RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14284
         (149 letters)



>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
           monooxygenase, NADP, oxidoreductase, protein-inhibitor
           complex; HET: HEM CM6; 1.50A {Mycobacterium
           tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
           2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
           1e9x_A* 1u13_A*
          Length = 455

 Score = 28.4 bits (64), Expect = 1.0
 Identities = 6/44 (13%), Positives = 12/44 (27%)

Query: 104 HPVQMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTTFAIL 147
              QM G+   + + +          G   +      LT +   
Sbjct: 106 RGEQMKGHAATIEDQVRRMIADWGEAGEIDLLDFFAELTIYTSS 149


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 27.7 bits (61), Expect = 1.2
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 17/46 (36%)

Query: 44 CSG-----VTDEVDGP--CMTCGLWVLAGLLVFIVAEKAFNVERSE 82
          C       V    +G   C  CGL         ++++K  +  RSE
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGL---------VLSDKLVD-TRSE 62


>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
           alternative splicing, cholesterol biosynthesis,
           endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
           2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
          Length = 461

 Score = 26.9 bits (60), Expect = 3.4
 Identities = 3/46 (6%), Positives = 12/46 (26%), Gaps = 1/46 (2%)

Query: 104 HPVQMSGYLNLMANSIDNFTHGLAVGGSFLISLRVGLLTTFAILSK 149
           +      +++++      +       G   +   +  L      S 
Sbjct: 116 NIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSEL-IILTASH 160


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 4.3
 Identities = 29/166 (17%), Positives = 44/166 (26%), Gaps = 50/166 (30%)

Query: 3   IPHEVGDFAILLRAGFTKW-------------DATKAQLYTSCAGLVGALTAISCSGVTD 49
           +P      A  L+  F K                T A+L     G V +L   S  G  D
Sbjct: 22  VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81

Query: 50  EVDGPCMTCGLWVLAGLLVFIVAEKAFNVERSEEGEEKADKTNGGSDVNANKVPHPVQMS 109
           +V          +   L  F   E  +                 G+D++A       +  
Sbjct: 82  QV----------LNLCLTEF---ENCY---------------LEGNDIHALAAKLLQEND 113

Query: 110 GYLNLMANSIDNFTHGLAVGG--------SFLI-SLRVGLLTTFAI 146
             L      I N+     +          S L  ++  G     AI
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159


>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
           ATPase, parallel dimer; 2.80A {Thermus thermophilus}
          Length = 997

 Score = 26.3 bits (58), Expect = 5.2
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 12/65 (18%)

Query: 26  AQLYTSCAGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVERSEEGE 85
             LY   A +   L     +      +                + V EK  +V  + +G 
Sbjct: 233 TDLYYKMAEIAKKLERGLPAEPGVRKEPTGD------------YTVEEKNRSVHLTLQGI 280

Query: 86  EKADK 90
            KA+K
Sbjct: 281 AKAEK 285


>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
           antifolate complex, methyltransfe multifunctional
           enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
           3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
           3kjs_A*
          Length = 521

 Score = 25.5 bits (56), Expect = 7.7
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 6/98 (6%)

Query: 26  AQLYTSC--AGLVGALTAISCSGVTDEVDGPCMTCGLWVLAGLLVFIVAEKAFNVERSEE 83
             +Y        V  L AI     T  +     +C ++          A        +  
Sbjct: 157 GSVYAEALRPPCVHLLQAIY---RT-TIRASESSCSVFFRVPESGTEAAAGIEWQRETIS 212

Query: 84  GEEKADKTNGGSDVNANKVPHPVQMSGYLNLMANSIDN 121
            E  +   N         +P   +   YL+L+   I  
Sbjct: 213 EELTSANGNETKYYFEKLIPRNREEEQYLSLVDRIIRE 250


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,188,682
Number of extensions: 119278
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 8
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)