6E-23 5.6E-28 140.6 15.6 109 2-118 53-165 (199)
2 KOG4289|consensus 99.9 9.2E-24 2E-28 169.8 12.4 109 2-118 325-437 (2531)
3 KOG1219|consensus 99.9 3.3E-23 7.1E-28 171.0 12.9 107 2-118 2633-2741(4289)
4 KOG4289|consensus 99.9 2.7E-23 5.9E-28 167.1 8.3 109 2-118 220-332 (2531)
5 KOG1219|consensus 99.8 1.4E-20 3.1E-25 155.8 11.5 109 2-118 1009-1121(4289)
6 KOG1834|consensus 99.6 6.1E-15 1.3E-19 113.0 11.0 105 2-118 94-210 (952)
7 PF00028 Cadherin: Cadherin do 99.5 1.6E-13 3.4E-18 82.8 8.6 59 52-118 1-59 (93)
8 smart00112 CA Cadherin repeats 99.3 5.3E-12 1.2E-16 73.9 6.8 43 3-45 33-79 (79)
9 cd00031 CA Cadherin repeat dom 99.0 2E-09 4.4E-14 72.5 8.7 60 51-118 1-60 (199)
10 PF00028 Cadherin: Cadherin do 98.4 2.4E-06 5.3E-11 51.1 6.6 37 2-38 52-93 (93)
11 smart00112 CA Cadherin repeats 98.3 1.1E-06 2.4E-11 51.0 4.7 39 74-118 1-39 (79)
12 PF08266 Cadherin_2: Cadherin- 97.3 0.00016 3.4E-09 42.9 2.3 57 53-118 4-62 (84)
13 PF08758 Cadherin_pro: Cadheri 96.8 0.0027 5.9E-08 38.2 4.2 60 44-118 3-62 (90)
14 TIGR03660 T1SS_rpt_143 T1SS-14 90.4 2.5 5.4E-05 27.4 6.9 55 2-60 69-128 (137)
15 smart00736 CADG Dystroglycan-t 90.3 1.4 3.1E-05 26.3 5.5 29 14-42 67-96 (97)
16 TIGR01965 VCBS_repeat VCBS rep 84.9 5.6 0.00012 24.3 5.7 40 15-59 58-97 (99)
17 TIGR00845 caca sodium/calcium 83.1 28 0.00061 29.6 10.8 56 31-92 515-570 (928)
18 KOG1834|consensus 82.8 2.5 5.4E-05 34.3 4.3 37 3-39 204-244 (952)
19 PF03160 Calx-beta: Calx-beta 80.7 9.5 0.00021 22.6 5.9 53 34-92 2-54 (100)
20 KOG3597|consensus 78.3 14 0.00031 28.6 7.0 61 29-92 24-84 (442)
21 PF07495 Y_Y_Y: Y_Y_Y domain; 70.5 15 0.00032 19.8 4.5 24 14-37 39-65 (66)
22 smart00089 PKD Repeats in poly 68.6 18 0.0004 20.1 4.5 27 11-37 51-78 (79)
23 PF12245 Big_3_2: Bacterial Ig 58.4 28 0.00062 18.8 5.2 28 14-41 23-51 (60)
24 cd00146 PKD polycystic kidney 54.3 37 0.00081 18.9 4.2 26 11-36 53-80 (81)
25 PF03413 PepSY: Peptidase prop 53.0 24 0.00053 18.6 3.0 34 81-114 29-62 (64)
26 PF02494 HYR: HYR domain; Int 43.9 60 0.0013 18.3 3.9 22 15-36 58-80 (81)
27 PF12461 DUF3688: Protein of u 43.4 34 0.00074 20.5 2.8 25 84-114 62-86 (91)
28 COG2706 3-carboxymuconate cycl 39.4 1.7E+02 0.0036 22.2 6.3 26 34-59 214-239 (346)
29 PF14157 YmzC: YmzC-like prote 38.0 39 0.00084 18.9 2.2 19 100-118 41-59 (63)
30 cd02848 Chitinase_N_term Chiti 37.5 49 0.0011 20.5 2.8 30 9-38 74-105 (106)
31 PF05688 DUF824: Salmonella re 37.5 50 0.0011 17.2 2.5 15 29-43 13-27 (47)
32 PF09081 DUF1921: Domain of un 35.8 53 0.0011 17.2 2.4 35 80-114 13-49 (51)
33 PF13754 Big_3_4: Bacterial Ig 35.3 72 0.0016 16.8 3.3 15 14-28 24-38 (54)
34 COG4288 Uncharacterized protei 33.7 1.2E+02 0.0026 18.9 6.0 31 30-60 67-97 (124)
35 KOG4680|consensus 33.2 1.2E+02 0.0026 19.9 4.2 34 53-88 109-142 (153)
36 TIGR03786 strep_pil_rpt strept 32.0 95 0.0021 17.2 5.3 33 8-40 3-42 (64)
37 PF13750 Big_3_3: Bacterial Ig 29.8 1.7E+02 0.0036 19.2 8.7 73 14-90 15-89 (158)
38 PF07145 PAM2: Ataxin-2 C-term 29.5 32 0.0007 14.2 0.8 11 40-50 6-16 (18)
39 PF00635 Motile_Sperm: MSP (Ma 29.2 1E+02 0.0022 18.1 3.4 25 82-113 32-56 (109)
40 PF08329 ChitinaseA_N: Chitina 29.2 97 0.0021 20.0 3.3 26 14-39 83-109 (133)
41 PRK13211 N-acetylglucosamine-b 26.9 3.2E+02 0.007 21.6 6.3 27 14-40 379-407 (478)
42 PF01011 PQQ: PQQ enzyme repea 25.8 77 0.0017 15.1 2.0 16 100-115 10-25 (38)
43 COG5448 Uncharacterized conser 24.4 1.9E+02 0.0041 19.4 4.0 31 81-116 107-137 (184)
44 PF05345 He_PIG: Putative Ig d 23.7 1.2E+02 0.0026 15.6 3.6 16 99-114 12-27 (49)
45 TIGR00845 caca sodium/calcium 21.5 4.1E+02 0.0089 23.1 6.3 49 40-92 395-443 (928)
46 KOG1030|consensus 20.8 2.8E+02 0.006 18.7 5.7 41 31-79 38-78 (168)
No 1
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.92 E-value=2.6e-23 Score=140.55 Aligned_cols=109 Identities=31% Similarity=0.407 Sum_probs=99.1
Q ss_pred EEEcCCCCCCCC-ceEEEEEEEEeCCCC---ceEEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECC
Q psy14282 2 ALYPPGTSNLPT-LIYELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGD 77 (119)
Q Consensus 2 ~l~~~~~LDrE~-~~y~l~v~a~D~~~~---~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D 77 (119)
.|++.+.||||. ..|.|.|.|+|.|.+ +...+.|.|.|+|||+|.|....|.+.|.|+. ++|+.++++.|+|+|
T Consensus 53 ~l~~~~~lD~e~~~~~~l~v~a~D~g~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~--~~~~~i~~~~a~D~D 130 (199)
T cd00031 53 VITTTKPLDREEQSEYTLTVVASDGGGPPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENA--PPGTVVGTVTATDAD 130 (199)
T ss_pred EEEECCCCCCcCCceEEEEEEEEECCcCcceeEEEEEEEEccCCCCCCcccccceEEEEeCCC--CCCCEEEEEEEEcCC
Confidence 477888999999 999999999997665 68899999999999999999999999999997 899999999999999
Q ss_pred CCCCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 78 KDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 78 ~~~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
.+.++.++|+|.++. ...+|.|++.+|.|++.+.|
T Consensus 131 ~~~~~~~~y~l~~~~------~~~~f~i~~~~G~i~~~~~l 165 (199)
T cd00031 131 SGENAKLTYSILSGN------DKELFSIDPNTGIITLAKPL 165 (199)
T ss_pred CCCCccEEEEEeCCC------CCCEEEEeCCceEEEeCCcc
Confidence 988999999999864 24899999999999988643
No 2
>KOG4289|consensus
Probab=99.91 E-value=9.2e-24 Score=169.79 Aligned_cols=109 Identities=27% Similarity=0.389 Sum_probs=102.4
Q ss_pred EEEcCCCCCCCC-ceEEEEEEEEeCCCC---ceEEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECC
Q psy14282 2 ALYPPGTSNLPT-LIYELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGD 77 (119)
Q Consensus 2 ~l~~~~~LDrE~-~~y~l~v~a~D~~~~---~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D 77 (119)
.|.+..+||||+ ..|+|.|.|+|.|.+ .++.|.|+|.|.|||+|+|.+..|.+.|.|+. .+++.|++|+|+|+|
T Consensus 325 vI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edv--t~~avvlrV~AtDrD 402 (2531)
T KOG4289|consen 325 VISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDV--TPPAVVLRVTATDRD 402 (2531)
T ss_pred eeeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEEEecccC--CCCceEEEEEecccC
Confidence 367889999999 999999999999864 79999999999999999999999999999998 899999999999999
Q ss_pred CCCCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 78 KDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 78 ~~~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
.|.|+.+.|+|.+++ ..+.|.||..||+|.+..+|
T Consensus 403 ~g~Ng~VHYsi~Sgn------~~G~f~id~~tGel~vv~pl 437 (2531)
T KOG4289|consen 403 KGTNGKVHYSIASGN------GRGQFYIDSLTGELDVVEPL 437 (2531)
T ss_pred CCcCceEEEEeeccC------ccccEEEecccceEEEeccc
Confidence 999999999999988 68999999999999987765
No 3
>KOG1219|consensus
Probab=99.90 E-value=3.3e-23 Score=171.02 Aligned_cols=107 Identities=27% Similarity=0.335 Sum_probs=99.4
Q ss_pred EEEcCCCCCCCC-ceEEEEEEEEeCCC-CceEEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECCCC
Q psy14282 2 ALYPPGTSNLPT-LIYELTLVASDSLN-ENKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKD 79 (119)
Q Consensus 2 ~l~~~~~LDrE~-~~y~l~v~a~D~~~-~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D~~ 79 (119)
.|.+.++||+|+ ++|++.|.|+++++ -+...|.|.|.|+|||+|+|..+.|.+.+.||. +.|+.|++++|.|.|.|
T Consensus 2633 ~i~v~ksLD~E~kk~yqi~v~a~~~~~vva~tsv~vqVkDvNDNaPvFe~d~y~f~i~En~--pvGtsV~qf~AsD~Ds~ 2710 (4289)
T KOG1219|consen 2633 MIKVNKSLDHEKKKSYQIKVKATCGQWVVAETSVFVQVKDVNDNAPVFEKDPYLFIIEENS--PVGTSVIQFHASDMDSG 2710 (4289)
T ss_pred eEEeccccchhhhceEEEEEEeecCCceEEEEEEEEEeecccCCCccccCCceeEEEeccC--CCCceEEEEEeeccCCC
Confidence 478999999999 99999999999988 488899999999999999999999999999996 99999999999999999
Q ss_pred CCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 80 RQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 80 ~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
.||+++|++.+. ..+|.|+++||+|++...|
T Consensus 2711 ~nGqirysl~~~--------v~yF~In~etGwlTt~~el 2741 (4289)
T KOG1219|consen 2711 NNGQIRYSLTSP--------VPYFAINPETGWLTTLFEL 2741 (4289)
T ss_pred CCceEEEEEcCC--------cceEEEcCCCCeeeehhhh
Confidence 999999999974 3499999999999987543
No 4
>KOG4289|consensus
Probab=99.89 E-value=2.7e-23 Score=167.13 Aligned_cols=109 Identities=30% Similarity=0.358 Sum_probs=103.1
Q ss_pred EEEcCCCCCCCC-ceEEEEEEEEeCCCC---ceEEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECC
Q psy14282 2 ALYPPGTSNLPT-LIYELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGD 77 (119)
Q Consensus 2 ~l~~~~~LDrE~-~~y~l~v~a~D~~~~---~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D 77 (119)
.|++.+.||||. ..+.|.|.|.|.+.| ++++|+|+|.|.|||.|+|++..|..++.||. ++|..|++|+|+|.|
T Consensus 220 ~irta~~lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~--evGy~vLtvrAtD~D 297 (2531)
T KOG4289|consen 220 AIRTAKSLDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENL--EVGYEVLTVRATDGD 297 (2531)
T ss_pred cchhhhhhhhhhhheeEEEEEeeecCCCcccceeEEEEEEeecCCCCcccchhHHHHHHhhcc--ccCceEEEEEeccCC
Confidence 367889999999 999999999999987 78999999999999999999999999999997 999999999999999
Q ss_pred CCCCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 78 KDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 78 ~~~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
.+.|+.|+|++.+++ ....|.||+.+|.|.+..+|
T Consensus 298 sp~Nani~Yrl~eg~------~~~~f~in~rSGvI~T~a~l 332 (2531)
T KOG4289|consen 298 SPPNANIRYRLLEGN------AKNVFEINPRSGVISTRAPL 332 (2531)
T ss_pred CCCCCceEEEecCCC------ccceeEEcCccceeeccCcc
Confidence 999999999999986 68999999999999998765
No 5
>KOG1219|consensus
Probab=99.84 E-value=1.4e-20 Score=155.78 Aligned_cols=109 Identities=27% Similarity=0.309 Sum_probs=101.1
Q ss_pred EEEcCCCCCCCC-ceEEEEEEEEeCCCC---ceEEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECC
Q psy14282 2 ALYPPGTSNLPT-LIYELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGD 77 (119)
Q Consensus 2 ~l~~~~~LDrE~-~~y~l~v~a~D~~~~---~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D 77 (119)
.|.+.+.||||. +.|-|++.|+|.|.+ +.+.+.|.|.|+|||+|+|.++.|..+|.|+. +.+..|.++.|.|+|
T Consensus 1009 ~irTl~~lDrE~ks~YwltveA~D~gt~~~ssv~~vyI~ieDvNDn~Pq~s~pvy~asI~enS--p~~vsivq~ea~D~D 1086 (4289)
T KOG1219|consen 1009 SIRTLKALDREKKSSYWLTVEAKDLGTVPLSSVCEVYIEIEDVNDNVPQFSSPVYYASISENS--PETVSIVQAEANDPD 1086 (4289)
T ss_pred eEeechhhchhhcceEEEEEEEEecCCCccccceeEEEEEEecCCCCcccCCceEeeeeccCC--CCceEEEEeccCCCC
Confidence 367889999999 999999999999975 67899999999999999999999999999996 999999999999999
Q ss_pred CCCCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 78 KDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 78 ~~~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
...|+.+.|.|.+++ ..+.|.|++.||.|++.+.|
T Consensus 1087 sssn~kLmykI~sGn------yq~FF~Id~~TG~iTt~r~L 1121 (4289)
T KOG1219|consen 1087 SSSNQKLMYKITSGN------YQGFFQIDPETGLITTIRRL 1121 (4289)
T ss_pred cccCcceEEEEccCC------ccceEEEccccceeeeehhh
Confidence 888999999999988 68999999999999976654
No 6
>KOG1834|consensus
Probab=99.62 E-value=6.1e-15 Score=113.03 Aligned_cols=105 Identities=30% Similarity=0.384 Sum_probs=90.9
Q ss_pred EEEcCCCCCCCC-ceEEEEEEEEeCCC-C--------ceEEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEE
Q psy14282 2 ALYPPGTSNLPT-LIYELTLVASDSLN-E--------NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKV 71 (119)
Q Consensus 2 ~l~~~~~LDrE~-~~y~l~v~a~D~~~-~--------~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v 71 (119)
.|++..+||.|- +.|+|+|+|.|.|. | -.++|+|.|.|+|+++|+|..+.|.+.|.|+ ..-..|++|
T Consensus 94 vlRaK~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EG---K~yd~il~v 170 (952)
T KOG1834|consen 94 VLRAKEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEG---KVYDSILRV 170 (952)
T ss_pred EEeecCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecc---eeeeeeEEE
Confidence 367889999998 99999999999863 3 4689999999999999999999999999999 888999999
Q ss_pred EEEECCCC-CCCeE-EEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 72 LATDGDKD-RQNNI-VYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 72 ~A~D~D~~-~~~~i-~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
.|.|.|-+ .+++| .|.|.. ..-.|.||. .|.|+...+|
T Consensus 171 eAiD~DCspq~sqIC~YEI~t--------~d~PFaIdn-~G~irnTekL 210 (952)
T KOG1834|consen 171 EAIDKDCSPQYSQICEYEITT--------PDVPFAIDN-DGNIRNTEKL 210 (952)
T ss_pred EeecCCCCCcccceeEEEecC--------CCCceEEcC-CCcccccccc
Confidence 99999976 56775 788987 357899986 4888877665
No 7
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.51 E-value=1.6e-13 Score=82.80 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=54.8
Q ss_pred ccEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 52 YPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 52 y~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
|.++|+|+. ++|+.++++.|.|+|.+.|+.+.|+|.++. ...+|.|++.+|.|++.+.|
T Consensus 1 Y~~~v~E~~--~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~------~~~~F~I~~~tg~i~~~~~L 59 (93)
T PF00028_consen 1 YSFSVPENA--PPGTVVGQVTATDPDSGPNSQITYSILGGN------PDGLFSIDPNTGEISLKKPL 59 (93)
T ss_dssp EEEEEETTG--STSSEEEEEEEEESSTSTTSSEEEEEEETT------STTSEEEETTTTEEEESSSS
T ss_pred CEEEEECCC--CCCCEEEEEEEEeCCCCCCceEEEEEecCc------ccCceEEeeeeeccccceec
Confidence 789999996 899999999999999999999999999976 47899999999999999875
No 8
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=99.34 E-value=5.3e-12 Score=73.86 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=39.9
Q ss_pred EEcCCCCCCCC-ceEEEEEEEEeCCCC---ceEEEEEEEeeCCCCCC
Q psy14282 3 LYPPGTSNLPT-LIYELTLVASDSLNE---NKTTVVIHINDVNDMPP 45 (119)
Q Consensus 3 l~~~~~LDrE~-~~y~l~v~a~D~~~~---~~~~v~I~V~DvNDn~P 45 (119)
|++.++||||. +.|.|.|.|.|.|.+ +.+.|.|+|.|+|||+|
T Consensus 33 i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P 79 (79)
T smart00112 33 ITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP 79 (79)
T ss_pred EEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence 67788999999 999999999999874 78999999999999998
No 9
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.04 E-value=2e-09 Score=72.49 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=53.2
Q ss_pred CccEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 51 ~y~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
.|.+.|+|+. +.|+.++++.|+|+|.+.++.++|+|.++. ...+|.|++.+|.|++.+.|
T Consensus 1 ~~~~~i~En~--~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~------~~~~F~i~~~tG~l~~~~~l 60 (199)
T cd00031 1 SYSVSVPENA--PPGTVVGTVSATDPDSGENGRVTYSILGGN------EDGLFSIDPNTGVITTTKPL 60 (199)
T ss_pred CeEEEEeCCC--CCCCEEEEEEEECCCCCCCceEEEEEeCCC------CcccEEEeCCCCEEEECCCC
Confidence 3789999997 889999999999999988899999999865 23799999999999998754
No 10
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=98.36 E-value=2.4e-06 Score=51.09 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=31.8
Q ss_pred EEEcCCCCCCCC-ceEEEEEEEEeC-CCC---ceEEEEEEEe
Q psy14282 2 ALYPPGTSNLPT-LIYELTLVASDS-LNE---NKTTVVIHIN 38 (119)
Q Consensus 2 ~l~~~~~LDrE~-~~y~l~v~a~D~-~~~---~~~~v~I~V~ 38 (119)
.|++.++||||. +.|.|.|.|+|. |.+ +++.|.|+|.
T Consensus 52 ~i~~~~~LD~E~~~~y~l~v~a~D~~~~~~~~~~~~V~I~V~ 93 (93)
T PF00028_consen 52 EISLKKPLDRETQSSYQLTVRATDSGGSPPLSSTATVTINVL 93 (93)
T ss_dssp EEEESSSSCTTTTSEEEEEEEEEETTTSSEEEEEEEEEEEEE
T ss_pred ccccceecCcccCCEEEEEEEEEECCCCCCCEEEEEEEEEEC
Confidence 478999999999 999999999999 666 6777777764
No 11
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=98.34 E-value=1.1e-06 Score=51.02 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=33.1
Q ss_pred EECCCCCCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 74 TDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 74 ~D~D~~~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
+|+|.|.|+.++|+|.++. ...+|.|++.+|.|++.++|
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~------~~~~F~i~~~tg~i~~~~~L 39 (79)
T smart00112 1 TDADSGENGKVTYSILSGN------EDGLFSIDPETGEITTTKPL 39 (79)
T ss_pred CCCCCCcCcEEEEEEecCC------CCCEEEEeCCccEEEeCCcc
Confidence 4889999999999999865 23899999999999887654
No 12
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=97.34 E-value=0.00016 Score=42.94 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=35.1
Q ss_pred cEEEeCCCCCCCCcEEEEEEEEECCCCCC--CeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQ--NNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 53 ~~~v~E~~~~~~g~~v~~v~A~D~D~~~~--~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
..+|+|.. +.|+.|+.+ |.|.-.... ....|+|.+.. ...+|.+++.||.|+++..|
T Consensus 4 ~YsV~EE~--~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~------~~~~~~v~~~tG~L~v~~rI 62 (84)
T PF08266_consen 4 RYSVPEEM--PPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEG------NSQYFRVNEKTGDLFVSERI 62 (84)
T ss_dssp EEEEESS----TT-EEEEC-CCCCT--HHHHCCTTBEEE-SS------SS-SEEE-TTTSEEEESS--
T ss_pred EEEeecCC--CCCCEEEEh-HHhhCCCcccccccceEEeecC------CcceeEecCCceeEEeCCcc
Confidence 57899997 999999999 555432211 12367777654 47899999999999998643
No 13
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=96.82 E-value=0.0027 Score=38.15 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCeecCCCccEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcccc
Q psy14282 44 PPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 44 ~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~~L 118 (119)
.|-|.+..|.+.|+.+. ..|..|++|.-.|-.. +..+.|.-. ...|.|.++ |.|++++++
T Consensus 3 ~pGF~~~~~~~~Vp~~l--~~g~~lg~V~f~dC~~--~~~~~~~ss----------DpdF~V~~D-GsVy~~r~v 62 (90)
T PF08758_consen 3 RPGFSQKKYTFEVPSNL--EAGQPLGKVNFEDCTG--RRRVIFESS----------DPDFRVLED-GSVYAKRPV 62 (90)
T ss_dssp --B--S-EEEE----SS---SS--EEE---B--SS-----EEEE-------------SEEEEETT-TEEEEES--
T ss_pred cCCcccceEEEEcCchh--hCCcEEEEEEeccCCC--CCceEEecC----------CCCEEEcCC-CeEEEeeeE
Confidence 58899999999999997 8999999999998843 346777754 347999875 999988765
No 14
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=90.38 E-value=2.5 Score=27.37 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCC----ceEEEEEEEEeCCC-CceEEEEEEEeeCCCCCCeecCCCccEEEeCCC
Q psy14282 2 ALYPPGTSNLPT----LIYELTLVASDSLN-ENKTTVVIHINDVNDMPPVFNTSLYPAIMEEEL 60 (119)
Q Consensus 2 ~l~~~~~LDrE~----~~y~l~v~a~D~~~-~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~ 60 (119)
.+.+.++||... -...|.|.|+|..+ .+...+.|+|.| |. |+-.... ..+|.|+.
T Consensus 69 tftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~s~~~l~VtI~D--D~-P~~~~~~-~~~V~E~~ 128 (137)
T TIGR03660 69 EFTLEGPLDHAAGSDELTLNFPIIATDFDGDTSSITLPVTIVD--DV-PTITDVD-ALTVDEDD 128 (137)
T ss_pred EEEEcccccCCCCCceEEEeeeEEEEeCCCCccccEEEEEEEC--CC-Ceecccc-ceEEeccc
Confidence 456778888843 35678888998754 355688888877 54 7765543 47888863
No 15
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=90.33 E-value=1.4 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.3
Q ss_pred ceEEEEEEEEeCCC-CceEEEEEEEeeCCC
Q psy14282 14 LIYELTLVASDSLN-ENKTTVVIHINDVND 42 (119)
Q Consensus 14 ~~y~l~v~a~D~~~-~~~~~v~I~V~DvND 42 (119)
..|.+.+.|+|+.+ .....+.|.|.+.||
T Consensus 67 g~~~i~v~a~D~~g~~~~~~f~i~V~~~~~ 96 (97)
T smart00736 67 GSLSLKVTATDSSGASASDTFTITVVNTND 96 (97)
T ss_pred cEEEEEEEEEECCCCEEEEEEEEEEeCCCC
Confidence 56999999999864 467789999999887
No 16
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=84.86 E-value=5.6 Score=24.28 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=28.5
Q ss_pred eEEEEEEEEeCCCCceEEEEEEEeeCCCCCCeecCCCccEEEeCC
Q psy14282 15 IYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPAIMEEE 59 (119)
Q Consensus 15 ~y~l~v~a~D~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~ 59 (119)
.-.|++.+.|+ .+..|.|+|.-.||. |+.... -.+.+.|+
T Consensus 58 tdsFtvtv~DG---tt~~vtItI~GtNDa-pvi~~~-~~g~v~ED 97 (99)
T TIGR01965 58 TDTFTVTSADG---TSQTVTITITGANDA-AVIGGA-DTGSVTED 97 (99)
T ss_pred EEEEEEEEeCC---CeEEEEEEEEccCCC-CEEecc-cceeEecC
Confidence 34577777886 388899999999995 554433 34677776
No 17
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=83.05 E-value=28 Score=29.61 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=32.8
Q ss_pred EEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEEecCC
Q psy14282 31 TTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQG 92 (119)
Q Consensus 31 ~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~ 92 (119)
...+|+|.| ||++|.|.-..-...|.|+. |..-.+|.-+-.-.| .-.+.|...++.
T Consensus 515 s~ATVTIlD-DD~aGIfsFe~~~~sV~Es~----G~vtvtV~RtsGa~G-~VtV~Y~T~dGT 570 (928)
T TIGR00845 515 NTATVTILD-DDHAGIFTFEEDVFHVSESI----GIMEVKVLRTSGARG-TVIVPYRTVEGT 570 (928)
T ss_pred ceEEEEEec-CcccCcccccCceEEEEcCC----CEEEEEEEEcCCCCe-eEEEEEEeecCc
Confidence 355677777 88999876655567888873 544334333211111 223667777664
No 18
>KOG1834|consensus
Probab=82.77 E-value=2.5 Score=34.32 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=29.8
Q ss_pred EEcCCCCCCCC-ceEEEEEEEEeCCCC---ceEEEEEEEee
Q psy14282 3 LYPPGTSNLPT-LIYELTLVASDSLNE---NKTTVVIHIND 39 (119)
Q Consensus 3 l~~~~~LDrE~-~~y~l~v~a~D~~~~---~~~~v~I~V~D 39 (119)
|+.+.+|.|-+ .+|.|+|.|.|.|.. +-..|+|+|..
T Consensus 204 irnTekLny~ke~~Y~ltVtAyDCg~kraa~d~lV~v~Vkp 244 (952)
T KOG1834|consen 204 IRNTEKLNYTKEHQYKLTVTAYDCGKKRAASDSLVTVHVKP 244 (952)
T ss_pred cccccccccccceeEEEEEEEEecccccccCcceEEEEecC
Confidence 56678899999 999999999999875 34667777753
No 19
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=80.67 E-value=9.5 Score=22.57 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=31.9
Q ss_pred EEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEEecCC
Q psy14282 34 VIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQG 92 (119)
Q Consensus 34 ~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~ 92 (119)
+|.|.| ||.+ .+.-..-...+.|+. |..-..|.-..++....-.+.|....+.
T Consensus 2 tvtI~d-~d~~-~v~f~~~~~~v~E~~----~~~~v~V~~~~~~~~~~v~v~~~~~~gt 54 (100)
T PF03160_consen 2 TVTILD-DDDP-TVSFSSPSYTVSEGD----GTVTVTVTRSGGSLDGPVTVNYSTVDGT 54 (100)
T ss_dssp EEEEE--TTSE-EEEESSSEEEEETTS----SEEEEEEEEESS-TSSEEEEEEEEEESS
T ss_pred EEEEEC-CCCC-EEEEeCCEEEEEeCC----CEEEEEEEEcccCCCcceEEEEEEeCCc
Confidence 467777 6765 776666677888874 4445555555444333445778777654
No 20
>KOG3597|consensus
Probab=78.29 E-value=14 Score=28.62 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=44.6
Q ss_pred ceEEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEEecCC
Q psy14282 29 NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQG 92 (119)
Q Consensus 29 ~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~ 92 (119)
.+....|.|.-+||.+..+....+...+.|+. ..-.....+.+.|+|.+. ..+.|++....
T Consensus 24 ~~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~--~k~l~~~~l~~~d~d~~~-~~l~f~v~~t~ 84 (442)
T KOG3597|consen 24 QTDVLRIHVNPVNDPPSLIFPSGSLLVILEGG--QKVLDPELLTAADPDSAP-LPLEFQVLGTS 84 (442)
T ss_pred EEeeecccccccCCCcceeecccceEEeecCC--ceeccceEeeccCCCCCc-cceEEEEccCC
Confidence 45667899999999999887777778888886 222234557888888763 45888888753
No 21
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=70.48 E-value=15 Score=19.79 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=15.8
Q ss_pred ceEEEEEEEEeCCCC---ceEEEEEEE
Q psy14282 14 LIYELTLVASDSLNE---NKTTVVIHI 37 (119)
Q Consensus 14 ~~y~l~v~a~D~~~~---~~~~v~I~V 37 (119)
-.|.|.|.|.|..+. ....+.|.|
T Consensus 39 G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 39 GKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp EEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred EEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 468999999987543 235666665
No 22
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=68.58 E-value=18 Score=20.13 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=17.2
Q ss_pred CCC-ceEEEEEEEEeCCCCceEEEEEEE
Q psy14282 11 LPT-LIYELTLVASDSLNENKTTVVIHI 37 (119)
Q Consensus 11 rE~-~~y~l~v~a~D~~~~~~~~v~I~V 37 (119)
|+. ..|.+++.+.|..+..+..+.|.|
T Consensus 51 y~~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 51 YTKPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred eCCCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 344 567888888877655555555554
No 23
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=58.38 E-value=28 Score=18.84 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=19.6
Q ss_pred ceEEEEEEEEeCCCC-ceEEEEEEEeeCC
Q psy14282 14 LIYELTLVASDSLNE-NKTTVVIHINDVN 41 (119)
Q Consensus 14 ~~y~l~v~a~D~~~~-~~~~v~I~V~DvN 41 (119)
..|.+.+.+.|..+. +.......+.|..
T Consensus 23 g~yt~~v~a~D~AGN~~~~~~~~~i~d~~ 51 (60)
T PF12245_consen 23 GEYTLTVTATDKAGNTSSSTTQIVIVDNT 51 (60)
T ss_pred ccEEEEEEEEECCCCEEEeeeEEEEEcCC
Confidence 579999999998654 5555555555543
No 24
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=54.26 E-value=37 Score=18.92 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=15.2
Q ss_pred CCC-ceEEEEEEEEeCCCC-ceEEEEEE
Q psy14282 11 LPT-LIYELTLVASDSLNE-NKTTVVIH 36 (119)
Q Consensus 11 rE~-~~y~l~v~a~D~~~~-~~~~v~I~ 36 (119)
+++ ..|.+++.++|..+. ....+.|.
T Consensus 53 y~~~G~y~v~l~v~d~~g~~~~~~~~V~ 80 (81)
T cd00146 53 YTKPGTYTVTLTVTNAVGSSSTKTTTVV 80 (81)
T ss_pred cCCCcEEEEEEEEEeCCCCEEEEEEEEE
Confidence 445 678888888887433 33344443
No 25
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=53.02 E-value=24 Score=18.56 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=15.5
Q ss_pred CCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEE
Q psy14282 81 QNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFF 114 (119)
Q Consensus 81 ~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~ 114 (119)
++...|.+.-.....+....-.+.||+.||.|.-
T Consensus 29 ~~~~~Y~v~~~~~~~~~~~~~~v~VDa~tG~Il~ 62 (64)
T PF03413_consen 29 NGRLVYEVEVVSDDDPDGGEYEVYVDAYTGEILS 62 (64)
T ss_dssp TCEEEEEEEEEBTTSTTTEEEEEEEETTT--EEE
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEECCCCeEEE
Confidence 4556666653210001111234459999999863
No 26
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=43.90 E-value=60 Score=18.33 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=10.2
Q ss_pred eEEEEEEEEeCC-CCceEEEEEE
Q psy14282 15 IYELTLVASDSL-NENKTTVVIH 36 (119)
Q Consensus 15 ~y~l~v~a~D~~-~~~~~~v~I~ 36 (119)
.+.++..|+|.. +.+++.+.|+
T Consensus 58 ~t~V~ytA~D~~GN~a~C~f~V~ 80 (81)
T PF02494_consen 58 TTTVTYTATDAAGNSATCSFTVT 80 (81)
T ss_pred eEEEEEEEEECCCCEEEEEEEEE
Confidence 344555555542 2244444443
No 27
>PF12461 DUF3688: Protein of unknown function (DUF3688) ; InterPro: IPR022160 This entry is represented by Spiroplasma phage 1-C74, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This domain family is found in bacteria and viruses, and is typically between 79 and 104 amino acids in length. There is a conserved YRW sequence motif. There is a single completely conserved residue Y that may be functionally important.
Probab=43.42 E-value=34 Score=20.47 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=18.1
Q ss_pred EEEEEecCCcCCCCCCCCcEEEeCCCceEEE
Q psy14282 84 IVYFLTGQGIDADNPGNSKFDINRTTGEIFF 114 (119)
Q Consensus 84 i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~ 114 (119)
-.|+-.+.. .+....||..||+|+.
T Consensus 62 svYRWdG~g------EPq~P~ID~ntG~Itd 86 (91)
T PF12461_consen 62 SVYRWDGVG------EPQTPTIDKNTGNITD 86 (91)
T ss_pred EEEEecCCC------CccCceEcCCCCeEeE
Confidence 467777654 2356679999999974
No 28
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=39.37 E-value=1.7e+02 Score=22.15 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=19.1
Q ss_pred EEEEeeCCCCCCeecCCCccEEEeCC
Q psy14282 34 VIHINDVNDMPPVFNTSLYPAIMEEE 59 (119)
Q Consensus 34 ~I~V~DvNDn~P~f~~~~y~~~v~E~ 59 (119)
+|.|...|.+.=+|..-.....++|+
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccc
Confidence 47777888776777776667777777
No 29
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=37.99 E-value=39 Score=18.85 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.2
Q ss_pred CCcEEEeCCCceEEEcccc
Q psy14282 100 NSKFDINRTTGEIFFAPLI 118 (119)
Q Consensus 100 ~~~F~i~~~tG~i~~~~~L 118 (119)
-..|.-|+.+++|.+.+..
T Consensus 41 iKIfkyd~~tNei~L~KE~ 59 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLKKEF 59 (63)
T ss_dssp EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEee
Confidence 4677889999999998754
No 30
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=37.51 E-value=49 Score=20.49 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=17.3
Q ss_pred CCCCC-ceEEEEEEEEeCCCC-ceEEEEEEEe
Q psy14282 9 SNLPT-LIYELTLVASDSLNE-NKTTVVIHIN 38 (119)
Q Consensus 9 LDrE~-~~y~l~v~a~D~~~~-~~~~v~I~V~ 38 (119)
+++.+ -.|++.|+++|..+. .+..+.|.|-
T Consensus 74 ~~v~kgG~y~m~V~lCn~dGCS~S~~~~I~VA 105 (106)
T cd02848 74 FKVGKGGRYQMQVALCNGDGCSTSAAKEIVVA 105 (106)
T ss_pred EEeCCCCeEEEEEEEECCCCccCcCCEEEEec
Confidence 44555 677888887776543 3334445443
No 31
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=37.51 E-value=50 Score=17.24 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=11.1
Q ss_pred ceEEEEEEEeeCCCC
Q psy14282 29 NKTTVVIHINDVNDM 43 (119)
Q Consensus 29 ~~~~v~I~V~DvNDn 43 (119)
.+..++|++.|.|-|
T Consensus 13 e~I~ltVt~kda~G~ 27 (47)
T PF05688_consen 13 ETIPLTVTVKDANGN 27 (47)
T ss_pred CeEEEEEEEECCCCC
Confidence 467788888888664
No 32
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=35.78 E-value=53 Score=17.24 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=15.9
Q ss_pred CCCeEEEEEecCCcCCCCCCCCcEEE--eCCCceEEE
Q psy14282 80 RQNNIVYFLTGQGIDADNPGNSKFDI--NRTTGEIFF 114 (119)
Q Consensus 80 ~~~~i~y~i~~~~~~~~~~~~~~F~i--~~~tG~i~~ 114 (119)
.+..+.+.|.+.-..|.+-..+.|+. +.++|.|++
T Consensus 13 s~q~lv~AldSnlssP~qVasGsfs~a~N~dnG~vRi 49 (51)
T PF09081_consen 13 SNQKLVFALDSNLSSPNQVASGSFSQAVNEDNGQVRI 49 (51)
T ss_dssp SS-EEEEEES-----GGGT-SS--EEEEEETTTTEEE
T ss_pred cccEEEEEecCCCCCcccccccchHhhhhccCCcEEe
Confidence 35566666655432233334556654 777888875
No 33
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=35.34 E-value=72 Score=16.76 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=11.2
Q ss_pred ceEEEEEEEEeCCCC
Q psy14282 14 LIYELTLVASDSLNE 28 (119)
Q Consensus 14 ~~y~l~v~a~D~~~~ 28 (119)
-.|.+++.|+|..+.
T Consensus 24 G~y~itv~a~D~AGN 38 (54)
T PF13754_consen 24 GTYTITVTATDAAGN 38 (54)
T ss_pred ccEEEEEEEEeCCCC
Confidence 568888888887543
No 34
>COG4288 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.68 E-value=1.2e+02 Score=18.91 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=20.8
Q ss_pred eEEEEEEEeeCCCCCCeecCCCccEEEeCCC
Q psy14282 30 KTTVVIHINDVNDMPPVFNTSLYPAIMEEEL 60 (119)
Q Consensus 30 ~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~ 60 (119)
..++++...|.+|-.+.-....|..-+.-|.
T Consensus 67 rrt~hlRfndL~dpe~iP~d~~yasviesnv 97 (124)
T COG4288 67 RRTLHLRFNDLGDPEAIPKDTPYASVIESNV 97 (124)
T ss_pred ceeEEEEecccCCcccCCCCCchhhheecCC
Confidence 5567888888888666655555665555553
No 35
>KOG4680|consensus
Probab=33.24 E-value=1.2e+02 Score=19.88 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=24.1
Q ss_pred cEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEE
Q psy14282 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFL 88 (119)
Q Consensus 53 ~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i 88 (119)
...++-.. ++|+.++..+|.|.+.+.-.-+++++
T Consensus 109 sq~LPg~t--PPG~Y~lkm~~~d~~~~~LTCisfsf 142 (153)
T KOG4680|consen 109 SQVLPGYT--PPGSYVLKMTAYDAKGKELTCISFSF 142 (153)
T ss_pred eEeccCcC--CCceEEEEEEeecCCCCEEEEEEEEE
Confidence 44566665 89999999999999876433344444
No 36
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=32.05 E-value=95 Score=17.16 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=19.5
Q ss_pred CCCCCC-ceEEEEEEEEeCCCC------ceEEEEEEEeeC
Q psy14282 8 TSNLPT-LIYELTLVASDSLNE------NKTTVVIHINDV 40 (119)
Q Consensus 8 ~LDrE~-~~y~l~v~a~D~~~~------~~~~v~I~V~Dv 40 (119)
+|-+++ ..|+-+|.=..++.+ ....|.|.|.|-
T Consensus 3 ~i~f~~~G~Y~YtV~E~~g~~~gvtYD~~~~~vtV~V~~~ 42 (64)
T TIGR03786 3 PLTFTKVGTYTYTITEVKGKEPGVTYDTTVHTVTVTVTDD 42 (64)
T ss_pred ccEeCCCeEEEEEEEEeCCCCCCeEecCCEEEEEEEEEEC
Confidence 345556 667776666555433 455677777663
No 37
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=29.82 E-value=1.7e+02 Score=19.25 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=37.1
Q ss_pred ceEEEEE-EEEeCCCC-ceEEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEEec
Q psy14282 14 LIYELTL-VASDSLNE-NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTG 90 (119)
Q Consensus 14 ~~y~l~v-~a~D~~~~-~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~ 90 (119)
-.|.+.+ .|.|..+. .+..+..++. +...+|...- .....+..+. .-.|..=..+.++|.-.+. .-...+|.+
T Consensus 15 G~Y~l~~~~a~D~agN~~~~~~~~~~~-iD~T~Ptisi-~~~~~~~~g~-~v~~~~~i~i~~tD~~~~~-~i~sv~l~G 89 (158)
T PF13750_consen 15 GSYTLTVVTATDAAGNTSTSTVSETFT-IDNTPPTISI-SDGASVANGS-TVYGLVNISINVTDNSDDS-KITSVSLTG 89 (158)
T ss_pred ccEEEEEEEEEecCCCEEEEEEeeEEE-EcCCCCEEEE-ecCCccCCCc-cccceeeeEEEEEeCCCCc-eEEEEEEEC
Confidence 5799999 79998554 4444443333 3445776644 1112222221 1123344567777765442 233455554
No 38
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=29.48 E-value=32 Score=14.21 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=7.4
Q ss_pred CCCCCCeecCC
Q psy14282 40 VNDMPPVFNTS 50 (119)
Q Consensus 40 vNDn~P~f~~~ 50 (119)
.|-|+|+|...
T Consensus 6 LNp~A~eFvP~ 16 (18)
T PF07145_consen 6 LNPNAPEFVPS 16 (18)
T ss_dssp SSTTSSSS-TT
T ss_pred cCCCCccccCC
Confidence 57788888654
No 39
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=29.21 E-value=1e+02 Score=18.14 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=17.7
Q ss_pred CeEEEEEecCCcCCCCCCCCcEEEeCCCceEE
Q psy14282 82 NNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113 (119)
Q Consensus 82 ~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~ 113 (119)
..+.|.+...+ ...|.+.|..|.|.
T Consensus 32 ~~i~fKiktt~-------~~~y~v~P~~G~i~ 56 (109)
T PF00635_consen 32 KPIAFKIKTTN-------PNRYRVKPSYGIIE 56 (109)
T ss_dssp SEEEEEEEES--------TTTEEEESSEEEE-
T ss_pred CcEEEEEEcCC-------CceEEecCCCEEEC
Confidence 36888887754 56788888888764
No 40
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=29.15 E-value=97 Score=19.97 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=10.4
Q ss_pred ceEEEEEEEEeCCCC-ceEEEEEEEee
Q psy14282 14 LIYELTLVASDSLNE-NKTTVVIHIND 39 (119)
Q Consensus 14 ~~y~l~v~a~D~~~~-~~~~v~I~V~D 39 (119)
-.|+++|++++..+. .+..+.|.|.|
T Consensus 83 G~y~~~VeLCN~~GCS~S~~~~V~VaD 109 (133)
T PF08329_consen 83 GRYQMQVELCNADGCSTSAPVEVVVAD 109 (133)
T ss_dssp EEEEEEEEEEETTEEEE---EEEEEE-
T ss_pred CEEEEEEEEECCCCcccCCCEEEEEeC
Confidence 345555555554332 22334444444
No 41
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=26.91 E-value=3.2e+02 Score=21.64 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=19.0
Q ss_pred ceEEEEEEEEeCCCC--ceEEEEEEEeeC
Q psy14282 14 LIYELTLVASDSLNE--NKTTVVIHINDV 40 (119)
Q Consensus 14 ~~y~l~v~a~D~~~~--~~~~v~I~V~Dv 40 (119)
-.|+|.+.++|..+. ...++.+.|...
T Consensus 379 G~y~Lvv~~t~~dG~~~~q~~~~~~v~~~ 407 (478)
T PRK13211 379 GHHMLVVKAKPKDGELIKQQTLDFMLEAK 407 (478)
T ss_pred ceEEEEEEEEeCCCceeeeeeEEEEEEec
Confidence 578899998876544 466777777633
No 42
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=25.77 E-value=77 Score=15.09 Aligned_cols=16 Identities=13% Similarity=0.507 Sum_probs=11.6
Q ss_pred CCcEEEeCCCceEEEc
Q psy14282 100 NSKFDINRTTGEIFFA 115 (119)
Q Consensus 100 ~~~F~i~~~tG~i~~~ 115 (119)
...+.+|..||++.-.
T Consensus 10 g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWK 25 (38)
T ss_dssp SEEEEEETTTTSEEEE
T ss_pred CEEEEEECCCCCEEEe
Confidence 4678888888877543
No 43
>COG5448 Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=1.9e+02 Score=19.36 Aligned_cols=31 Identities=13% Similarity=0.366 Sum_probs=20.5
Q ss_pred CCeEEEEEecCCcCCCCCCCCcEEEeCCCceEEEcc
Q psy14282 81 QNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFAP 116 (119)
Q Consensus 81 ~~~i~y~i~~~~~~~~~~~~~~F~i~~~tG~i~~~~ 116 (119)
++.+.-.+.+.. ...+.|.+|..||.+.+..
T Consensus 107 ~gSV~v~V~gVk-----~~~~af~VD~~tGiV~l~~ 137 (184)
T COG5448 107 NGSVMVYVNGVK-----TAPGAFIVDYNTGIVTLPS 137 (184)
T ss_pred CCeEEEEEccEE-----cCCcceEeeccCCeEEeCC
Confidence 455555554432 1347899999999988764
No 44
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=23.68 E-value=1.2e+02 Score=15.63 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=10.4
Q ss_pred CCCcEEEeCCCceEEE
Q psy14282 99 GNSKFDINRTTGEIFF 114 (119)
Q Consensus 99 ~~~~F~i~~~tG~i~~ 114 (119)
......+|+.+|.|.-
T Consensus 12 LP~gLs~d~~tG~isG 27 (49)
T PF05345_consen 12 LPSGLSLDPSTGTISG 27 (49)
T ss_pred CCCcEEEeCCCCEEEe
Confidence 4456777777777653
No 45
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=21.50 E-value=4.1e+02 Score=23.06 Aligned_cols=49 Identities=16% Similarity=-0.012 Sum_probs=32.6
Q ss_pred CCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECCCCCCCeEEEEEecCC
Q psy14282 40 VNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQG 92 (119)
Q Consensus 40 vNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~ 92 (119)
.||..+.|.-..-...|.|+. |+.-.+|.-+..|.+....+.|+..++.
T Consensus 395 ~dd~~s~i~Fe~~~Y~V~En~----GtV~VtV~R~GGdl~~tVsVdY~T~DGT 443 (928)
T TIGR00845 395 ENDPVSKIFFEPGHYTCLENC----GTVALTVVRRGGDLTNTVYVDYRTEDGT 443 (928)
T ss_pred ccCCcceEEecCCeEEEeecC----cEEEEEEEEccCCCCceEEEEEEccCCc
Confidence 556666665555567888974 6666666665545554556889988765
No 46
>KOG1030|consensus
Probab=20.79 E-value=2.8e+02 Score=18.70 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=28.3
Q ss_pred EEEEEEEeeCCCCCCeecCCCccEEEeCCCCCCCCcEEEEEEEEECCCC
Q psy14282 31 TTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKD 79 (119)
Q Consensus 31 ~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~~~g~~v~~v~A~D~D~~ 79 (119)
..+.=++.+-|=| |+|.+. +.++|++.. ..+++...|.|..
T Consensus 38 q~lkT~~v~~n~N-PeWNe~-ltf~v~d~~------~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 38 QKLKTRVVYKNLN-PEWNEE-LTFTVKDPN------TPLKVTVYDKDTF 78 (168)
T ss_pred eeeeeeeecCCCC-Ccccce-EEEEecCCC------ceEEEEEEeCCCC
Confidence 3444556776655 899864 899999864 4677778888753
Done!