BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14289
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28159|SUH_DROME Suppressor of hairless protein OS=Drosophila melanogaster GN=Su(H)
PE=1 SV=1
Length = 594
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/216 (86%), Positives = 206/216 (95%), Gaps = 1/216 (0%)
Query: 79 DDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 138
++++LTR+AME+Y+R+R+DMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G GWR R E+
Sbjct: 101 EEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGSGWRRRYEE 160
Query: 139 LLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKM 198
+L++GE EQ AQLCAFIGIG+SDQDMQQLDLN GKQYCAAKTL+ISDSDKRKHFMLSVKM
Sbjct: 161 MLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLN-GKQYCAAKTLFISDSDKRKHFMLSVKM 219
Query: 199 FYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHV 258
FYG+GHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGT VALFNRLRSQTVSTRYLHV
Sbjct: 220 FYGNGHDIGVFNSKRIKVISKPSKKKQSLKNADLCIASGTNVALFNRLRSQTVSTRYLHV 279
Query: 259 ENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
ENG+FHASSTQWGAFTIHLLDD+ESESEEF VRD +
Sbjct: 280 ENGHFHASSTQWGAFTIHLLDDNESESEEFQVRDGY 315
>sp|Q5RFK6|SUH_PONAB Recombining binding protein suppressor of hairless OS=Pongo abelii
GN=RBPJ PE=2 SV=1
Length = 486
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/227 (76%), Positives = 193/227 (85%), Gaps = 1/227 (0%)
Query: 68 GWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL 127
W+ R +RLT+EAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL
Sbjct: 2 AWIKRKFGERPPPKRLTKEAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYL 61
Query: 128 YGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSD 187
G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L GK YC AKTLYISDSD
Sbjct: 62 MGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSD 120
Query: 188 KRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 247
KRKHFMLSVKMFYG+ DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR
Sbjct: 121 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 180
Query: 248 SQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
SQTVSTRYLHVE GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 181 SQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 227
>sp|Q06330|SUH_HUMAN Recombining binding protein suppressor of hairless OS=Homo sapiens
GN=RBPJ PE=1 SV=3
Length = 500
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/224 (78%), Positives = 192/224 (85%), Gaps = 1/224 (0%)
Query: 71 PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 130
P R +RLTREAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL G
Sbjct: 19 PGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGS 78
Query: 131 GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRK 190
GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L GK YC AKTLYISDSDKRK
Sbjct: 79 GWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRK 137
Query: 191 HFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 250
HFMLSVKMFYG+ DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT
Sbjct: 138 HFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 197
Query: 251 VSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
VSTRYLHVE GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 198 VSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 241
>sp|P31266|SUH_MOUSE Recombining binding protein suppressor of hairless OS=Mus musculus
GN=Rbpj PE=1 SV=1
Length = 526
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/218 (79%), Positives = 191/218 (87%), Gaps = 1/218 (0%)
Query: 77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
R +RLTREAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 51 RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 110
Query: 137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L GK YC AKTLYISDSDKRKHFMLSV
Sbjct: 111 EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 169
Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
KMFYG+ DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct: 170 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 229
Query: 257 HVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
HVE GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 230 HVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 267
>sp|Q3SZ41|SUH_BOVIN Recombining binding protein suppressor of hairless OS=Bos taurus
GN=RBPJ PE=2 SV=1
Length = 487
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/218 (79%), Positives = 191/218 (87%), Gaps = 1/218 (0%)
Query: 77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
R +RLTREAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 12 RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 71
Query: 137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L GK YC AKTLYISDSDKRKHFMLSV
Sbjct: 72 EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 130
Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
KMFYG+ DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct: 131 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 190
Query: 257 HVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
HVE GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 191 HVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 228
>sp|Q91880|SUH_XENLA Suppressor of hairless protein homolog OS=Xenopus laevis GN=rbpj
PE=1 SV=1
Length = 501
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/218 (78%), Positives = 191/218 (87%), Gaps = 1/218 (0%)
Query: 77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
R +RLTREAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 26 RPQPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 85
Query: 137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
EQ+ R+G SEQ +Q CAFIGIGNS+Q+MQQL+L GK YC AKTLYISDSDKRKHFMLSV
Sbjct: 86 EQMERDGCSEQESQPCAFIGIGNSEQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 144
Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
KMFYG+ DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct: 145 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 204
Query: 257 HVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
HVE GNFHASS QWGAF IHLLDD+ESE EEF+VRD +
Sbjct: 205 HVEGGNFHASSQQWGAFYIHLLDDEESEGEEFTVRDGY 242
>sp|O02019|SUH_HALRO Suppressor of hairless homolog OS=Halocynthia roretzi GN=RBP-JK
PE=2 SV=1
Length = 518
Score = 352 bits (902), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 167/236 (70%), Positives = 195/236 (82%), Gaps = 1/236 (0%)
Query: 59 PSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRF 118
P+QN P S+ QRLTREAM +YLR+R+D ++ILHAKVAQKSYGNEKRF
Sbjct: 38 PNQNGGTSTSSKPRSVFENRPPQRLTREAMSKYLRERNDQTLIILHAKVAQKSYGNEKRF 97
Query: 119 FCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAA 178
CPPPC+YL GW+ +Q+ L ++ +A Q+ AFIGIG+SDQ+MQQL+L+ GK +C A
Sbjct: 98 LCPPPCLYLMESGWKQKQQILEEADQAPEAGQVHAFIGIGSSDQEMQQLNLD-GKNFCTA 156
Query: 179 KTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGT 238
KTLYISD+DKRKHFML VKMF+GSG ++G F S+RIKVISKPSKKKQSLKNADLCIASGT
Sbjct: 157 KTLYISDTDKRKHFMLCVKMFFGSGLEVGAFNSRRIKVISKPSKKKQSLKNADLCIASGT 216
Query: 239 KVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
KVALFNRLRSQTVSTRYLHVENGNFHASS QWG+F IHLLDDDESESEEF+VRD +
Sbjct: 217 KVALFNRLRSQTVSTRYLHVENGNFHASSIQWGSFAIHLLDDDESESEEFTVRDGY 272
>sp|O76808|SUH_CIOIN Suppressor of hairless homolog OS=Ciona intestinalis GN=Su(H) PE=2
SV=1
Length = 554
Score = 333 bits (853), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 189/223 (84%), Gaps = 2/223 (0%)
Query: 73 SLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGW 132
SL + ++LTR+AM RYL+D +D +++LHAKVAQKSYGNEKRFFCPPPC+YL G GW
Sbjct: 46 SLREKYPPKKLTRDAMRRYLKDPNDQTLIVLHAKVAQKSYGNEKRFFCPPPCMYLLGNGW 105
Query: 133 RLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHF 192
+ +Q+ L E S +A QL AFIGIG+S+Q+MQQL L+ GK +C AKTLYISD+DKRKHF
Sbjct: 106 KRKQQILEEEEGSSEAGQLHAFIGIGSSEQEMQQLHLD-GKNFCTAKTLYISDTDKRKHF 164
Query: 193 MLSVKMFYGSG-HDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 251
ML+VKMF+G G D+G F+SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV
Sbjct: 165 MLNVKMFFGGGGADVGQFSSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 224
Query: 252 STRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
STRYLHVE GNFHASS QWG F IHLLDDDESESEEFSV D +
Sbjct: 225 STRYLHVEKGNFHASSIQWGCFAIHLLDDDESESEEFSVVDGY 267
>sp|O08674|RBPJL_MOUSE Recombining binding protein suppressor of hairless-like protein
OS=Mus musculus GN=Rbpjl PE=1 SV=1
Length = 515
Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 152/212 (71%), Gaps = 10/212 (4%)
Query: 83 LTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLR--QEQLL 140
+ RE + L+ R + + ILHAKVAQKSYGNEKRFFCPPPC+YL G GWR++ Q+Q L
Sbjct: 50 ILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPMQDQAL 109
Query: 141 REGESEQAAQLCAFIGI---GNSDQDMQQLDLN---NGKQYCAAKTLYISDSDKRKHFML 194
+ E+ +C ++G+ S + Q+L+ + +++ AKTLYISD+DKRKHF L
Sbjct: 110 QSAET--GPTVCGYMGLDGASGSAPETQKLNFEEQPDSREFGCAKTLYISDADKRKHFRL 167
Query: 195 SVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTR 254
+++ G ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVSTR
Sbjct: 168 VLRLVLRGGQELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTR 227
Query: 255 YLHVENGNFHASSTQWGAFTIHLLDDDESESE 286
YL VE+G F AS+ QW AFT+HL D S+ +
Sbjct: 228 YLSVEDGAFVASARQWAAFTLHLADGHCSQGD 259
>sp|Q9UBG7|RBPJL_HUMAN Recombining binding protein suppressor of hairless-like protein
OS=Homo sapiens GN=RBPJL PE=1 SV=3
Length = 517
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 151/218 (69%), Gaps = 7/218 (3%)
Query: 83 LTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE 142
+ R + R L+ + + + ILHAKVAQKSYGNEKRFFCPPPC+YL G GWR++ Q
Sbjct: 52 ILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAH 111
Query: 143 GESEQAAQLCAFIGI---GNSDQDMQQLDLN---NGKQYCAAKTLYISDSDKRKHFMLSV 196
E +C ++G+ S + Q+L+ + +++ AKTLYISD+DKRKHF L +
Sbjct: 112 QAGETGPTVCGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVL 171
Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
++ G ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVSTRYL
Sbjct: 172 RLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYL 231
Query: 257 HVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
VE+G F AS+ QW AFT+HL D ++ +F R+ +
Sbjct: 232 SVEDGAFVASARQWAAFTLHLADGHSAQG-DFPPREGY 268
>sp|O74954|CBF11_SCHPO Transcription factor cbf11 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cbf11 PE=1 SV=1
Length = 613
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 17/185 (9%)
Query: 104 HAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNS-DQ 162
H+ V QKSYG+EKR+ CPPP +Y+ G + + E I I N Q
Sbjct: 184 HSSVIQKSYGSEKRYLCPPPMVYINGNYSSIFNQSFRTE------------ISIMNDFGQ 231
Query: 163 DMQQLDLNNGKQYCAA-KTLYISD--SDKRKHFMLSVKMFYGSGHDI-GVFTSKRIKVIS 218
Q + Q C ++L+IS + K K+ LS+ MF + + + I ++S
Sbjct: 232 CSQPISEEYTGQGCMIFRSLHISSLVAAKSKNLRLSLDMFSNVNNQLLSHLVTSSISIVS 291
Query: 219 KPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLL 278
KPSKK LK +++ + SG+ V+L+NR+ SQTV T+Y +E G F +W I+LL
Sbjct: 292 KPSKKGSKLKISNITLRSGSVVSLYNRINSQTVRTKYTSIEAGQFCLRGDRWVPLRINLL 351
Query: 279 DDDES 283
DE+
Sbjct: 352 LPDEN 356
>sp|O74412|CBF12_SCHPO Transcription factor cbf12 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cbf12 PE=2 SV=1
Length = 963
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 47/249 (18%)
Query: 45 PSKLTRYFAMIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMV--IVI 102
P L + VC+P++N +P ++ Q +T E +Y+ + +
Sbjct: 425 PKSLVNRPSSAVCEPARNDS-----IPMMVY----SQPVTIEQRIQYVLSNCHCLSAFYL 475
Query: 103 LHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREG----ESEQAAQLCAFIGIG 158
+ QKSYG E+R+ CPP +YL G W L+ E + + I
Sbjct: 476 CMPSLCQKSYGTERRYLCPPIVLYLLGTTWLNNVTDNLKISAQTLEDKDNPKFAKNIFYY 535
Query: 159 NSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHF---------MLSVKMFYGSGHDIGVF 209
N+D + + + A T +++ ++ +F +L + G G + G
Sbjct: 536 NADGALISPETD-----IAKSTYQLTNYNENTNFDSFPVWGNALLKTIYYTGQGKNDGFG 590
Query: 210 TSK------------------RIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 251
S R+ VISKPS+K+ +K +D+ I G V LFNR R+Q
Sbjct: 591 RSTFLQLSVQSKTKYFKLENLRLGVISKPSQKRALMKVSDMSIRHGDCVCLFNRYRAQHN 650
Query: 252 STRYLHVEN 260
+ +L N
Sbjct: 651 NALFLGTSN 659
>sp|Q9Y1T5|SUH_DROSI Protein suppressor of hairless (Fragment) OS=Drosophila simulans
GN=Su(H) PE=3 SV=1
Length = 102
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 28/28 (100%)
Query: 79 DDQRLTREAMERYLRDRSDMVIVILHAK 106
++++LTR+AME+Y+R+R+DMVIVILHAK
Sbjct: 75 EEKKLTRDAMEKYMRERNDMVIVILHAK 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,600,263
Number of Sequences: 539616
Number of extensions: 4392752
Number of successful extensions: 9440
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9410
Number of HSP's gapped (non-prelim): 19
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)