Query psy14287
Match_columns 290
No_of_seqs 90 out of 92
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 16:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00550 PP-binding: Phosphopa 99.4 3.7E-13 8E-18 95.5 7.0 66 67-133 1-67 (67)
2 PRK05691 peptide synthase; Val 99.3 3E-12 6.4E-17 148.1 7.2 70 63-135 4240-4310(4334)
3 PRK12316 peptide synthase; Pro 99.3 3.4E-12 7.3E-17 149.6 7.3 69 63-134 3555-3623(5163)
4 PRK12467 peptide synthase; Pro 99.3 4.9E-12 1.1E-16 145.8 7.4 71 62-135 2095-2165(3956)
5 PRK12467 peptide synthase; Pro 99.2 1.3E-11 2.7E-16 142.4 7.3 70 63-135 3604-3674(3956)
6 PRK10252 entF enterobactin syn 99.2 1.5E-11 3.3E-16 126.3 6.9 70 63-135 977-1047(1296)
7 PRK05691 peptide synthase; Val 99.2 1.7E-11 3.7E-16 141.9 7.0 71 62-135 2707-2777(4334)
8 PRK12316 peptide synthase; Pro 99.2 4.3E-11 9.4E-16 140.5 8.0 72 61-135 1015-1086(5163)
9 PRK06060 acyl-CoA synthetase; 99.0 4.5E-10 9.8E-15 110.0 6.5 70 66-135 547-617 (705)
10 TIGR03443 alpha_am_amid L-amin 99.0 7.2E-10 1.6E-14 115.8 8.0 72 63-135 847-919 (1389)
11 KOG1178|consensus 99.0 1.2E-10 2.7E-15 123.6 2.0 185 64-290 598-783 (1032)
12 smart00823 PKS_PP Phosphopante 98.7 5.3E-08 1.2E-12 67.8 7.1 70 66-135 14-84 (86)
13 CHL00124 acpP acyl carrier pro 98.4 1.1E-06 2.4E-11 66.0 6.2 71 64-135 5-77 (82)
14 PRK00982 acpP acyl carrier pro 98.3 2.1E-06 4.6E-11 63.6 6.2 71 64-135 3-75 (78)
15 TIGR00517 acyl_carrier acyl ca 98.0 2E-05 4.2E-10 58.6 6.4 71 64-135 3-75 (77)
16 PRK12449 acyl carrier protein; 97.9 3.4E-05 7.4E-10 57.7 6.8 71 64-135 5-77 (80)
17 PRK05883 acyl carrier protein; 97.9 5E-05 1.1E-09 60.0 7.0 72 63-135 13-86 (91)
18 PRK05350 acyl carrier protein; 97.9 4.7E-05 1E-09 57.9 6.3 71 64-135 6-78 (82)
19 COG0236 AcpP Acyl carrier prot 97.8 6.8E-05 1.5E-09 56.8 6.3 71 64-135 5-77 (80)
20 PRK09184 acyl carrier protein; 97.8 7.6E-05 1.6E-09 59.1 6.7 72 64-135 6-85 (89)
21 PRK07117 acyl carrier protein; 97.8 7.9E-05 1.7E-09 57.8 6.2 70 65-135 6-77 (79)
22 PRK05087 D-alanine--poly(phosp 97.7 0.00014 3E-09 56.2 6.5 72 63-135 1-76 (78)
23 PRK07081 acyl carrier protein; 97.7 0.00012 2.6E-09 56.6 6.1 70 66-135 2-75 (83)
24 PRK07639 acyl carrier protein; 97.4 0.00061 1.3E-08 53.2 7.2 71 65-135 6-80 (86)
25 PRK05828 acyl carrier protein; 97.3 0.00079 1.7E-08 52.9 6.3 67 68-135 9-77 (84)
26 PRK08172 putative acyl carrier 97.2 0.0011 2.3E-08 51.6 6.5 72 63-135 3-76 (82)
27 COG3433 Aryl carrier domain [S 97.2 0.00066 1.4E-08 53.6 5.2 64 71-135 5-68 (74)
28 PTZ00171 acyl carrier protein; 97.0 0.0022 4.7E-08 55.4 6.7 70 65-135 71-142 (148)
29 TIGR01688 dltC D-alanine--poly 95.0 0.032 6.9E-07 43.5 3.7 66 67-133 2-71 (73)
30 PRK06508 acyl carrier protein; 94.6 0.095 2.1E-06 42.1 5.7 70 65-135 4-86 (93)
31 KOG2452|consensus 92.3 0.15 3.2E-06 53.0 4.0 72 62-135 320-393 (881)
32 KOG1748|consensus 90.9 0.31 6.6E-06 42.3 3.9 73 62-135 51-125 (131)
33 PRK00754 signal recognition pa 73.9 7.3 0.00016 31.9 4.9 67 109-202 20-87 (95)
34 PF01922 SRP19: SRP19 protein; 72.3 5.7 0.00012 32.1 3.9 67 110-202 15-89 (95)
35 TIGR02813 omega_3_PfaA polyket 63.6 16 0.00034 44.3 6.5 71 64-135 1307-1381(2582)
36 PRK03745 signal recognition pa 60.6 20 0.00043 29.9 4.9 69 109-203 17-91 (100)
37 PF13527 Acetyltransf_9: Acety 58.0 63 0.0014 24.6 7.1 56 185-259 2-57 (127)
38 PF13420 Acetyltransf_4: Acety 52.0 67 0.0014 25.3 6.5 61 188-259 4-67 (155)
39 KOG1202|consensus 44.8 19 0.00041 42.0 3.1 54 67-120 2007-2061(2376)
40 PRK10162 acetyl esterase; Prov 43.3 38 0.00082 31.3 4.4 73 39-113 104-180 (318)
41 COG0657 Aes Esterase/lipase [L 41.5 64 0.0014 29.2 5.5 87 37-125 100-190 (312)
42 PRK10809 ribosomal-protein-S5- 39.2 1.3E+02 0.0029 25.0 6.7 71 182-259 17-93 (194)
43 PRK09831 putative acyltransfer 38.2 44 0.00096 26.7 3.6 60 185-259 3-69 (147)
44 COG0013 AlaS Alanyl-tRNA synth 34.9 17 0.00037 40.0 0.9 44 54-97 116-167 (879)
45 KOG3235|consensus 33.8 44 0.00096 30.8 3.2 27 237-267 40-69 (193)
46 cd03014 PRX_Atyp2cys Peroxired 32.5 54 0.0012 26.0 3.2 27 239-270 112-138 (143)
47 COG4301 Uncharacterized conser 31.4 69 0.0015 31.6 4.2 59 65-128 61-125 (321)
48 PF08123 DOT1: Histone methyla 31.4 22 0.00047 32.1 0.9 45 84-135 39-87 (205)
49 cd04615 CBS_pair_2 The CBS dom 30.1 86 0.0019 22.9 3.7 52 204-259 54-106 (113)
50 TIGR02382 wecD_rffC TDP-D-fuco 29.8 81 0.0018 26.7 4.0 70 182-259 43-115 (191)
51 TIGR02813 omega_3_PfaA polyket 29.6 89 0.0019 38.3 5.5 71 64-135 1211-1285(2582)
52 PF03456 uDENN: uDENN domain; 27.5 60 0.0013 23.5 2.5 22 237-261 43-64 (65)
53 PF00975 Thioesterase: Thioest 27.0 51 0.0011 27.6 2.3 32 91-122 67-101 (229)
54 PF08348 PAS_6: YheO-like PAS 26.2 64 0.0014 26.8 2.7 23 237-263 83-106 (118)
55 COG3153 Predicted acetyltransf 24.6 2E+02 0.0043 25.8 5.6 59 182-259 3-62 (171)
56 TIGR03827 GNAT_ablB putative b 24.5 2.7E+02 0.0058 25.2 6.6 45 160-204 93-137 (266)
57 cd04600 CBS_pair_HPP_assoc Thi 24.5 97 0.0021 23.0 3.2 47 212-262 73-120 (124)
58 KOG0304|consensus 23.9 1E+02 0.0022 29.5 3.8 35 70-110 203-237 (239)
59 cd04624 CBS_pair_11 The CBS do 22.5 1.5E+02 0.0033 21.5 3.9 64 192-259 41-105 (112)
60 PRK10514 putative acetyltransf 22.3 3.8E+02 0.0082 20.8 6.8 64 184-259 3-66 (145)
61 COG4168 SapB ABC-type antimicr 21.2 38 0.00083 33.2 0.6 30 197-226 255-284 (321)
62 smart00800 uDENN Domain always 21.0 98 0.0021 23.8 2.7 22 237-261 67-88 (89)
63 PF13480 Acetyltransf_6: Acety 20.1 1.9E+02 0.0042 21.9 4.1 41 221-265 52-93 (142)
No 1
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.43 E-value=3.7e-13 Score=95.45 Aligned_cols=66 Identities=21% Similarity=0.454 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHh
Q psy14287 67 KVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSL 133 (290)
Q Consensus 67 ~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L 133 (290)
+.|.++|+++||.+ ...|+++++||++|+|||.+++++++++++ |+.+++.+++.+||++++++.+
T Consensus 1 e~l~~~~~~~l~~~-~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVD-PEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSS-GGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcC-HhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 36889999999964 368999999999999999999999999998 9999999999999999999864
No 2
>PRK05691 peptide synthase; Validated
Probab=99.29 E-value=3e-12 Score=148.06 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 63 LPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 63 l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
=++|+.|.++|++|||.+ +||++||||+||||||+||++++++++. |+.|+++++|++||+++||+.+..
T Consensus 4240 ~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~ 4310 (4334)
T PRK05691 4240 NELEQTLATIWADVLKVE---RVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEG 4310 (4334)
T ss_pred CHHHHHHHHHHHHHhCCC---cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhh
Confidence 478999999999999984 8999999999999999999999999987 999999999999999999999975
No 3
>PRK12316 peptide synthase; Provisional
Probab=99.29 E-value=3.4e-12 Score=149.58 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHcCCCcchhhhccccCHHHHHHHhh
Q psy14287 63 LPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVSAQTLGRYTGSLL 134 (290)
Q Consensus 63 l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~G~~I~VrDff~apTIaELA~~L~ 134 (290)
-++|+.|.++|++|||.+ .||++||||+||||||+||++++++|++|+.++++|+|++|||++||+.+.
T Consensus 3555 ~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGGdSl~a~~l~~~~~~~g~~~~~~~~f~~~ti~~la~~~~ 3623 (5163)
T PRK12316 3555 NELERRLAAIWADVLKLE---QVGLTDNFFELGGDSIISLQVVSRARQAGIRFTPKDLFQHQTIQGLARVAR 3623 (5163)
T ss_pred CHHHHHHHHHHHHHhCCC---CCCCCCCchhcCCccHHHHHHHHHHHHcCCCCCHHHHhcCCCHHHHHHHHh
Confidence 467999999999999984 899999999999999999999999999999999999999999999998654
No 4
>PRK12467 peptide synthase; Provisional
Probab=99.27 E-value=4.9e-12 Score=145.78 Aligned_cols=71 Identities=25% Similarity=0.374 Sum_probs=66.5
Q ss_pred CchhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHcCCCcchhhhccccCHHHHHHHhhh
Q psy14287 62 RLPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 62 ~l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.-++|+.|+++|++|||.+ +||++||||+||||||+|||+++++|+.|+.+++++||++||+++||..+..
T Consensus 2095 ~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGGdSl~a~~l~~~~~~~g~~l~~~~if~~~ti~~la~~~~~ 2165 (3956)
T PRK12467 2095 QSELEQRLAAIWQDVLGLE---QVGLHDNFFELGGDSIISIQVVSRARQAGIRFTPKDLFQHQTVQSLAAVAQE 2165 (3956)
T ss_pred CCHHHHHHHHHHHHHhCCC---ccCCCCChhhcCCchHHHHHHHHHHHHcCCCCCHHHHhcCCCHHHHHHHHhh
Confidence 3468999999999999984 8999999999999999999999999999999999999999999999998754
No 5
>PRK12467 peptide synthase; Provisional
Probab=99.22 E-value=1.3e-11 Score=142.44 Aligned_cols=70 Identities=30% Similarity=0.520 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 63 LPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 63 l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
=++|+.|+++|++|||.+ .||++||||+||||||.||++++++|+. |+.|+++++|++||+++||+.+..
T Consensus 3604 ~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3604 SEVEQQLAAIWADVLGVE---QVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred CHHHHHHHHHHHHHhCCC---CCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 367999999999999985 8999999999999999999999999998 999999999999999999999865
No 6
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.22 E-value=1.5e-11 Score=126.28 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 63 LPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 63 l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
-++|+.|.++|+++||.+ .+++++|||+||||||+||+++++|++. |+.+++.++|.+||+++||+.|..
T Consensus 977 ~~~e~~l~~~~~~~l~~~---~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~ 1047 (1296)
T PRK10252 977 TGTETIIAAAFSSLLGCD---VVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDA 1047 (1296)
T ss_pred CHHHHHHHHHHHHHhCCC---CCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhc
Confidence 467899999999999985 8999999999999999999999999997 999999999999999999999976
No 7
>PRK05691 peptide synthase; Validated
Probab=99.20 E-value=1.7e-11 Score=141.93 Aligned_cols=71 Identities=25% Similarity=0.363 Sum_probs=66.4
Q ss_pred CchhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHcCCCcchhhhccccCHHHHHHHhhh
Q psy14287 62 RLPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 62 ~l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.-++|+.|+.+|++|||.+ +|+++||||+||||||+|||+++++|+.|+.++++|||.+||+++||..+..
T Consensus 2707 ~~~~e~~l~~iw~~vL~~~---~i~~~~~Ff~lGGdSl~a~~l~~~~~~~g~~l~~~~lf~~~ti~~la~~~~~ 2777 (4334)
T PRK05691 2707 RSELEQQLAQIWREVLNVE---RVGLGDNFFELGGDSILSIQVVSRARQLGIHFSPRDLFQHQTVQTLAAVATH 2777 (4334)
T ss_pred CChHHHHHHHHHHHHhCCC---ccCCCcCHHhcCCchHHHHHHHHHHHHcCCCCCHHHHhcCCCHHHHHHHHhh
Confidence 3467899999999999984 8999999999999999999999999999999999999999999999998864
No 8
>PRK12316 peptide synthase; Provisional
Probab=99.16 E-value=4.3e-11 Score=140.52 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=66.9
Q ss_pred CCchhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHcCCCcchhhhccccCHHHHHHHhhh
Q psy14287 61 DRLPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 61 ~~l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~G~~I~VrDff~apTIaELA~~L~~ 135 (290)
..-++|+.|.++|++|||.+ +||++||||+||||||.|||+++++|+.|+.|++++||++||+++||+.+..
T Consensus 1015 ~~~~~e~~l~~iw~~vL~~~---~i~~~~~Ff~lGgdSl~a~~l~~~~~~~g~~l~~~~~~~~~ti~~la~~~~~ 1086 (5163)
T PRK12316 1015 PRNALERTLAAIWQDVLGVE---RVGLDDNFFELGGDSIVSIQVVSRARQAGIQLSPRDLFQHQTIRSLALVAKA 1086 (5163)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CCCCCCChhhcCCcHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHHh
Confidence 34567999999999999984 8999999999999999999999999999999999999999999999998854
No 9
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.01 E-value=4.5e-10 Score=109.96 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 66 AKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 66 E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.+.|++.|++|||......|+++++||+||||||.||++..+|++. |+.++++++|.+||+++||++|..
T Consensus 547 ~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~ 617 (705)
T PRK06060 547 VDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEA 617 (705)
T ss_pred HHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHH
Confidence 3468899999999865567999999999999999999999999987 999999999999999999999976
No 10
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.00 E-value=7.2e-10 Score=115.83 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 63 LPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 63 l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
-+.|+.|.++|.++||.. ...|++++|||+||||||.||+++++|++. |+.|++.++|.+||+++||+.|..
T Consensus 847 ~~~~~~l~~~~~~vl~~~-~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~ 919 (1389)
T TIGR03443 847 TETEREIRDLWLELLPNR-PATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDR 919 (1389)
T ss_pred CHHHHHHHHHHHHHhCCC-ccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHh
Confidence 467889999999999974 246999999999999999999999999987 999999999999999999998865
No 11
>KOG1178|consensus
Probab=98.99 E-value=1.2e-10 Score=123.59 Aligned_cols=185 Identities=17% Similarity=0.069 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHcCC-CcchhhhccccCHHHHHHHhhhhhhhccc
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGH-QVSVADFVSAQTLGRYTGSLLLSLQRFWM 142 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~G~-~I~VrDff~apTIaELA~~L~~~~~~~~~ 142 (290)
.....+++.|..+++. .-++.++|||+||||||.|++++..||..|+ ..+++-++..+|+..++..+..
T Consensus 598 ~~~~~v~d~~l~~~~~---~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~------- 667 (1032)
T KOG1178|consen 598 LPLSTVFDLWLSIGSL---AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIR------- 667 (1032)
T ss_pred ccccchhhhhhhhcCc---cccCCCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhh-------
Confidence 4456789999999872 5799999999999999999999999999955 9999999999999999987754
Q ss_pred cccCccccccccchhcccccchhhhhhccCCCCCccccccceeeeccchhhhhHHHHHHHhhcchhhhhhhhccCCChhh
Q psy14287 143 TDLGISRLIDGRKICLLEIGDIIDLILSNKAHPGISLSNQYECVFLTHAHKQDLFQIITDSFYEKADLERWIIPELKRDC 222 (290)
Q Consensus 143 td~~~~r~~~~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~l~~~hkedvi~iit~SFyeKadLE~wl~p~i~~~D 222 (290)
.. +....... -....+...-.++..+++.|..||+-+.++..|+++....+.
T Consensus 668 ----~~----~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~t~ 719 (1032)
T KOG1178|consen 668 ----IK----SQEKSSSK--------------------LNHKIELKNLKDRTQLSDTIPKSSPLPLNLSIEVKKSELLTA 719 (1032)
T ss_pred ----hh----hhccchhh--------------------hhhhhhhccccchhhHhhhccccccCCCCCcccccccccccc
Confidence 11 01000000 011111122568889999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHhccceEEEecccccCCCcEEEEEecCCCCCCCccccccchhHHHHHHhhhcCCCC
Q psy14287 223 YVELLEQIWEPLVAARLSFIVKSREVGEGGKILGACLNFDALDEPEVAITSKLNIIFEFLEHLEGPIR 290 (290)
Q Consensus 223 Y~~lle~~W~~Lv~~~LSfvv~~~~~~~~gr~vgv~LNfDa~dEPev~~~s~L~iifefLE~~EgpiR 290 (290)
| .++-..|..++..-|+++++.- ..-.++++..++.+..||+.-.++..+|.+..++..+.+|+
T Consensus 720 ~-~~~~~~~~~l~~~~l~~~~~~~---~~~~~i~~~~~~~a~~e~a~~~~~~~~i~~~~~~~e~~~i~ 783 (1032)
T KOG1178|consen 720 Y-VFLTGYTGYLGRRKLSNLVKLS---NFFYIILVFALVRASSEEASGGRLQDAIQIYGVLNEELLIN 783 (1032)
T ss_pred c-eeeeeccceehhhhhhhhhhhh---hhhheeeeEEEeccCCchhhccchhchhhhhhhccccccce
Confidence 9 9999999999999999999885 66679999999999999999999999999999998888764
No 12
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.72 E-value=5.3e-08 Score=67.80 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 66 AKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 66 E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
...+...|..+++......++.+++||++|+||+.++.+...+++. |..+++.+++.+||+..++..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~ 84 (86)
T smart00823 14 LDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAA 84 (86)
T ss_pred HHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHH
Confidence 5578889999998753223599999999999999999999999987 999999999999999999988765
No 13
>CHL00124 acpP acyl carrier protein; Validated
Probab=98.36 E-value=1.1e-06 Score=66.03 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCeee-ccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNFYQ-IGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFE-LGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
++...|.+++++++|.+ ...|+++++|.+ ||-|||-.+.++..+.++ |+.++..++...+|++++++.+.+
T Consensus 5 ~i~~~l~~ii~~~~~~~-~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~ 77 (82)
T CHL00124 5 DIFEKVQSIVAEQLGIE-KSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQ 77 (82)
T ss_pred HHHHHHHHHHHHHHCCC-HHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHH
Confidence 34567899999999985 368999999998 999999999999999987 999999999999999999999977
No 14
>PRK00982 acpP acyl carrier protein; Provisional
Probab=98.28 E-value=2.1e-06 Score=63.60 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCe-eeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNF-YQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNF-FELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.+...|.+++++++|.+ ...+..+.+| -++|=|||..+.++++++++ |+.++..++.+.+|+++++..+..
T Consensus 3 ~i~~~l~~~l~~~l~~~-~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~ 75 (78)
T PRK00982 3 EIFEKVKKIIVEQLGVD-EEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEK 75 (78)
T ss_pred HHHHHHHHHHHHHHCCC-HHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHH
Confidence 35678999999999986 4779999999 79999999999999999998 999999999999999999998875
No 15
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=98.00 E-value=2e-05 Score=58.63 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCee-eccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNFY-QIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNFF-ELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.+...|.+++++++|.++ ..|..+.+|+ +||=|||-.+.++..+.++ |+.|+..++...+|++++++.+.+
T Consensus 3 ~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~ 75 (77)
T TIGR00517 3 EIFEKVKAIIKEQLNVDE-DQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEE 75 (77)
T ss_pred HHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHh
Confidence 356788999999999853 5799999997 6999999999999999998 999999999999999999998875
No 16
>PRK12449 acyl carrier protein; Provisional
Probab=97.94 E-value=3.4e-05 Score=57.71 Aligned_cols=71 Identities=8% Similarity=0.141 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCee-eccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNFY-QIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNFF-ELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.+.+.|.+++.+++|.+ ...|.++.+|. +||=||+-.+.++..+.++ |+.++..++...+|++++++.+..
T Consensus 5 ~i~~~l~~il~~~~~~~-~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~ 77 (80)
T PRK12449 5 EIFERLINLIQKQRSYL-SLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQ 77 (80)
T ss_pred HHHHHHHHHHHHHhCCC-ccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHH
Confidence 34567889999999975 36899999996 9999999999999999987 999999999999999999999876
No 17
>PRK05883 acyl carrier protein; Validated
Probab=97.87 E-value=5e-05 Score=59.95 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHHHhCCCCcccccccCCee-eccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 63 LPVAKVLFDTVVQVLGSSVRSHVSQSVNFY-QIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 63 l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFF-ELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
-.+...|.++++++||.+. .+|.++.+|+ +||=|||-.+.++..+.+. |+.|+..++...+|+++++..+.+
T Consensus 13 ~~I~~~l~~iia~~l~v~~-~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~ 86 (91)
T PRK05883 13 STVSATLLSILRDDLNVDL-TRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAA 86 (91)
T ss_pred HHHHHHHHHHHHHHhCCCh-hhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHH
Confidence 3567788999999999863 7899999996 6999999999999999987 999999999999999999999976
No 18
>PRK05350 acyl carrier protein; Provisional
Probab=97.85 E-value=4.7e-05 Score=57.87 Aligned_cols=71 Identities=13% Similarity=0.263 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCe-eeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNF-YQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNF-FELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.+.+.|.+++++++|.++ .+|.++.+| -+||=|||-.+.++..|.++ |+.|+..++...+|++++++.+.+
T Consensus 6 ~i~~~v~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~ 78 (82)
T PRK05350 6 EILERLRAILVELFEIDP-EDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVER 78 (82)
T ss_pred HHHHHHHHHHHHHhCCCH-HHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHH
Confidence 345688899999998764 689999995 88999999999999999997 999999999999999999999876
No 19
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.79 E-value=6.8e-05 Score=56.79 Aligned_cols=71 Identities=17% Similarity=0.344 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCeee-ccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNFYQ-IGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFE-LGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.++..+.+++.+.|+.. ...+...+.|.+ ||-|||-++.++..|.+. |+.|+..++...+|+++++..+..
T Consensus 5 ~~~~~i~~ii~e~l~~~-~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~ 77 (80)
T COG0236 5 AIEERVKDIIAEQLGVD-EEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEE 77 (80)
T ss_pred HHHHHHHHHHHHHhCCc-hhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHH
Confidence 46788999999999986 577999999994 999999999999999998 999999999999999999998876
No 20
>PRK09184 acyl carrier protein; Provisional
Probab=97.78 E-value=7.6e-05 Score=59.10 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHhCCC--CcccccccCCeee--ccchhHHHHHHHHHHHHc-CCCcch---hhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSS--VRSHVSQSVNFYQ--IGGNSLNSIYTITKLREA-GHQVSV---ADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s--~r~~Vgl~DNFFE--LGGnSLlAIqVVSrLRe~-G~~I~V---rDff~apTIaELA~~L~~ 135 (290)
+.++.|.+++.+.||.. .-..|.++.+||. ||-|||-++.++..+.+. |+.|+- ..+...+|+++|++++..
T Consensus 6 ~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~~ 85 (89)
T PRK09184 6 ALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVAA 85 (89)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHHH
Confidence 35678899999999841 1268999999976 999999999999999988 999974 446668999999999976
No 21
>PRK07117 acyl carrier protein; Validated
Probab=97.75 E-value=7.9e-05 Score=57.76 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHh-CCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 65 VAKVLFDTVVQVL-GSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 65 ~E~~L~eiw~eVL-G~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
+...|-+++++++ +.+. ..|.++.+|.+||-|||-.+.++..+.+. |+.||-.++-.-.|+++++..+.+
T Consensus 6 i~~~v~~ii~e~~p~i~~-~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~ 77 (79)
T PRK07117 6 IFDILVRHIREVLPDLDQ-HQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYA 77 (79)
T ss_pred HHHHHHHHHHHHcCCCCH-HHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHH
Confidence 4567888999999 5653 68999999999999999999999999987 999999999999999999998875
No 22
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=97.67 E-value=0.00014 Score=56.25 Aligned_cols=72 Identities=13% Similarity=0.256 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHHHhCCCCcccccccCCeeeccc-hhHHHHHHHHHHHHc-CCCcchhhhcc--ccCHHHHHHHhhh
Q psy14287 63 LPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGG-NSLNSIYTITKLREA-GHQVSVADFVS--AQTLGRYTGSLLL 135 (290)
Q Consensus 63 l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGG-nSLlAIqVVSrLRe~-G~~I~VrDff~--apTIaELA~~L~~ 135 (290)
|.++..+.+++.++.+.+. ..++.++++|+.|+ |||-++.++..|.+. |+.|+..++-. ..|++.|++.+.+
T Consensus 1 ~~i~~~I~~iL~~~~~~~~-~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~ 76 (78)
T PRK05087 1 MDFKEQVLDILEELTGEDI-VSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEE 76 (78)
T ss_pred CcHHHHHHHHHHHHhCCCh-hccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHH
Confidence 3467788999999987642 46789999999999 999999999999998 99999999988 8999999988865
No 23
>PRK07081 acyl carrier protein; Provisional
Probab=97.66 E-value=0.00012 Score=56.57 Aligned_cols=70 Identities=10% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCC-CcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhcc--ccCHHHHHHHhhh
Q psy14287 66 AKVLFDTVVQVLGSS-VRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVS--AQTLGRYTGSLLL 135 (290)
Q Consensus 66 E~~L~eiw~eVLG~s-~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~--apTIaELA~~L~~ 135 (290)
++.|.+++.++++.. ....++.+.+|++||=||+.+++++..|.+. |+.|+-.++.. .+|++.+++.+..
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~ 75 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQ 75 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHH
Confidence 457888888985543 2257999999999999999999999999998 99999999976 8999999998876
No 24
>PRK07639 acyl carrier protein; Provisional
Probab=97.43 E-value=0.00061 Score=53.21 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHhCCCCcccccccCCeee-ccchhHHHHHHHHHHHHc-CCCcchhhh--ccccCHHHHHHHhhh
Q psy14287 65 VAKVLFDTVVQVLGSSVRSHVSQSVNFYQ-IGGNSLNSIYTITKLREA-GHQVSVADF--VSAQTLGRYTGSLLL 135 (290)
Q Consensus 65 ~E~~L~eiw~eVLG~s~r~~Vgl~DNFFE-LGGnSLlAIqVVSrLRe~-G~~I~VrDf--f~apTIaELA~~L~~ 135 (290)
+...|.+++++.++.+....+.++.+|++ ||-||+-+++++..|.++ |+.|+-.++ -.-.|++++++.+..
T Consensus 6 i~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 6 LKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred HHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 45678899999998864467999999988 999999999999999998 999999887 467799999998876
No 25
>PRK05828 acyl carrier protein; Validated
Probab=97.28 E-value=0.00079 Score=52.85 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=56.0
Q ss_pred HHHHHHHH-HhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 68 VLFDTVVQ-VLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 68 ~L~eiw~e-VLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.+-+++++ .++.+ ...+.++.+|.+||-|||-.+.++..|.+. |+.|+-.++..-.|+++++..+..
T Consensus 9 ~i~~ii~e~~~~~~-~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~ 77 (84)
T PRK05828 9 KIKEIAKKKNFAVT-LDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKE 77 (84)
T ss_pred HHHHHHHHhccCCC-cccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHH
Confidence 44555554 23332 257889999999999999999999999998 999999999999999999998865
No 26
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=97.24 E-value=0.0011 Score=51.56 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHHHhCCCCcccccccCCe-eeccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 63 LPVAKVLFDTVVQVLGSSVRSHVSQSVNF-YQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 63 l~~E~~L~eiw~eVLG~s~r~~Vgl~DNF-FELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
+.+...+.++++++|+.+. ..|.++.+| =+||-|||-.+.++..|.+. |+.|+-.++..-.|++++++.+..
T Consensus 3 m~i~~~v~~iiae~l~v~~-~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~ 76 (82)
T PRK08172 3 MDIEARVKKVITSCIAVDV-DSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKK 76 (82)
T ss_pred ccHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHH
Confidence 4667789999999999864 789999999 66999999999999999987 999999999999999999998876
No 27
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.22 E-value=0.00066 Score=53.64 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=56.0
Q ss_pred HHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHcCCCcchhhhccccCHHHHHHHhhh
Q psy14287 71 DTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 71 eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~G~~I~VrDff~apTIaELA~~L~~ 135 (290)
+.+.++||.+ ...+-..+|-...|=|||.+|+++.+.|++|+.|+..++.++|||+.--.-|.+
T Consensus 5 ~~~~~Ll~e~-~~~l~dqeNLi~~GLDSiR~M~L~~~wR~~G~~i~F~~La~~PTl~aW~qLl~~ 68 (74)
T COG3433 5 EQIAELLGES-VEELDDQENLIDYGLDSIRMMALLERWRKRGADIDFAQLAANPTLAAWWQLLST 68 (74)
T ss_pred HHHHHHHcCC-hhhcCchhhHHHhchhHHHHHHHHHHHHHcCCcccHHHHHhCccHHHHHHHHHh
Confidence 5667777763 367889999999999999999999999999999999999999999987666655
No 28
>PTZ00171 acyl carrier protein; Provisional
Probab=96.99 E-value=0.0022 Score=55.37 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhCCCCcccccccCCee-eccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 65 VAKVLFDTVVQVLGSSVRSHVSQSVNFY-QIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 65 ~E~~L~eiw~eVLG~s~r~~Vgl~DNFF-ELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
+...|.++++++++.+ .+.|.++.+|. +||=|||-.+.++..+.+. |+.|+..++-.-.|++++++.+..
T Consensus 71 v~~~l~eiiae~l~vd-~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~ 142 (148)
T PTZ00171 71 VLTRVKKVVKNFEKVD-ASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQ 142 (148)
T ss_pred HHHHHHHHHHHHhCCC-HhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHH
Confidence 4557788888888875 36799999997 9999999999999999997 999999999999999999999876
No 29
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=94.96 E-value=0.032 Score=43.45 Aligned_cols=66 Identities=15% Similarity=0.312 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCCCcccccccCCeeeccc-hhHHHHHHHHHHHHc-CCCcchhhhcc--ccCHHHHHHHh
Q psy14287 67 KVLFDTVVQVLGSSVRSHVSQSVNFYQIGG-NSLNSIYTITKLREA-GHQVSVADFVS--AQTLGRYTGSL 133 (290)
Q Consensus 67 ~~L~eiw~eVLG~s~r~~Vgl~DNFFELGG-nSLlAIqVVSrLRe~-G~~I~VrDff~--apTIaELA~~L 133 (290)
..+.++..++.|.+. .....++|+|+.|= ||+-+++++..|.+. |+.||..++-. ..|+..+.+.+
T Consensus 2 e~i~eIL~~i~~~~~-~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v 71 (73)
T TIGR01688 2 NGVLDILAEVTGSDD-VKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKL 71 (73)
T ss_pred hHHHHHHHHHhcCcc-cccCccHHHHHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHH
Confidence 467889999977642 24588999999999 999999999999997 99999998753 34555555443
No 30
>PRK06508 acyl carrier protein; Provisional
Probab=94.62 E-value=0.095 Score=42.06 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHhCCCCcccccccCCe-eeccchhHHHHHHHHHHHHc-CCCcchhhhc-----------cccCHHHHHH
Q psy14287 65 VAKVLFDTVVQVLGSSVRSHVSQSVNF-YQIGGNSLNSIYTITKLREA-GHQVSVADFV-----------SAQTLGRYTG 131 (290)
Q Consensus 65 ~E~~L~eiw~eVLG~s~r~~Vgl~DNF-FELGGnSLlAIqVVSrLRe~-G~~I~VrDff-----------~apTIaELA~ 131 (290)
+...|.++++++++.+ ...|.++.+| =+||=|||-.+.++..+.++ |+.|+-.++- ...++++++.
T Consensus 4 i~ekv~~Ilae~~~vd-~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~~ 82 (93)
T PRK06508 4 TFDKVADIIAETSDIP-RDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLCA 82 (93)
T ss_pred HHHHHHHHHHHHhCCC-HHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHHH
Confidence 3457889999999975 4789999998 57999999999999999998 9999999986 3336677776
Q ss_pred Hhhh
Q psy14287 132 SLLL 135 (290)
Q Consensus 132 ~L~~ 135 (290)
.+..
T Consensus 83 ~i~~ 86 (93)
T PRK06508 83 KIDE 86 (93)
T ss_pred HHHH
Confidence 6654
No 31
>KOG2452|consensus
Probab=92.27 E-value=0.15 Score=52.97 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=63.0
Q ss_pred CchhHHHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc--CCCcchhhhccccCHHHHHHHhhh
Q psy14287 62 RLPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA--GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 62 ~l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~--G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.+.+++.|-.+|..+|..- .+|+-+.+||+-|..|.-.+|++..++.. |..+.-.++|.+||+++..+-+-.
T Consensus 320 e~~t~~~~~~iw~~il~kv--~~v~~~tdff~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir 393 (881)
T KOG2452|consen 320 ELVTAEAVRSVWQRILPKV--LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVR 393 (881)
T ss_pred HHHHHHHHHHHHHHhcchh--eeecccchHhhcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHH
Confidence 3567788899999999743 58999999999999999999999999997 799999999999999998775543
No 32
>KOG1748|consensus
Probab=90.87 E-value=0.31 Score=42.28 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=63.5
Q ss_pred CchhHHHHHHHHHHHhCCCCcccccccCCee-eccchhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 62 RLPVAKVLFDTVVQVLGSSVRSHVSQSVNFY-QIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 62 ~l~~E~~L~eiw~eVLG~s~r~~Vgl~DNFF-ELGGnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
+.++...++++++.-+..++ +.+.++.+|| +||=|||-.+-+|=.|.+. |+.||=.|==.-.|+++.+..+..
T Consensus 51 k~~v~~RVl~VVk~~dki~~-~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~ 125 (131)
T KOG1748|consen 51 KKEVVDRVLDVVKKFDKIDP-SKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIAD 125 (131)
T ss_pred HHHHHHHHHHHHHHhhcCCc-cccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHh
Confidence 35677788899998888764 6688888887 7999999999999999998 999999998888999999998876
No 33
>PRK00754 signal recognition particle protein Srp19; Provisional
Probab=73.94 E-value=7.3 Score=31.87 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=45.6
Q ss_pred HHcCCCcchhhhccccCHHHHHHHhhhhhhhccccccCccccccccchhcccccchhhhhhccCCCCCccccc-cceeee
Q psy14287 109 REAGHQVSVADFVSAQTLGRYTGSLLLSLQRFWMTDLGISRLIDGRKICLLEIGDIIDLILSNKAHPGISLSN-QYECVF 187 (290)
Q Consensus 109 Re~G~~I~VrDff~apTIaELA~~L~~~~~~~~~td~~~~r~~~~~~~~~~~~~~~i~~~~~~~~~p~~~~~~-~~~~~~ 187 (290)
|..|..|+-.-=..+||+.||++.+.+ ||.+ -++|.++.||..+.-+ -+..+
T Consensus 20 r~eGRrv~k~~aV~~P~~~EI~~a~~~---------lgl~-----------------~~~e~~K~yPr~~~e~~GRv~V- 72 (95)
T PRK00754 20 RSEGRIISRKLAVKEPRLEEIIEAAEK---------LGLN-----------------PEVEPDKAYPRSWWEVSGRVLV- 72 (95)
T ss_pred hhhcCccCHHHhccCCCHHHHHHHHHH---------cCCC-----------------eEEeeCCCCCchHhcCCCEEEE-
Confidence 445999999999999999999998887 4444 1456788999986212 12222
Q ss_pred ccchhhhhHHHHHHH
Q psy14287 188 LTHAHKQDLFQIITD 202 (290)
Q Consensus 188 l~~~hkedvi~iit~ 202 (290)
=...-|.+++.+|.+
T Consensus 73 ~~~~~K~~ll~~Ia~ 87 (95)
T PRK00754 73 DKVGSKTNTLRMIAK 87 (95)
T ss_pred CCCCCHHHHHHHHHH
Confidence 134466677776654
No 34
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=72.28 E-value=5.7 Score=32.05 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=41.7
Q ss_pred HcCCCcchhhhccccCHHHHHHHhhhhhhhccccccCccccccccchhcccccchhhhhhccCCCCCccccc-cceeeec
Q psy14287 110 EAGHQVSVADFVSAQTLGRYTGSLLLSLQRFWMTDLGISRLIDGRKICLLEIGDIIDLILSNKAHPGISLSN-QYECVFL 188 (290)
Q Consensus 110 e~G~~I~VrDff~apTIaELA~~L~~~~~~~~~td~~~~r~~~~~~~~~~~~~~~i~~~~~~~~~p~~~~~~-~~~~~~l 188 (290)
..|..|+-.-=..+||+.||+..+.. ||.+ -++|-++.||.++-.+ -...+-+
T Consensus 15 ~~GRrv~k~~aV~~P~~~EI~~a~~~---------Lgl~-----------------~~~E~~K~yPr~~~~~~GRV~V~~ 68 (95)
T PF01922_consen 15 SEGRRVPKELAVENPTLEEIADACKK---------LGLP-----------------CVVEPDKRYPRDWWENPGRVRVQL 68 (95)
T ss_dssp TTT--SSTTTSBSS--HHHHHHHHHH---------TTSE-----------------EEEETTECTTCGSTSCTTEEEEE-
T ss_pred hhccccChhhcCCCCCHHHHHHHHHH---------cCCC-----------------EEEccccCcChhhcccCceEEEEe
Confidence 45999999999999999999998877 4444 1256788999993233 3334444
Q ss_pred cc-------hhhhhHHHHHHH
Q psy14287 189 TH-------AHKQDLFQIITD 202 (290)
Q Consensus 189 ~~-------~hkedvi~iit~ 202 (290)
.+ .-|.+++..|.+
T Consensus 69 ~~~~~~~~~~~K~~Ll~~Ia~ 89 (95)
T PF01922_consen 69 KNDPVNPEIKSKKELLKKIAE 89 (95)
T ss_dssp CSTBSSTTSSSHHHHHHHHHH
T ss_pred CCCcccCCCCCHHHHHHHHHH
Confidence 43 356666666654
No 35
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=63.59 E-value=16 Score=44.26 Aligned_cols=71 Identities=14% Similarity=0.308 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCee-eccchhHHHHHHHHHHHHc-C--CCcchhhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNFY-QIGGNSLNSIYTITKLREA-G--HQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNFF-ELGGnSLlAIqVVSrLRe~-G--~~I~VrDff~apTIaELA~~L~~ 135 (290)
++.+.|.+++.+.+|.+ .+.+.++.+|- +||=|||+.+.++..|++. + ..++..++=...|+++++..+.+
T Consensus 1307 ~v~~~vl~vvae~tgyp-~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~ 1381 (2582)
T TIGR02813 1307 QIQNVMLEVVADKTGYP-TEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQS 1381 (2582)
T ss_pred HHHHHHHHHHHHHhCCC-HHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhh
Confidence 55677899999999986 47799999995 5999999999999999997 5 58888889999999999999865
No 36
>PRK03745 signal recognition particle protein Srp19; Provisional
Probab=60.58 E-value=20 Score=29.85 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=47.0
Q ss_pred HHcCCCcchhhhccccCHHHHHHHhhhhhhhccccccCccccccccchhcccccchhhhhhccCCCCCcc------cccc
Q psy14287 109 REAGHQVSVADFVSAQTLGRYTGSLLLSLQRFWMTDLGISRLIDGRKICLLEIGDIIDLILSNKAHPGIS------LSNQ 182 (290)
Q Consensus 109 Re~G~~I~VrDff~apTIaELA~~L~~~~~~~~~td~~~~r~~~~~~~~~~~~~~~i~~~~~~~~~p~~~------~~~~ 182 (290)
|..|..|+-..=..+|++.||++.+.+ +|.+ ...+|.++.||... ...-
T Consensus 17 r~eGRrv~k~~aV~~P~~~EI~~a~~~---------lgl~----------------~~~~E~~K~yPr~~g~~~~~~~~G 71 (100)
T PRK03745 17 RKYGRIVPKNLAVERPTLEEIVDAAEA---------LGFK----------------VIEVDREKLNPRLSGIDEELRTRG 71 (100)
T ss_pred hhhcCccCHHHcccCCCHHHHHHHHHH---------cCCC----------------cEeeccCCCCCCccCCccchhcCC
Confidence 456999999999999999999998887 3333 12356788899873 1112
Q ss_pred ceeeeccchhhhhHHHHHHHh
Q psy14287 183 YECVFLTHAHKQDLFQIITDS 203 (290)
Q Consensus 183 ~~~~~l~~~hkedvi~iit~S 203 (290)
+..+ =++.-|.+++.+|++.
T Consensus 72 rv~V-~~~~~K~~ll~~Ia~~ 91 (100)
T PRK03745 72 RIVI-ESPYGKSKSLKMIAQK 91 (100)
T ss_pred EEEe-cCCCCHHHHHHHHHHH
Confidence 2222 2455788888887653
No 37
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=57.99 E-value=63 Score=24.62 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=38.9
Q ss_pred eeeccchhhhhHHHHHHHhhcchhhhhhhhccCCChhhHHHHHHHhhHHHHhccceEEEecccccCCCcEEEEEe
Q psy14287 185 CVFLTHAHKQDLFQIITDSFYEKADLERWIIPELKRDCYVELLEQIWEPLVAARLSFIVKSREVGEGGKILGACL 259 (290)
Q Consensus 185 ~~~l~~~hkedvi~iit~SFyeKadLE~wl~p~i~~~DY~~lle~~W~~Lv~~~LSfvv~~~~~~~~gr~vgv~L 259 (290)
+..+++++.+.+.+++.++|=....-. + ...-|..+...+..+++.+ +|++||.+.
T Consensus 2 iR~~~~~d~~~i~~l~~~~F~~~~~~~----------~----~~~~~~~~~~~~~~~~~~~-----~~~ivg~~~ 57 (127)
T PF13527_consen 2 IRPLTESDFEQIIELFNEAFGDSESPP----------E----IWEYFRNLYGPGRCVVAED-----DGKIVGHVG 57 (127)
T ss_dssp EEEE-GGGHHHHHHHHHHHTTT-CHHH----------H----HHHHHHHHHHTTEEEEEEE-----TTEEEEEEE
T ss_pred ceECCHHHHHHHHHHHHHHCCCCCCch----------h----hhhhhhcccCcCcEEEEEE-----CCEEEEEEE
Confidence 457889999999999999994443321 1 1234566677788888866 799999876
No 38
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=52.01 E-value=67 Score=25.28 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=34.4
Q ss_pred ccchhhhhHHHHHHHhhcchhhhhhhhccC---CChhhHHHHHHHhhHHHHhccceEEEecccccCCCcEEEEEe
Q psy14287 188 LTHAHKQDLFQIITDSFYEKADLERWIIPE---LKRDCYVELLEQIWEPLVAARLSFIVKSREVGEGGKILGACL 259 (290)
Q Consensus 188 l~~~hkedvi~iit~SFyeKadLE~wl~p~---i~~~DY~~lle~~W~~Lv~~~LSfvv~~~~~~~~gr~vgv~L 259 (290)
++++..+.+.++..+ ...+.++.+. .+.+.+...++.+.. -.....|+|.. .+|++||++-
T Consensus 4 ~~~~D~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~----~~g~iiG~~~ 67 (155)
T PF13420_consen 4 ATEEDLEEILKLYNE-----PRHEYFFTFEYPEDSEESFERWIESIID--SSKQRLFLVAE----EDGKIIGYVS 67 (155)
T ss_dssp --GGGHHHHHHHHHH-----HHHHTSSSSCSSHS-HHHHHHHHHHHHH--HHTTEEEEEEE----CTTEEEEEEE
T ss_pred CcHHHHHHHHHHHhh-----hhhcceeEecCCCCCHHHHHHHHHHhcc--cCCCcEEEEEE----cCCcEEEEEE
Confidence 334444444444433 2333444444 344555555555543 36788899977 7999999883
No 39
>KOG1202|consensus
Probab=44.79 E-value=19 Score=41.96 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHHc-CCCcchhhh
Q psy14287 67 KVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADF 120 (290)
Q Consensus 67 ~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe~-G~~I~VrDf 120 (290)
..|.++++.+||...-..|..+.+.++||=|||+++-+=.-|... .+-++++++
T Consensus 2007 ~dLiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVLS~qEi 2061 (2376)
T KOG1202|consen 2007 RDLIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVLSAQEI 2061 (2376)
T ss_pred ccHHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceeeeHHHH
Confidence 468999999999987778999999999999999999887777533 556665554
No 40
>PRK10162 acetyl esterase; Provisional
Probab=43.31 E-value=38 Score=31.33 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=47.0
Q ss_pred hhhhhhccCCccccccccCCCCCCchhH-HHHHHHHHHHhCCCCcccccccCCeeeccchhH---HHHHHHHHHHHcCC
Q psy14287 39 WRRLIRADNSTAVQIDYTGIGSDRLPVA-KVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSL---NSIYTITKLREAGH 113 (290)
Q Consensus 39 ~~~~~~~d~~~~~~~Dytgv~~~~l~~E-~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnSL---lAIqVVSrLRe~G~ 113 (290)
.++|...-+-..+.+||...|+...+.. ..+.+.+.-+.... ...+++.+=.-++|||. +|..+..++++.|.
T Consensus 104 ~~~la~~~g~~Vv~vdYrlape~~~p~~~~D~~~a~~~l~~~~--~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~ 180 (318)
T PRK10162 104 MRLLASYSGCTVIGIDYTLSPEARFPQAIEEIVAVCCYFHQHA--EDYGINMSRIGFAGDSAGAMLALASALWLRDKQI 180 (318)
T ss_pred HHHHHHHcCCEEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhH--HHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCC
Confidence 3445444466778999999998876542 34444444443221 24566667788999997 66677777777654
No 41
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=41.49 E-value=64 Score=29.16 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=63.2
Q ss_pred hhhhhhhhccCCccccccccCCCCCCchhH-HHHHHHHHHHhCCCCcccccccCCeeeccchh---HHHHHHHHHHHHcC
Q psy14287 37 PRWRRLIRADNSTAVQIDYTGIGSDRLPVA-KVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNS---LNSIYTITKLREAG 112 (290)
Q Consensus 37 ~~~~~~~~~d~~~~~~~Dytgv~~~~l~~E-~~L~eiw~eVLG~s~r~~Vgl~DNFFELGGnS---LlAIqVVSrLRe~G 112 (290)
.-.+++...-.-+.+-+||.=.|+...+.. ..+.+.+.-+.... .+.|.+-+..-++||| -+|..++..+|++|
T Consensus 100 ~~~~~~~~~~g~~vv~vdYrlaPe~~~p~~~~d~~~a~~~l~~~~--~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~ 177 (312)
T COG0657 100 ALVARLAAAAGAVVVSVDYRLAPEHPFPAALEDAYAAYRWLRANA--AELGIDPSRIAVAGDSAGGHLALALALAARDRG 177 (312)
T ss_pred HHHHHHHHHcCCEEEecCCCCCCCCCCCchHHHHHHHHHHHHhhh--HhhCCCccceEEEecCcccHHHHHHHHHHHhcC
Confidence 345778888899999999999999988762 22444555554322 3578888999999999 58888889999876
Q ss_pred CCcchhhhccccC
Q psy14287 113 HQVSVADFVSAQT 125 (290)
Q Consensus 113 ~~I~VrDff~apT 125 (290)
...+...++-+|.
T Consensus 178 ~~~p~~~~li~P~ 190 (312)
T COG0657 178 LPLPAAQVLISPL 190 (312)
T ss_pred CCCceEEEEEecc
Confidence 6655555555554
No 42
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=39.20 E-value=1.3e+02 Score=25.00 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=42.7
Q ss_pred cceeeeccchhhhhHHHHHHHhhcchhhhhhhhccC----CChhhHHHHHHHhhHHHHhc--cceEEEecccccCCCcEE
Q psy14287 182 QYECVFLTHAHKQDLFQIITDSFYEKADLERWIIPE----LKRDCYVELLEQIWEPLVAA--RLSFIVKSREVGEGGKIL 255 (290)
Q Consensus 182 ~~~~~~l~~~hkedvi~iit~SFyeKadLE~wl~p~----i~~~DY~~lle~~W~~Lv~~--~LSfvv~~~~~~~~gr~v 255 (290)
.+...++++++-+.+.+++.+. ++-+..|..+. ...+++...... +....+. ...|++... .+|++|
T Consensus 17 rl~LR~~~~~Da~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~---~~~~~i 89 (194)
T PRK10809 17 RLVVRLVHERDAWRLADYYAEN---RHFLKPWEPVRDESHCYPSGWQARLGM-INEFHKQGSAFYFALLDP---DEKEII 89 (194)
T ss_pred cEEEEeCCHHHHHHHHHHHHhC---HHhccCCCCCCcccccCHHHHHHHHHH-HHHHHhcCcEEEEEEEEC---CCCeEE
Confidence 6888899999999999988763 23444565331 112334333332 3333332 346777664 578999
Q ss_pred EEEe
Q psy14287 256 GACL 259 (290)
Q Consensus 256 gv~L 259 (290)
|.+.
T Consensus 90 G~i~ 93 (194)
T PRK10809 90 GVAN 93 (194)
T ss_pred EEEE
Confidence 9865
No 43
>PRK09831 putative acyltransferase; Provisional
Probab=38.18 E-value=44 Score=26.73 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=37.3
Q ss_pred eeeccchhhhhHHHHHHHhhcc-------hhhhhhhhccCCChhhHHHHHHHhhHHHHhccceEEEecccccCCCcEEEE
Q psy14287 185 CVFLTHAHKQDLFQIITDSFYE-------KADLERWIIPELKRDCYVELLEQIWEPLVAARLSFIVKSREVGEGGKILGA 257 (290)
Q Consensus 185 ~~~l~~~hkedvi~iit~SFye-------KadLE~wl~p~i~~~DY~~lle~~W~~Lv~~~LSfvv~~~~~~~~gr~vgv 257 (290)
+...++.+-+.+.+|..+++-+ .+.+++|. ... ...|...++.+..+++. .+|+++|.
T Consensus 3 ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~v~~-----~~~~iiG~ 67 (147)
T PRK09831 3 IRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWA--QID--------ESRWKEKLAKSQVRVAV-----INAQPVGF 67 (147)
T ss_pred cccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhcc--CCC--------HHHHHHHHhcCceEEEE-----ECCEEEEE
Confidence 4455677788888888877533 33444443 111 23555666767766663 47899998
Q ss_pred Ee
Q psy14287 258 CL 259 (290)
Q Consensus 258 ~L 259 (290)
+.
T Consensus 68 ~~ 69 (147)
T PRK09831 68 IT 69 (147)
T ss_pred EE
Confidence 75
No 44
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.89 E-value=17 Score=39.96 Aligned_cols=44 Identities=18% Similarity=0.424 Sum_probs=31.4
Q ss_pred cccCCCCCCc-----hhHHHHHHHHHHHhCCCCc--ccccccCCeeecc-ch
Q psy14287 54 DYTGIGSDRL-----PVAKVLFDTVVQVLGSSVR--SHVSQSVNFYQIG-GN 97 (290)
Q Consensus 54 Dytgv~~~~l-----~~E~~L~eiw~eVLG~s~r--~~Vgl~DNFFELG-Gn 97 (290)
++-|+|+++| +....-+.+|.+.+|.+.- -++|..|||.+.| |+
T Consensus 116 ~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~G~GP 167 (879)
T COG0013 116 KVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEMGDGP 167 (879)
T ss_pred hhcCCCHHHEEEEEecCchHHHHHHHhhcCCCHHHeeecCcCCCCCCCCCcC
Confidence 4567777777 3345556799999887521 2478899999999 54
No 45
>KOG3235|consensus
Probab=33.76 E-value=44 Score=30.83 Aligned_cols=27 Identities=44% Similarity=0.740 Sum_probs=20.8
Q ss_pred ccceEEEecccccCCCcEEEEEe---cCCCCCCC
Q psy14287 237 ARLSFIVKSREVGEGGKILGACL---NFDALDEP 267 (290)
Q Consensus 237 ~~LSfvv~~~~~~~~gr~vgv~L---NfDa~dEP 267 (290)
-.||||..| ++|||||-.| +=|--|+|
T Consensus 40 p~lSyVA~D----~~gkiVGYvlAkmee~p~~~~ 69 (193)
T KOG3235|consen 40 PQLSYVAED----ENGKIVGYVLAKMEEDPDDEP 69 (193)
T ss_pred ccceEEEEc----CCCcEEEEeeeehhhcccCCC
Confidence 478999998 9999999888 33444555
No 46
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=32.47 E-value=54 Score=26.01 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.6
Q ss_pred ceEEEecccccCCCcEEEEEecCCCCCCCccc
Q psy14287 239 LSFIVKSREVGEGGKILGACLNFDALDEPEVA 270 (290)
Q Consensus 239 LSfvv~~~~~~~~gr~vgv~LNfDa~dEPev~ 270 (290)
-+|++ | .+|+++.+-++++.+++|+++
T Consensus 112 ~~~ii-d----~~G~I~~~~~~~~~~~~~~~~ 138 (143)
T cd03014 112 AVFVI-D----ENGKVIYVELVPEITDEPDYE 138 (143)
T ss_pred EEEEE-c----CCCeEEEEEECCCcccCCCHH
Confidence 35777 6 799999999999999999986
No 47
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=31.45 E-value=69 Score=31.60 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhCCCCcccccccCCeeecc-chhHHHHHHHHHHHHcCC-----CcchhhhccccCHHH
Q psy14287 65 VAKVLFDTVVQVLGSSVRSHVSQSVNFYQIG-GNSLNSIYTITKLREAGH-----QVSVADFVSAQTLGR 128 (290)
Q Consensus 65 ~E~~L~eiw~eVLG~s~r~~Vgl~DNFFELG-GnSLlAIqVVSrLRe~G~-----~I~VrDff~apTIaE 128 (290)
+|.+++...+.-+.. .+| .+.|.||| |||-++-.+...++.+|+ .|+|..=+-..|...
T Consensus 61 tEaaIl~~~a~Eia~----~~g-~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~a 125 (321)
T COG4301 61 TEAAILQARAAEIAS----ITG-ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATA 125 (321)
T ss_pred hHHHHHHHHHHHHHH----hhC-cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHH
Confidence 466666555444421 344 78999999 999999999999999765 445544333334333
No 48
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=31.38 E-value=22 Score=32.06 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=28.0
Q ss_pred cccccCCeeecc---chhHHHHHHHHHHHHc-CCCcchhhhccccCHHHHHHHhhh
Q psy14287 84 HVSQSVNFYQIG---GNSLNSIYTITKLREA-GHQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 84 ~Vgl~DNFFELG---GnSLlAIqVVSrLRe~-G~~I~VrDff~apTIaELA~~L~~ 135 (290)
.++.+|-|++|| |+-+.++-+.+.++.. |+++. |.+.++|..+..
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~-------~~~~~~a~~~~~ 87 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEIL-------PELHDLAEELLE 87 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-S-------HHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEec-------hHHHHHHHHHHH
Confidence 578899999999 7777777667776643 77765 556777766554
No 49
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=30.12 E-value=86 Score=22.92 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=31.0
Q ss_pred hcchhhhhhhhccCCChhhHHHHHHHhhHHHHhccce-EEEecccccCCCcEEEEEe
Q psy14287 204 FYEKADLERWIIPELKRDCYVELLEQIWEPLVAARLS-FIVKSREVGEGGKILGACL 259 (290)
Q Consensus 204 FyeKadLE~wl~p~i~~~DY~~lle~~W~~Lv~~~LS-fvv~~~~~~~~gr~vgv~L 259 (290)
++....+...+.+.+..-+..+-+.+....+.+.+.+ +.|-+ ++|+++|+.-
T Consensus 54 ~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd----~~g~~~Gvvt 106 (113)
T cd04615 54 ELKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLD----DKGKVGGIVT 106 (113)
T ss_pred hhcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEEC----CCCeEEEEEE
Confidence 3333344555555555455555566777777777654 33435 5789999864
No 50
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=29.83 E-value=81 Score=26.67 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=39.9
Q ss_pred cceeeeccchhhhhHHHHHHHhhcchhhhhhhhccCCChhhHHHHHHHhhHHHHh---ccceEEEecccccCCCcEEEEE
Q psy14287 182 QYECVFLTHAHKQDLFQIITDSFYEKADLERWIIPELKRDCYVELLEQIWEPLVA---ARLSFIVKSREVGEGGKILGAC 258 (290)
Q Consensus 182 ~~~~~~l~~~hkedvi~iit~SFyeKadLE~wl~p~i~~~DY~~lle~~W~~Lv~---~~LSfvv~~~~~~~~gr~vgv~ 258 (290)
.....++++++-+.+.++..+.|-... +..|...+.+-...++......+. ...++++.. .+|++||.+
T Consensus 43 ~~~lR~~~~~D~~~l~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~g~iiG~i 114 (191)
T TIGR02382 43 DPGARVATETDIPALRQLASAAFALSR----FRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRD----ASGDPRGYV 114 (191)
T ss_pred CCcceeCChhhHHHHHHHHHHHhhccc----cCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEc----cCCeEEEEE
Confidence 356778889999999999998874322 222222233323333332222221 234565544 578999986
Q ss_pred e
Q psy14287 259 L 259 (290)
Q Consensus 259 L 259 (290)
.
T Consensus 115 ~ 115 (191)
T TIGR02382 115 T 115 (191)
T ss_pred E
Confidence 5
No 51
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=29.62 E-value=89 Score=38.27 Aligned_cols=71 Identities=14% Similarity=0.311 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHhCCCCcccccccCCe-eeccchhHHHHHHHHHHHHc-C--CCcchhhhccccCHHHHHHHhhh
Q psy14287 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNF-YQIGGNSLNSIYTITKLREA-G--HQVSVADFVSAQTLGRYTGSLLL 135 (290)
Q Consensus 64 ~~E~~L~eiw~eVLG~s~r~~Vgl~DNF-FELGGnSLlAIqVVSrLRe~-G--~~I~VrDff~apTIaELA~~L~~ 135 (290)
++.+.|++++.+..|-+ .+.+.++-+| .+||-|||+.+.++..|++. + ..+...++-+.+|+++++..+.+
T Consensus 1211 ~~~~~~l~vvae~tgyp-~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~ 1285 (2582)
T TIGR02813 1211 AIQQVMMEVVAEKTGYP-TEMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQS 1285 (2582)
T ss_pred HHHHHHHHHHHhhccCC-hHhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhcc
Confidence 35677888888888874 3556676666 45999999999999999987 4 58889999999999999988854
No 52
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=27.47 E-value=60 Score=23.48 Aligned_cols=22 Identities=32% Similarity=0.850 Sum_probs=14.8
Q ss_pred ccceEEEecccccCCCcEEEEEecC
Q psy14287 237 ARLSFIVKSREVGEGGKILGACLNF 261 (290)
Q Consensus 237 ~~LSfvv~~~~~~~~gr~vgv~LNf 261 (290)
.--+||+.+. .+.|+-|+||.|
T Consensus 43 ~~f~FvLT~~---~G~r~Yg~Cl~f 64 (65)
T PF03456_consen 43 QFFSFVLTDE---DGSRLYGYCLRF 64 (65)
T ss_dssp CEEEEEEE-T---TS-EEEEEEEE-
T ss_pred eEEEEEEECC---CCCEEEEEEEEC
Confidence 4458999884 455899999987
No 53
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=26.97 E-value=51 Score=27.64 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=23.9
Q ss_pred eeeccchhH---HHHHHHHHHHHcCCCcchhhhcc
Q psy14287 91 FYQIGGNSL---NSIYTITKLREAGHQVSVADFVS 122 (290)
Q Consensus 91 FFELGGnSL---lAIqVVSrLRe~G~~I~VrDff~ 122 (290)
=|-|+|+|. +|.-++.+|.++|..+.--=++.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 688999985 77788999999999776444555
No 54
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=26.20 E-value=64 Score=26.83 Aligned_cols=23 Identities=43% Similarity=1.018 Sum_probs=19.5
Q ss_pred ccceEEEecccccCCCcEEEE-EecCCC
Q psy14287 237 ARLSFIVKSREVGEGGKILGA-CLNFDA 263 (290)
Q Consensus 237 ~~LSfvv~~~~~~~~gr~vgv-~LNfDa 263 (290)
+.-+|.++| ++|+++|+ |+|||.
T Consensus 83 rSsT~~Ird----~~g~~iG~LCIN~D~ 106 (118)
T PF08348_consen 83 RSSTFFIRD----ENGKLIGALCINFDI 106 (118)
T ss_pred EEEEEEEEC----CCCCEEEEEEEEecc
Confidence 567899999 89999986 559996
No 55
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=24.62 E-value=2e+02 Score=25.82 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=44.1
Q ss_pred cceeeeccchhhhhHHHHHHHhhcchhhhhhhhccCCChhhHHHHHHHhhHHH-HhccceEEEecccccCCCcEEEEEe
Q psy14287 182 QYECVFLTHAHKQDLFQIITDSFYEKADLERWIIPELKRDCYVELLEQIWEPL-VAARLSFIVKSREVGEGGKILGACL 259 (290)
Q Consensus 182 ~~~~~~l~~~hkedvi~iit~SFyeKadLE~wl~p~i~~~DY~~lle~~W~~L-v~~~LSfvv~~~~~~~~gr~vgv~L 259 (290)
.+.+...++.+-..|-+|+.++|= ...-+.+++.+=+.. -+..||||..+ + |.+||-.|
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~--------------~~~e~~~v~~lR~~~~~~~~LslVA~d----~-g~vvG~Il 62 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFG--------------PGREAKLVDKLREGGRPDLTLSLVAED----D-GEVVGHIL 62 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhh--------------cchHHHHHHHHHhcCCcccceeEEEee----C-CEEEEEEE
Confidence 456677788888899999999996 333445566655543 36789999988 6 99999766
No 56
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=24.52 E-value=2.7e+02 Score=25.19 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=32.5
Q ss_pred cccchhhhhhccCCCCCccccccceeeeccchhhhhHHHHHHHhh
Q psy14287 160 EIGDIIDLILSNKAHPGISLSNQYECVFLTHAHKQDLFQIITDSF 204 (290)
Q Consensus 160 ~~~~~i~~~~~~~~~p~~~~~~~~~~~~l~~~hkedvi~iit~SF 204 (290)
++..++..+++-+..|....-..+++.++++++-+++.++..+.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~IR~a~~~D~~~l~~L~~~v~ 137 (266)
T TIGR03827 93 KEDEVLEAALSKPRKPKIALPEGFTLRIATEDDADAMAALYRKVF 137 (266)
T ss_pred HHHHHHHHHHhccCCCccCCCCceEEEECCHHHHHHHHHHHHHHh
Confidence 344567777666555543223378999999999999999998887
No 57
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=24.45 E-value=97 Score=23.05 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=28.4
Q ss_pred hhhccCCChhhHHHHHHHhhHHHHhccceEE-EecccccCCCcEEEEEecCC
Q psy14287 212 RWIIPELKRDCYVELLEQIWEPLVAARLSFI-VKSREVGEGGKILGACLNFD 262 (290)
Q Consensus 212 ~wl~p~i~~~DY~~lle~~W~~Lv~~~LSfv-v~~~~~~~~gr~vgv~LNfD 262 (290)
..+.+.+..-...+-+.++.+.+...+.+++ |-+ ++|+++|+.---|
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~----~~g~~~Gvit~~d 120 (124)
T cd04600 73 DIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD----EDRRLVGIVTQTD 120 (124)
T ss_pred HhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc----CCCCEEEEEEhHH
Confidence 3343333333344455667777788777744 545 5799999975443
No 58
>KOG0304|consensus
Probab=23.92 E-value=1e+02 Score=29.53 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCcccccccCCeeeccchhHHHHHHHHHHHH
Q psy14287 70 FDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLRE 110 (290)
Q Consensus 70 ~eiw~eVLG~s~r~~Vgl~DNFFELGGnSLlAIqVVSrLRe 110 (290)
++.+++.||.. +||+ +-+.|+|||+.-++-.||++
T Consensus 203 L~~lA~~L~~~---RvG~---~HqAGSDSlLT~~~F~kl~~ 237 (239)
T KOG0304|consen 203 LQRLADLLGLK---RVGI---AHQAGSDSLLTARVFFKLKE 237 (239)
T ss_pred HHHHHHHhCCC---eeec---ccccCcHHHHHHHHHHHHHh
Confidence 56788999984 7887 45799999999999999986
No 59
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.51 E-value=1.5e+02 Score=21.55 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHhhcchhhhhhhhccCCChhhHHHHHHHhhHHHHhccceE-EEecccccCCCcEEEEEe
Q psy14287 192 HKQDLFQIITDSFYEKADLERWIIPELKRDCYVELLEQIWEPLVAARLSF-IVKSREVGEGGKILGACL 259 (290)
Q Consensus 192 hkedvi~iit~SFyeKadLE~wl~p~i~~~DY~~lle~~W~~Lv~~~LSf-vv~~~~~~~~gr~vgv~L 259 (290)
+..++...+.+.+.....+..++.+.+..-...+-+...-+-+.+.+.++ .|-+ ++|+++|+.-
T Consensus 41 ~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~----~~g~~~Gilt 105 (112)
T cd04624 41 TERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD----KGGELVGVIS 105 (112)
T ss_pred eHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEc----CCCcEEEEEE
Confidence 34444444444333333444555444332222222233334445555553 2224 5689999864
No 60
>PRK10514 putative acetyltransferase; Provisional
Probab=22.33 E-value=3.8e+02 Score=20.81 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=34.5
Q ss_pred eeeeccchhhhhHHHHHHHhhcchhhhhhhhccCCChhhHHHHHHHhhHHHHhccceEEEecccccCCCcEEEEEe
Q psy14287 184 ECVFLTHAHKQDLFQIITDSFYEKADLERWIIPELKRDCYVELLEQIWEPLVAARLSFIVKSREVGEGGKILGACL 259 (290)
Q Consensus 184 ~~~~l~~~hkedvi~iit~SFyeKadLE~wl~p~i~~~DY~~lle~~W~~Lv~~~LSfvv~~~~~~~~gr~vgv~L 259 (290)
...++++++-+.+.++..+++-.-. .|+.|. .++. ++..+..++....-+++.. .+|++||.+.
T Consensus 3 ~ir~~~~~D~~~l~~l~~~~~~~~~---~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~iG~~~ 66 (145)
T PRK10514 3 SIRRSRHEEGERLVAIWRRSVDATH---DFLSAE-DRAE----IEELVRSFLPEAPLWVAVD----ERDQPVGFML 66 (145)
T ss_pred eeeecchhhHHHHHHHHHHHHHHhC---cccCch-hHHH----HHHHHHHHhccCceEEEEe----cCCcEEEEEE
Confidence 3456778888899998877652211 133221 2222 2333333443333345432 5789999775
No 61
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=21.24 E-value=38 Score=33.17 Aligned_cols=30 Identities=23% Similarity=0.660 Sum_probs=27.7
Q ss_pred HHHHHHhhcchhhhhhhhccCCChhhHHHH
Q psy14287 197 FQIITDSFYEKADLERWIIPELKRDCYVEL 226 (290)
Q Consensus 197 i~iit~SFyeKadLE~wl~p~i~~~DY~~l 226 (290)
.-|||||-|.=--+-|||..-+.++||..+
T Consensus 255 lamitEs~f~WPGiGRWLi~Ai~qqDy~sI 284 (321)
T COG4168 255 LAMITESVFGWPGIGRWLINAIRQQDYASI 284 (321)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHhhhhHHh
Confidence 359999999999999999999999999875
No 62
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=20.99 E-value=98 Score=23.82 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=17.9
Q ss_pred ccceEEEecccccCCCcEEEEEecC
Q psy14287 237 ARLSFIVKSREVGEGGKILGACLNF 261 (290)
Q Consensus 237 ~~LSfvv~~~~~~~~gr~vgv~LNf 261 (290)
.--|||+.+. .+.|..|+|++|
T Consensus 67 ~~f~FvLT~~---dG~r~yG~Cl~f 88 (89)
T smart00800 67 QFFSFVLTDI---DGSRRYGFCRRF 88 (89)
T ss_pred cEEEEEEECC---CCCEEEEEEEEe
Confidence 4567999885 667899999987
No 63
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=20.14 E-value=1.9e+02 Score=21.89 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=24.7
Q ss_pred hhHHHHHHHhhHHHHhc-cceEEEecccccCCCcEEEEEecCCCCC
Q psy14287 221 DCYVELLEQIWEPLVAA-RLSFIVKSREVGEGGKILGACLNFDALD 265 (290)
Q Consensus 221 ~DY~~lle~~W~~Lv~~-~LSfvv~~~~~~~~gr~vgv~LNfDa~d 265 (290)
.-..+.+..++..+.+. ++.+.+-- .+|++||++++|-..+
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~l~~~~----~~g~~va~~~~~~~~~ 93 (142)
T PF13480_consen 52 PFSRDFFRDLLRSLAESGRLRLFVLY----DGGEPVAFALGFRHGG 93 (142)
T ss_pred cchHHHHHHHHHhhccCCCEEEEEEE----ECCEEEEEEEEEEECC
Confidence 34455666666666432 23333322 4699999999886544
Done!