RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14282
(119 letters)
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 38.9 bits (90), Expect = 1e-05
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 45 PVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFD 104
P+ + + P E GP+P ++ +KD++ + Y +TGQG D G F
Sbjct: 1 PLGSWVIPPISCPENEKGPFP---KNLVQIKSNKDKEGKVFYSITGQGADTPPVG--VFI 55
Query: 105 INRTTGEIFF 114
I R TG +
Sbjct: 56 IERETGWLKV 65
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 37.8 bits (87), Expect = 3e-05
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 51 LYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTG 110
+ P + E GP+P +++ +KDR N + Y +TGQ ADNP F I TG
Sbjct: 4 IPPIKVSENERGPFP---KRLVQIKSNKDRFNKVYYSITGQ--GADNPPQGVFRIEWETG 58
Query: 111 EIFF 114
+
Sbjct: 59 WMLV 62
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 35.6 bits (81), Expect = 2e-04
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 53 PAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGNSKFDINRTTGEI 112
P + E GP+P +++ +D+ ++ Y +TG G D G F IN +G++
Sbjct: 8 PINLPENSRGPFP---QELVRIRSGRDKNLSLRYSVTGPGADQPPTG--IFIINPISGQL 62
Query: 113 FF 114
Sbjct: 63 SV 64
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 141
Score = 30.4 bits (68), Expect = 0.030
Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 10/98 (10%)
Query: 5 PPGTSNLPTLIYELTLVASDSLNENKTTVVIHINDVNDMPPVFNT------SLYPAIMEE 58
P P YE + L +K + I D + + LY E
Sbjct: 41 PAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTEN 100
Query: 59 ELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDAD 96
+ +P V+ D +V G AD
Sbjct: 101 AMIEWHPGPDSAVV----KVDGGEMMVETAFGDEFKAD 134
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 30.0 bits (66), Expect = 0.039
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 3 LYPPGTSNLPTLIYELTLVASDSLNENK--TTVVIHINDVNDMPPVFNTSLYPAI 55
+Y + L + + A D + K V + P+ I
Sbjct: 64 VYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEI 118
Score = 26.5 bits (57), Expect = 0.76
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 39 DVNDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYF 87
++ F +Y A + ++ G LL V ++ ++ R+
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEG---QPLLNVKFSNCNRKRKVQYESS 51
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 28.4 bits (62), Expect = 0.10
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 41 NDMPPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPGN 100
ND P+F+ Y A++ E G + ++ TD + ++ N
Sbjct: 2 NDNAPIFDPKTYTALVPENEIG---FEVQRLSVTD-LDMPGTPAWQAVYKIRVNEGGFFN 57
Query: 101 SKFDINRTTGEIFFAP 116
D G + A
Sbjct: 58 ITTDPESNQGILTTAK 73
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 28.5 bits (62), Expect = 0.11
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 41 NDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPG 99
ND P F ++ + E +PG + A D I Y + Q D + P
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ--DPELPH 58
Query: 100 NSKFDINRTTGEIF 113
+ F +NR TG I
Sbjct: 59 KNMFTVNRDTGVIS 72
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 28.1 bits (61), Expect = 0.15
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 41 NDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPG 99
ND P F ++ + E PG ++ V A D D N + P
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPG---TYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPS 57
Query: 100 NSKFDINRTTGEIF 113
+ F IN TG+I
Sbjct: 58 PNMFTINNETGDII 71
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 26.2 bits (56), Expect = 1.00
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 35 IHINDVNDMPPVFNTSLYPAIME 57
++ + N P + + SL P
Sbjct: 170 FYLLEANTSPGMTSHSLVPMAAR 192
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 25.4 bits (54), Expect = 1.3
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 16 YELTLVASDSLN-ENKTTVVIHINDVNDMPPV 46
Y + ++ SD+ N T V +
Sbjct: 74 YSIYVLLSDAQNNPQLTVVNATVCSCEGKAIK 105
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 25.0 bits (53), Expect = 1.7
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 41 NDMPPVFNTSLYPA-IMEEELPGPYPHSLLKVLATDGDKDRQNNIVYFLTGQGIDADNPG 99
ND P F ++ + E PG ++ D + Y + Q + P
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 100 NSKFDINR 107
+
Sbjct: 62 LFTINRET 69
Score = 23.5 bits (49), Expect = 5.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 16 YELTLVASDSLN---ENKTTVVIHIND 39
Y LT+ A+D + +I I D
Sbjct: 87 YTLTVQATDLEGAGLSVEGKAIIQITD 113
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 25.4 bits (54), Expect = 1.8
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 35 IHINDVNDMPPVFNTSLYPAIMEE 58
++ + N +P N SL+ + +
Sbjct: 178 PYLGEPNTLPGFTNMSLFKRLWDY 201
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 25.1 bits (53), Expect = 2.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 35 IHINDVNDMPPVFNTSLYPAIME 57
I +N+VN +P + S YP +M
Sbjct: 170 IVLNEVNTLPGFTSYSRYPRMMA 192
>d1m6ka_ e.3.1.1 (A:) Class D beta-lactamase {Escherichia coli,
OXA-1 [TaxId: 562]}
Length = 251
Score = 24.8 bits (53), Expect = 3.2
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 16 YELTLVASDSLNENKTTVVIHINDVNDMPPVFN 48
+++ VAS + +++ N FN
Sbjct: 2 TDISTVASPLFEGTEGCFLLYDASTNAEIAQFN 34
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.0 bits (52), Expect = 3.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 14 LIYELTLVASDSLNENKTTVVIHINDV 40
L ++T V LN +++ I + +
Sbjct: 20 LAADITDVIIRHLNSKDSSISIALQQI 46
>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus
aureus [TaxId: 1280]}
Length = 413
Score = 24.2 bits (52), Expect = 4.7
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 97 NPGNSKFDINRTTGEIFFAP 116
N F N T E+F AP
Sbjct: 237 NGKEQAFIANIPTEEVFTAP 256
>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 113
Score = 24.0 bits (51), Expect = 4.8
Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 1/55 (1%)
Query: 27 NENKTTVVIHINDVNDM-PPVFNTSLYPAIMEEELPGPYPHSLLKVLATDGDKDR 80
E +N V + + + A DGD DR
Sbjct: 48 EELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDR 102
>d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 148
Score = 23.7 bits (51), Expect = 7.0
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 3 LYPPGTSNLPTLIYELTLVASDSLNENKTTVVIHINDV 40
+ G+ LP L+ L L ++ N+T +
Sbjct: 93 FWGSGSHTLPALLENLKLRKQNNGAFNETLFRNQLALA 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.138 0.404
Gapped
Lambda K H
0.267 0.0495 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 434,118
Number of extensions: 17793
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 25
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.4 bits)