Query psy14285
Match_columns 443
No_of_seqs 182 out of 227
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 15:58:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kw6_A Cyclin-dependent kinase 27.0 52 0.0018 26.2 3.4 26 3-28 35-60 (65)
2 2lw1_A ABC transporter ATP-bin 20.9 2.5E+02 0.0087 22.2 6.5 57 235-295 17-87 (89)
3 2m1l_A Cyclin-dependent kinase 20.9 75 0.0026 25.6 3.2 27 3-29 39-65 (69)
4 3efg_A Protein SLYX homolog; x 19.9 1.4E+02 0.0049 23.8 4.8 10 308-317 67-76 (78)
5 2pnv_A Small conductance calci 18.0 83 0.0028 23.0 2.7 21 246-266 22-42 (43)
6 3lay_A Zinc resistance-associa 17.7 2.8E+02 0.0095 25.2 6.7 47 232-278 67-116 (175)
7 1zme_C Proline utilization tra 14.7 1.4E+02 0.0047 21.8 3.3 21 247-267 44-64 (70)
8 1aq5_A Matrilin-1, CMP, cartil 14.2 2.3E+02 0.0079 21.2 4.3 31 232-263 13-46 (47)
9 1gmj_A ATPase inhibitor; coile 13.3 2.5E+02 0.0085 23.2 4.7 24 234-257 35-58 (84)
10 1wft_A 1700129L13RIK protein; 13.1 41 0.0014 29.6 -0.0 23 302-324 3-38 (123)
No 1
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=27.03 E-value=52 Score=26.19 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHH
Q psy14285 3 RRSLGQLKEDIVRANAFVQEANFLAE 28 (443)
Q Consensus 3 ~~sl~~l~~~i~~an~l~rea~~l~e 28 (443)
|.+..|||.+|+.|..||||.-..+|
T Consensus 35 k~~~ERLkR~I~hAr~LVrECl~E~e 60 (65)
T 2kw6_A 35 KSAMERLKRGIIHARGLVRECLAETE 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999866554
No 2
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.88 E-value=2.5e+02 Score=22.23 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=32.8
Q ss_pred chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cC------------CchHHHHHhhHHHHHHHHhhHhhc
Q psy14285 235 SYQE-EDLAVLREKWSDALVRRRQYLDQQIQRLINK-QD------------KSEQDIEREQSLEEQWVNLTEERN 295 (443)
Q Consensus 235 syqe-~dl~~Lr~kw~~aL~~r~~~Ld~qi~k~~~k-~d------------k~e~d~ere~sL~~qWv~LteERn 295 (443)
||.+ +.|+.| ++-...|+.++..|+.++..-.-. +| ..+.+.+ .+++.|..|-+-+|
T Consensus 17 SykeqrEle~l-e~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe---~~~erWeeLe~~~~ 87 (89)
T 2lw1_A 17 SYKLQRELEQL-PQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE---QAFERWEYLEALKN 87 (89)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHc
Confidence 5655 456666 666777777777777766542211 11 1111222 57788988876554
No 3
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=20.86 E-value=75 Score=25.56 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14285 3 RRSLGQLKEDIVRANAFVQEANFLAEE 29 (443)
Q Consensus 3 ~~sl~~l~~~i~~an~l~rea~~l~ee 29 (443)
+....|||.+|..|..||||.-..+|+
T Consensus 39 ks~~ERLkRgI~hAr~LVRECl~e~er 65 (69)
T 2m1l_A 39 KSAMERLKRGIIHARALVRECLAETER 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999998766554
No 4
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=19.93 E-value=1.4e+02 Score=23.79 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q psy14285 308 GAPADWNPPS 317 (443)
Q Consensus 308 GApa~w~Pp~ 317 (443)
+.|++-.|||
T Consensus 67 ~~~~~e~~PP 76 (78)
T 3efg_A 67 ADAADEPPPP 76 (78)
T ss_dssp ----------
T ss_pred CCCCCCCCcc
Confidence 4566767776
No 5
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=17.98 E-value=83 Score=23.02 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14285 246 EKWSDALVRRRQYLDQQIQRL 266 (443)
Q Consensus 246 ~kw~~aL~~r~~~Ld~qi~k~ 266 (443)
+|+..+|+.+.+.|.+.++.+
T Consensus 22 E~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 22 EKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 556666666666666665543
No 6
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=17.66 E-value=2.8e+02 Score=25.18 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=31.1
Q ss_pred CccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccCCchHHHH
Q psy14285 232 PLDSYQEEDLAVLREKWSDALV---RRRQYLDQQIQRLINKQDKSEQDIE 278 (443)
Q Consensus 232 ~Ldsyqe~dl~~Lr~kw~~aL~---~r~~~Ld~qi~k~~~k~dk~e~d~e 278 (443)
.|..=|.+.+..||+++..... +++..+..+++.+..++.-.+..++
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~ 116 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKIN 116 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4667788888899888876554 4446667788888776544333333
No 7
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=14.74 E-value=1.4e+02 Score=21.77 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy14285 247 KWSDALVRRRQYLDQQIQRLI 267 (443)
Q Consensus 247 kw~~aL~~r~~~Ld~qi~k~~ 267 (443)
+|.+.|++|+..|.++|..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666543
No 8
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=14.15 E-value=2.3e+02 Score=21.20 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=20.5
Q ss_pred CccchhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14285 232 PLDSYQE---EDLAVLREKWSDALVRRRQYLDQQI 263 (443)
Q Consensus 232 ~Ldsyqe---~dl~~Lr~kw~~aL~~r~~~Ld~qi 263 (443)
+|-.||. .-|.+| .+.++++.+|++.|+++|
T Consensus 13 slv~FQ~~v~~~l~~L-t~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 13 SIVKFQTKVEELINTL-QQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 3444554 455666 344888999999888764
No 9
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=13.29 E-value=2.5e+02 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=16.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q psy14285 234 DSYQEEDLAVLREKWSDALVRRRQ 257 (443)
Q Consensus 234 dsyqe~dl~~Lr~kw~~aL~~r~~ 257 (443)
..-+.++|.+||++-.+-|+.+++
T Consensus 35 rqkekEqL~~LKkkl~~el~~h~~ 58 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENEISHHAK 58 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667888888886666655553
No 10
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=13.07 E-value=41 Score=29.63 Aligned_cols=23 Identities=43% Similarity=0.923 Sum_probs=17.0
Q ss_pred CCCCCCCCCC-------------CCCCCCCCcchhH
Q psy14285 302 PGSGIPGAPA-------------DWNPPSDKSEQDI 324 (443)
Q Consensus 302 pgSgiPGApa-------------~w~Pp~~~~~~~~ 324 (443)
-+.|.||||. .|.||...+-..+
T Consensus 3 ~~pgfPgAPs~ikIsK~~dgahLsWePP~~~sG~I~ 38 (123)
T 1wft_A 3 SGSSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNIL 38 (123)
T ss_dssp CSSSCCCCCEEEEEEECSSEEEEEEECCSSCCSSCC
T ss_pred CCCCCCCCCcceEEeeCCCceEEeecCCCCCCcccE
Confidence 4679999996 4888888765443
Done!