Query psy14285
Match_columns 443
No_of_seqs 182 out of 227
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 15:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14285.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14285hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ecma_ a.130.1.1 (A:) Chorism 18.0 1.4E+02 0.01 21.5 6.2 41 254-294 22-62 (91)
2 d2e50a1 d.305.1.1 (A:1-222) Pr 16.8 45 0.0033 28.8 3.5 23 281-308 58-80 (222)
3 d2gtvx1 a.130.1.3 (X:1-93) Cho 15.1 34 0.0025 25.6 2.0 41 255-295 33-73 (93)
4 d1r4xa1 b.1.10.3 (A:600-762) C 13.8 2.5E+02 0.018 23.3 7.5 37 32-77 43-79 (163)
5 d2azea1 e.63.1.1 (A:199-346) T 13.1 59 0.0043 27.3 3.1 24 240-263 6-29 (148)
6 d1dqva1 b.7.1.2 (A:295-424) Sy 13.0 1.7E+02 0.012 21.7 5.7 28 37-64 19-50 (130)
7 d2c4fu1 b.1.2.1 (U:91-210) Ext 11.5 65 0.0047 24.8 2.7 31 27-57 82-115 (116)
8 d1up9a_ a.138.1.1 (A:) Cytochr 10.4 35 0.0026 26.2 0.7 19 354-374 2-20 (107)
9 d2tnfa_ b.22.1.1 (A:) Tumor ne 10.1 2E+02 0.015 22.5 5.5 17 114-130 106-122 (148)
10 d1ugka_ b.7.1.2 (A:) Synaptota 9.6 3.4E+02 0.025 20.1 8.6 75 37-124 23-103 (138)
No 1
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=18.01 E-value=1.4e+02 Score=21.52 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhh
Q psy14285 254 RRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEER 294 (443)
Q Consensus 254 ~r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteER 294 (443)
.+|-.|-.+|-+.-.+....-.|.+||..+++.|....++.
T Consensus 22 ~~R~~l~~~I~~~K~~~~~~i~d~~RE~~il~~~~~~~~~~ 62 (91)
T d1ecma_ 22 AERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAH 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHhhcC
Confidence 33444555565554445555668999999999999887654
No 2
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.82 E-value=45 Score=28.79 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhHhhccccccCCCCCCCC
Q psy14285 281 QSLEEQWVNLTEERNAVLVPAPGSGIPG 308 (443)
Q Consensus 281 ~sL~~qWv~LteERnAV~~P~pgSgiPG 308 (443)
+....+..-|-++|++++ .||||
T Consensus 58 ~k~~~~~~ply~~R~~iI-----~gIP~ 80 (222)
T d2e50a1 58 QKYNKLRQPFFQKRSELI-----AKIPN 80 (222)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTSTT
T ss_pred HHHHHHhhhHHHHHHHHh-----ccCcc
Confidence 555667788999999998 57876
No 3
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]}
Probab=15.15 E-value=34 Score=25.63 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcccCCchHHHHHhhHHHHHHHHhhHhhc
Q psy14285 255 RRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERN 295 (443)
Q Consensus 255 r~~~Ld~qi~k~~~k~dk~e~d~ere~sL~~qWv~LteERn 295 (443)
+|-.+-++|-+.-.+.+..=.|.+||..+++.+....++.+
T Consensus 33 ~R~~l~~~I~~~K~~~~~pi~d~~RE~~vl~~~~~~a~~~~ 73 (93)
T d2gtvx1 33 ERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHN 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhCC
Confidence 33444555555555555556688999999999999877654
No 4
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.85 E-value=2.5e+02 Score=23.32 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=24.2
Q ss_pred CcceEEEEEEecCCCCCccccccceEEEeeecccccCCCCchhhhh
Q psy14285 32 RQTKFSVTLQIPPANLSPNRRWNCVIQVDICNALFTIPSCTWSELT 77 (443)
Q Consensus 32 k~tef~vtLqIp~anl~~n~k~~~f~q~~~~~~~~~~~~~~wSe~~ 77 (443)
..|||.|++.=--. +.+|..|||+-|- +.+-..+.+.
T Consensus 43 ~EtEYvV~~vKHiF------~~HiVLQF~v~NT---L~dq~LenVs 79 (163)
T d1r4xa1 43 SETEYVIRCTKHTF------TNHMVFQFDCTNT---LNDQTLENVT 79 (163)
T ss_dssp TTSSEEEEEEEEEC------SSEEEEEEEEEEC---CTTEEEEEEE
T ss_pred cccEEEEEEEEEec------cCcEEEEEEeeec---cCceEeeeEE
Confidence 34788888763322 4589999999997 3444444443
No 5
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.09 E-value=59 Score=27.31 Aligned_cols=24 Identities=21% Similarity=0.399 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14285 240 DLAVLREKWSDALVRRRQYLDQQI 263 (443)
Q Consensus 240 dl~~Lr~kw~~aL~~r~~~Ld~qi 263 (443)
.|++=|+++.+.+.+..++|++.+
T Consensus 6 ~Le~E~~~~~erI~~K~~~LqeLi 29 (148)
T d2azea1 6 NLEVERQRRLERIKQKQSQLQELI 29 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455565666666666666543
No 6
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.96 E-value=1.7e+02 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=19.6
Q ss_pred EEEEEecCCCCCcc----ccccceEEEeeecc
Q psy14285 37 SVTLQIPPANLSPN----RRWNCVIQVDICNA 64 (443)
Q Consensus 37 ~vtLqIp~anl~~n----~k~~~f~q~~~~~~ 64 (443)
.+++.|-.|...+. .++|.||++.++..
T Consensus 19 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~ 50 (130)
T d1dqva1 19 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPD 50 (130)
T ss_dssp EEEEEEEEEECCCCCSTTSCCCEEEEEECTTS
T ss_pred EEEEEEEeeeCCccccCCCCcceEEEEEEccC
Confidence 56777777755543 36789999988653
No 7
>d2c4fu1 b.1.2.1 (U:91-210) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.48 E-value=65 Score=24.83 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHHhcCcceEEEEEE--ecCCCC-CccccccceE
Q psy14285 27 AEEMGRQTKFSVTLQ--IPPANL-SPNRRWNCVI 57 (443)
Q Consensus 27 ~eem~k~tef~vtLq--Ip~anl-~~n~k~~~f~ 57 (443)
-..|+.+|+|||.+| ||.... ....++...|
T Consensus 82 l~~L~p~t~YCv~Vqa~i~s~~~nk~s~~S~~~C 115 (116)
T d2c4fu1 82 LIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVEC 115 (116)
T ss_dssp EEECCTTCCCEEEEEEECTTCSSSCBCCCCCCEE
T ss_pred EeCCCCCCcEEEEEEEEecccccCCcCCCCcCEe
Confidence 456889999999998 443211 2234566666
No 8
>d1up9a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}
Probab=10.42 E-value=35 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCcccccEEE
Q psy14285 354 PGAPADWNPPSGMEPHIPVLF 374 (443)
Q Consensus 354 pgapa~w~p~~gme~hiPvlf 374 (443)
|++|.+|.++-+... ||.|
T Consensus 2 ~~~p~~~~~~~~~~~--~V~F 20 (107)
T d1up9a_ 2 PAVPDKPVEVKGSQK--TVMF 20 (107)
T ss_dssp CCCCSSCEEEECSSC--EEEE
T ss_pred CCCCccchhhcCCCC--ceee
Confidence 899999999876654 7888
No 9
>d2tnfa_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.13 E-value=2e+02 Score=22.47 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=11.7
Q ss_pred EEeeeecccccccCCCC
Q psy14285 114 ILNVTLCYVNKTVGGHP 130 (443)
Q Consensus 114 v~ev~~~GvfQl~QG~q 130 (443)
.--+..+|+|+|+.|-.
T Consensus 106 ~~t~y~gGvf~L~~gD~ 122 (148)
T d2tnfa_ 106 YEPIYLGGVFQLEKGDQ 122 (148)
T ss_dssp EEEEEEEEEEEECTTCE
T ss_pred eEEEeEeeEEEecCCCE
Confidence 34456788888887743
No 10
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=3.4e+02 Score=20.13 Aligned_cols=75 Identities=8% Similarity=-0.032 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCccc-----cccceEEEeeecccccCCCCchhhhhhhhhhhhhhhhhccCCCe-eeEEEeecCCccccc
Q psy14285 37 SVTLQIPPANLSPNR-----RWNCVIQVDICNALFTIPSCTWSELTRKIELWVDILELNDAGDY-TPVEVTPSRAPDMLT 110 (443)
Q Consensus 37 ~vtLqIp~anl~~n~-----k~~~f~q~~~~~~~~~~~~~~wSe~~r~i~~~vqilEln~~G~Y-~pVEVtqsf~~~i~t 110 (443)
.++++|-.|...+.. .+|.||++.++.. ....+.|-. ..-+.+-.| .......-....+..
T Consensus 23 ~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~----~~~~~kT~v---------~~~t~nP~wne~f~f~~~~~~~l~~ 89 (138)
T d1ugka_ 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE----KKHKVKTRV---------LRKTLDPAFDETFTFYGIPYTQIQE 89 (138)
T ss_dssp EEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT----TCSEEECCC---------CSSCSSCEEEEEEEEECCCSTTGGG
T ss_pred EEEEEEEEecCCCCCCCCCCccceEEEEEEcCC----CCEeEeCee---------EeCCCCCceeeEEEEeeeCHHHccc
Confidence 466777776554432 3689999998754 444443333 211223333 233332222345677
Q ss_pred ceeEEeeeeccccc
Q psy14285 111 QIIILNVTLCYVNK 124 (443)
Q Consensus 111 qpIv~ev~~~GvfQ 124 (443)
..|.|.|++...|.
T Consensus 90 ~~L~~~V~d~d~~~ 103 (138)
T d1ugka_ 90 LALHFTILSFDRFS 103 (138)
T ss_dssp CEEEEEEEEECSSC
T ss_pred ceEEEEEEECCCCC
Confidence 78888877665554
Done!