Query psy14284
Match_columns 149
No_of_seqs 182 out of 971
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 15:57:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 13.2 2.7E+02 0.0094 21.6 4.9 43 26-72 282-327 (339)
2 3iyz_A Aquaporin-4; water tran 9.3 3.8E+02 0.013 21.5 4.5 36 10-45 119-154 (340)
3 3cn5_A Aquaporin; membrane pro 9.3 4E+02 0.014 20.9 4.6 35 10-44 129-163 (304)
4 2w2e_A AQY1, aquaporin, aquapo 9.2 4.1E+02 0.014 20.4 4.6 36 10-45 117-152 (279)
5 1j4n_A Aquaporin 1; membrane p 9.2 4.1E+02 0.014 20.2 4.6 35 11-45 84-118 (271)
6 3gd8_A Aquaporin-4; proton exc 8.9 4.5E+02 0.015 19.3 4.6 35 11-45 72-106 (223)
7 3llq_A Aquaporin Z 2; aquapori 8.6 3.5E+02 0.012 20.6 3.9 34 11-44 97-130 (256)
8 2o9g_A Aquaporin Z; integral m 8.5 4.7E+02 0.016 19.4 4.6 34 11-44 72-105 (234)
9 3d9s_A Aquaporin-5, AQP-5; aqu 8.4 4.7E+02 0.016 19.9 4.6 35 11-45 76-110 (266)
10 2ls4_A High affinity copper up 10.9 82 0.0028 15.8 0.0 16 31-46 6-21 (26)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=13.17 E-value=2.7e+02 Score=21.59 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=19.6
Q ss_pred HHHHHHh---HHhhhhhHhhhccCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy14284 26 AQLYTSC---AGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVA 72 (149)
Q Consensus 26 ~~~l~al---~t~lGal~g~~~~~~~~~~~~p~~~~~l~~~~G~~l~~~l 72 (149)
++.++.+ .|++.++.|.-+...++. ...++.|++.|+++.+++
T Consensus 282 LTiit~IflP~T~IaGiyGMNf~~mPel----~~~~gy~~~l~~m~~~~~ 327 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGMNFSYLPLA----NNPQGFWLVMALMVVIIM 327 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTCCCSCCTTS----SCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCCCCc----cCchHHHHHHHHHHHHHH
Confidence 4444444 555555555544433322 123455655554444333
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=9.35 E-value=3.8e+02 Score=21.50 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=28.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhcc
Q psy14284 10 FAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCS 45 (149)
Q Consensus 10 ~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~ 45 (149)
++..+...++.++++.|...--+++++|+.+.+...
T Consensus 119 lal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~ 154 (340)
T 3iyz_A 119 VAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVT 154 (340)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666778999999998888889999998876653
No 3
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=9.27 E-value=4e+02 Score=20.87 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=27.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhc
Q psy14284 10 FAILLRAGFTKWDATKAQLYTSCAGLVGALTAISC 44 (149)
Q Consensus 10 ~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~ 44 (149)
++..+...++.+++..|...--++.++|+.+.+..
T Consensus 129 la~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 163 (304)
T 3cn5_A 129 FGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667889999999988888999998887765
No 4
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=9.21 E-value=4.1e+02 Score=20.45 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhcc
Q psy14284 10 FAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCS 45 (149)
Q Consensus 10 ~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~ 45 (149)
++..+...++.+++..|-..--+++++|+.+.+..-
T Consensus 117 la~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~ 152 (279)
T 2w2e_A 117 LALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMT 152 (279)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566778899999998888889999988877654
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=9.18 E-value=4.1e+02 Score=20.24 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=27.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhcc
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTAISCS 45 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~ 45 (149)
+..+...++.++++.|-..--++.++|+.+.+...
T Consensus 84 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 118 (271)
T 1j4n_A 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (271)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566778999999998888889999988877653
No 6
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=8.86 E-value=4.5e+02 Score=19.34 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=27.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhcc
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTAISCS 45 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~ 45 (149)
+..+...++.+++..+...--++.++|+.+.+...
T Consensus 72 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~ 106 (223)
T 3gd8_A 72 AMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVT 106 (223)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566778999999998888889999988876543
No 7
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=8.64 E-value=3.5e+02 Score=20.60 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=26.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhc
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTAISC 44 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~ 44 (149)
+..+...++.+++..+...--+++++|+.+.+..
T Consensus 97 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 97 GLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888889888888888889998887654
No 8
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=8.55 E-value=4.7e+02 Score=19.38 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=26.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhc
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTAISC 44 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~ 44 (149)
+..+...++.+++..|-..--++.++|+.+.+..
T Consensus 72 a~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 72 GLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888899988888888888888876655
No 9
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=8.35 E-value=4.7e+02 Score=19.89 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=27.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhcc
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTAISCS 45 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~ 45 (149)
+..+...++.+++..+-..--++.++|+.+.+..-
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~ 110 (266)
T 3d9s_A 76 ALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVA 110 (266)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566778899999998888889999988877653
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=10.91 E-value=82 Score=15.75 Aligned_cols=16 Identities=25% Similarity=-0.056 Sum_probs=10.2
Q ss_pred HhHHhhhhhHhhhccC
Q psy14284 31 SCAGLVGALTAISCSG 46 (149)
Q Consensus 31 al~t~lGal~g~~~~~ 46 (149)
-++..+|+.+|+++-.
T Consensus 6 ~iavvlGa~~Gyf~F~ 21 (26)
T 2ls4_A 6 CIAVAAGAGTGYFLFS 21 (26)
Confidence 3455677777776643
Done!