Query psy14289
Match_columns 297
No_of_seqs 97 out of 99
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 16:02:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3743|consensus 100.0 5.7E-90 1.2E-94 680.0 18.1 279 16-297 79-382 (622)
2 PF09271 LAG1-DNAbind: LAG1, D 100.0 1.6E-62 3.6E-67 418.0 10.5 133 99-231 1-140 (140)
3 PF09270 BTD: Beta-trefoil DNA 100.0 7.8E-30 1.7E-34 221.9 7.3 66 232-297 1-72 (158)
4 PF10578 SVS_QK: Seminal vesic 63.4 2.5 5.5E-05 23.3 0.1 10 109-118 3-12 (12)
5 cd01243 PH_MRCK MRCK (myotonic 39.4 87 0.0019 27.2 5.7 66 218-285 11-108 (122)
6 cd00257 Fascin Fascin-like dom 33.3 58 0.0012 25.8 3.5 38 237-280 43-83 (119)
7 PF07629 DUF1590: Protein of u 20.8 47 0.001 22.6 0.7 11 119-129 6-16 (32)
8 PRK15267 subtilase cytotoxin s 19.9 78 0.0017 28.1 2.1 40 80-120 15-54 (141)
9 smart00603 LCCL LCCL domain. 18.6 36 0.00079 27.2 -0.2 21 111-132 15-35 (85)
10 PF08248 Tryp_FSAP: Tryptophyl 18.5 57 0.0012 18.0 0.6 8 115-122 1-8 (12)
No 1
>KOG3743|consensus
Probab=100.00 E-value=5.7e-90 Score=680.01 Aligned_cols=279 Identities=53% Similarity=0.809 Sum_probs=247.4
Q ss_pred cccceeeccccccccccccCCCccceeeeccccccceeeeeeCCCCccccc-------------------cccccccCCC
Q psy14289 16 LSDVILTIKPWVGRNQTHKSAPRKHIHYLPSKLTRYFAMIVCDPSQNKVHY-------------------EGWVPHSLHY 76 (297)
Q Consensus 16 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------------------~~~~~~~~~~ 76 (297)
..++....+.+.+++|+..++++.+++++..++.+- ++--.+++..+++- .+.+| ...
T Consensus 79 e~~~~~ps~~td~~~q~qq~~t~~dp~~~~~n~~P~-ss~~~~~q~~~~~d~~~~~~~~r~~~q~~~~a~n~slp--g~~ 155 (622)
T KOG3743|consen 79 EKSVEFPSVVTDEQSQPQQAPTSNDPDELAPNSIPP-SSPQGFNQNSKTFDEDSSVLQIRRAIQLQLQALNNSLP--GIA 155 (622)
T ss_pred cceeeccccCcCcccchhcCCccCCchhccCCCCCC-CccccccccccccCccchhhhcchhHHHHHHHhhCcCc--ccc
Confidence 456778888999999999999999999998887541 00000111111100 00111 112
Q ss_pred CCCchhhhHHHHHHHHhcCCCeEEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhhccccccceeEEEEe
Q psy14289 77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIG 156 (297)
Q Consensus 77 ~~~~~~l~r~~mr~yL~~~~e~tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~g~~~~~~~~~~~ig 156 (297)
..++..+.|..|.++.+.+|+++|.|+||||||||||||||||||||||||+|+||+....|+.++++.|++.++|+|||
T Consensus 156 ~~q~~ti~r~~~~~~~k~~~l~tv~i~hasVaQKSYGnEKRylCPPpcvYL~G~gw~~~~~q~~~~~~~e~g~~i~~~~g 235 (622)
T KOG3743|consen 156 NLQEDTIHRIILTRSGKESCLVTVSILHASVAQKSYGNEKRYLCPPPCVYLNGSGWRSIKNQSLQDGAGETGAEISAYIG 235 (622)
T ss_pred ccCcchhhhhHHHHhcCcceeEEEEEeehhhhhhhccccccccCCCCEEEEeccccccccchhhcchhccccceeeeeec
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccc-Ccc---ceEeeeeeeecCCCCCcceEEEEEEecCCCceeeEeecCCeEEEecCCcccccccccce
Q psy14289 157 IGNSDQDMQQLDLN-NGK---QYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADL 232 (297)
Q Consensus 157 ig~~~qe~q~l~l~-~~k---~~~~aKtL~ISDsDKrK~F~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~dl 232 (297)
||++.+++|+++++ .|. +||+||+|||||+||||||+|++++++++|.++|.|.|++||||||||||||++||+||
T Consensus 236 ig~ssqe~qqln~~~qgd~~~~~~~akTlyisd~dK~k~f~ls~~~~~~~g~~~g~f~s~~ikViSKPSkKkqslKnsDl 315 (622)
T KOG3743|consen 236 IGSSSQEIQQLNFNTQGDSRFGYCLAKTLYISDSDKNKHFSLSMFLFYGNGLEIGLFTSSRIKVISKPSKKKQSLKNSDL 315 (622)
T ss_pred ccccchhhhhhcccCCCccccccceeeeEEEecCccccccceEEEEEecCcceeeeEEeeeceeecCcccccccccccce
Confidence 99999999999997 354 49999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCEEEEeeecCCcccceeeEEeeCCeeeeecCCcccEEEEEecCCC--CccCccccccceeeC
Q psy14289 233 CIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDE--SESEEFSVRDWFTSL 297 (297)
Q Consensus 233 CI~sGS~VALFNRlRSQTVSTRYL~Ve~g~F~Ass~~W~aF~I~Lvd~~~--~~~~~f~~rdgyi~~ 297 (297)
||.||++||||||||||||||||||||+|+|||++++|+||+|||+|+++ +++++|++|||||||
T Consensus 316 cI~sGs~VsLFNRlrSQtvsTrYl~vE~gqF~as~~~W~aftI~l~d~~e~g~~~~~f~~r~g~i~y 382 (622)
T KOG3743|consen 316 CIRSGSKVSLFNRLRSQTVSTRYLSVENGQFHASSTQWGAFTIHLLDDDENGSESCDFVVRDGYIKY 382 (622)
T ss_pred eeccCCEEeeehhhhhhhcceeEEEeecceeeccCCccccEEEEEecCcccccccCCCCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999 799999999999998
No 2
>PF09271 LAG1-DNAbind: LAG1, DNA binding; InterPro: IPR015351 This domain is found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. It adopts a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding []. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3IAG_C 3BRG_C 3NBN_A 2F8X_C 3V79_C.
Probab=100.00 E-value=1.6e-62 Score=418.01 Aligned_cols=133 Identities=72% Similarity=1.190 Sum_probs=100.4
Q ss_pred EEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhhcc--ccccceeEEEEecCCCcc---ccccccccCcc
Q psy14289 99 VIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGE--SEQAAQLCAFIGIGNSDQ---DMQQLDLNNGK 173 (297)
Q Consensus 99 tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~g~--~~~~~~~~~~igig~~~q---e~q~l~l~~~k 173 (297)
||+||||||||||||||||||||||||||+|++|+.+.+++...+. ++.+.++|+|||+|+.++ ++|++++++.+
T Consensus 1 Tv~i~hakVAQKSYG~EKRF~CPPP~v~L~G~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 80 (140)
T PF09271_consen 1 TVIILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWKIKQQQLQDNGICDSEQGSEPCAFIGIGSSSQSQSEMQQLNLDEQK 80 (140)
T ss_dssp EEEEEEESEEE-B-TT-----SS--EEEEESTHHHHHHHHHHHTT---STTTCSEEEEEECSTSSS-----EEE--TTTS
T ss_pred CEEEEEhhHhhhhhcccccccCCCCeEEEECCCcCccccccccccccccccCCcceEEEeeCCCCccchhhhhccccccc
Confidence 7999999999999999999999999999999999988888776555 677899999999999877 89999997778
Q ss_pred ceEee--eeeeecCCCCCcceEEEEEEecCCCceeeEeecCCeEEEecCCcccccccccc
Q psy14289 174 QYCAA--KTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNAD 231 (297)
Q Consensus 174 ~~~~a--KtL~ISDsDKrK~F~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~d 231 (297)
.||+| |+|||||+||||+|+|+|+||+++|+++|+|+|+|||||||||||||++||+|
T Consensus 81 ~~~~a~~K~LyISd~dKrK~f~L~~kl~~~~g~~igtF~Sk~IkVISKPSKKkqs~Kn~d 140 (140)
T PF09271_consen 81 DYGAAVFKTLYISDSDKRKHFELSVKLFYGNGREIGTFPSKPIKVISKPSKKKQSMKNTD 140 (140)
T ss_dssp SEEE---TT---BTT---SEEEEEEEEEETTTEEEEEEEECEEEEESS---S-S-CCCGC
T ss_pred hhheeeeeeeEeccccccceeEEEEEEEcCCCcEEEEEcCCeeeEEeCCChhhhhhhcCC
Confidence 99988 99999999999999999999999999999999999999999999999999997
No 3
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=99.96 E-value=7.8e-30 Score=221.94 Aligned_cols=66 Identities=67% Similarity=1.060 Sum_probs=54.9
Q ss_pred eeeecCCEEEEeeecCCcccceeeEEeeCC------eeeeecCCcccEEEEEecCCCCccCccccccceeeC
Q psy14289 232 LCIASGTKVALFNRLRSQTVSTRYLHVENG------NFHASSTQWGAFTIHLLDDDESESEEFSVRDWFTSL 297 (297)
Q Consensus 232 lCI~sGS~VALFNRlRSQTVSTRYL~Ve~g------~F~Ass~~W~aF~I~Lvd~~~~~~~~f~~rdgyi~~ 297 (297)
|||.||++|||||||||||||||||+||++ +|+|++++|+||+|||||+..++.++|+++||||+|
T Consensus 1 LCI~~Gs~VsLFNRirSQTVsTrYL~v~~~~~~~g~~f~as~~~W~~F~I~lvd~~~~~~~~~~~~~~~I~Y 72 (158)
T PF09270_consen 1 LCISSGSTVSLFNRIRSQTVSTRYLHVENGASGHGPRFVASSTQWDPFTIHLVDDPRSNAEPFDVREGYIHY 72 (158)
T ss_dssp CB-BTTCEEEEEEECTTECCCEEEEEEETT------EEEEESS----EEEEEE-TT--SSSCEEEE-SB-BT
T ss_pred CeecCCCEEEeEcccccccccceeeecCCCcccceeeeeeccCcccceEEEEecCCccccCCCCCCCCceec
Confidence 799999999999999999999999999999 999999999999999999999999999999999998
No 4
>PF10578 SVS_QK: Seminal vesicle protein repeat; InterPro: IPR018942 The rat seminal vesicle contains six major androgen-dependent secretory proteins referred to as SVS I-VI. The SVS I-III proteins appear to be components of the rat copulatory plug, with the SVS II protein being the major component []. This entry represents a repeat that is found in seminal vesical proteins.
Probab=63.39 E-value=2.5 Score=23.25 Aligned_cols=10 Identities=60% Similarity=0.817 Sum_probs=8.4
Q ss_pred hhhcCCcccc
Q psy14289 109 QKSYGNEKRF 118 (297)
Q Consensus 109 QKSYGnEKRF 118 (297)
+||||.||-|
T Consensus 3 ~ksfgQ~Ks~ 12 (12)
T PF10578_consen 3 QKSFGQEKSQ 12 (12)
T ss_pred ccccchhccC
Confidence 6999999964
No 5
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=39.41 E-value=87 Score=27.25 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=41.7
Q ss_pred ecCCcccccccccceeeecCCEEEEee----ecCCcccceeeE--EeeCCeeee------------------------e-
Q psy14289 218 SKPSKKKQSLKNADLCIASGTKVALFN----RLRSQTVSTRYL--HVENGNFHA------------------------S- 266 (297)
Q Consensus 218 SKPSKKkqs~Kn~dlCI~sGS~VALFN----RlRSQTVSTRYL--~Ve~g~F~A------------------------s- 266 (297)
-||.++|+-=.+ -.++.++.++.||| | -+|....=.| ...++.|++ +
T Consensus 11 P~~~~~krGW~r-~~vVv~~~Kl~lYd~e~~k-~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~ 88 (122)
T cd01243 11 PKPGGVKKGWQR-ALVVVCDFKLFLYDIAEDR-ASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQ 88 (122)
T ss_pred cCCCCcccCceE-EEEEEeCCEEEEEeCCccc-cCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEec
Confidence 456554442222 38899999999999 5 4444444344 443454443 2
Q ss_pred -cCCcccEEEEEecCCCCcc
Q psy14289 267 -STQWGAFTIHLLDDDESES 285 (297)
Q Consensus 267 -s~~W~aF~I~Lvd~~~~~~ 285 (297)
+..|...+++++-++++|-
T Consensus 89 ~~~~~~~~~~~~lA~s~~eK 108 (122)
T cd01243 89 ISASSSKCSTLMLADTEEEK 108 (122)
T ss_pred ccCCCCccEEEEEeCCchHH
Confidence 3678889999988887754
No 6
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=33.30 E-value=58 Score=25.83 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=28.0
Q ss_pred CCEEEEeeecCCcccceeeEEeeC-Ceeeeec--CCcccEEEEEecC
Q psy14289 237 GTKVALFNRLRSQTVSTRYLHVEN-GNFHASS--TQWGAFTIHLLDD 280 (297)
Q Consensus 237 GS~VALFNRlRSQTVSTRYL~Ve~-g~F~Ass--~~W~aF~I~Lvd~ 280 (297)
+.+|+| || ..-|||++++ |.+.|+. ..|..|+|...++
T Consensus 43 ~g~v~L----rs--~~G~yls~~~~g~l~~~~~~~~~e~F~~e~~~~ 83 (119)
T cd00257 43 TGKYAL----RS--HDGKYLSADSDGGVQLEGHPNADCRFTLEFHGD 83 (119)
T ss_pred CCeEEE----EE--CCCcEEEEECCCCEEecCCCCCCcEEEEEECCC
Confidence 555644 54 6899999974 6777776 7899999877653
No 7
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=20.81 E-value=47 Score=22.64 Aligned_cols=11 Identities=55% Similarity=0.969 Sum_probs=8.8
Q ss_pred cCCCcEEEEec
Q psy14289 119 FCPPPCIYLYG 129 (297)
Q Consensus 119 fCPPP~VyL~G 129 (297)
-||||-|.|..
T Consensus 6 ~~pppeislna 16 (32)
T PF07629_consen 6 DCPPPEISLNA 16 (32)
T ss_pred CCCCCcceecc
Confidence 49999998754
No 8
>PRK15267 subtilase cytotoxin subunit B-like protein; Provisional
Probab=19.94 E-value=78 Score=28.14 Aligned_cols=40 Identities=33% Similarity=0.355 Sum_probs=28.4
Q ss_pred chhhhHHHHHHHHhcCCCeEEEEEechhhhhhcCCcccccC
Q psy14289 80 DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFC 120 (297)
Q Consensus 80 ~~~l~r~~mr~yL~~~~e~tV~IlHakVAQKSYGnEKRFfC 120 (297)
...++-.+|..|-.-..+..|-=+|.-|. .|=|.|++|||
T Consensus 15 ~ssv~~a~m~dy~~y~S~vvIn~f~~G~~-~s~gk~~~yFC 54 (141)
T PRK15267 15 ISSVCYAAMADYDTYVSNVQINNLSYGVY-TSGGKETQFFC 54 (141)
T ss_pred HHHHHHHHHhhhhhhccceEeeeeeeEEE-ecCCcccceEE
Confidence 34567788998886666766666665442 35688999999
No 9
>smart00603 LCCL LCCL domain.
Probab=18.56 E-value=36 Score=27.22 Aligned_cols=21 Identities=19% Similarity=0.593 Sum_probs=14.2
Q ss_pred hcCCcccccCCCcEEEEecCCc
Q psy14289 111 SYGNEKRFFCPPPCIYLYGEGW 132 (297)
Q Consensus 111 SYGnEKRFfCPPP~VyL~G~~W 132 (297)
..++. |+.|||-|....|.-|
T Consensus 15 ~~~~~-~v~CP~~C~~~~~~V~ 35 (85)
T smart00603 15 PVTDN-RVLCPAGCLLEKAKVF 35 (85)
T ss_pred CCCce-eEECCCCcccCCCeEE
Confidence 55667 9999999964333333
No 10
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=18.52 E-value=57 Score=18.04 Aligned_cols=8 Identities=63% Similarity=1.190 Sum_probs=5.5
Q ss_pred cccccCCC
Q psy14289 115 EKRFFCPP 122 (297)
Q Consensus 115 EKRFfCPP 122 (297)
||.|.-||
T Consensus 1 ekpfw~pp 8 (12)
T PF08248_consen 1 EKPFWPPP 8 (12)
T ss_pred CCccCCCC
Confidence 67877555
Done!