Query psy14284
Match_columns 149
No_of_seqs 182 out of 971
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 15:57:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04201 zinc transporter ZupT 99.7 9.6E-17 2.1E-21 129.4 9.4 127 19-149 3-161 (265)
2 KOG2694|consensus 99.7 1.8E-16 4E-21 126.7 10.7 143 3-149 89-252 (361)
3 COG0428 Predicted divalent hea 99.6 4.6E-15 1E-19 120.0 10.4 120 19-149 6-160 (266)
4 KOG2693|consensus 99.5 8.7E-16 1.9E-20 131.8 1.1 79 1-82 343-421 (453)
5 KOG2694|consensus 99.3 1.2E-12 2.6E-17 104.9 2.8 78 1-82 252-333 (361)
6 KOG2693|consensus 99.2 3.1E-12 6.7E-17 110.0 2.5 47 103-149 297-343 (453)
7 PRK04201 zinc transporter ZupT 99.2 4.5E-11 9.7E-16 96.5 7.2 79 1-81 161-239 (265)
8 COG0428 Predicted divalent hea 99.1 1E-10 2.3E-15 94.6 5.7 79 1-82 160-238 (266)
9 PF02535 Zip: ZIP Zinc transpo 99.0 2.9E-09 6.2E-14 86.5 10.8 127 21-149 35-210 (317)
10 PF02535 Zip: ZIP Zinc transpo 99.0 3.7E-10 7.9E-15 91.8 5.1 82 1-82 210-292 (317)
11 PLN02159 Fe(2+) transport prot 98.6 1.5E-07 3.3E-12 78.6 7.1 80 1-80 222-304 (337)
12 TIGR00820 zip ZIP zinc/iron tr 98.5 1.7E-07 3.7E-12 77.8 6.0 78 1-79 209-290 (324)
13 PLN02159 Fe(2+) transport prot 97.8 4.9E-05 1.1E-09 63.7 5.5 40 108-149 183-222 (337)
14 TIGR00820 zip ZIP zinc/iron tr 97.5 0.00017 3.6E-09 60.0 5.4 40 108-149 170-209 (324)
15 KOG2474|consensus 96.9 0.00016 3.4E-09 61.3 -1.0 81 1-84 298-379 (406)
16 KOG1558|consensus 96.1 0.012 2.7E-07 49.1 5.7 78 4-81 217-296 (327)
17 KOG1558|consensus 94.6 0.16 3.4E-06 42.6 7.3 41 107-149 174-214 (327)
18 KOG3907|consensus 91.8 0.0054 1.2E-07 49.4 -5.4 84 1-84 182-267 (303)
19 PRK11469 hypothetical protein; 91.0 4.9 0.00011 30.9 10.5 23 108-130 106-128 (188)
20 COG1971 Predicted membrane pro 83.4 19 0.00042 28.0 9.8 23 107-129 107-129 (190)
21 TIGR02840 spore_YtaF putative 82.8 20 0.00044 27.8 11.6 28 19-46 29-56 (206)
22 KOG2474|consensus 54.0 20 0.00044 30.9 4.0 62 12-77 37-98 (406)
23 PF02673 BacA: Bacitracin resi 40.8 1.3E+02 0.0029 24.3 6.7 31 11-41 170-200 (259)
24 PF02687 FtsX: FtsX-like perme 34.6 83 0.0018 20.7 4.1 20 7-26 27-46 (121)
25 PF12672 DUF3793: Protein of u 32.7 18 0.0004 27.5 0.5 16 2-22 104-119 (176)
26 PF02659 DUF204: Domain of unk 30.6 1E+02 0.0022 19.0 3.8 30 17-46 16-45 (67)
27 PF01307 Plant_vir_prot: Plant 29.5 12 0.00025 26.3 -1.0 11 115-125 35-45 (104)
28 KOG3907|consensus 29.3 4.7 0.0001 32.8 -3.3 37 113-149 145-182 (303)
29 COG1238 Predicted membrane pro 28.6 75 0.0016 24.0 3.2 30 105-134 99-128 (161)
30 COG1230 CzcD Co/Zn/Cd efflux s 28.1 52 0.0011 27.3 2.5 24 111-134 47-70 (296)
31 TIGR01185 devC DevC protein. T 25.7 1.5E+02 0.0033 25.0 5.0 39 5-43 286-329 (380)
32 PRK10814 outer membrane-specif 25.7 1.5E+02 0.0032 24.7 4.9 23 5-27 292-314 (399)
33 TIGR02212 lolCE lipoprotein re 24.8 1.4E+02 0.003 24.7 4.6 38 4-41 293-331 (411)
34 COG2119 Predicted membrane pro 22.0 3.9E+02 0.0084 20.8 6.7 69 6-80 15-88 (190)
35 PRK09430 djlA Dna-J like membr 20.0 1.2E+02 0.0025 24.6 3.1 27 23-49 7-33 (267)
No 1
>PRK04201 zinc transporter ZupT; Provisional
Probab=99.69 E-value=9.6e-17 Score=129.44 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcccccC-------ccch-----
Q psy14284 19 TKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVERSE-------EGEE----- 86 (149)
Q Consensus 19 s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p~~~~~l~~~~G~~l~~~l~~llp~~~~~-------~~~~----- 86 (149)
+.++++++++++++++.+|++++++.++.+++ .....+.+.+|+++|..+.+++|+..+. ....
T Consensus 3 ~~~~a~~~~~l~~~~t~lGal~~~~~~~~~~~----~l~~~lafAaGvml~~~~~~LiPea~~~~~~~~~~~~~~~~~~~ 78 (265)
T PRK04201 3 NVSVALLLTLLAGLATGIGSLIAFFGKKPNNR----FLSFSLGFAAGVMLYVSFMEILPKALAALTEAYGEGMGPWLGYG 78 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 34678999999999999999999988776553 2334455556666666666665554321 0000
Q ss_pred ----------------hhccc----CCCCCCCCCCCCCcchhHHHHHHHHHhhhhchhHHHHHHHhhhhhhhHHHHHHHH
Q psy14284 87 ----------------KADKT----NGGSDVNANKVPHPVQMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTTFAI 146 (149)
Q Consensus 87 ----------------~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~Hnf~~Glaig~~f~~~~~~G~~~~~ai 146 (149)
.+++. .+.+.++..+.+++..+.+|++++++++||||||+++|++|..+.++|+.+++||
T Consensus 79 ~~~~G~ll~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lH~~~eGlalg~~~~~~~~~g~~~~~aI 158 (265)
T PRK04201 79 AFFGGILGIFLIDRLVPHENPHELMQKEEMEFQQPLPKSLKRTGILTALAISIHNFPEGIATFVAALSNPELGFPIALAI 158 (265)
T ss_pred HHHHHHHHHHHHHHhccccCcccccccccccccccchHHHHHHHHHHHHHHHHHhcchhhhhhhhhhcchhhHHHHHHHH
Confidence 00000 0000000111123456889999999999999999999999999999999999999
Q ss_pred hcC
Q psy14284 147 LSK 149 (149)
Q Consensus 147 ~~H 149 (149)
++|
T Consensus 159 ~~H 161 (265)
T PRK04201 159 AIH 161 (265)
T ss_pred HHh
Confidence 998
No 2
>KOG2694|consensus
Probab=99.69 E-value=1.8e-16 Score=126.72 Aligned_cols=143 Identities=37% Similarity=0.546 Sum_probs=100.5
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCC-----CCCcchh-hHHHHHHHHHHHHHHHHHh
Q psy14284 3 IPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDE-----VDGPCMT-CGLWVLAGLLVFIVAEKAF 76 (149)
Q Consensus 3 iP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~-----~~~p~~~-~~l~~~~G~~l~~~l~~ll 76 (149)
||-|++. ++++....|| +...+..+++..+|.++-.++.+..+. ...+.++ .++|+++|++.|.+++|+.
T Consensus 89 iP~e~~~---~l~s~ag~~r-L~~LLsFAiGgLLgdVFLHLLPEAwe~~n~~p~~e~sl~siGLwVlaGiLtF~~ieK~f 164 (361)
T KOG2694|consen 89 IPAEIHV---LLSSSAGQRR-LNLLLSFAIGGLLGDVFLHLLPEAWESNNQDPSSENSLSSIGLWVLAGILTFSLIEKLF 164 (361)
T ss_pred echhhhh---hccCchhHHH-HHHHHHHHHhhHHHHHHHHhCHHHHhccCCCCCCCCchhhhhHHHHHHHHHHHHHHHHH
Confidence 6888874 5666555544 466677788999998887776554221 1112333 6999999999999999999
Q ss_pred cccccCccc--hhhcc------cCC-CCC------CCCCCCCCcchhHHHHHHHHHhhhhchhHHHHHHHhhhhhhhHHH
Q psy14284 77 NVERSEEGE--EKADK------TNG-GSD------VNANKVPHPVQMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLL 141 (149)
Q Consensus 77 p~~~~~~~~--~~~~~------~~~-~~~------~~~~~~~~~~~~~~~l~~~~~~~Hnf~~Glaig~~f~~~~~~G~~ 141 (149)
-..+++.++ ++++- ++| .|- +.+.+..+.++..||+|++++.+.||++|+|+++||+++.+.|+.
T Consensus 165 ~ss~EE~~~q~p~~~~~~ac~~~~g~~c~~r~~~q~~~~~~~q~~kvagYLNLlAN~iDNFtHGLAVa~SFLVS~k~Gil 244 (361)
T KOG2694|consen 165 ASSEEEQHKQSPSAHFLNACGGACGKVCFLREQEQKSKERKEQPKKVAGYLNLLANIIDNFTHGLAVASSFLVSTKFGIL 244 (361)
T ss_pred hcchhhccccCCCcchhhHhhhccccceecchhhcccccccccchhHHHHHHHHHHhhhhhhhhhHHhhhhhhhhhhhHH
Confidence 544333221 11110 111 111 112233467889999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q psy14284 142 TTFAILSK 149 (149)
Q Consensus 142 ~~~ai~~H 149 (149)
+|+||++|
T Consensus 245 tT~aILLH 252 (361)
T KOG2694|consen 245 TTIAILLH 252 (361)
T ss_pred HHHHHHHh
Confidence 99999998
No 3
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=99.61 E-value=4.6e-15 Score=119.96 Aligned_cols=120 Identities=24% Similarity=0.312 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHhHHhhhhhHhhhc-cCCCCC--------------------CCCcchh--------------hHHHHH
Q psy14284 19 TKWDATKAQLYTSCAGLVGALTAISC-SGVTDE--------------------VDGPCMT--------------CGLWVL 63 (149)
Q Consensus 19 s~~~al~~~~l~al~t~lGal~g~~~-~~~~~~--------------------~~~p~~~--------------~~l~~~ 63 (149)
+...+++..++++++|.+|+.+.++. .+.+++ ...|..+ ...-++
T Consensus 6 ~~l~~~~~~ll~~~~t~lG~~~~~~~~~~~~~~~~~~~~gFa~Gvm~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 85 (266)
T COG0428 6 SLLFALLLGLLAGLATALGALLVVLAVRKVSPRVLDILLGFAAGVMLAASFTSLLPPAIEASGVLGDSTHEFLPALAGFL 85 (266)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhcccchHHHHHHHhhhhhHHHHHHHHHhcchHHhhhccccccchhhHHHHHHHH
Confidence 44567788999999999999998884 444332 0111111 112267
Q ss_pred HHHHHHHHHHHHhcccccCccchhhcccCCCCCCCCCCCCCcchhHHHHHHHHHhhhhchhHHHHHHHhhhhhhhHHHHH
Q psy14284 64 AGLLVFIVAEKAFNVERSEEGEEKADKTNGGSDVNANKVPHPVQMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTT 143 (149)
Q Consensus 64 ~G~~l~~~l~~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Hnf~~Glaig~~f~~~~~~G~~~~ 143 (149)
.|++.+..+|+++|+.|..+..+. .++.+++..+.+|++++++++||||||+|||++|.++.+.|++++
T Consensus 86 ~G~~~~~~~d~l~~h~h~~~~~~~-----------~~~~~~~~~~~~~l~~lai~iHnfpEGlai~va~~~~~~~gi~~a 154 (266)
T COG0428 86 LGVLFIFLLDRLVPHEHEGKSVEG-----------LEGLRKPNLRRGFLLALAISLHNFPEGLAIGVAFLSNPSLGIALA 154 (266)
T ss_pred HHHHHHHHHHHcCCccCCCCCccc-----------cccccCcchhHHHHHHHHHHHhccchhHHHHHHHhccchHHHHHH
Confidence 899999999999995554311111 111122226789999999999999999999999999999999999
Q ss_pred HHHhcC
Q psy14284 144 FAILSK 149 (149)
Q Consensus 144 ~ai~~H 149 (149)
+||.+|
T Consensus 155 laI~ih 160 (266)
T COG0428 155 LAIAIH 160 (266)
T ss_pred HHHHHh
Confidence 999998
No 4
>KOG2693|consensus
Probab=99.55 E-value=8.7e-16 Score=131.76 Aligned_cols=79 Identities=28% Similarity=0.411 Sum_probs=70.6
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcccc
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVER 80 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p~~~~~l~~~~G~~l~~~l~~llp~~~ 80 (149)
||+|||+|||++|+++|++++||+++|+++++++++|..+++++.+..+.. ..++.+++.+|+|+|+++.+++||+.
T Consensus 343 HElPHELGDFAILl~sG~s~kqAl~lnllsal~a~~G~~ig~~~~~~~~~~---~~~~I~a~taG~FlYIAl~~m~Pem~ 419 (453)
T KOG2693|consen 343 HEFPHELGDFAILLRSGLSVKQALLLNLLSALTAFAGLAIGLVLGAGDEEE---LSSWILAFTAGMFLYIALVDVLPEML 419 (453)
T ss_pred HhccHHHHHHHHHHHcCCcHHHHHHHHHHhHHHHHhhhheeEEecCCCccc---hHHHHHHHhcCcEEEEEehhhchhhh
Confidence 899999999999999999999999999999999999999999998863221 24577889999999999999999987
Q ss_pred cC
Q psy14284 81 SE 82 (149)
Q Consensus 81 ~~ 82 (149)
..
T Consensus 420 ~~ 421 (453)
T KOG2693|consen 420 ES 421 (453)
T ss_pred hc
Confidence 53
No 5
>KOG2694|consensus
Probab=99.29 E-value=1.2e-12 Score=104.94 Aligned_cols=78 Identities=47% Similarity=0.625 Sum_probs=65.2
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCcchh----hHHHHHHHHHHHHHHHHHh
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGPCMT----CGLWVLAGLLVFIVAEKAF 76 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p~~~----~~l~~~~G~~l~~~l~~ll 76 (149)
||||||+|||+||+++|++||.|...++.++....+|+++++-..... .|+.+ |.+.|.+|.|+++++.+++
T Consensus 252 HEIPHEvgDFAILLRagF~rw~Aa~aQL~TA~~GlLGalvAi~g~~g~----~pa~E~~tsw~lPFTaGGFL~IALv~vL 327 (361)
T KOG2694|consen 252 HEIPHEVGDFAILLRAGFGRWNAALAQLTTAAFGLLGALVAIHGHTGN----VPAIETRTSWLLPFTAGGFLNIALVEVL 327 (361)
T ss_pred hhccchhhhhHHHHHhccchhHHHHHHHHHHHHHHhhhHHHhhcCcCC----chhhhhhcceeeeeccCceeehhHHHhh
Confidence 999999999999999999999999999999999999999987533221 13333 3556889999999999999
Q ss_pred cccccC
Q psy14284 77 NVERSE 82 (149)
Q Consensus 77 p~~~~~ 82 (149)
|+...+
T Consensus 328 Pdll~E 333 (361)
T KOG2694|consen 328 PDLLAE 333 (361)
T ss_pred hHhhhc
Confidence 987643
No 6
>KOG2693|consensus
Probab=99.23 E-value=3.1e-12 Score=109.99 Aligned_cols=47 Identities=34% Similarity=0.598 Sum_probs=45.0
Q ss_pred CCcchhHHHHHHHHHhhhhchhHHHHHHHhhhhhhhHHHHHHHHhcC
Q psy14284 103 PHPVQMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTTFAILSK 149 (149)
Q Consensus 103 ~~~~~~~~~l~~~~~~~Hnf~~Glaig~~f~~~~~~G~~~~~ai~~H 149 (149)
...++.++||++++|++|||+||||||+||..+...|++|++||+||
T Consensus 297 ~~~l~~~aymil~gD~~HNFtDGLAiGAaF~~s~~~G~sTsiAVlcH 343 (453)
T KOG2693|consen 297 VEELKKVAYMILAGDGLHNFTDGLAIGAAFTSSLLHGISTSLAVLCH 343 (453)
T ss_pred ccchhhHhHHHHhccccccchhhhhhccccccccchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999998
No 7
>PRK04201 zinc transporter ZupT; Provisional
Probab=99.19 E-value=4.5e-11 Score=96.48 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcccc
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVER 80 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p~~~~~l~~~~G~~l~~~l~~llp~~~ 80 (149)
||+||++++.+++.+++.+++|++.+++++++++++|+++++++.+....+ ....+.+.+.+|.++|+.+++++|+.+
T Consensus 161 H~iPeg~a~~~~l~~~~~s~~~~~~~~~~~~l~~p~G~~~g~~~~~~~~~~--~~~~~~l~~aaG~~lyv~~~el~pea~ 238 (265)
T PRK04201 161 HNIPEGIAVAVPVYYATGSKKKAFLYSFLSGLAEPLGAVLGYLLLGPFISP--VVMGAIFAAVAGIMVFISLDELLPAAK 238 (265)
T ss_pred hcCcHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999886431111 123466789999999999999999876
Q ss_pred c
Q psy14284 81 S 81 (149)
Q Consensus 81 ~ 81 (149)
+
T Consensus 239 ~ 239 (265)
T PRK04201 239 E 239 (265)
T ss_pred h
Confidence 4
No 8
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1e-10 Score=94.64 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=71.8
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcccc
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVER 80 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p~~~~~l~~~~G~~l~~~l~~llp~~~ 80 (149)
||+|||++++.+|..++++++|++.++.++++...+|+++|++..+.+.+ +.+.+.+.+.+|.++|+.+++++|+.+
T Consensus 160 hnipEG~av~~pL~~~~~s~~~~l~~~~lsg~~~~lgavig~~~~~~~~~---~~l~~~la~aaG~mv~v~~~eliPea~ 236 (266)
T COG0428 160 HNIPEGLAVALPLAGAGRSRLKALLVAVLSGLAEPLGAVIGAYLLGISSP---LVLPFALAFAAGAMVYVVVDELLPEAK 236 (266)
T ss_pred hccccHHHHHHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhcchhhhHHHHhhHHH
Confidence 89999999999999999999999999999999999999999998876641 246678889999999999999999988
Q ss_pred cC
Q psy14284 81 SE 82 (149)
Q Consensus 81 ~~ 82 (149)
++
T Consensus 237 ~~ 238 (266)
T COG0428 237 RH 238 (266)
T ss_pred hc
Confidence 65
No 9
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.02 E-value=2.9e-09 Score=86.49 Aligned_cols=127 Identities=18% Similarity=0.192 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhHHhhhhhHhhhccCCCCCC-CCc--------chhhHHHHHHHHHHHHHHHHHhcccc------cCccc
Q psy14284 21 WDATKAQLYTSCAGLVGALTAISCSGVTDEV-DGP--------CMTCGLWVLAGLLVFIVAEKAFNVER------SEEGE 85 (149)
Q Consensus 21 ~~al~~~~l~al~t~lGal~g~~~~~~~~~~-~~p--------~~~~~l~~~~G~~l~~~l~~llp~~~------~~~~~ 85 (149)
.+.+.+....+.+.++|+.+..++.+..+.. ..+ ......++++|+++++.+|+++.... .+.+.
T Consensus 35 ~~~l~~~~~fa~GvlL~~a~~hLLPea~~~~~~~~~~~~~~~~~~~~~~~~~~Gfl~~~~ie~i~~~~~~~~~~~~~~~~ 114 (317)
T PF02535_consen 35 KRILSLLNAFAAGVLLGTAFLHLLPEAIEALESSGCFGEFGHSYPLAFLIFLVGFLLFFFIERILHSIFEHDHSHSHDHS 114 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchhhcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 4455666666678888888877776654321 000 12245678999999999999994321 11111
Q ss_pred hhh--cc----------c-----C--------CC--CCCC-----CCCCCCcch--hHHHHHHHHHhhhhchhHHHHHHH
Q psy14284 86 EKA--DK----------T-----N--------GG--SDVN-----ANKVPHPVQ--MSGYLNLMANSIDNFTHGLAVGGS 131 (149)
Q Consensus 86 ~~~--~~----------~-----~--------~~--~~~~-----~~~~~~~~~--~~~~l~~~~~~~Hnf~~Glaig~~ 131 (149)
++. +. . + ++ ++++ ..+..++.+ +.+|+.++++++|||+||+++|++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Hs~~eGl~ig~~ 194 (317)
T PF02535_consen 115 HSHSSSELNSDEPSNSVSSSEIEDDSNSEHSDQNSHHSHSSHSHSHHDDKSGVSQNIRALILLIALSIHSFFEGLAIGAA 194 (317)
T ss_pred ccccccccccccccCccccccccCCcccccccccccccccccccccccccchhhhhHHHHHHHHHHHhhcchhhhhhhcc
Confidence 000 00 0 0 00 0000 000011112 349999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHhcC
Q psy14284 132 FLISLRVGLLTTFAILSK 149 (149)
Q Consensus 132 f~~~~~~G~~~~~ai~~H 149 (149)
+..+. ++.+++||.+|
T Consensus 195 ~~~~~--~~~~~~ai~~H 210 (317)
T PF02535_consen 195 FSSDS--GWSLFIAIILH 210 (317)
T ss_pred hhhhh--HHHHHHHHHHh
Confidence 98776 99999999998
No 10
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.01 E-value=3.7e-10 Score=91.75 Aligned_cols=82 Identities=26% Similarity=0.274 Sum_probs=67.2
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCc-chhhHHHHHHHHHHHHHHHHHhccc
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGP-CMTCGLWVLAGLLVFIVAEKAFNVE 79 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p-~~~~~l~~~~G~~l~~~l~~llp~~ 79 (149)
||+||++++..+|+++|.++++++.++++.++++++|+++|+++.+.......+ ...+.+.+.+|.++|+.+.+++|+.
T Consensus 210 Hk~~e~~~~~~~l~~~~~~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~ell~~~ 289 (317)
T PF02535_consen 210 HKIPEGFALGSILVKAGFSKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAFVELLPEE 289 (317)
T ss_pred hHhHHHhhhhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999992222111101 1334567899999999999999986
Q ss_pred ccC
Q psy14284 80 RSE 82 (149)
Q Consensus 80 ~~~ 82 (149)
.++
T Consensus 290 ~~~ 292 (317)
T PF02535_consen 290 FHN 292 (317)
T ss_pred Hhc
Confidence 653
No 11
>PLN02159 Fe(2+) transport protein
Probab=98.58 E-value=1.5e-07 Score=78.59 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCC---cchhhHHHHHHHHHHHHHHHHHhc
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDG---PCMTCGLWVLAGLLVFIVAEKAFN 77 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~---p~~~~~l~~~~G~~l~~~l~~llp 77 (149)
||+||++++...+.++++++++.+.+.++.+++|++|..+|+.+.+..+.... ....+...+.+|+++|+.+.+++|
T Consensus 222 Hk~~eg~aLg~~L~~~~~~~~~~~~~~~~fal~tPiG~~iG~~v~~~~~~~~~~~~~~~gil~a~aaG~flYv~~~Ell~ 301 (337)
T PLN02159 222 HQMFEGMGLGGCILQAEYTNVKKFLMAFFFAVTTPFGIFLGIALSSIYRDNSPTALITVGLLNACSAGLLIYMALVDLLA 301 (337)
T ss_pred HhhHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988664221100 112345678999999999999999
Q ss_pred ccc
Q psy14284 78 VER 80 (149)
Q Consensus 78 ~~~ 80 (149)
+..
T Consensus 302 ~e~ 304 (337)
T PLN02159 302 AEF 304 (337)
T ss_pred HHh
Confidence 643
No 12
>TIGR00820 zip ZIP zinc/iron transport family. transport has not been characterized, but these systems probably function as secondary carriers.
Probab=98.52 E-value=1.7e-07 Score=77.83 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=65.1
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCc----chhhHHHHHHHHHHHHHHHHHh
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGP----CMTCGLWVLAGLLVFIVAEKAF 76 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p----~~~~~l~~~~G~~l~~~l~~ll 76 (149)
||+||++++.+.+.+++.++++++.+.++.+++|++|.++|+.+.+..+.. .| ...+...+.+|+++|+.+.+++
T Consensus 209 Hk~~eg~alg~~l~~~~~~~~~~~~~~~~fsl~tPiG~~iG~~~~~~~~~~-~~~~~~~~gil~~~aaG~flYv~~~Ell 287 (324)
T TIGR00820 209 HQFFEGLGLGGCISQAEFKCKSVTIMCTFFAVTTPLGIAIGMGISSSYDDS-SPTALIVEGVLNAASAGILIYMALVDLL 287 (324)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887532111 11 1234456899999999999999
Q ss_pred ccc
Q psy14284 77 NVE 79 (149)
Q Consensus 77 p~~ 79 (149)
|+.
T Consensus 288 ~~e 290 (324)
T TIGR00820 288 AAD 290 (324)
T ss_pred HHH
Confidence 864
No 13
>PLN02159 Fe(2+) transport protein
Probab=97.75 E-value=4.9e-05 Score=63.68 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhhhhchhHHHHHHHhhhhhhhHHHHHHHHhcC
Q psy14284 108 MSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTTFAILSK 149 (149)
Q Consensus 108 ~~~~l~~~~~~~Hnf~~Glaig~~f~~~~~~G~~~~~ai~~H 149 (149)
...|+..+|+++|||+||+++|.++..+...|+.. ||.+|
T Consensus 183 ~~a~~l~~gl~lHS~~eGlalG~~~~~~~~~~l~~--AI~~H 222 (337)
T PLN02159 183 VIAMVLELGIIVHSVVIGLSLGATNDTCTIKGLIA--ALCFH 222 (337)
T ss_pred HHHHHHHHHHHHHHHHhchhhhcCCCchhHHHHHH--HHHHH
Confidence 45699999999999999999999998777777644 66666
No 14
>TIGR00820 zip ZIP zinc/iron transport family. transport has not been characterized, but these systems probably function as secondary carriers.
Probab=97.51 E-value=0.00017 Score=60.03 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhhhhchhHHHHHHHhhhhhhhHHHHHHHHhcC
Q psy14284 108 MSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTTFAILSK 149 (149)
Q Consensus 108 ~~~~l~~~~~~~Hnf~~Glaig~~f~~~~~~G~~~~~ai~~H 149 (149)
...++..+|+++||++||+++|+++.. ...+.+.+||.+|
T Consensus 170 ~~~~~l~~gl~~Hs~~eGlalG~~~~~--~~~~~l~~Ai~~H 209 (324)
T TIGR00820 170 VVAQVLELGIIVHSVVIGLSLGASQSP--DTIKPLIAALSFH 209 (324)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhccCc--chHHHHHHHHHHH
Confidence 357888999999999999999999743 4457778888887
No 15
>KOG2474|consensus
Probab=96.90 E-value=0.00016 Score=61.28 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHH-HHhHHhhhhhHhhhccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhccc
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLY-TSCAGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVE 79 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l-~al~t~lGal~g~~~~~~~~~~~~p~~~~~l~~~~G~~l~~~l~~llp~~ 79 (149)
||+||+++...++..++.+||||+++.-. .++.-++|.+.++.......-. ...+.+.+.+|+++|..++.++|+.
T Consensus 298 ~nf~Eglavslpl~~a~~Sr~~afl~~a~~g~~s~~lGll~a~~v~la~~ig---l~~~~~a~aaG~ml~~~~~~~i~~a 374 (406)
T KOG2474|consen 298 HNFVEGLAVSLPLAGAGFSRLKAFLYGAVLGGVSPPLGLLIAFAVFLAEPIG---LLPYALAFAAGAMLYVVLDDIIPEA 374 (406)
T ss_pred hcccccceeeeehhhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCccc---hhhHHHHHhccceEEEEeccccccc
Confidence 79999999999999999999999987554 4456677888877765533111 2456678999999999999999998
Q ss_pred ccCcc
Q psy14284 80 RSEEG 84 (149)
Q Consensus 80 ~~~~~ 84 (149)
..+++
T Consensus 375 ~~~~~ 379 (406)
T KOG2474|consen 375 QRSDN 379 (406)
T ss_pred ccccc
Confidence 76543
No 16
>KOG1558|consensus
Probab=96.14 E-value=0.012 Score=49.14 Aligned_cols=78 Identities=23% Similarity=0.200 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCcc--hhhHHHHHHHHHHHHHHHHHhccccc
Q psy14284 4 PHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGPC--MTCGLWVLAGLLVFIVAEKAFNVERS 81 (149)
Q Consensus 4 P~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p~--~~~~l~~~~G~~l~~~l~~llp~~~~ 81 (149)
=++++-=.-+.+++.+.+.++.+.++.++.|++|..+|..+.+..++...+. ..+.-.+.+|+++|+.+.+++|....
T Consensus 217 fegf~lG~~l~~a~~~~~~~~~~~~~fslttPiGi~iG~~i~~~~~~s~~~~i~~gvL~alAaGtliY~~lvElla~ef~ 296 (327)
T KOG1558|consen 217 FEGFGLGGCLLQAGFTFKSAVLMALFFSLTTPIGIALGIGISSSYENSPGALITSGVLEALAAGTLIYVALVELLAAEFA 296 (327)
T ss_pred HHHhcccHHHhhcccchHHHHHHHHHHHHHhHHHHHHHHHhcccccCCchhHHHHHHHHHHhhhHhHHHHHHHHhHHHhc
Confidence 3455555567888999999999999999999999999999988622211111 11234588999999999999996543
No 17
>KOG1558|consensus
Probab=94.60 E-value=0.16 Score=42.59 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHhhhhchhHHHHHHHhhhhhhhHHHHHHHHhcC
Q psy14284 107 QMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTTFAILSK 149 (149)
Q Consensus 107 ~~~~~l~~~~~~~Hnf~~Glaig~~f~~~~~~G~~~~~ai~~H 149 (149)
....+...+|+.+|.+-||+|+|++-. ...=+..-.|+.+|
T Consensus 174 ~~~~~iL~lgi~~HSvfeGlalGv~~~--~~ti~~L~~al~fH 214 (327)
T KOG1558|consen 174 RLRSLILELGLSFHSVFEGLALGVQDS--VSTIWTLFLALSFH 214 (327)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccccCC--HHHHHHHHHHHHHH
Confidence 566788899999999999999998753 33445556666655
No 18
>KOG3907|consensus
Probab=91.81 E-value=0.0054 Score=49.39 Aligned_cols=84 Identities=12% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCchhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCC-CCc-chhhHHHHHHHHHHHHHHHHHhcc
Q psy14284 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEV-DGP-CMTCGLWVLAGLLVFIVAEKAFNV 78 (149)
Q Consensus 1 HeiP~elgd~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~-~~p-~~~~~l~~~~G~~l~~~l~~llp~ 78 (149)
|..|--+|-...|++.+.-||+.-.=.++.++++++|.+.-++......++ ... +....+.+.+|.|+|.+...++||
T Consensus 182 HKaPAafgLvSfll~e~l~r~~Irkhl~lFa~saPl~~ivt~lli~q~s~~m~~~satGvlmLfSaGtfLYvatvhvlpe 261 (303)
T KOG3907|consen 182 HKAPAAFGLVSFLLHENLDRWEIRKHLVLFALSAPLGYIVTYLLILQHSKTMLSESATGVLMLFSAGTFLYVATVHVLPE 261 (303)
T ss_pred hcccHHHHHHHHHHHhhhHHHHHhhheEEEeccCcHHHHHHHHhhhccChhhhhhhhcceeeeecCCeeEEEEEEEEccc
Confidence 889999999999999999999998889999999999999987764432221 110 111234577999999999999998
Q ss_pred cccCcc
Q psy14284 79 ERSEEG 84 (149)
Q Consensus 79 ~~~~~~ 84 (149)
...+++
T Consensus 262 ~~~~dh 267 (303)
T KOG3907|consen 262 LSHTDH 267 (303)
T ss_pred cCCCCc
Confidence 755444
No 19
>PRK11469 hypothetical protein; Provisional
Probab=91.03 E-value=4.9 Score=30.92 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhhhhchhHHHHHH
Q psy14284 108 MSGYLNLMANSIDNFTHGLAVGG 130 (149)
Q Consensus 108 ~~~~l~~~~~~~Hnf~~Glaig~ 130 (149)
+...+..++.++.|+.-|+..+.
T Consensus 106 ~~~l~LaiAtSiDAlavGi~~~~ 128 (188)
T PRK11469 106 WLLVTTAIATSLDAMAVGVGLAF 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999988886543
No 20
>COG1971 Predicted membrane protein [Function unknown]
Probab=83.43 E-value=19 Score=27.99 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhhhhchhHHHHH
Q psy14284 107 QMSGYLNLMANSIDNFTHGLAVG 129 (149)
Q Consensus 107 ~~~~~l~~~~~~~Hnf~~Glaig 129 (149)
.+...++.++.++.|++-|+..+
T Consensus 107 ~~~~~~laiatSidal~vG~~~a 129 (190)
T COG1971 107 FKELILLAIATSIDALAVGVGLA 129 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Confidence 34456788899999988776543
No 21
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=82.77 E-value=20 Score=27.82 Aligned_cols=28 Identities=4% Similarity=-0.138 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHhHHhhhhhHhhhccC
Q psy14284 19 TKWDATKAQLYTSCAGLVGALTAISCSG 46 (149)
Q Consensus 19 s~~~al~~~~l~al~t~lGal~g~~~~~ 46 (149)
+.+.++...+++++.+.+|..+|..+.+
T Consensus 29 ~~~~~l~ig~~~~~~~~lg~~~G~~~~~ 56 (206)
T TIGR02840 29 PFLSNLIIAVISGLFIFISMLLGKFLAK 56 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888888888877777765
No 22
>KOG2474|consensus
Probab=53.97 E-value=20 Score=30.93 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=46.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhc
Q psy14284 12 ILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFN 77 (149)
Q Consensus 12 ~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~~~~~~~~p~~~~~l~~~~G~~l~~~l~~llp 77 (149)
++.+.-.+.+++++.+++.+..|.+|+...++....+.+ .....+.+.+|++++....-.+.
T Consensus 37 ~l~~~~~sv~~all~tl~~~~~tslga~~vv~~~~~~~~----~l~~~lGfAaGvmLaaSf~S~l~ 98 (406)
T KOG2474|consen 37 LLIRGINSVRQALLGTLLLGGLTSLGAAYVVLVEANSRK----VLDISLGFAAGVMLAASFWSLLA 98 (406)
T ss_pred HhccccchHHHHHHHHHHHHHHHhcccceEEEEecCchh----hhhhhhchhhhHHHHHHHHHhhc
Confidence 456666788999999999999999999887666554433 23445568889998888875443
No 23
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=40.81 E-value=1.3e+02 Score=24.26 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHh
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTA 41 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g 41 (149)
+..+-.|+++++|..++++.+.++.+|+-+-
T Consensus 170 ~~~l~~G~~r~~A~~fSFllsiP~ilga~~l 200 (259)
T PF02673_consen 170 TAGLLLGLDREEAARFSFLLSIPAILGAGLL 200 (259)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999999998763
No 24
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=34.59 E-value=83 Score=20.69 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q psy14284 7 VGDFAILLRAGFTKWDATKA 26 (149)
Q Consensus 7 lgd~~~Ll~~G~s~~~al~~ 26 (149)
--|++++..-|+++++....
T Consensus 27 ~~~~~il~~lG~s~~~i~~~ 46 (121)
T PF02687_consen 27 RREIAILRALGASKRQIRKM 46 (121)
T ss_pred HHHHHHHHHcCCChhhhhHH
Confidence 34778899999998875554
No 25
>PF12672 DUF3793: Protein of unknown function (DUF3793); InterPro: IPR024523 This family of bacterial proteins is functionally uncharacterised. The proteins in this family contain two conserved sequence motifs: PHE and LGYP.
Probab=32.65 E-value=18 Score=27.50 Aligned_cols=16 Identities=50% Similarity=0.908 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHHcCCCHHH
Q psy14284 2 EIPHEVGDFAILLRAGFTKWD 22 (149)
Q Consensus 2 eiP~elgd~~~Ll~~G~s~~~ 22 (149)
|.|||+|.| -|++...
T Consensus 104 ~FPHEIGiF-----LGYPleD 119 (176)
T PF12672_consen 104 EFPHEIGIF-----LGYPLED 119 (176)
T ss_pred CCCchhHhc-----cCCCHHH
Confidence 589999997 3776654
No 26
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=30.58 E-value=1e+02 Score=19.03 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHhHHhhhhhHhhhccC
Q psy14284 17 GFTKWDATKAQLYTSCAGLVGALTAISCSG 46 (149)
Q Consensus 17 G~s~~~al~~~~l~al~t~lGal~g~~~~~ 46 (149)
+.++++.+...+..++.+++-.++|+++++
T Consensus 16 ~~~~~~~~~~~~~ig~~~~~~~~~G~~~G~ 45 (67)
T PF02659_consen 16 GISRRIILLIALIIGIFQFIMPLLGLLLGR 45 (67)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444444433
No 27
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=29.49 E-value=12 Score=26.32 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=9.1
Q ss_pred HHHhhhhchhH
Q psy14284 115 MANSIDNFTHG 125 (149)
Q Consensus 115 ~~~~~Hnf~~G 125 (149)
+||.+|+||.|
T Consensus 35 vGDniH~LPhG 45 (104)
T PF01307_consen 35 VGDNIHSLPHG 45 (104)
T ss_pred CCCCCCCCCCC
Confidence 47889999987
No 28
>KOG3907|consensus
Probab=29.25 E-value=4.7 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=29.0
Q ss_pred HHHHHhhhhchhHHHHHHHhhh-hhhhHHHHHHHHhcC
Q psy14284 113 NLMANSIDNFTHGLAVGGSFLI-SLRVGLLTTFAILSK 149 (149)
Q Consensus 113 ~~~~~~~Hnf~~Glaig~~f~~-~~~~G~~~~~ai~~H 149 (149)
..+|..+|-..||.|.|++... ...+=+...+||.+|
T Consensus 145 ~tlgLvVHaaaDGVALGaaattn~~svqiIVfvAImlH 182 (303)
T KOG3907|consen 145 VTLGLVVHAAADGVALGAAATTNNDSVQIIVFVAIMLH 182 (303)
T ss_pred eEEEEEEeeccccceecccccccCCcEEEeehhHHHHh
Confidence 3568889999999999987665 456667778888877
No 29
>COG1238 Predicted membrane protein [Function unknown]
Probab=28.57 E-value=75 Score=23.96 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=23.7
Q ss_pred cchhHHHHHHHHHhhhhchhHHHHHHHhhh
Q psy14284 105 PVQMSGYLNLMANSIDNFTHGLAVGGSFLI 134 (149)
Q Consensus 105 ~~~~~~~l~~~~~~~Hnf~~Glaig~~f~~ 134 (149)
...+.|+..++.-.+==+||=+.+.++++.
T Consensus 99 ~~~ryg~~~ll~s~lp~igd~~t~~aG~~~ 128 (161)
T COG1238 99 WYRRYGVWTLLLSWLPPIGDVLTLLAGWLR 128 (161)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 346778888888888888888888888765
No 30
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=28.12 E-value=52 Score=27.33 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhchhHHHHHHHhhh
Q psy14284 111 YLNLMANSIDNFTHGLAVGGSFLI 134 (149)
Q Consensus 111 ~l~~~~~~~Hnf~~Glaig~~f~~ 134 (149)
=+.+++|+.|++.|=++++.|..+
T Consensus 47 SlaLLADa~Hml~D~~al~lal~A 70 (296)
T COG1230 47 SLALLADALHMLSDALALLLALIA 70 (296)
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356899999999999999998755
No 31
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=25.71 E-value=1.5e+02 Score=24.97 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHH-----HHHhHHhhhhhHhhh
Q psy14284 5 HEVGDFAILLRAGFTKWDATKAQL-----YTSCAGLVGALTAIS 43 (149)
Q Consensus 5 ~elgd~~~Ll~~G~s~~~al~~~~-----l~al~t~lGal~g~~ 43 (149)
|...++++|..-|.++++.+..-+ ++.++..+|..+++.
T Consensus 286 er~~EigiLrAlGa~~~~I~~~~l~Ea~ll~~iG~~~G~~lg~~ 329 (380)
T TIGR01185 286 DHLSEYATLKAIGYTQKYLLGVILQEALLLACLGYLPGWGFAIL 329 (380)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999877555432 333345555555543
No 32
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=25.67 E-value=1.5e+02 Score=24.73 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHH
Q psy14284 5 HEVGDFAILLRAGFTKWDATKAQ 27 (149)
Q Consensus 5 ~elgd~~~Ll~~G~s~~~al~~~ 27 (149)
|..-++++|..-|+++++....-
T Consensus 292 eR~rEigiLralG~~~~~I~~~~ 314 (399)
T PRK10814 292 EKQGEVAILQTQGLTRRQIMMVF 314 (399)
T ss_pred HHHHHHHHHHHcCCChHHHHHHH
Confidence 34457788999999998765543
No 33
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=24.77 E-value=1.4e+02 Score=24.68 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHh-HHhhhhhHh
Q psy14284 4 PHEVGDFAILLRAGFTKWDATKAQLYTSC-AGLVGALTA 41 (149)
Q Consensus 4 P~elgd~~~Ll~~G~s~~~al~~~~l~al-~t~lGal~g 41 (149)
.|..-++++|..=|+++++....-+.-++ .+++|+++|
T Consensus 293 ~eR~rEigilralG~~~~~I~~~~l~E~~~l~l~g~~~G 331 (411)
T TIGR02212 293 KDKQGDIAILRTLGATPGQIMRIFIVQGLLIGVIGTLLG 331 (411)
T ss_pred HHhhhHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566778899999999886665444443 334444443
No 34
>COG2119 Predicted membrane protein [Function unknown]
Probab=21.96 E-value=3.9e+02 Score=20.83 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=35.6
Q ss_pred hHHHH----HHHHHcCCCHHHHHHHHHH-HHhHHhhhhhHhhhccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcccc
Q psy14284 6 EVGDF----AILLRAGFTKWDATKAQLY-TSCAGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVER 80 (149)
Q Consensus 6 elgd~----~~Ll~~G~s~~~al~~~~l-~al~t~lGal~g~~~~~~~~~~~~p~~~~~l~~~~G~~l~~~l~~llp~~~ 80 (149)
|+||= +.++..-++|+..+.-... +...+.+.+++|....+.-. .....|+.+=.|+.+.+-.++|..+
T Consensus 15 EiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~------~~~~~~~~~~~Flafav~~l~edk~ 88 (190)
T COG2119 15 EIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLP------ERPLAWASGVLFLAFAVWMLIEDKE 88 (190)
T ss_pred HhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCc------hhHHHHHHHHHHHHHHHHHhccccc
Confidence 66663 3344555665544332222 22366777777776666421 1234455554555666656666443
No 35
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=20.00 E-value=1.2e+02 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHhhhhhHhhhccCCCC
Q psy14284 23 ATKAQLYTSCAGLVGALTAISCSGVTD 49 (149)
Q Consensus 23 al~~~~l~al~t~lGal~g~~~~~~~~ 49 (149)
.+...+-..++.++|+++|++++..-+
T Consensus 7 i~g~~~G~~~~g~~Ga~~G~~~Gh~~d 33 (267)
T PRK09430 7 ILGFAFGFLFGGFFGALLGLLIGHMFD 33 (267)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhHHh
Confidence 333334444467888888888776543
Done!