BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14287
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 72 TVVQVLGSSVRSH-VSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVSAQTLGRY 129
T V V G ++ + V +F+++GGNSL ++ ++ L+ GH +S+ QTL +Y
Sbjct: 49 TFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISM------QTLYQY 101
>pdb|3GD5|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|D Chain D, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|E Chain E, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|F Chain F, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
Length = 323
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 77 LGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVSAQTLGRYTGSLLLS 136
L +S R+ VS +V YQ+GG ++ + T++ G V D +A+ LGRY L+
Sbjct: 56 LKASTRTRVSFTVAMYQLGGQVIDLSPSNTQV---GRGEPVRD--TARVLGRYVDG--LA 108
Query: 137 LQRFWMTDL 145
++ F T+L
Sbjct: 109 IRTFAQTEL 117
>pdb|1O94|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|B Chain B, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|D Chain D, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|F Chain F, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Z Chain Z, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|D Chain D, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
Length = 320
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 210 LERWIIPELKRDCYVELLEQIWEPLVAAR----LSFIVKSREVGEGGKILGACLNFDAL 264
+ R I E + + EL ++ L +R ++ KSR+VG+ GK++G+C + A+
Sbjct: 208 IGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKSRQVGQSGKVVGSCKLYVAM 266
>pdb|3CLT|D Chain D, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
Length = 321
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 232 EPLVAARLSFIVKSREVGEGGKILGACLNFDAL 264
EP+ A ++ KSR+VG+ GK++G+C + A+
Sbjct: 237 EPI--ADAGWLPKSRQVGQSGKVVGSCKLYVAM 267
>pdb|3CLR|D Chain D, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
Length = 321
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 222 CYVELLEQIWEPLVAARLSFIVKSREVGEGGKILGACLNFDAL 264
C + + W P KSR+VG+ GK++G+C + A+
Sbjct: 235 CSAPIADAGWLP----------KSRQVGQSGKVVGSCKLYVAM 267
>pdb|3CLS|D Chain D, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
Length = 321
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 222 CYVELLEQIWEPLVAARLSFIVKSREVGEGGKILGACLNFDAL 264
C + + W P KSR+VG+ GK++G+C + A+
Sbjct: 235 CSCPIADAGWLP----------KSRQVGQSGKVVGSCKLYVAM 267
>pdb|3CLU|D Chain D, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 321
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 237 ARLSFIVKSREVGEGGKILGACLNFDAL 264
A ++ KSR+VG+ GK++G+C + A+
Sbjct: 240 ADAGWLPKSRQVGQSGKVVGSCKLYVAM 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,818,899
Number of Sequences: 62578
Number of extensions: 288004
Number of successful extensions: 758
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 7
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)