RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14287
         (290 letters)



>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 76

 Score = 29.4 bits (66), Expect = 0.11
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 67  KVLFDTVVQVLGSSVRSHVSQSVNFYQIGGNSLNSIYTITKLREA-GHQVSVADF 120
           + L   V  +LG    + ++   +   +G +SL  +     L       + + + 
Sbjct: 7   RDLVKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREV 61


>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic
          dehydrogenases YnfI {Salmonella typhimurium [TaxId:
          90371]}
          Length = 207

 Score = 27.3 bits (60), Expect = 2.0
 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 22 QQEEGEEWTQTAQDRPRWRRLIRADNSTAVQIDYTG--IGSDRLPV 65
            +   +W   A+       + +  +  ++   +    IG   LP 
Sbjct: 42 NDDWQAQWPLDAEALAPVAAMFKTHSEESLPQAWQRLFIGPYALPS 87


>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
           of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 25.0 bits (54), Expect = 3.6
 Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 9/50 (18%)

Query: 117 VADFVSAQTLGRY---------TGSLLLSLQRFWMTDLGISRLIDGRKIC 157
           VA ++                  G  LL L    +  L +  L     I 
Sbjct: 12  VATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELIL 61


>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3
           (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
          Length = 64

 Score = 24.4 bits (53), Expect = 4.9
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 9/50 (18%)

Query: 117 VADFVSAQTLGRY---------TGSLLLSLQRFWMTDLGISRLIDGRKIC 157
           V D++ +  LG +          G+ L +L +    +LG++R+     I 
Sbjct: 9   VGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIE 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,054,243
Number of extensions: 47723
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 6
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)