RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14282
(119 letters)
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 69.7 bits (171), Expect = 4e-16
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y+L + +D+ E + + + D ND P+F Y +ME G +++++
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTG---TTVMRM 130
Query: 72 LATDGDKDRQNN--IVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
A D D +N + Y + Q D P + F I+ G+I
Sbjct: 131 TAFDADDPATDNALLRYNIRQQ--TPDKPSPNMFYIDPEKGDIV 172
Score = 46.2 bits (110), Expect = 2e-07
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
+ P ++ E P+P + KV+ +D + LTG+G D F IN TG
Sbjct: 5 VSPILIPENQRQPFPRDVGKVVDSDRP----EGSKFRLTGKG--VDQDPKGTFRINENTG 58
Query: 111 EIF 113
+
Sbjct: 59 SVS 61
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 68.1 bits (167), Expect = 1e-15
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y L A S E+ +VI + D ND P F ++ + E +PG S++KV
Sbjct: 74 YILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKV 130
Query: 72 LATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
ATD D D I Y + Q D + P + F +NR TG I
Sbjct: 131 SATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVIS 173
Score = 55.4 bits (134), Expect = 1e-10
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
+ E G +P ++ ++D++ + Y +TGQG AD P F I R TG
Sbjct: 4 IAAISCPENEKGEFPK---NLVQIKSNRDKETKVFYSITGQG--ADKPPVGVFIIERETG 58
Query: 111 EIF 113
+
Sbjct: 59 WLK 61
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 67.0 bits (164), Expect = 5e-15
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
+ L A D EN +VI++ D+ND P F ++ + E PG ++ V
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPG---TYVMTV 130
Query: 72 LATDGDKDRQNN--IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
A D D N + Y + Q P + F IN TG+I
Sbjct: 131 TAIDADDPNALNGMLRYRILSQ--APSTPSPNMFTINNETGDI 171
Score = 53.1 bits (128), Expect = 7e-10
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
+ P + E GP+P +++ D+D+ ++ Y +TG G AD P F IN +G
Sbjct: 4 IPPINLPENSRGPFPQ---ELVRIRSDRDKNLSLRYSVTGPG--ADQPPTGIFIINPISG 58
Query: 111 EIF 113
++
Sbjct: 59 QLS 61
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 65.7 bits (160), Expect = 6e-14
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y L+ A E + I++ D ND P F ++ + E PG ++ V
Sbjct: 229 YVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPG---TQVMAV 285
Query: 72 LATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D + + + Y + Q D + P + F INR TG I
Sbjct: 286 SATDEDDNIDSLNGVLSYSILKQ--DPEEPIPNLFTINRETGVI 327
Score = 63.0 bits (153), Expect = 5e-13
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 16 YELTLVASDSLNENK---TTVVIHINDVNDMPPVFNTS-----LYPAIMEEELPGPYPHS 67
+ + + + + + + + + + P + E GP+P
Sbjct: 116 TNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKR 175
Query: 68 LLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
L+++ +KDR N + Y +TGQG ADNP F I TG +
Sbjct: 176 LVQI---KSNKDRFNKVYYSITGQG--ADNPPQGVFRIEWETGWML 216
Score = 61.0 bits (148), Expect = 2e-12
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 18/107 (16%)
Query: 16 YELTLVASDSLNENK------TTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSL 68
Y L + ++ + TV + + DVN+ P F ++ + E+ G +
Sbjct: 451 YVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRG---EKI 506
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFA 115
+ ++A D DK + + YF+ N +N+ G +
Sbjct: 507 ISLVAQDPDKQQIQKLSYFI-------GNDPARWLTVNKDNGIVTGN 546
Score = 57.2 bits (138), Expect = 6e-11
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 16 YELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVL 72
Y LT+ A+D + +I I D ND P+F+ Y A++ E G + ++
Sbjct: 342 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIG---FEVQRLS 398
Query: 73 ATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDIN 106
TD D + F+I
Sbjct: 399 VTDLDMPGTPAWQAVYKIRV-----NEGGFFNIT 427
Score = 49.9 bits (119), Expect = 2e-08
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 31 TTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLT 89
V DV+ P F+++ Y + EL L KV +D + +Y +
Sbjct: 21 QVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRK--LGKVNFSDCTTR--KHGLYDVG 76
Query: 90 GQ--GIDADNPGNSKFDINRTTGEIF 113
+ D K + F
Sbjct: 77 DSRFRVLPDGTVLVKRHVKLHKDTKF 102
Score = 48.3 bits (115), Expect = 6e-08
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 15/108 (13%)
Query: 8 TSNLPTLIYELTLVASDSLNENKT---TVVIHINDVNDMPPVFNTSLYPAIMEEELPGPY 64
+ + Y + ++ +D T T+++H+ DVND PV + ++ + P
Sbjct: 553 SEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP--- 609
Query: 65 PHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+ +D D G D + G
Sbjct: 610 ----QVLTISDADIPPNTYPYKVSLSHGSDLTW-----KAELDSKGTS 648
Score = 27.9 bits (62), Expect = 0.94
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 9 SNLPTLIYELTLVASDSLN-ENKTTVVIHINDVNDMPPVFNTSLYPAIMEE 58
L Y + ++ SD+ N T V + L
Sbjct: 655 QQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLP 705
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 65.4 bits (160), Expect = 7e-14
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y L A S E+ +VI + D ND P F ++ + E +PG S++KV
Sbjct: 74 YILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG---TSVMKV 130
Query: 72 LATDGD--KDRQN-NIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D + N I Y + Q D + P + F +NR TG I
Sbjct: 131 SATDADDDVNTYNAAIAYTIVSQ--DPELPHKNMFTVNRDTGVI 172
Score = 60.0 bits (146), Expect = 5e-12
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 16 YELTLVASDSLNENK------TTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSL 68
Y L + + TV + + DVN+ P+F + + E+ G +
Sbjct: 296 YILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVG---QEI 351
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFA 115
A + D I Y + + +IN TG IF
Sbjct: 352 TSYTAREPDTFMDQKITYRI-------WRDTANWLEINPETGAIFTR 391
Score = 53.1 bits (128), Expect = 2e-09
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 52 YPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGE 111
P E G +P ++ ++D++ + Y +TGQG AD P F I R TG
Sbjct: 5 PPISCPENEKGEFP---KNLVQIKSNRDKETKVFYSITGQG--ADKPPVGVFIIERETGW 59
Query: 112 IF 113
+
Sbjct: 60 LK 61
Score = 51.6 bits (124), Expect = 5e-09
Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 16 YELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVL 72
Y L + A+D E VI + D+ND PVFN S Y + E + +
Sbjct: 187 YTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVN---ARIATLK 243
Query: 73 ATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGE 111
TD D T + D + TT +
Sbjct: 244 VTDDDAPNTPAWKAVYT---VVNDPDQQFVVVTDPTTND 279
Score = 51.2 bits (123), Expect = 6e-09
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 15 IYELTLVASDSLNENKT---TVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKV 71
Y ++A+D + T T+++ + DVND P+ P +
Sbjct: 406 TYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP-------HII 458
Query: 72 LATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
D D + + N + N E
Sbjct: 459 TILDPDLPPNTSPFTAE----LTHGASVNWTIEYNDAAQES 495
Score = 36.2 bits (84), Expect = 0.001
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 9 SNLPTLIYELTLVASDSLN-ENKTTVVIHINDVNDMPPVFNTSLY 52
+L Y++ L +D+ N + TT+ +H+ D + +
Sbjct: 502 KDLEIGEYKIHLKLADNQNKDQVTTLDVHVCDCEGTVNNCMKAHH 546
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 61.2 bits (149), Expect = 8e-14
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 45 PVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFD 104
P+ + + P E GP+P ++ +KD++ + Y +TGQG AD P F
Sbjct: 2 PLGSWVIPPISCPENEKGPFPK---NLVQIKSNKDKEGKVFYSITGQG--ADTPPVGVFI 56
Query: 105 INRTTGEIF 113
I R TG +
Sbjct: 57 IERETGWLK 65
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 65.1 bits (159), Expect = 1e-13
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
+ L A D EN +VI++ D+ND P F ++ + E PG ++ V
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPG---TYVMTV 130
Query: 72 LATDGDKDRQNN--IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
A D D N + Y + Q P + F IN TG+I
Sbjct: 131 TAIDADDPNALNGMLRYRILSQ--APSTPSPNMFTINNETGDI 171
Score = 57.4 bits (139), Expect = 5e-11
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 21/110 (19%)
Query: 16 YELTLVASDSLNENK---------TTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYP 65
+ LT+ A + + K TV + + DVN+ P F + E G
Sbjct: 299 FVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAG--- 354
Query: 66 HSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFA 115
L + A D D+ Q NI Y + + I+ G+I
Sbjct: 355 TMLTTLTAQDPDRYMQQNIRYTK-------LSDPANWLKIDPVNGQITTI 397
Score = 53.1 bits (128), Expect = 1e-09
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 52 YPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGE 111
P + E GP+P +++ D+D+ ++ Y +TG G AD P F IN +G+
Sbjct: 5 PPINLPENSRGPFP---QELVRIRSDRDKNLSLRYSVTGPG--ADQPPTGIFIINPISGQ 59
Query: 112 IF 113
+
Sbjct: 60 LS 61
Score = 52.7 bits (127), Expect = 2e-09
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 16 YELTLVASDSLNE------NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLL 69
Y L + A+D N T VI + DVND PP F + + E +
Sbjct: 186 YTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVD---VIVA 242
Query: 70 KVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDI 105
+ TD D+ I +P +F I
Sbjct: 243 NLTVTDKDQPHTPAWNAAYR---ISGGDPTG-RFAI 274
Score = 52.0 bits (125), Expect = 3e-09
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 12/108 (11%)
Query: 8 TSNLPTLIYELTLVASDSLNENKT---TVVIHINDVNDMPPVFNTSLYPAIMEEELPGPY 64
+ N+ IY T +ASD+ + T+ I++ D+ND P E P
Sbjct: 404 SPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQ-EAETCETPEPNS- 461
Query: 65 PHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+ + A D D D N + N + INR G+
Sbjct: 462 ----INITALDYDID-PNAGPFAFDLPLSPVTIKRN--WTINRLNGDF 502
Score = 33.1 bits (76), Expect = 0.012
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA 54
YE+ ++ +DS N N + + + + + + +
Sbjct: 517 YEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 63.1 bits (154), Expect = 1e-13
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 16 YELTLVASDS----LNENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLK 70
Y L A D E + ++ + D+ND PP F +Y A + E G S+++
Sbjct: 72 YTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVG---TSVIQ 128
Query: 71 VLATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
V A+D D N +VY + G F + TG I
Sbjct: 129 VTASDADDPTYGNSAKLVYSIL--------EGQPYFSVEAQTGII 165
Score = 43.8 bits (104), Expect = 1e-06
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 46 VFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDI 105
V+N EE GP P L+ L +D D NI Y L+G+G + F I
Sbjct: 4 VWNQFFVI----EEYTGPDPV-LVGRLHSDIDSG-DGNIKYILSGEGAG------TIFVI 51
Query: 106 NRTTGEIF 113
+ +G I
Sbjct: 52 DDKSGNIH 59
Score = 34.6 bits (80), Expect = 0.003
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 5/35 (14%)
Query: 16 YELTLVASDSLNE-----NKTTVVIHINDVNDMPP 45
Y + + A D T V I + D
Sbjct: 180 YHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 60.4 bits (147), Expect = 3e-13
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E + + K+ +D ++R I Y TG+G P F N+ TGE+
Sbjct: 16 PVALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYTGKG--ITEPPFGIFVFNKDTGEL 72
Query: 113 F 113
Sbjct: 73 N 73
Score = 36.5 bits (85), Expect = 4e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVF 47
+ LT A D+ E + I + D+ND PVF
Sbjct: 86 FLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 63.5 bits (155), Expect = 3e-13
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKV 71
Y L+ A E + I++ D ND P F ++ + E PG ++ V
Sbjct: 80 YVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPG---TQVMAV 136
Query: 72 LATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
ATD D + + + Y + Q D + P + F INR TG I
Sbjct: 137 SATDEDDNIDSLNGVLSYSILKQ--DPEEPIPNLFTINRETGVI 178
Score = 61.2 bits (149), Expect = 2e-12
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 18/107 (16%)
Query: 16 YELTLVASDSLNENK------TTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSL 68
Y L + ++ + TV + + DVN+ P F ++ + E+ G +
Sbjct: 302 YVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRG---EKI 357
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIFFA 115
+ ++A D DK + + YF+ D +N+ G +
Sbjct: 358 ISLVAQDPDKQQIQKLSYFIGN---DPARW----LTVNKDNGIVTGN 397
Score = 56.2 bits (136), Expect = 1e-10
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 16 YELTLVASDSLNE---NKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKVL 72
Y LT+ A+D + +I I D ND P+F+ Y A++ E G + ++
Sbjct: 193 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIG---FEVQRLS 249
Query: 73 ATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDIN 106
TD D + F+I
Sbjct: 250 VTDLDMPGTPAWQAVYKIRV-----NEGGFFNIT 278
Score = 50.4 bits (121), Expect = 1e-08
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E GP+P L+++ +KDR N + Y +TGQG ADNP F I TG +
Sbjct: 12 PIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQG--ADNPPQGVFRIEWETGWM 66
Query: 113 F 113
Sbjct: 67 L 67
Score = 45.0 bits (107), Expect = 9e-07
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 15 IYELTLVASDSLNENKT---TVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKV 71
Y + ++ +D T T+++H+ DVND PV + ++ + P +
Sbjct: 411 TYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP-------QVL 463
Query: 72 LATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+D D N Y ++ + + + G
Sbjct: 464 TISDADIP-PNTYPYKVS---LSHGSDLTW-KAELDSKGTS 499
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 61.9 bits (151), Expect = 3e-13
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 16 YELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLK 70
Y L A + E ++ +I I+D+ND P+F +Y A + E G +++
Sbjct: 71 YILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVG---TFVVQ 127
Query: 71 VLATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
V ATD D N +VY + G F + TG I
Sbjct: 128 VTATDADDPTYGNSAKVVYSILQ--------GQPYFSVESETGII 164
Score = 43.8 bits (104), Expect = 2e-06
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+ EE G + L +D D+ ++ Y L+G G F IN TG+I
Sbjct: 6 QFFLLEEYTGSDYQ-YVGKLHSDQDRG-DGSLKYILSGDGAG------DLFIINENTGDI 57
Query: 113 F 113
Sbjct: 58 Q 58
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 61.8 bits (151), Expect = 4e-13
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 16 YELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLAT 74
+ + SD V I + DVND P F+ Y I E G + V AT
Sbjct: 78 FTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG---TPIFIVNAT 134
Query: 75 DGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
D D +++Y P + F I+ G +
Sbjct: 135 DPDLGAGGSVLYSFQ--------PPSPFFAIDSARGIVT 165
Score = 43.0 bits (102), Expect = 3e-06
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 41 NDMPPVFNTSLYPA---IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADN 97
+ P F + I E+ G S+ ++LA D D D +V+ ++G
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVG---SSVTQLLARDMDNDP---LVFGVSG------E 49
Query: 98 PGNSKFDINRTTGEI 112
+ F + TG +
Sbjct: 50 EASRFFAVEPDTGVV 64
Score = 28.7 bits (65), Expect = 0.33
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 16 YELTLVASDSLNEN----KTTVVIHINDVNDM 43
Y+LT+ A+D + I I D+ DM
Sbjct: 178 YQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 61.2 bits (149), Expect = 7e-13
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 16 YELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLK 70
YELT D N E + +I ++D+ND P+F ++ + E G S+ K
Sbjct: 69 YELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG---TSVTK 125
Query: 71 VLATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEI 112
V A D D + Y + GN F ++ +
Sbjct: 126 VTAEDADDPTVAGHATVTYQIIK--------GNEYFTVDDSGVIF 162
Score = 47.3 bits (113), Expect = 9e-08
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+ EE+ P PH + K+ ++ G+ N +Y + G+ + + F + G+I
Sbjct: 6 RMHIREEIDSPLPHHVGKLTSSVGN----KNAMYIIEGESAN------TIFKVQGYDGDI 55
Query: 113 F 113
+
Sbjct: 56 Y 56
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 60.9 bits (148), Expect = 2e-12
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 16 YELTLVASDS-----LNENKTTVVIHIN-DVNDMPPVFNTSLYPA-IMEEELPGPYPHSL 68
Y L + A D ++T ++ P F Y A I E + +
Sbjct: 177 YVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD---SDI 233
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+ + A I Y L QG G F+I T+G +
Sbjct: 234 ISIKAKSFADRE---IRYTLKAQG-----QGAGTFNIGPTSGIVK 270
Score = 54.3 bits (131), Expect = 4e-10
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVFNTSLYP---AIMEEELPGPYPHSLL 69
+ + + + V+I + DVND PP F P + P +
Sbjct: 72 WVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPN---TPVF 128
Query: 70 KVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+ A D D D +NI YF+ + +F+++ +G +
Sbjct: 129 TLQARDPDTD--HNIHYFIV------RDRTGGRFEVDERSGVV 163
Score = 28.9 bits (65), Expect = 0.34
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 15 IYELTLVASD---SLNENKTTVVIHINDVND 42
+Y L + A++ + + I + DVND
Sbjct: 285 VYSLIVTATEDSGGFS-TSVDLTIRVTDVND 314
Score = 27.3 bits (61), Expect = 1.3
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDADNPGNS--KFDINRTTGEIF 113
++ T+ D D + V+ L + + T G +
Sbjct: 7 KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVR 53
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 61.2 bits (149), Expect = 2e-12
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 16 YELTLVASDSLNENKT---TVVIHINDVNDMPPVFNTSLYP---AIMEEELPGPYPHSLL 69
+ + + T V+I + DVND PP F P + P +
Sbjct: 77 WVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPN---TPVF 133
Query: 70 KVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+ A D D D +NI YF+ +F+++ +G +
Sbjct: 134 TLQARDPDTD--HNIHYFIVRDR------TGGRFEVDERSGVV 168
Score = 58.5 bits (142), Expect = 2e-11
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 15 IYELTLVASD---SLNENKTTVVIHINDVNDMPPVFNTSLYPA--IMEEELPGPYPHSLL 69
+Y L + A++ + + I + DVND P F Y A + E+ G S+L
Sbjct: 290 VYSLIVTATEDSGGFS-TSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLG---TSIL 345
Query: 70 KVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+V A D D I Y ++ + F ++ + G I
Sbjct: 346 RVKAMDSDSGSNAEIEYLVS----------DDHFAVD-SNGIIV 378
Score = 47.3 bits (113), Expect = 2e-07
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 16 YELTLVASD-----SLNENKTTVVIHIN-DVNDMPPVFN-TSLYPAIMEEELPGPYPHSL 68
Y L + A D ++T ++ P F S I E + +
Sbjct: 182 YVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD---SDI 238
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
+ + A DR+ Y L QG G F+I T+G +
Sbjct: 239 ISIKAKSFA-DREIR--YTLKAQG-----QGAGTFNIGPTSGIV 274
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 59.2 bits (144), Expect = 9e-12
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 16 YELTLVASDSLNE-----NKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLL 69
Y + + A D TT+ + + DVND PP F SLY + E+ + G ++
Sbjct: 179 YLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLG---TAIG 235
Query: 70 KVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
+V A D D Y + D D G I
Sbjct: 236 RVKANDQDIGENAQSSYDIIDG--DGTALFEITSDAQAQDGVIR 277
Score = 53.5 bits (129), Expect = 8e-10
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 16 YELTLVASDSLN----ENKTTVVIHINDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLK 70
Y LT A D E + +I + D+ND P F Y A + E + G S+
Sbjct: 71 YTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG---TSVTN 127
Query: 71 VLATDGDKDRQNN---IVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
V ATD D N +VY + G F I T I
Sbjct: 128 VTATDADDPVYGNSAKLVYSILE--------GQPYFSIEPETAIIK 165
Score = 48.1 bits (115), Expect = 7e-08
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 45 PVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFD 104
V+N EE GP P L+ L TD D I Y L+G G + F
Sbjct: 2 WVWNQMFVL----EEFSGPEPI-LVGRLHTDLDPGS-KKIKYILSGDGAG------TIFQ 49
Query: 105 INRTTGEIF 113
IN TG+I
Sbjct: 50 INDITGDIH 58
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 55.0 bits (133), Expect = 3e-11
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E GP+P +++ +D+ ++ Y +TG G AD P F IN +G++
Sbjct: 8 PINLPENSRGPFPQ---ELVRIRSGRDKNLSLRYSVTGPG--ADQPPTGIFIINPISGQL 62
Query: 113 F 113
Sbjct: 63 S 63
Score = 35.3 bits (82), Expect = 8e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPPVF 47
+ L A D EN +VI++ D+ND P F
Sbjct: 76 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 53.6 bits (129), Expect = 7e-11
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 52 YPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGE 111
P ++ E P+P S+ KV+ ++G + L+G+G D F IN +G+
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEGT----EGAKFRLSGKG--VDQDPKGIFRINEISGD 58
Query: 112 IF 113
+
Sbjct: 59 VS 60
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 50.1 bits (120), Expect = 2e-09
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
+ E P+P + +V+ +D L G+G D F IN +G
Sbjct: 4 APSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKG--VDQEPKGIFKINENSG 57
Query: 111 EIF 113
E+
Sbjct: 58 EVS 60
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 49.7 bits (119), Expect = 2e-09
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 14/70 (20%)
Query: 44 PPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKF 103
P+ + E P+P + KV+ +D + LTG+G D F
Sbjct: 6 SPIL--------IPENQRQPFPRDVGKVVDSDRP----EGSKFRLTGKG--VDQDPKGTF 51
Query: 104 DINRTTGEIF 113
IN TG +
Sbjct: 52 RINENTGSVS 61
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 48.6 bits (116), Expect = 7e-09
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 46 VFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDI 105
V+N + EE GP P L+ L TD D I Y L+G G + F I
Sbjct: 3 VWN----QMFVLEEFSGPEPI-LVGRLHTDLDPG-SKKIKYILSGDGAG------TIFQI 50
Query: 106 NRTTGEIF 113
N TG+I
Sbjct: 51 NDITGDIH 58
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 48.2 bits (116), Expect = 1e-08
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 37 INDVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDA 95
+ ND P F S+Y A + E PG +L++ A D D I Y A
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPG---TPILQLRAADLDVGVNGQIEYVFG----AA 56
Query: 96 DNPGNSKFDINRTTGEI 112
++ T+G +
Sbjct: 57 TESVRRLLRLDETSGWL 73
Score = 28.6 bits (65), Expect = 0.26
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 16 YELTLVASDSLN---ENKTTVVIHINDVNDMPP 45
T++A D +K TVV++I D ND P
Sbjct: 87 LRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 46.2 bits (110), Expect = 5e-08
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 58 EELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEIF 113
EE G P + L +D D+ +I Y L+G+G F I+ TTG+I
Sbjct: 12 EEYTGTDPL-YVGKLHSDMDRG-DGSIKYILSGEGAG------IVFTIDDTTGDIH 59
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 45.9 bits (110), Expect = 8e-08
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 35 IHINDVNDMPPVFNTSLYPAIMEEELP-GPYPHSLLKVLATDGDKDRQN-NIVYFLTGQG 92
+ ND PVF + E P G S++++ ATD D N I Y Q
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVG---TSVIQLHATDAD-IGSNAEIRYIFGAQ- 56
Query: 93 IDADNPGNSKFDINRTTGEI 112
F +N TTG I
Sbjct: 57 --VAPATKRLFALNNTTGLI 74
Score = 24.3 bits (54), Expect = 8.3
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 16 YELTLVASD-SLNENKTTVVIHINDVN 41
+++T++ASD S + TV I++ DVN
Sbjct: 88 HKVTVLASDGSSTPARATVTINVTDVN 114
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 44.1 bits (104), Expect = 2e-06
Identities = 13/93 (13%), Positives = 21/93 (22%), Gaps = 21/93 (22%)
Query: 31 TTVVIHINDVNDMPPVFN-----------TSLYPAIMEEELPGPYPHSLLKVLATDGDKD 79
++ + N P + T I E PG L
Sbjct: 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPG---TFHQFRLLPVQFLC 169
Query: 80 RQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
Q ++ Y L F + E+
Sbjct: 170 PQISVAYRLLE-------GEGLPFRSAPDSLEV 195
Score = 38.0 bits (88), Expect = 3e-04
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 16 YELTLVASD----SLNENKTTVVIHINDVNDMPPVF 47
YEL V + + + D +D P F
Sbjct: 209 YELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEF 244
Score = 36.1 bits (83), Expect = 0.001
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 47 FNTSLYPA-IMEEELPGPYPHSLLKVLATDGDKDRQNN--IVYFLTGQGIDADNPGNSKF 103
F+ Y + ++ G LL V A + + + L G N+
Sbjct: 3 FSRDAYWEKLYVDQAAGT---PLLYVHALRDAPEEVPSFRLGQHLYG-TYRTRLHENNWI 58
Query: 104 DINRTTGEIF 113
I TG ++
Sbjct: 59 RIQEDTGLLY 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.25
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 37 INDVNDMP-PVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDA 95
DV DMP + + I+ + L L +Q +V + +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-----LSKQEEMVQKFVEEVLRI 89
Query: 96 D 96
+
Sbjct: 90 N 90
Score = 27.1 bits (59), Expect = 1.8
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 34/100 (34%)
Query: 10 NLPTLIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNTSLYPAIMEEELPGPYPHSLL 69
L L+Y++ + S +++ + + + I+ + ++ + PY + LL
Sbjct: 201 MLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRL--------LKSK---PYENCLL 248
Query: 70 ------------------KVLATDGDKDRQNNIVYFLTGQ 91
K+L T K + FL+
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFK----QVTDFLSAA 284
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase,
catalytic proline, hexamer, BE beta, isomerase; 1.90A
{Helicobacter pylori} PDB: 2orm_A
Length = 67
Score = 26.6 bits (59), Expect = 0.67
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVND 42
LI ++ + LN+NK ++V+ I++V+
Sbjct: 22 LIEGVSDLMVKVLNKNKASIVVIIDEVDS 50
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus
thermophilus}
Length = 64
Score = 26.1 bits (58), Expect = 1.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDV 40
L+ LT +AS L E V + + +V
Sbjct: 20 LVRRLTEMASRLLGEPYEEVRVILYEV 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.2
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 1 MALYPPGTSNLPTLIYELTL 20
+ LY ++ P L + T+
Sbjct: 29 LKLYADDSA--PALAIKATM 46
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, hydrolase; 2.41A {Chloroflexus
aurantiacus}
Length = 72
Score = 25.9 bits (57), Expect = 1.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDV 40
L L+ A+ + + V + I +V
Sbjct: 20 LARALSAAAAAAFDVPLAEVRLIIQEV 46
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP}
SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Length = 62
Score = 25.4 bits (56), Expect = 1.7
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDV 40
LI +++ ++SL+ V + I ++
Sbjct: 19 LIRQVSEAMANSLDAPLERVRVLITEM 45
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family,
isomerase; 1.40A {Streptomyces achromogenes}
Length = 65
Score = 25.4 bits (56), Expect = 1.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDV 40
L LT A ++L V + + +
Sbjct: 19 LGEALTAAAHETLGTPVEAVRVIVEET 45
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 26.4 bits (59), Expect = 1.8
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 33 VVIHINDVNDMPPVF 47
I + DVND P F
Sbjct: 101 GEIQLQDVNDHAPEF 115
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus
aureus}
Length = 63
Score = 25.4 bits (56), Expect = 2.0
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDV 40
L+ E+T + N+ + + I ++
Sbjct: 22 LVSEVTDAVEKTTGANRQAIHVVIEEM 48
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate
tautomerase, inhibitor, 2-FLUO hydroxycinnamate,
isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB:
2op8_A*
Length = 61
Score = 25.4 bits (56), Expect = 2.2
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDV 40
L+ ++T ++ ++ +V+ I ++
Sbjct: 19 LVEKVTEAVKETTGASEEKIVVFIEEM 45
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas
pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A
Length = 76
Score = 25.1 bits (55), Expect = 2.7
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDV 40
L L V S++ E + + I +
Sbjct: 20 LSAGLLRVISEATGEPRENIFFVIREG 46
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA,
national project protein structural and functional
analyses; 1.85A {Thermus thermophilus} SCOP: d.38.1.7
Length = 141
Score = 26.0 bits (57), Expect = 2.9
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 40 VNDMPPVFNTSLYPAIMEE 58
+ + PV+ T ME
Sbjct: 27 LGPVHPVYATYWMVKHMEL 45
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose
binding protein, periplasmic binding protein,
thermophilic proteins; 1.40A {Thermotoga maritima} PDB:
2fn8_A*
Length = 290
Score = 25.8 bits (57), Expect = 4.6
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDA 95
+ + D +++ + G DA
Sbjct: 35 ATIFDSQNDTAKESAHFDAIIAAGYDA 61
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A
{Arachis hypogaea}
Length = 510
Score = 25.7 bits (55), Expect = 5.1
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 80 RQNNIVYFLTGQGID--ADNPGNSKFDINRTTGEIFFAP 116
++I+Y L G+ D+ GN +D G + P
Sbjct: 392 NAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVP 430
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle,
beta-alpha-beta, catalytic proline, isomerase; 2.37A
{Archaeoglobus fulgidus}
Length = 62
Score = 24.4 bits (53), Expect = 5.1
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDVND 42
+ LT VA++ +++ + I I++
Sbjct: 18 FVERLTSVAAEIYGMDRSAITILIHEPPA 46
>3h75_A Periplasmic sugar-binding domain protein; protein structure
initiative II (PSI II), sugar binding PROT alpha/beta
fold; 1.60A {Pseudomonas fluorescens pf-5}
Length = 350
Score = 25.5 bits (56), Expect = 5.3
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDAD--NPGNSK 102
L++L + D L D N +
Sbjct: 37 LRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding
subunit; sugar binding/transporter, structural genomics,
PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Length = 291
Score = 25.4 bits (56), Expect = 5.9
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDA--DNPGNSK 102
L + Q + + L Q DA + GN
Sbjct: 38 AIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A
{Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A
1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Length = 271
Score = 25.3 bits (56), Expect = 6.1
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDA 95
L VL + + ++ V LT +G
Sbjct: 34 LVVLDSQNNPAKELANVQDLTVRGTKI 60
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida
albicans} PDB: 2dkc_A* 2dkd_A*
Length = 544
Score = 25.3 bits (55), Expect = 7.0
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 34 VIHINDVNDMPPVFNT---SLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTG 90
+N P + N + Y ++ P + + DGD DR ++ +
Sbjct: 246 FTVVNGDYKQPNLLNFDCGADYVKTNQKLPKNVKPVNNKLYASFDGDADR---LICYYQ- 301
Query: 91 QGIDADNPGN 100
+ DN
Sbjct: 302 ---NNDNKFK 308
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC,
twin arginine translocation pathway signal P structural
genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Length = 332
Score = 25.1 bits (55), Expect = 7.0
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 69 LKVLATDGDKDRQNNIVYFLTGQGIDAD----NPGNSK 102
L T+G ++ + L + +P +S
Sbjct: 38 YVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSA 75
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 24.9 bits (55), Expect = 7.4
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 37 INDVNDMPPVFNTSLYPAIMEEELPGPYPHSLLKV--------LATDGDKDR 80
+N D F + + + PY + L + D D DR
Sbjct: 240 VNPTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLALKDRFDLAIGNDPDADR 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.404
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,793,725
Number of extensions: 95553
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 97
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (23.4 bits)