RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14287
(290 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 2e-07
Identities = 46/317 (14%), Positives = 95/317 (29%), Gaps = 70/317 (22%)
Query: 23 QEEGEEWTQTAQDRPRWRRLI---RADNSTAVQ--------IDYTGIGS-----DRLPVA 66
+EE + + RL + VQ I+Y + S R P
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 67 K-VLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVS--- 122
++ L + + +V+ + KLR+A ++ A V
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALLELRPAKNVLIDG 157
Query: 123 ----------AQTLGRYTGSLLLSLQRFWMTDLGISRLIDGRKICLLEIGDIIDLILSNK 172
Y + + FW+ L + L ++ ID +++
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 173 AHPGISLSNQYECV-------FLTHAHKQDLFQIITDSFYEKADLERWIIPELKRDCYVE 225
+ ++ + + + ++ L ++ + C +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNA-----KAWNAFNLSCKI- 268
Query: 226 LL----EQIWEPLVAAR-----LSFIVKSREVGEGGKILGACLNFDALDEPEVAITS--- 273
LL +Q+ + L AA L + E +L L+ D P +T+
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 274 KLNIIFEFLEHLEGPIR 290
+L+II E + +G
Sbjct: 329 RLSIIAESIR--DGLAT 343
Score = 39.5 bits (91), Expect = 0.001
Identities = 40/293 (13%), Positives = 80/293 (27%), Gaps = 98/293 (33%)
Query: 19 IKSQQEEGEEWTQTAQDRPRWRR-LIRADNSTAVQ----IDYTGIGSDRLPVAKVLFDT- 72
IK + + + + L+ N VQ + + K+L T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLSC------KILLTTR 273
Query: 73 ---VVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVADFVSAQTLGRY 129
V L ++ +H+S ++ + + +
Sbjct: 274 FKQVTDFLSAATTTHIS--LDHHSMT------------------------LTPDEVKS-- 305
Query: 130 TGSLLLSLQRFWMTDLGISRL-IDGRKICLLEIGDIIDLILSNKAHPGISLSNQYECVFL 188
LL + D L + + I + I G++ + ++
Sbjct: 306 ----LLLK---Y-LDCRPQDLPREVLTTNPRRLSIIAESI-----RDGLATWDNWK---- 348
Query: 189 THAHKQDLFQIITDSFYEKADLERWIIPELKRDCYVEL-------------LEQIWEPLV 235
H + L II +S LE P R + L L IW +
Sbjct: 349 -HVNCDKLTTII-ESSLNV--LE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV- 399
Query: 236 AARLSFIVKSREVGEGGKILGACLNFDALDE-PEVAITSKLNIIFEFLEHLEG 287
+V ++ + +++ P+ + S +I E LE
Sbjct: 400 --------IKSDVMV---VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Score = 33.3 bits (75), Expect = 0.11
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 24/99 (24%)
Query: 190 HAHKQDLFQIITDSFYEKADLERWIIPELKRDCYVELLEQIWEPLVAARLSFIVKSREVG 249
+D+ + D+F + DC ++ + L + I+ S++
Sbjct: 15 QYQYKDILSVFEDAF--VDNF----------DCK-DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 250 EGGKILGACLNFDALDEPEVAITSKLNIIFEFLEHLEGP 288
G L L L + E ++ +F+E +
Sbjct: 62 SGTLRLFWTL----LSKQE-------EMVQKFVEEVLRI 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 39/179 (21%)
Query: 112 GHQVSVADFVSAQTLGRYTGSLLLSLQRFWMTDLG-------ISRLIDGRKICLLEIGDI 164
G+ V+ V +G++ L L L F L ++L+ L++ ++
Sbjct: 66 GY---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 165 IDLILSNKAHPGISLSNQYECVFLTHAHKQD-----LF--QIITDSFYEKADLERWIIPE 217
I ++ + + + + +F Q TD ++E E
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE----------E 172
Query: 218 LKRDCYVELLEQIWEPLVAARLSFIVK-----SREVGEGGKILGACLNFDA-LDEPEVA 270
L RD Y Q + LV + F + R + K+ LN L+ P
Sbjct: 173 L-RDLY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Score = 41.6 bits (97), Expect = 3e-04
Identities = 35/244 (14%), Positives = 65/244 (26%), Gaps = 97/244 (39%)
Query: 66 AKVLFDTVVQVLGSS--VRSHVSQSVNFYQI--G-GNS------LNSIYTITKLREAGHQ 114
A+++ +S R+ + I G GN+ L +Y +
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-------YH 181
Query: 115 VSVADFVSAQTLGRYTGSLLLSLQRFWMTDLGISRLIDGRKICLLEIGDIIDLI--LSNK 172
V V D + + L L I +D K+ ++++ L N
Sbjct: 182 VLVGDLIKF------SAETLSEL---------IRTTLDAEKVF----TQGLNILEWLENP 222
Query: 173 AH--------------PGISLSN--QYECVF-----LTHAHKQDLFQ--------IIT-- 201
++ P I + Y V T + + ++T
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 202 --------DSFYEKADLERWIIPELKRDCYVELLEQI-WE-----PLVAARLSFIVKSRE 247
+SF+ + +L I P + S + S E
Sbjct: 282 AIAETDSWESFFVSVRK------------AITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 248 VGEG 251
EG
Sbjct: 330 NNEG 333
Score = 35.0 bits (80), Expect = 0.029
Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 41/125 (32%)
Query: 167 LILSNKAHPGISLSNQYECVFL----THAHKQDLFQIITDSFYEKADLERWIIPELKRDC 222
L LS H + E V L + L + F + I+PE
Sbjct: 9 LTLS---HGSL------EHVLLVPTASFFIASQL----QEQFNK-------ILPEPTEG- 47
Query: 223 YVELLEQIWEP-----LVAARLSFIVKSREVGEGGK---ILGACLN-FDA--LDEPEV-A 270
EP LV L ++ E + G+ +L CL F+ L+ ++ A
Sbjct: 48 ----FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 271 ITSKL 275
+ +KL
Sbjct: 104 LAAKL 108
Score = 31.9 bits (72), Expect = 0.26
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 34/124 (27%)
Query: 11 SALVGFGGIKSQQEEGEEWTQTAQDRPRWR-RLIRADNSTAVQIDYTGIGSDRL----P- 64
+AL + S ++ + +R ++ AV D G + + P
Sbjct: 1768 AALASLADVMS--------IESLVEVVFYRGMTMQ----VAVPRDELGRSNYGMIAINPG 1815
Query: 65 -VAKVL----FDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREAGHQVSVAD 119
VA VV+ +G V + VN+ N N Y AG ++
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLV-EIVNY-----NVENQQYVA-----AGDLRALDT 1864
Query: 120 FVSA 123
+
Sbjct: 1865 VTNV 1868
Score = 29.6 bits (66), Expect = 1.7
Identities = 39/273 (14%), Positives = 77/273 (28%), Gaps = 106/273 (38%)
Query: 57 GIGSD---RLPVAKVLFDT----VVQVLGSSVRSHV-----SQSVNFYQIGGNSLNSIYT 104
G+G D A+ +++ G S+ V + +++F G
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK------- 1682
Query: 105 ITKLREAGHQVSVADFVSAQTLGRYTGSLLLSLQRFWMTDLGISRLIDGRKICLLEIGDI 164
++RE Y+ M ++DG+ +I
Sbjct: 1683 --RIRE-----------------NYSA----------MI---FETIVDGKLKT-EKIFKE 1709
Query: 165 IDLILSNKAHPGISLSNQYECVFLTHAHKQDLF-Q--IITDSF--YEKADLERW-IIPEL 218
I+ + + ++ + T F Q + +E DL+ +IP
Sbjct: 1710 INEHST-----SYTFRSEKGLLSATQ------FTQPALTLMEKAAFE--DLKSKGLIPA- 1755
Query: 219 KRDCYV------E---L--------LEQIWEPLVAAR---LSFIVKSREVGEGGKILGAC 258
D E L +E + E +V R + V E+G + A
Sbjct: 1756 --DATFAGHSLGEYAALASLADVMSIESLVE-VVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 259 --------LNFDALDEPEVAITSKLNIIFEFLE 283
+ +AL + + +E
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTG---WLVE 1842
Score = 29.2 bits (65), Expect = 1.7
Identities = 32/256 (12%), Positives = 64/256 (25%), Gaps = 122/256 (47%)
Query: 6 KEDKSSALVGFGGIKSQQEEGEEWTQTAQDRPRWRRLIRADNSTAVQIDYTGIGSDRLPV 65
+ + + FGG K ++ IR +N +A+ + D
Sbjct: 1666 INNPVNLTIHFGGEKGKR-------------------IR-ENYSAMIFETI---VDGKLK 1702
Query: 66 AKVLFDTVVQVLGSSVRSH---------VSQ------SVNFYQI----GGNSLNSIYTIT 106
+ +F + + S +Q ++ G ++ +
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF--- 1759
Query: 107 KLREAGHQVSVADFVSAQTLGRYT------GSL----LLSL--QR--------------- 139
AGH S LG Y + L+ + R
Sbjct: 1760 ----AGH--S---------LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 140 --FWMTDLGISRLIDG------RKIC---------LLEI-------------GDIIDL-- 167
+ M + R+ + + L+EI GD+ L
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 168 ---ILSNKAHPGISLS 180
+L+ I +
Sbjct: 1865 VTNVLNFIKLQKIDII 1880
>4fd7_A Putative arylalkylamine N-acetyltransferase 7; GNAT, COA binding;
1.80A {Aedes aegypti}
Length = 238
Score = 34.4 bits (78), Expect = 0.031
Identities = 12/105 (11%), Positives = 36/105 (34%), Gaps = 1/105 (0%)
Query: 182 QYECVFLTHAHKQDLFQIITDSFYEKADLERWIIPELKRDCYVELLEQIWEPLVAARLSF 241
Y L +D + + D F + + K + + +W+ ++ R+S
Sbjct: 30 WYRVQDLPEDRFEDAIRHMCDYFARDELMNQ-AKGLAKDLVAMGDVVALWKAMLPDRMSL 88
Query: 242 IVKSREVGEGGKILGACLNFDALDEPEVAITSKLNIIFEFLEHLE 286
+ E + + + + ++ I++ +E++
Sbjct: 89 VCFREGSDEIVGVNILDVASRSDKDNAQFNSAIFQAIYDTIEYVS 133
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 33.4 bits (77), Expect = 0.093
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 75 QVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTL 126
+VLG R + +F+ +GG++L ++ +++++ G + V A T+
Sbjct: 983 EVLG---RKQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTI 1032
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 32.9 bits (76), Expect = 0.11
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 75 QVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA--GHQVSVADFVSAQTL 126
++LG + +F+ GGNSL ++ + + A G + +AD + L
Sbjct: 535 ELLG---CEVGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRL 585
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 32.0 bits (73), Expect = 0.19
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 62 RLPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADF 120
+ ++ +LG +F+ +GG+ L ++ +L QV+
Sbjct: 9 KAGSETIIAAAFSSLLG---CDVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQV 65
Query: 121 VSAQTLGR 128
+ A T+ +
Sbjct: 66 MVASTVAK 73
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 32.1 bits (74), Expect = 0.23
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 75 QVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTL 126
QVL V +F+ +GG+SL ++ ++ + + + T+
Sbjct: 21 QVLN---VPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTI 70
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 28.8 bits (65), Expect = 0.45
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 112 GHQVS------VADFVSAQTLGRY---------TGSLLLSLQRFWMTDLGISRLIDGRKI 156
GH V V+ ++ +L +Y +G LL L + LG++ D +
Sbjct: 1 GHMVHEWSVQQVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALV 60
>2cg5_B Fatty acid synthase; transferase-hydrolase complex,
transferase/hydrolase (comple fatty acid biosynthesis,
phosphopantetheine transferase; HET: COA; 2.7A {Homo
sapiens} PDB: 2png_A
Length = 91
Score = 28.9 bits (64), Expect = 0.52
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 59 GSDRLPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKL-REAGHQVSV 117
G+ + L + V +LG + V+ + +G ++L S+ L RE +SV
Sbjct: 1 GTRDRDSQRDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSV 60
Query: 118 AD 119
+
Sbjct: 61 RE 62
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 28.9 bits (64), Expect = 0.74
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 43 IRADNSTAVQIDYTGIGSDRLPVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSI 102
+ A N +A + SD + + + V G + S+++ S I G ++
Sbjct: 14 VTAVNISATSLTLIWKVSDNESSSNYTYK--IHVAGETDSSNLNVSEPRAVIPGLRSSTF 71
Query: 103 YTITKLREAGHQVSVADFVSAQTLG 127
Y IT G F+ T
Sbjct: 72 YNITVCPVLGDIEGTPGFLQVHTPP 96
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein;
four-helix bundle, modular enzyme, domain, flexible
region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB:
2gdw_A 2gdx_A 2gdy_A 2k2q_A
Length = 91
Score = 28.3 bits (64), Expect = 0.80
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 90 NFYQIGGNSLNSIYTITKLREA-GHQVSVADFVSAQTL 126
NF+QIGG+SL ++ ++ ++ + + T+
Sbjct: 37 NFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTI 74
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding,
acyl carrier protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 27.3 bits (60), Expect = 2.6
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 85 VSQSVNFYQIGGNSLNSIYTITKLRE--AGHQVSVADFVSAQTLGRYTGSLLLSL 137
V S +F++ G S++ + + +++E G ++ D A T G + L+ L
Sbjct: 44 VEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKL 98
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 26.3 bits (58), Expect = 3.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 130 TGSLLLSLQRFWMTDLGISRLIDGRKICLLEI 161
TG LL + + +G++ D R+ EI
Sbjct: 35 TGRALLRITDSSLQRMGVTDNRD-REAIWREI 65
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane,
metal-binding, phorbol-ester binding; 2.90A {Homo
sapiens}
Length = 81
Score = 25.8 bits (57), Expect = 5.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 117 VADFVSAQTLGRY---------TGSLLLSLQRFWMTDLGISRLIDGRKI 156
VA ++ +L Y GS LL L+R + DLG++++ ++I
Sbjct: 15 VAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRI 63
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 26.0 bits (57), Expect = 5.3
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 64 PVAKVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA 111
+ V + G ++ ++ NF +G +SL+S+ ++ RE
Sbjct: 11 EKLDAVMRVVSEESGIAL-EELTDDSNFADMGIDSLSSMVIGSRFRED 57
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 25.8 bits (57), Expect = 5.6
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 117 VADFVSAQTLGRY---------TGSLLLSLQRFWMTDLGISRLIDGRKI 156
V D++ + LG + G+ L +L + +LG++R+ I
Sbjct: 10 VGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENI 58
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein
structure initiative; 2.20A
{Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Length = 157
Score = 26.6 bits (58), Expect = 6.6
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 101 SIYTITKLREAGHQVSVADFVSAQTLGRYTGSLLLSLQRFWMTDLGISRLIDGR 154
+IYT KL++ G +V+V +A L + + + I+ L +G
Sbjct: 25 AIYTSHKLKKKGFRVTVTANPAALRLVQVADPEGIYTDEMVDLESCINELAEGD 78
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas
gingivalis}
Length = 303
Score = 27.0 bits (59), Expect = 6.8
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 25/120 (20%)
Query: 158 LLEIGD----IIDLILSNKAHPGISLSNQYECVFLTHAHKQDLFQIITDSFYEKADLERW 213
L IG I+D + + G L +I SF ++ +
Sbjct: 25 LDGIGPGGDTIMDYSVYDAIRAGFG----------------RLVFVIRHSFEKEFREK-- 66
Query: 214 IIPELKRDCYVELLEQIWEPLVAARLSFIVKSREVGEGGKILGACLNFDALDEPEVAITS 273
I+ + + VEL+ Q + L + + G +L DA+ EP I +
Sbjct: 67 ILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGR---DAIREPFAVINA 123
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.5 bits (61), Expect = 6.8
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 33 AQDRPRWRRLIRADNSTAVQIDYTGIGSDRLPVAKVLFDTVVQVLGSSVRSHVSQSVNFY 92
+Q P + A+ A K L V +LG + ++
Sbjct: 2100 SQPHPVLSSFVLAEKKAA--------APRDGSSQKDLVKAVAHILGIRDVASINPDSTLV 2151
Query: 93 QIGGNSLNSI 102
+G +SL +
Sbjct: 2152 DLGLDSLMGV 2161
>2ayx_A Sensor kinase protein RCSC; two independent structural domains,
transferase; NMR {Escherichia coli} SCOP: c.23.1.1
c.23.1.6 PDB: 2ayz_A 2ayy_A
Length = 254
Score = 26.6 bits (59), Expect = 8.3
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 40 RRLIRADNSTAVQI-----DYTGIGSDRLPVAKVLFDTVVQVLGSSVR 82
R + N++ Q +GI + + V+ +
Sbjct: 13 RCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSK 60
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer,
SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 25.7 bits (56), Expect = 9.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 130 TGSLLLSLQRFWMTDLGISRLIDGRKICLLEI 161
TG LL + + +G++ D R+ EI
Sbjct: 55 TGRALLRITDSSLQRMGVTDNRD-REAIWREI 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.400
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,400,741
Number of extensions: 261394
Number of successful extensions: 697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 30
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)