Query psy14285
Match_columns 443
No_of_seqs 182 out of 227
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 15:58:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0241|consensus 100.0 1E-112 3E-117 910.0 21.5 385 1-443 653-1200(1714)
2 KOG0241|consensus 100.0 2.8E-40 6.2E-45 355.8 8.5 189 71-338 949-1137(1714)
3 PF12473 DUF3694: Kinesin prot 99.8 1.7E-19 3.8E-24 159.0 9.0 55 165-226 1-56 (140)
4 KOG0245|consensus 99.7 3.9E-18 8.4E-23 187.4 -3.1 187 20-228 847-1071(1221)
5 PF12473 DUF3694: Kinesin prot 97.6 3.1E-05 6.6E-10 68.9 2.7 45 94-150 1-45 (140)
6 PF12130 DUF3585: Protein of u 96.3 0.0059 1.3E-07 55.3 4.9 50 250-299 73-124 (142)
7 PF12130 DUF3585: Protein of u 91.3 0.72 1.6E-05 42.0 6.9 98 240-345 10-123 (142)
8 KOG1924|consensus 52.7 1.4E+02 0.003 35.3 11.2 47 22-71 275-321 (1102)
9 PF14362 DUF4407: Domain of un 43.0 43 0.00092 33.1 5.0 67 236-312 117-183 (301)
10 PRK00846 hypothetical protein; 40.3 67 0.0015 27.2 5.0 17 302-318 60-76 (77)
11 PF15369 KIAA1328: Uncharacter 37.6 35 0.00075 35.8 3.5 47 254-300 8-54 (328)
12 cd04790 HTH_Cfa-like_unk Helix 37.5 89 0.0019 29.1 5.9 67 243-332 77-143 (172)
13 PHA02047 phage lambda Rz1-like 31.8 82 0.0018 28.1 4.4 37 241-278 36-72 (101)
14 KOG0289|consensus 29.0 93 0.002 34.2 5.1 61 209-272 44-110 (506)
15 TIGR01795 CM_mono_cladeE monof 28.9 2.2E+02 0.0047 24.4 6.4 43 252-295 23-65 (94)
16 TIGR01791 CM_archaeal chorisma 28.1 2.4E+02 0.0051 23.0 6.3 41 252-293 19-59 (83)
17 PRK04406 hypothetical protein; 27.2 1.7E+02 0.0037 24.3 5.4 14 304-317 60-73 (75)
18 cd04011 C2B_Ferlin C2 domain s 26.5 78 0.0017 26.2 3.3 31 34-64 2-32 (111)
19 PF04102 SlyX: SlyX; InterPro 24.7 1.6E+02 0.0035 23.7 4.7 34 235-269 14-47 (69)
20 PRK02119 hypothetical protein; 24.5 2.1E+02 0.0046 23.6 5.4 9 309-317 63-71 (73)
21 PRK02793 phi X174 lysis protei 24.4 2.1E+02 0.0046 23.5 5.4 11 307-317 60-70 (72)
22 PF13058 DUF3920: Protein of u 23.8 47 0.001 30.5 1.6 19 413-431 54-72 (126)
23 PF08077 Cm_res_leader: Chlora 23.6 35 0.00076 21.5 0.5 8 304-311 2-9 (17)
24 COG5028 Vesicle coat complex C 23.4 69 0.0015 37.3 3.1 77 17-100 493-571 (861)
25 PF02942 Flu_B_NS1: Influenza 22.7 33 0.00072 33.4 0.5 21 311-331 119-139 (247)
26 smart00830 CM_2 Chorismate mut 22.3 2.7E+02 0.0058 21.8 5.5 42 252-294 15-56 (79)
27 PF06102 DUF947: Domain of unk 22.2 1.3E+02 0.0028 28.4 4.2 65 231-298 55-120 (168)
28 TIGR01795 CM_mono_cladeE monof 21.0 2.4E+02 0.0053 24.1 5.3 23 319-341 42-64 (94)
29 PF01817 CM_2: Chorismate muta 20.7 4.4E+02 0.0095 21.0 6.5 35 259-293 21-55 (81)
30 KOG2189|consensus 20.7 4E+02 0.0088 31.4 8.3 43 220-265 32-74 (829)
31 PRK13729 conjugal transfer pil 20.6 3.1E+02 0.0068 30.3 7.2 27 248-274 77-103 (475)
No 1
>KOG0241|consensus
Probab=100.00 E-value=1.5e-112 Score=909.97 Aligned_cols=385 Identities=54% Similarity=0.824 Sum_probs=327.8
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCcceEEEEEEecCCCCCccccccceE-----EEeee-------------
Q psy14285 1 MFRRSLGQLKEDIVRANAFVQEANFLAEEMGRQTKFSVTLQIPPANLSPNRRWNCVI-----QVDIC------------- 62 (443)
Q Consensus 1 ~~~~sl~~l~~~i~~an~l~rea~~l~eem~k~tef~vtLqIp~anl~~n~k~~~f~-----q~~~~------------- 62 (443)
||++||+|||+||++||+||||||||||||.|.|+|+||||||+|||.||||++.|+ |+-=-
T Consensus 653 mf~~SL~rLr~~iv~AN~LVrEAN~laeEm~KkT~y~VTLQIPaanL~~nrkrGa~vsEPaI~VrR~g~gsQiWt~ekLe 732 (1714)
T KOG0241|consen 653 MFRQSLARLREQIVKANTLVREANFLAEEMSKKTDYQVTLQIPAANLSANRKRGAFVSEPAIQVRRKGKGSQIWTIEKLE 732 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeEEEEcchhcCCcccccCceeccceeEEEecCCCceeeeHHHhH
Confidence 799999999999999999999999999999999999999999999999999999984 43210
Q ss_pred cccc--------------------cCCCCc--------------------------------------------------
Q psy14285 63 NALF--------------------TIPSCT-------------------------------------------------- 72 (443)
Q Consensus 63 ~~~~--------------------~~~~~~-------------------------------------------------- 72 (443)
|+|. ...-+-
T Consensus 733 nkLiDMRd~Yqe~ke~~~~~~~~~~k~~DPFyesQEnhnLiGVANvFLE~LF~DvkL~Y~vPIIsQqGEVAGRLhVev~R 812 (1714)
T KOG0241|consen 733 NKLIDMRDLYQEWKEKVPPAKRLYGKRGDPFYESQENHNLIGVANVFLEVLFHDVKLQYAVPIISQQGEVAGRLHVEVMR 812 (1714)
T ss_pred hHHhhHHHHHHHHHhcCCchhhhccccCCccccccccccchhhHHHHHHHHHhhheeccccceecccccccceeEEEEEE
Confidence 1110 000000
Q ss_pred -------------------hhh--hhhhhhhhhhhhhhccCC-----------Cee------------------------
Q psy14285 73 -------------------WSE--LTRKIELWVDILELNDAG-----------DYT------------------------ 96 (443)
Q Consensus 73 -------------------wSe--~~r~i~~~vqilEln~~G-----------~Y~------------------------ 96 (443)
.-. ...+|.-+|.|.+ ..| .|.
T Consensus 813 v~gq~~~~~~ggdev~e~~~~~~~~~~~ltCrVkIk~--AtGLP~~LSnFVFCqYtFw~~~E~~vvaP~vd~ss~~~~~~ 890 (1714)
T KOG0241|consen 813 VTGQVPERVVGGDEVVESSGEIIHRVKKLTCRVKIKE--ATGLPLNLSNFVFCQYTFWDQQESTVVAPVVDPSSQSKDAQ 890 (1714)
T ss_pred eccccchhhccccccccCCCccccccceEEEEEEEee--ccCCcccccceEEEEeeecccccceeeeeccccccccCCCC
Confidence 000 0123334444442 122 121
Q ss_pred -----------eEEEeecCCcccccceeEEeeeecccccccCCCC-------CcccccccccCCCCCCcceeeeeeEEEE
Q psy14285 97 -----------PVEVTPSRAPDMLTQIIILNVTLCYVNKTVGGHP-------RVERCRGLHAGRSHSLPRARHADGVDIL 158 (443)
Q Consensus 97 -----------pVEVtqsf~~~i~tqpIv~ev~~~GvfQl~QG~q-------rr~~vRVsPVSnSG~~~~~k~dlwveI~ 158 (443)
.|-||..|.+|+...-+-+| ||+|+---. ..++.+.....++=.=.++|+++|+||+
T Consensus 891 ~~v~FeH~~df~V~vtEeFlE~~~dgALaIE-----VwGHr~~g~~~~iwe~d~~qaKtrsL~dRW~EvtRriE~Wvei~ 965 (1714)
T KOG0241|consen 891 YTVIFEHCKDFVVNVTEEFLEHISDGALAIE-----VWGHRIAGNGSSIWEVDSLQAKTRSLHDRWNEVTRRIEMWVEIL 965 (1714)
T ss_pred eEEEeecccceEEeehHHHHHHhhcCceEEE-----EeeccccCCCcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888878 555542111 0111111122222222348999999999
Q ss_pred eecCCCCcceeEeecCCCCCCCCCceEeeecceeeEEEEEEeeeecCCCccceecceeeEEeceeeec-cCCCCCccchh
Q psy14285 159 ELNDAGDYTPVEVTPSRAPDMLTGGTYQLRQGQQRRIQVLVRPVTNSGTLPIICESVGSIAVGSVCLR-SRLQKPLDSYQ 237 (443)
Q Consensus 159 ELn~~GeY~PVeV~~~~~~d~~tgGiFqLhQG~QRRI~Vtv~~vh~SG~Lpliw~~V~sv~VG~Vrlr-~k~~~~Ldsyq 237 (443)
|||+||||.||||.+. +|++||||||||||||||++|+|+||++||+|||+++.|.+|+||||.+| .+.++.+||||
T Consensus 966 ElNenGey~~VEv~~a--~dV~TGGI~QLrQGq~RRv~V~Vk~vq~sGtLPl~~e~I~sVsIG~v~~r~tr~~r~~dsyq 1043 (1714)
T KOG0241|consen 966 ELNENGEYAPVEVHQA--KDVNTGGIFQLRQGQSRRVQVTVKPVQHSGTLPLMVECILSVSIGCVTARSTRLQRGLDSYQ 1043 (1714)
T ss_pred HhccCCCcceeEEeec--ccccccceeEeccCceeEEEEEEeeccCCCccceehhhhheeeeeeEEeeeccCcCccchhh
Confidence 9999999999999998 99999999999999999999999999999999999999999999999998 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhccccccCCCCCCCCCCCCCCCCC
Q psy14285 238 EEDLAVLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNAVLVPAPGSGIPGAPADWNPPS 317 (443)
Q Consensus 238 e~dl~~Lr~kw~~aL~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERnAV~~P~pgSgiPGApa~w~Pp~ 317 (443)
|+||++||+||++||.+|++|||+||||+.+|++|+|+|.|
T Consensus 1044 eeDL~~lR~kWs~AL~kR~~YLdqQiq~l~~K~~KtE~d~e--------------------------------------- 1084 (1714)
T KOG0241|consen 1044 EEDLNCLREKWSDALIKRREYLDQQIQKLSNKTEKTEDDVE--------------------------------------- 1084 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH---------------------------------------
Confidence 99999999999999999999999999999999999999999
Q ss_pred CCcchhHHHhHHHHHHHhhhhhcccceeccCCCCCCCCCCCCCCCCCCCcccccEEEeecCCccCccCCCCCCCCCCcCc
Q psy14285 318 DKSEQDIEREQSLVEQWVNLTEERNAVLVPAPGSGIPGAPADWNPPSGMEPHIPVLFLDLNADDLSASNSGPELDYPVAG 397 (443)
Q Consensus 318 ~~~~~~~~re~~l~~q~~~lteErnav~vP~~~sgipgapa~w~p~~gme~hiPvlfldln~dd~~~~~~~~~~~~~~~g 397 (443)
||++|++|||+|||||||||||+||||||||||+|.||||||+||||||||||+||||+++..++ +.+||
T Consensus 1085 --------RE~~L~~qwv~LTEERnAV~vPapgSgIPGAPadW~pp~GmE~HiPVlFLdLN~DD~s~q~t~de--p~~aG 1154 (1714)
T KOG0241|consen 1085 --------REAQLVEQWVGLTEERNAVLVPAPGSGIPGAPADWIPPPGMETHIPVLFLDLNADDLSAQETLDE--PHAAG 1154 (1714)
T ss_pred --------HHHHHHHHHhhhhhhcceeeccCCCCCCCCCCccccCCCCCcccCceEEEecCCCccccccccCC--ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccccCccccCCceeeccccccccceeeEEEeeccccccccccCCCC
Q psy14285 398 LHSILPKEHGTKFYNLPLVRHLNQEVGAVATWDSSVHDSQHLNKIT 443 (443)
Q Consensus 398 ~~s~l~~e~~~~~~~l~i~~~~~~e~~a~~swdss~hd~~~ln~~t 443 (443)
||||||+||+++||+|||+||+|+||+|+|||||||||||+|||+|
T Consensus 1155 ~~s~L~~E~~~~f~~l~I~k~~D~ev~a~aSWDSsvHd~~aLnr~T 1200 (1714)
T KOG0241|consen 1155 VNSILPKEHGSQFFYLPIIKHSDKEVSATASWDSSVHDSPALNRVT 1200 (1714)
T ss_pred ccccccCCcCCceEEEEeEeccCCceeEEeeccccccCchhhcCCC
Confidence 9999999999999999999999999999999999999999999997
No 2
>KOG0241|consensus
Probab=100.00 E-value=2.8e-40 Score=355.80 Aligned_cols=189 Identities=39% Similarity=0.588 Sum_probs=157.2
Q ss_pred CchhhhhhhhhhhhhhhhhccCCCeeeEEEeecCCcccccceeEEeeeecccccccCCCCCcccccccccCCCCCCccee
Q psy14285 71 CTWSELTRKIELWVDILELNDAGDYTPVEVTPSRAPDMLTQIIILNVTLCYVNKTVGGHPRVERCRGLHAGRSHSLPRAR 150 (443)
Q Consensus 71 ~~wSe~~r~i~~~vqilEln~~G~Y~pVEVtqsf~~~i~tqpIv~ev~~~GvfQl~QG~qrr~~vRVsPVSnSG~~~~~k 150 (443)
++|+|++|+|++||+|+|||++|+|+||||++... |..+|.|||+|||+||.++.++|++++|++|...
T Consensus 949 dRW~EvtRriE~Wvei~ElNenGey~~VEv~~a~d-----------V~TGGI~QLrQGq~RRv~V~Vk~vq~sGtLPl~~ 1017 (1714)
T KOG0241|consen 949 DRWNEVTRRIEMWVEILELNENGEYAPVEVHQAKD-----------VNTGGIFQLRQGQSRRVQVTVKPVQHSGTLPLMV 1017 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcceeEEeeccc-----------ccccceeEeccCceeEEEEEEeeccCCCccceeh
Confidence 57999999999999999999999999999999755 6669999999999999999999999999999765
Q ss_pred eeeeEEEEeecCCCCcceeEeecCCCCCCCCCceEeeecceeeEEEEEEeeeecCCCccceecceeeEEeceeeeccCCC
Q psy14285 151 HADGVDILELNDAGDYTPVEVTPSRAPDMLTGGTYQLRQGQQRRIQVLVRPVTNSGTLPIICESVGSIAVGSVCLRSRLQ 230 (443)
Q Consensus 151 ~dlwveI~ELn~~GeY~PVeV~~~~~~d~~tgGiFqLhQG~QRRI~Vtv~~vh~SG~Lpliw~~V~sv~VG~Vrlr~k~~ 230 (443)
..++..+|- +|++++ ..++- -+.+..+
T Consensus 1018 --------------------------e~I~sVsIG----------~v~~r~----tr~~r-------------~~dsyqe 1044 (1714)
T KOG0241|consen 1018 --------------------------ECILSVSIG----------CVTARS----TRLQR-------------GLDSYQE 1044 (1714)
T ss_pred --------------------------hhhheeeee----------eEEeee----ccCcC-------------ccchhhH
Confidence 233333333 445532 12220 1125568
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhccccccCCCCCCCCCC
Q psy14285 231 KPLDSYQEEDLAVLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNAVLVPAPGSGIPGAP 310 (443)
Q Consensus 231 ~~Ldsyqe~dl~~Lr~kw~~aL~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERnAV~~P~pgSgiPGAp 310 (443)
++|+..+++|+.+| .|++.||+++++.|-. |..+.+++-|++.. |++|||+||||||||+||+|||||||||
T Consensus 1045 eDL~~lR~kWs~AL-~kR~~YLdqQiq~l~~---K~~KtE~d~eRE~~----L~~qwv~LTEERnAV~vPapgSgIPGAP 1116 (1714)
T KOG0241|consen 1045 EDLNCLREKWSDAL-IKRREYLDQQIQKLSN---KTEKTEDDVEREAQ----LVEQWVGLTEERNAVLVPAPGSGIPGAP 1116 (1714)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh---ccccchHHHHHHHH----HHHHHhhhhhhcceeeccCCCCCCCCCC
Confidence 89999999999999 7889999999888855 55555677899998 9999999999999999999999999999
Q ss_pred CCCCCCCCCcchhHHHhHHHHHHHhhhh
Q psy14285 311 ADWNPPSDKSEQDIEREQSLVEQWVNLT 338 (443)
Q Consensus 311 a~w~Pp~~~~~~~~~re~~l~~q~~~lt 338 (443)
|+|.||||. |++-.++ +++|.
T Consensus 1117 adW~pp~Gm-----E~HiPVl--FLdLN 1137 (1714)
T KOG0241|consen 1117 ADWIPPPGM-----ETHIPVL--FLDLN 1137 (1714)
T ss_pred ccccCCCCC-----cccCceE--EEecC
Confidence 999999996 7888877 77553
No 3
>PF12473 DUF3694: Kinesin protein ; InterPro: IPR022164 This domain family is found in eukaryotes, and is typically between 131 and 151 amino acids in length. The family is found in association with PF00225 from PFAM, PF00498 from PFAM. There is a single completely conserved residue W that may be functionally important.
Probab=99.80 E-value=1.7e-19 Score=158.97 Aligned_cols=55 Identities=51% Similarity=0.745 Sum_probs=51.9
Q ss_pred CcceeEeecCCCCCCCCCceEeeecceeeEEEEEEeeeecCC-CccceecceeeEEeceeeec
Q psy14285 165 DYTPVEVTPSRAPDMLTGGTYQLRQGQQRRIQVLVRPVTNSG-TLPIICESVGSIAVGSVCLR 226 (443)
Q Consensus 165 eY~PVeV~~~~~~d~~tgGiFqLhQG~QRRI~Vtv~~vh~SG-~Lpliw~~V~sv~VG~Vrlr 226 (443)
||+||+|++. ++ +|+|+|+||||+||||+|+| .|++| .|+ |+++.++.||++|+.
T Consensus 1 eY~pV~v~~~--~~-~~~g~F~LrqG~qRrI~v~l--~~~sg~~l~--~e~~~~v~vg~vR~~ 56 (140)
T PF12473_consen 1 EYVPVPVDHD--ND-LDGGIFQLRQGLQRRIQVTL--KHESGSQLP--WERCFGVLVGRVRLV 56 (140)
T ss_pred CceeeEEecC--CC-ccCCcEeeeCCEeeeEEEEE--EEeCCCCcc--eeeEeeeeecceEec
Confidence 7999999998 66 99999999999999999999 68999 888 999999999999987
No 4
>KOG0245|consensus
Probab=99.66 E-value=3.9e-18 Score=187.39 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=150.7
Q ss_pred HHHhhhHHHHhcCcceEEEEEEecCCCCCccccccceEEEeeecccccCCCCchhhhhhhhhhhhhhhhhccCC-----C
Q psy14285 20 VQEANFLAEEMGRQTKFSVTLQIPPANLSPNRRWNCVIQVDICNALFTIPSCTWSELTRKIELWVDILELNDAG-----D 94 (443)
Q Consensus 20 ~rea~~l~eem~k~tef~vtLqIp~anl~~n~k~~~f~q~~~~~~~~~~~~~~wSe~~r~i~~~vqilEln~~G-----~ 94 (443)
..+...+.++|+.+..|+|++...+|++++-+|.++||||+|+++ +++++|..+ + .|.-+ +
T Consensus 847 ~~~vs~~~~~~~~~~~~~~~~s~~~a~~~~~~~~~~~~~~~fl~~----~~~~~s~~~---------l-~~~g~~~~~~~ 912 (1221)
T KOG0245|consen 847 AEEVSAILEDLQSGLSFTFRVSVIEAVDIAMEDLDSNCQERFLHR----KDEALSGTP---------L-QNSGRGGPGVR 912 (1221)
T ss_pred hhhccccccccccCCCcccchhhhhhccchhhhhhcccchhhccc----cccccccCc---------c-ccCCCCCCccc
Confidence 344456679999999999999999999999999999999999999 999999999 4 33321 5
Q ss_pred ee----eEEEeecCCcccccceeEEeeeeccccc--ccCCCCCcccccccc-cCCCCC----------------------
Q psy14285 95 YT----PVEVTPSRAPDMLTQIIILNVTLCYVNK--TVGGHPRVERCRGLH-AGRSHS---------------------- 145 (443)
Q Consensus 95 Y~----pVEVtqsf~~~i~tqpIv~ev~~~GvfQ--l~QG~qrr~~vRVsP-VSnSG~---------------------- 145 (443)
|+ .++++++++.|+++.|++|| .+|+|| .+|...........+ .+...+
T Consensus 913 ~h~~~~~~~~~~~~~~~~~s~~~~~e--q~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~ 990 (1221)
T KOG0245|consen 913 YHVTNFAVKIDKSEVFYFKSNPQHFE--QFGHYQSGQQPSPLSPQELVSPTRCSRERRPPSMPRSKPVRATSLAKLSANR 990 (1221)
T ss_pred ccccccccccccchhhhhccCcceee--eccccccccccCCccchhcccccccchhccCCCccccccccchHHHhhhhhc
Confidence 55 78999999999999999999 568888 555444322222221 111111
Q ss_pred --Ccceeeee--eEEEEeecCCCCcceeEeecCCCCCCCCCceEeeecceeeEEEEEEeeeecCCCccceecceeeEEec
Q psy14285 146 --LPRARHAD--GVDILELNDAGDYTPVEVTPSRAPDMLTGGTYQLRQGQQRRIQVLVRPVTNSGTLPIICESVGSIAVG 221 (443)
Q Consensus 146 --~~~~k~dl--wveI~ELn~~GeY~PVeV~~~~~~d~~tgGiFqLhQG~QRRI~Vtv~~vh~SG~Lpliw~~V~sv~VG 221 (443)
.....+++ ||||+|+.++|+|.+--|.+. .+.++.|+|.||||.||||.+++ .|+.|.|. |.+|++..||
T Consensus 991 ~~~~k~l~~~L~~fe~~e~~~~~~~~~~~~~~~--~~~~~~~~~~l~q~~q~~~~~~~--~~E~~~~~--~~~vre~v~~ 1064 (1221)
T KOG0245|consen 991 NGSVKSLETLLQWFEICEHEATPQYIQKAVDQA--IQLPRQGVKLLHQGAQRRISVTI--LHEGGELK--WKDVRELVMG 1064 (1221)
T ss_pred cchhhcchhhHHHhhhhhhhccchhhhHHHhhc--cccccccccchhhhheeehhhhh--hccccchh--HHHHHHHHhh
Confidence 11123444 999999999999999999998 99999999999999999999999 79966988 9999999999
Q ss_pred eeeeccC
Q psy14285 222 SVCLRSR 228 (443)
Q Consensus 222 ~Vrlr~k 228 (443)
+||..+.
T Consensus 1065 ~i~~~~~ 1071 (1221)
T KOG0245|consen 1065 RIRNGPE 1071 (1221)
T ss_pred hhhcCcc
Confidence 9887654
No 5
>PF12473 DUF3694: Kinesin protein ; InterPro: IPR022164 This domain family is found in eukaryotes, and is typically between 131 and 151 amino acids in length. The family is found in association with PF00225 from PFAM, PF00498 from PFAM. There is a single completely conserved residue W that may be functionally important.
Probab=97.64 E-value=3.1e-05 Score=68.90 Aligned_cols=45 Identities=18% Similarity=0.047 Sum_probs=39.4
Q ss_pred CeeeEEEeecCCcccccceeEEeeeecccccccCCCCCcccccccccCCCCCCccee
Q psy14285 94 DYTPVEVTPSRAPDMLTQIIILNVTLCYVNKTVGGHPRVERCRGLHAGRSHSLPRAR 150 (443)
Q Consensus 94 ~Y~pVEVtqsf~~~i~tqpIv~ev~~~GvfQl~QG~qrr~~vRVsPVSnSG~~~~~k 150 (443)
+|.||+|.++.. ++.|+||+|||+|||+.+.+.+.+++++.=+++
T Consensus 1 eY~pV~v~~~~~------------~~~g~F~LrqG~qRrI~v~l~~~sg~~l~~e~~ 45 (140)
T PF12473_consen 1 EYVPVPVDHDND------------LDGGIFQLRQGLQRRIQVTLKHESGSQLPWERC 45 (140)
T ss_pred CceeeEEecCCC------------ccCCcEeeeCCEeeeEEEEEEEeCCCCcceeeE
Confidence 699999999865 568999999999999999999999999873333
No 6
>PF12130 DUF3585: Protein of unknown function (DUF3585); InterPro: IPR022735 This domain is found in eukaryotes. It is typically between 135 and 149 amino acids in length and is found associated with PF00307 from PFAM.
Probab=96.31 E-value=0.0059 Score=55.30 Aligned_cols=50 Identities=34% Similarity=0.581 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccC--CchHHHHHhhHHHHHHHHhhHhhccccc
Q psy14285 250 DALVRRRQYLDQQIQRLINKQD--KSEQDIEREQSLEEQWVNLTEERNAVLV 299 (443)
Q Consensus 250 ~aL~~r~~~Ld~qi~k~~~k~d--k~e~d~ere~sL~~qWv~LteERnAV~~ 299 (443)
..|++|+..|+.+|..+.+++| ||+.|+.||+.|+.++|.+.+.||+++-
T Consensus 73 ~~Le~~~~~L~~ELr~l~~~~d~~KT~~d~~rE~~Ll~elv~lV~~Rd~LV~ 124 (142)
T PF12130_consen 73 QELEDRQARLEQELRELLAKPDWEKTEEDKQREEELLQELVELVNKRDALVQ 124 (142)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccChhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4577888899999999999987 9999999999999999999999999764
No 7
>PF12130 DUF3585: Protein of unknown function (DUF3585); InterPro: IPR022735 This domain is found in eukaryotes. It is typically between 135 and 149 amino acids in length and is found associated with PF00307 from PFAM.
Probab=91.30 E-value=0.72 Score=41.96 Aligned_cols=98 Identities=26% Similarity=0.383 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhccccccCCCCCCCCC----------
Q psy14285 240 DLAVLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNAVLVPAPGSGIPGA---------- 309 (443)
Q Consensus 240 dl~~Lr~kw~~aL~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERnAV~~P~pgSgiPGA---------- 309 (443)
.|..+ +.-...|+.|=..|..+|..... ..+.|..|+.+|..|..+||+++-=...=.+=--
T Consensus 10 el~~i-e~~~~~lE~~g~~lE~~LR~~~~-------~~~~e~~Ll~ewf~Lv~eKn~LvrreseL~~~~~~~~Le~~~~~ 81 (142)
T PF12130_consen 10 ELEEI-EEEQRELEERGVELEKQLRSAEE-------NDEEEEELLQEWFKLVNEKNALVRRESELMYMEKEQELEDRQAR 81 (142)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhcc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444 55566666666666666655443 2224567999999999999997532211000000
Q ss_pred -----CC-CCCCCCCCcchhHHHhHHHHHHHhhhhhccccee
Q psy14285 310 -----PA-DWNPPSDKSEQDIEREQSLVEQWVNLTEERNAVL 345 (443)
Q Consensus 310 -----pa-~w~Pp~~~~~~~~~re~~l~~q~~~lteErnav~ 345 (443)
-. .=.|-..||+.|-.||..|+...|.+.+.||+++
T Consensus 82 L~~ELr~l~~~~d~~KT~~d~~rE~~Ll~elv~lV~~Rd~LV 123 (142)
T PF12130_consen 82 LEQELRELLAKPDWEKTEEDKQREEELLQELVELVNKRDALV 123 (142)
T ss_pred HHHHHHHHHhccccccChhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 00 0012346889999999999999999999999864
No 8
>KOG1924|consensus
Probab=52.74 E-value=1.4e+02 Score=35.34 Aligned_cols=47 Identities=23% Similarity=0.136 Sum_probs=27.2
Q ss_pred HhhhHHHHhcCcceEEEEEEecCCCCCccccccceEEEeeecccccCCCC
Q psy14285 22 EANFLAEEMGRQTKFSVTLQIPPANLSPNRRWNCVIQVDICNALFTIPSC 71 (443)
Q Consensus 22 ea~~l~eem~k~tef~vtLqIp~anl~~n~k~~~f~q~~~~~~~~~~~~~ 71 (443)
+|-+.+.+++....|.=-+.=..++.....|+.|-. |+|+|-|-+++
T Consensus 275 ~aiT~~ae~~~veRF~piv~gl~~~e~~~l~vacmq---~INal~t~p~d 321 (1102)
T KOG1924|consen 275 EAITTIAEAKPVERFRPIVEGLDFLEKQQLQVACMQ---FINALVTSPSD 321 (1102)
T ss_pred HHHHHHHhhcchhhhhhHHHHHhccchHHHHHHHHH---HHHHhcCCHHH
Confidence 444445555666666655544444445555555544 78887776655
No 9
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=43.02 E-value=43 Score=33.09 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhccccccCCCCCCCCCCCC
Q psy14285 236 YQEEDLAVLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNAVLVPAPGSGIPGAPAD 312 (443)
Q Consensus 236 yqe~dl~~Lr~kw~~aL~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERnAV~~P~pgSgiPGApa~ 312 (443)
-+.+..+....++...+..+++.++.++.++...-+..+ .++-.+..+.+.=..+..|||.||.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~----------~~~~~~~~~~~~E~~g~~~tg~~G~Gp~ 183 (301)
T PF14362_consen 117 IRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLE----------KEIDRAQQEAQCEIFGTGGTGVPGKGPR 183 (301)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhcCCCCCCCCCCCcH
Confidence 344455555566766666677777666665544433322 2233344444444555599999998743
No 10
>PRK00846 hypothetical protein; Provisional
Probab=40.32 E-value=67 Score=27.17 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy14285 302 PGSGIPGAPADWNPPSD 318 (443)
Q Consensus 302 pgSgiPGApa~w~Pp~~ 318 (443)
..++.+++|++-.|||-
T Consensus 60 ~~~s~~~~~~dE~PPPH 76 (77)
T PRK00846 60 VRSTLFADPADEPPPPH 76 (77)
T ss_pred hccccCCCCCCCCCcCC
Confidence 34566678888888883
No 11
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=37.55 E-value=35 Score=35.78 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhcccccc
Q psy14285 254 RRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNAVLVP 300 (443)
Q Consensus 254 ~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERnAV~~P 300 (443)
+|+..|-++|-+.....++++.+-.-|++.++.-....|++|++++-
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~ 54 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIK 54 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56788999999888888889999999999999999999999999874
No 12
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=37.53 E-value=89 Score=29.09 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhccccccCCCCCCCCCCCCCCCCCCCcch
Q psy14285 243 VLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNAVLVPAPGSGIPGAPADWNPPSDKSEQ 322 (443)
Q Consensus 243 ~Lr~kw~~aL~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERnAV~~P~pgSgiPGApa~w~Pp~~~~~~ 322 (443)
.+.++..+.|+++++.|+++.+.+...-+..+.......--.++|+.+++. .|.+++
T Consensus 77 ~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~~~~~~~~~V~~~~w~~l~~~-----------------------~g~~~~ 133 (172)
T cd04790 77 DVLRRRLAELNREIQRLRQQQRAIATLLKQPTLLKEQRLVTKEKWVAILKA-----------------------AGMDEA 133 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHHHHHH-----------------------cCCChH
Confidence 333555666666666666655544433211111111111124688888864 457888
Q ss_pred hHHHhHHHHH
Q psy14285 323 DIEREQSLVE 332 (443)
Q Consensus 323 ~~~re~~l~~ 332 (443)
+|.+-+..++
T Consensus 134 ~m~~wh~~fe 143 (172)
T cd04790 134 DMRRWHIEFE 143 (172)
T ss_pred HHHHHHHHHH
Confidence 8877666655
No 13
>PHA02047 phage lambda Rz1-like protein
Probab=31.83 E-value=82 Score=28.14 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q psy14285 241 LAVLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIE 278 (443)
Q Consensus 241 l~~Lr~kw~~aL~~r~~~Ld~qi~k~~~k~dk~e~d~e 278 (443)
.+.| ..-+++++.|+..++++++++..|.++.++|+.
T Consensus 36 a~~l-a~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~ 72 (101)
T PHA02047 36 AKRQ-TARLEALEVRYATLQRHVQAVEARTNTQRQEVD 72 (101)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 566899999999999999999999888888887
No 14
>KOG0289|consensus
Probab=29.01 E-value=93 Score=34.21 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=41.7
Q ss_pred cceecceeeEEeceeeeccCCC--CC----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy14285 209 PIICESVGSIAVGSVCLRSRLQ--KP----LDSYQEEDLAVLREKWSDALVRRRQYLDQQIQRLINKQDK 272 (443)
Q Consensus 209 pliw~~V~sv~VG~Vrlr~k~~--~~----Ldsyqe~dl~~Lr~kw~~aL~~r~~~Ld~qi~k~~~k~dk 272 (443)
||.-+++.+|.+|.+ ++++.- -+ |.++|+||=+.+.+.. .|.++++.+.++|.-..-..|-
T Consensus 44 pLs~eelV~Ik~~~~-v~pk~~satSIPalL~~lQdEWDavML~~F--~LRqqL~ttrQELShaLYqhDA 110 (506)
T KOG0289|consen 44 PLSIEELVEIKVPAQ-VRPKPPSATSIPALLKTLQDEWDAVMLESF--TLRQQLQTTRQELSHALYQHDA 110 (506)
T ss_pred cCCHHHeeecccccc-ccCCCCCccchHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhH
Confidence 566889999999986 554422 22 4789999988887764 3566666777776655555554
No 15
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=28.94 E-value=2.2e+02 Score=24.40 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhc
Q psy14285 252 LVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERN 295 (443)
Q Consensus 252 L~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERn 295 (443)
|.+|..+. .++-++-.+.+..-.|-+||..+++.|..+.++.+
T Consensus 23 L~~R~~~~-~~ia~~K~~~~~~v~dp~Re~~vl~~~~~~a~~~g 65 (94)
T TIGR01795 23 LAERFKCT-SQVGVLKANAGLAPADPAREDYQIARLRRLAIDAG 65 (94)
T ss_pred HHHHHHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33444333 33444444455566789999999999999998763
No 16
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=28.08 E-value=2.4e+02 Score=22.96 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHh
Q psy14285 252 LVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEE 293 (443)
Q Consensus 252 L~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteE 293 (443)
|.+|.. +-.+|-+.-.+++..-.|.+||..+++.|..+.++
T Consensus 19 l~~R~~-l~~~i~~~K~~~g~~i~d~~RE~~v~~~~~~~~~~ 59 (83)
T TIGR01791 19 IEKRIK-IARKIGEIKHNNGLPITDEEREERVIERLRNTARN 59 (83)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHh
Confidence 333433 33445444444555666999999999999988875
No 17
>PRK04406 hypothetical protein; Provisional
Probab=27.24 E-value=1.7e+02 Score=24.31 Aligned_cols=14 Identities=36% Similarity=0.530 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCCC
Q psy14285 304 SGIPGAPADWNPPS 317 (443)
Q Consensus 304 SgiPGApa~w~Pp~ 317 (443)
+|..+.|++=.|||
T Consensus 60 ~~~~~~~~~e~pPP 73 (75)
T PRK04406 60 SSNLADPAEETPPP 73 (75)
T ss_pred cccCCCCCCCCCcc
Confidence 34445566666776
No 18
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=26.47 E-value=78 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=27.9
Q ss_pred ceEEEEEEecCCCCCccccccceEEEeeecc
Q psy14285 34 TKFSVTLQIPPANLSPNRRWNCVIQVDICNA 64 (443)
Q Consensus 34 tef~vtLqIp~anl~~n~k~~~f~q~~~~~~ 64 (443)
-+|+++++|-.|...++...|-||.+.+++.
T Consensus 2 ~~~~l~V~v~~a~~L~~~~~dpyv~v~~~~~ 32 (111)
T cd04011 2 QDFQVRVRVIEARQLVGGNIDPVVKVEVGGQ 32 (111)
T ss_pred CcEEEEEEEEEcccCCCCCCCCEEEEEECCE
Confidence 4799999999998888899999999999876
No 19
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.68 E-value=1.6e+02 Score=23.73 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14285 235 SYQEEDLAVLREKWSDALVRRRQYLDQQIQRLINK 269 (443)
Q Consensus 235 syqe~dl~~Lr~kw~~aL~~r~~~Ld~qi~k~~~k 269 (443)
.|||..++.| ++=.-...++++.|..+++.+..|
T Consensus 14 a~qe~~ie~L-n~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 14 AFQEDTIEEL-NDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555 332333334444555555544444
No 20
>PRK02119 hypothetical protein; Provisional
Probab=24.49 E-value=2.1e+02 Score=23.59 Aligned_cols=9 Identities=33% Similarity=0.660 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q psy14285 309 APADWNPPS 317 (443)
Q Consensus 309 Apa~w~Pp~ 317 (443)
.|++=.|||
T Consensus 63 ~~~~e~~PP 71 (73)
T PRK02119 63 SQAEETPPP 71 (73)
T ss_pred CCCCCCCcC
Confidence 344444555
No 21
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.43 E-value=2.1e+02 Score=23.46 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=5.1
Q ss_pred CCCCCCCCCCC
Q psy14285 307 PGAPADWNPPS 317 (443)
Q Consensus 307 PGApa~w~Pp~ 317 (443)
++.|++=.|||
T Consensus 60 ~~~~~~e~~PP 70 (72)
T PRK02793 60 IASQAEETPPP 70 (72)
T ss_pred CCCCCCCCCcC
Confidence 33344434665
No 22
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=23.76 E-value=47 Score=30.45 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=11.8
Q ss_pred ccccccccceeeEEEeecc
Q psy14285 413 LPLVRHLNQEVGAVATWDS 431 (443)
Q Consensus 413 l~i~~~~~~e~~a~~swds 431 (443)
+--+-|-++.+.-+|-|+-
T Consensus 54 ~~g~y~kek~~iFv~~we~ 72 (126)
T PF13058_consen 54 AGGFYHKEKQLIFVCMWEE 72 (126)
T ss_pred cchhhhccccEEEEEehHH
Confidence 3334456677777777763
No 23
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=23.59 E-value=35 Score=21.51 Aligned_cols=8 Identities=75% Similarity=1.190 Sum_probs=6.6
Q ss_pred CCCCCCCC
Q psy14285 304 SGIPGAPA 311 (443)
Q Consensus 304 SgiPGApa 311 (443)
||+|||-|
T Consensus 2 sgvpgala 9 (17)
T PF08077_consen 2 SGVPGALA 9 (17)
T ss_pred CCCCceEE
Confidence 89999865
No 24
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=23.38 E-value=69 Score=37.26 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=57.4
Q ss_pred HHHHHHhhhHHHHhcCcceEEEEEEecCCCCCccccccceEEEeeecccccCCCCchhhhhhhhhhhhhhhhhcc--CCC
Q psy14285 17 NAFVQEANFLAEEMGRQTKFSVTLQIPPANLSPNRRWNCVIQVDICNALFTIPSCTWSELTRKIELWVDILELND--AGD 94 (443)
Q Consensus 17 n~l~rea~~l~eem~k~tef~vtLqIp~anl~~n~k~~~f~q~~~~~~~~~~~~~~wSe~~r~i~~~vqilEln~--~G~ 94 (443)
|--.+=+++++.|+...+.|.+.+.+-.++.. |.+.-|| ||+|| +-+.|+||+.+||-.+-|.+- +.+ ++.
T Consensus 493 ~d~~kl~~dL~~~ls~~~gy~~~~rvR~S~gl--r~s~fyG--nf~~r--s~dl~~F~tm~rd~Sl~~~~s-id~~l~~~ 565 (861)
T COG5028 493 NDATKLANDLVSHLSMEIGYEAVMRVRCSTGL--RVSSFYG--NFFNR--SSDLCAFSTMPRDTSLLVEFS-IDEKLMTS 565 (861)
T ss_pred hhHHHHHHHHHHhhhhhhhhheeeEeeccCce--ehhhhhc--ccccc--CcccccccccCCCceEEEEEE-ecccccCC
Confidence 34455678889999999999999999887765 5666676 77888 779999999999988777665 322 235
Q ss_pred eeeEEE
Q psy14285 95 YTPVEV 100 (443)
Q Consensus 95 Y~pVEV 100 (443)
|+.+.|
T Consensus 566 ~v~fQv 571 (861)
T COG5028 566 DVYFQV 571 (861)
T ss_pred ceEEEE
Confidence 554444
No 25
>PF02942 Flu_B_NS1: Influenza B non-structural protein (NS1); InterPro: IPR004208 A specific region of the Influenza B virus NS1 protein, which includes part of its effector domain, blocks the covalent linkage of mouse ISG15 to its target proteins both in vitro and in infected cells. Of the several hundred proteins induced by interferon (IFN) alpha/beta, the ubiquitin-like ISG15 protein is one of the most predominant. Influenza A virus employs a different strategy: its NS1 protein does not bind the ISG15 protein, but little or no ISG15 protein is produced during infection [].; PDB: 3RT3_C 3R66_A 3SDL_A 1XEQ_A.
Probab=22.72 E-value=33 Score=33.42 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCCCCCCCCcchhHHHhHHHH
Q psy14285 311 ADWNPPSDKSEQDIEREQSLV 331 (443)
Q Consensus 311 a~w~Pp~~~~~~~~~re~~l~ 331 (443)
+++-|-||++-.|+|.|-.-+
T Consensus 119 ~~~pptpg~~ldd~eeepenv 139 (247)
T PF02942_consen 119 TNHPPTPGNYLDDIEEEPENV 139 (247)
T ss_dssp ---------------------
T ss_pred ccCCCCccccccchhcCcccC
Confidence 344588999999998765443
No 26
>smart00830 CM_2 Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.
Probab=22.34 E-value=2.7e+02 Score=21.83 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhh
Q psy14285 252 LVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEER 294 (443)
Q Consensus 252 L~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteER 294 (443)
|.+|..+ -.++-+.-.++...=.|.+||..+++.|.....+.
T Consensus 15 l~~R~~l-~~~i~~~K~~~~~~i~d~~Re~~vl~~~~~~a~~~ 56 (79)
T smart00830 15 LAERAAL-AREVARLKAKNGLPIYDPEREAEVLERLRALAEGP 56 (79)
T ss_pred HHHHHHH-HHHHHHHHHHCCCCCCChHHHHHHHHHHHHHcccC
Confidence 4444433 33344433334455568899999999999887643
No 27
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=22.17 E-value=1.3e+02 Score=28.38 Aligned_cols=65 Identities=25% Similarity=0.426 Sum_probs=46.9
Q ss_pred CCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhcccc
Q psy14285 231 KPLDSYQEEDLAVLREKWSDAL-VRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNAVL 298 (443)
Q Consensus 231 ~~Ldsyqe~dl~~Lr~kw~~aL-~~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERnAV~ 298 (443)
.-|+.|++..++.|++.....= ...++.|..+|+++.+. ..+....+++..++.+|.. +||.+|-
T Consensus 55 ~FL~d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q-~~~~~~~~~~~e~~~~~kk--~E~e~v~ 120 (168)
T PF06102_consen 55 GFLDDYREKEIKELKKQLKKTKDPEEREELKRELQRMESQ-LKARKRKDREREVKKEHKK--EEREKVK 120 (168)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3578899999999987755442 35668888888876555 4456677888999999975 5666654
No 28
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=20.95 E-value=2.4e+02 Score=24.10 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.5
Q ss_pred CcchhHHHhHHHHHHHhhhhhcc
Q psy14285 319 KSEQDIEREQSLVEQWVNLTEER 341 (443)
Q Consensus 319 ~~~~~~~re~~l~~q~~~lteEr 341 (443)
.+-.|-+||.++++.|..++++.
T Consensus 42 ~~v~dp~Re~~vl~~~~~~a~~~ 64 (94)
T TIGR01795 42 LAPADPAREDYQIARLRRLAIDA 64 (94)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC
Confidence 33456689999999999998874
No 29
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=20.68 E-value=4.4e+02 Score=20.99 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=24.5
Q ss_pred HHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHh
Q psy14285 259 LDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEE 293 (443)
Q Consensus 259 Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteE 293 (443)
+-.+|-++-.+....-.|.+||..+++.|..+.++
T Consensus 21 l~~~i~~~K~~~~~~i~d~~RE~~v~~~~~~~~~~ 55 (81)
T PF01817_consen 21 LVRKIAEYKKENGLPIFDPDREEEVLERLRELAEE 55 (81)
T ss_dssp HHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhHh
Confidence 33444444444455556899999999999998874
No 30
>KOG2189|consensus
Probab=20.65 E-value=4e+02 Score=31.36 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=34.6
Q ss_pred eceeeeccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14285 220 VGSVCLRSRLQKPLDSYQEEDLAVLREKWSDALVRRRQYLDQQIQR 265 (443)
Q Consensus 220 VG~Vrlr~k~~~~Ldsyqe~dl~~Lr~kw~~aL~~r~~~Ld~qi~k 265 (443)
.|.|..|+= ...+.+||-.=...+ ++.+-|++++.||.+||.|
T Consensus 32 lGlvqFrDL-N~~v~afQR~fv~ev--rRcdemeRklrfl~~ei~k 74 (829)
T KOG2189|consen 32 LGLVQFRDL-NPDVSAFQRKFVNEV--RRCDEMERKLRFLESEIKK 74 (829)
T ss_pred cCeeEeeeC-CCccCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 677888863 446788998877777 4679999999999998876
No 31
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.63 E-value=3.1e+02 Score=30.29 Aligned_cols=27 Identities=4% Similarity=0.187 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCch
Q psy14285 248 WSDALVRRRQYLDQQIQRLINKQDKSE 274 (443)
Q Consensus 248 w~~aL~~r~~~Ld~qi~k~~~k~dk~e 274 (443)
-.+.|+++++.|.++++.+..+..+.+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle 103 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 456667777777666653334433333
Done!