Query psy14284
Match_columns 149
No_of_seqs 182 out of 971
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 15:57:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14284.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14284hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ymga1 f.19.1.1 (A:6-239) Aqu 9.5 2.3E+02 0.016 19.1 5.0 37 10-46 68-104 (234)
2 d1fx8a_ f.19.1.1 (A:) Glycerol 6.1 3.1E+02 0.022 18.6 4.4 34 11-44 69-102 (254)
3 d1rc2a_ f.19.1.1 (A:) Aquapori 5.1 2.8E+02 0.021 18.3 3.5 35 11-45 69-103 (231)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 4.8 1.9E+02 0.014 13.5 1.5 10 125-134 17-26 (32)
5 d2qfia2 f.59.1.1 (A:5-208) Fer 4.1 77 0.0056 21.0 -0.4 22 113-134 34-55 (204)
6 d2iuba2 f.17.3.1 (A:286-349) M 4.0 3.2E+02 0.024 14.3 3.3 21 25-45 11-31 (64)
7 d1n1ea1 a.100.1.6 (A:198-357) 3.7 2.9E+02 0.021 17.3 2.6 25 5-29 62-86 (160)
8 d2np5a2 a.121.1.1 (A:78-195) T 3.6 2.8E+02 0.02 16.2 2.2 20 114-133 71-90 (118)
9 d1j4na_ f.19.1.1 (A:) Aquapori 3.5 6.1E+02 0.044 16.7 4.6 36 11-46 84-119 (249)
10 d1eysh2 f.23.10.1 (H:7-43) Pho 3.4 3.3E+02 0.024 13.3 2.4 18 58-75 11-29 (37)
No 1
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.48 E-value=2.3e+02 Score=19.10 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=29.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccC
Q psy14284 10 FAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSG 46 (149)
Q Consensus 10 ~~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~ 46 (149)
++..+....+.++++.+-..--++.++|+++.+....
T Consensus 68 la~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~ 104 (234)
T d1ymga1 68 FAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTP 104 (234)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhccCCChhheeeeeehHHHHHHHHHHHHHHHcC
Confidence 3456677899999999999888999999988776654
No 2
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=6.09 E-value=3.1e+02 Score=18.55 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=24.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhc
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTAISC 44 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~ 44 (149)
+..+....+.++++.+...--++.++|+++.+..
T Consensus 69 a~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 69 ALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888888887777778887776543
No 3
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=5.14 E-value=2.8e+02 Score=18.29 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=25.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhcc
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTAISCS 45 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~ 45 (149)
+..+....+.++++.+...--+++++|+++.+...
T Consensus 69 a~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~ 103 (231)
T d1rc2a_ 69 GLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA 103 (231)
T ss_dssp HHHHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667788888888888788888887766553
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.76 E-value=1.9e+02 Score=13.48 Aligned_cols=10 Identities=60% Similarity=0.843 Sum_probs=6.2
Q ss_pred HHHHHHHhhh
Q psy14284 125 GLAVGGSFLI 134 (149)
Q Consensus 125 Glaig~~f~~ 134 (149)
|+|+|.-|..
T Consensus 17 giavgiifai 26 (32)
T d2e74e1 17 GIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhheeeE
Confidence 6666666644
No 5
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=4.14 E-value=77 Score=21.04 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=17.8
Q ss_pred HHHHHhhhhchhHHHHHHHhhh
Q psy14284 113 NLMANSIDNFTHGLAVGGSFLI 134 (149)
Q Consensus 113 ~~~~~~~Hnf~~Glaig~~f~~ 134 (149)
.+++|++||+.|-+.....+..
T Consensus 34 allada~~s~~D~~~~~~~l~~ 55 (204)
T d2qfia2 34 SILAALVDSLVDIGASLTNLLV 55 (204)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999988777653
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.00 E-value=3.2e+02 Score=14.28 Aligned_cols=21 Identities=0% Similarity=-0.058 Sum_probs=9.0
Q ss_pred HHHHHHHhHHhhhhhHhhhcc
Q psy14284 25 KAQLYTSCAGLVGALTAISCS 45 (149)
Q Consensus 25 ~~~~l~al~t~lGal~g~~~~ 45 (149)
..+.+..-.|++.++.|.-..
T Consensus 11 ~it~iflP~t~i~gifGMN~~ 31 (64)
T d2iuba2 11 IIATIFMPLTFIAGIYGMNFE 31 (64)
T ss_dssp HHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHhhhccCCC
Confidence 344444445666666655443
No 7
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=3.75 E-value=2.9e+02 Score=17.34 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHH
Q psy14284 5 HEVGDFAILLRAGFTKWDATKAQLY 29 (149)
Q Consensus 5 ~elgd~~~Ll~~G~s~~~al~~~~l 29 (149)
-++||+.+-..+..||.+.+...+.
T Consensus 62 aGlGDli~Tc~s~~sRN~~~G~~l~ 86 (160)
T d1n1ea1 62 AGLGDLQLTCSSELSRNFTVGKKLG 86 (160)
T ss_dssp TTHHHHHHHTTCTTSHHHHHHHHHH
T ss_pred ccchhheeeeecchhHHHHHHHHHh
Confidence 4789988888888899887666553
No 8
>d2np5a2 a.121.1.1 (A:78-195) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=3.60 E-value=2.8e+02 Score=16.20 Aligned_cols=20 Identities=20% Similarity=0.003 Sum_probs=16.0
Q ss_pred HHHHhhhhchhHHHHHHHhh
Q psy14284 114 LMANSIDNFTHGLAVGGSFL 133 (149)
Q Consensus 114 ~~~~~~Hnf~~Glaig~~f~ 133 (149)
..+..++.+.||+++-+.+.
T Consensus 71 ~~A~~L~aliDGL~~~~l~~ 90 (118)
T d2np5a2 71 TRAALLLATVDGLALDAIGS 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHhcC
Confidence 45778899999999887754
No 9
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.54 E-value=6.1e+02 Score=16.74 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=27.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHhhhhhHhhhccC
Q psy14284 11 AILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSG 46 (149)
Q Consensus 11 ~~Ll~~G~s~~~al~~~~l~al~t~lGal~g~~~~~ 46 (149)
+..+....+.++++.+...--++.++|+.+.+....
T Consensus 84 a~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~ 119 (249)
T d1j4na_ 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119 (249)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccchhheeeeeeHHHHHHHHHHhhheeecc
Confidence 445666788889988888888888888877666543
No 10
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=3.37 E-value=3.3e+02 Score=13.33 Aligned_cols=18 Identities=22% Similarity=0.759 Sum_probs=0.0
Q ss_pred hHHH-HHHHHHHHHHHHHH
Q psy14284 58 CGLW-VLAGLLVFIVAEKA 75 (149)
Q Consensus 58 ~~l~-~~~G~~l~~~l~~l 75 (149)
+..| |++|.+.|.--|+.
T Consensus 11 y~Fw~FFagLi~YL~rE~~ 29 (37)
T d1eysh2 11 WAFWLFFFGLIIYLRREDK 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccc
Done!