RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14284
(149 letters)
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of
zinc transport proteins and many putative metal
transporters. The main contribution to this family is
from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although
this protein in not found within this family.
Length = 314
Score = 48.9 bits (117), Expect = 1e-07
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAI 42
HE+P +G AILL+AGF++ A L + +G I
Sbjct: 205 HELPEGLGLGAILLQAGFSRKKAVLLALLFALTTPLGIAIGI 246
Score = 39.3 bits (92), Expect = 3e-04
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 38/126 (30%)
Query: 58 CGLWVLAGLLVFIVAEKAFN----------------------VERSEEGEEKADKTNGGS 95
GL VL G + ++ EK V E G +++ +
Sbjct: 80 AGLIVLLGFFLVLLVEKLLTYYKGRGHSHGHDHGHDGEHSHTVPDEESGAVESNVVHHEH 139
Query: 96 DVNANKVPHPVQMSG--------------YLNLMANSIDNFTHGLAVGGSFLISLRVGLL 141
+ H G +L + + +F GLA+G SF S G+
Sbjct: 140 GEGPHHHHHEGHEKGESDKESGLRVRDIAWLLELGIILHSFFEGLAIGVSFSSST--GIS 197
Query: 142 TTFAIL 147
AIL
Sbjct: 198 LFIAIL 203
>gnl|CDD|223505 COG0428, COG0428, Predicted divalent heavy-metal cations
transporter [Inorganic ion transport and metabolism].
Length = 266
Score = 40.8 bits (96), Expect = 7e-05
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 39 LTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVER---SEEGEEKADKTNGGS 95
AI SGV + + L G+L + ++ E S EG E K N
Sbjct: 61 PPAIEASGVLGDSTHEFLPALAGFLLGVLFIFLLDRLVPHEHEGKSVEGLEGLRKPNL-- 118
Query: 96 DVNANKVPHPVQMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTTFAI 146
G+L +A S+ NF GLA+G +FL + +G+ AI
Sbjct: 119 ------------RRGFLLALAISLHNFPEGLAIGVAFLSNPSLGIALALAI 157
Score = 35.0 bits (81), Expect = 0.007
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 1 HEIPHEVGDFAILLRAGFTKWDATKAQLYTSCAGLVGALTAISCSGVTDEVDGPCMTCGL 60
H IP + L AG ++ KA L +GL L A+ + + + L
Sbjct: 160 HNIPEGLAVALPLAGAGRSRL---KALLVAVLSGLAEPLGAVIGAYLLGISSPLVLPFAL 216
Query: 61 WVLAGLLVFIV 71
AG +V++V
Sbjct: 217 AFAAGAMVYVV 227
>gnl|CDD|232917 TIGR00320, dfx_rbo, desulfoferrodoxin. The short N-terminal domain
contains four conserved Cys for binding of a ferric iron
atom, and is homologous to the small protein
desulforedoxin; this domain may also be responsible for
dimerization. The remainder of the molecule binds a
ferrous iron atom and is similar to neelaredoxin, a
monomeric blue non-heme iron protein. The homolog from
Treponema pallidum scores between the trusted cutoff for
orthology and the noise cutoff. Although essentially a
full length homolog, it lacks three of the four Cys
residues in the N-terminal domain; the domain may have
lost ferric binding ability but may have some conserved
structural role such as dimerization, or some new
function. This protein is described in some articles as
rubredoxin oxidoreductase (rbo), and its gene shares an
operon with the rubredoxin gene in Desulfovibrio
vulgaris Hildenborough [Energy metabolism, Electron
transport].
Length = 125
Score = 26.4 bits (58), Expect = 3.8
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 55 CMTCG--LWVL---AGLLVFIVAE-KAFNVERSEEGEEK----ADKTNGGSDVNANKVPH 104
C CG + VL G LV K + ++ +EK +KT G V V H
Sbjct: 10 CEVCGNIVEVLNAGIGQLVCCNQPMKLMSENTTDAAKEKHVPVIEKTGNGYKVKVGSVAH 69
Query: 105 PVQMSGYL 112
P++ Y+
Sbjct: 70 PMEEKHYI 77
>gnl|CDD|227417 COG5085, COG5085, Predicted membrane protein [Function unknown].
Length = 230
Score = 26.8 bits (59), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 95 SDVNANKVPHPVQMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGL 140
S VN +VP V + GYL L N+I + + F++ VGL
Sbjct: 71 SVVNIARVP--VVLIGYLQLFLNAIV-----IGIILYFVVKFIVGL 109
>gnl|CDD|204385 pfam10039, DUF2275, Predicted integral membrane protein (DUF2275).
This domain, found in various hypothetical bacterial
proteins and in the RNA polymerase sigma factor, has no
known function.
Length = 209
Score = 26.0 bits (57), Expect = 7.0
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 61 WVLAGLLVFIVAEKAFNVERSEEGEEKADKTNGGSDVN--ANKVPHPVQMSGYLNLMAN 117
LAGL+VFI A F +++E + DV P+Q Y + N
Sbjct: 37 LALAGLIVFIAASVGFPPLKNKEAKLLNLARLSKMDVPRVTPDAMLPIQAEFYRPKIKN 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,358,969
Number of extensions: 632328
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 15
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)