RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14285
         (443 letters)



>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4
          {Caenorhabditis elegans [TaxId: 6239]}
          Length = 158

 Score = 28.5 bits (63), Expect = 1.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 33 QTKFSVTLQIPPANLSPNRRWNCVIQVDICN 63
          ++  +  + +PP    P + W+CVI VDIC+
Sbjct: 5  RSALAFAVVMPPGVDIPVKLWSCVIPVDICS 35


>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 28.5 bits (63), Expect = 1.7
 Identities = 6/62 (9%), Positives = 19/62 (30%)

Query: 237 QEEDLAVLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNA 296
            + D A ++           + L +  +     + + ++       +        E++ A
Sbjct: 99  DKLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAA 158

Query: 297 VL 298
            L
Sbjct: 159 RL 160



 Score = 26.2 bits (57), Expect = 9.6
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 226 RSRLQKPLDSYQEEDLAVLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEE 285
               Q    +Y  E   +  +          Q  D +I +L  +   +  +  R  SL+ 
Sbjct: 224 DEAWQTRYQAYAAERDRIAAQG------LAPQDRDARIAQLRQQTFTAPGEAIRAASLDR 277

Query: 286 Q 286
            
Sbjct: 278 G 278


>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 371

 Score = 27.6 bits (61), Expect = 3.3
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 238 EEDLAVLREKWSDALVRRR------QYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNL 290
           E++   L +KW+D  +           + +  Q+L     K+ + I+ + +    W +L
Sbjct: 1   EDNFTKLLDKWNDVTIGNYVYDTNDSNMQKLNQKLDETNAKNIEAIKLDSNRTFLWKDL 59


>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein
           {Escherichia coli [TaxId: 562]}
          Length = 91

 Score = 25.9 bits (57), Expect = 3.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)

Query: 251 ALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERN 295
           AL+  R+ L  ++ +      +  +DI+RE+ L E+ + L +  +
Sbjct: 19  ALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHH 63


>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 371

 Score = 27.6 bits (61), Expect = 3.8
 Identities = 5/42 (11%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 238 EEDLAVLREKWSDALVRRRQYL--DQQIQRLINKQDKSEQDI 277
           ++      + W+  +   + Y   + Q+ +L  + +    D 
Sbjct: 2   KDTYTDRLDDWNGIIAGNQYYDSKNDQMAKLNQELEGKVADS 43


>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus
           subtilis [TaxId: 1423]}
          Length = 109

 Score = 26.1 bits (57), Expect = 4.3
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 233 LDSYQEEDLAVLREKWSDALVRRRQYLDQQIQRL 266
           LD    +  A L+    + L++++Q +D+ IQ +
Sbjct: 69  LDHPNFDRKAALQS-QKEILMKKKQRMDEMIQTI 101


>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
           protein 1 (GBP1), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 300

 Score = 27.0 bits (59), Expect = 4.9
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 237 QEEDLAVLREKWSDALVRRRQYLDQQIQRLINKQDKSEQDIEREQSLEEQ 286
            +E L  L EK    +   R  L ++ +R +  + + ++ + +E   +E 
Sbjct: 241 YQEHLKQLTEK----MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKES 286


>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter
           aurescens [TaxId: 43663]}
          Length = 369

 Score = 26.4 bits (58), Expect = 6.6
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 239 EDLAVLREKWSDALVRRRQY------LDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTE 292
            + A LR +W D +  R           + I  L NK   S   ++        + +L+ 
Sbjct: 4   AEFAALRNRWVDQITGRNVIQAGDPDFAKAITALNNKAADSLAKLDAAAGRTSVFTDLSL 63

Query: 293 ERNAVLVPA 301
            ++A +V  
Sbjct: 64  AKDAEMVTT 72


>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 186

 Score = 26.0 bits (57), Expect = 8.2
 Identities = 12/92 (13%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 255 RRQYLDQQIQRLINKQDKSEQDIEREQSLEEQWVNLTEERNAVLVPAPGSGIPGAPADWN 314
           ++Q L+Q +Q +  +    EQ ++  ++L++ +    +                +  D  
Sbjct: 5   KQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLK-------------SQGDMQ 51

Query: 315 PPSDKSEQDIEREQSLVEQWVN-LTEERNAVL 345
             +  ++    ++   +EQ +  L + R +++
Sbjct: 52  DLNGNNQSVTRQKMQQLEQMLTALDQMRRSIV 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,692,676
Number of extensions: 80803
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 17
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)