Query psy14289
Match_columns 297
No_of_seqs 97 out of 99
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 16:02:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iag_C Recombining binding pro 100.0 4E-101 1E-105 741.5 20.3 217 80-297 2-218 (422)
2 3brd_A LIN-12 and GLP-1 phenot 100.0 1.4E-96 5E-101 719.1 18.1 224 74-297 3-265 (477)
3 2jrw_A Cyclic extended PEP.1; 37.7 11 0.00036 23.6 0.8 17 110-126 9-25 (26)
4 1s03_H 30S ribosomal protein S 24.6 50 0.0017 27.1 3.0 28 193-224 57-84 (129)
5 1sei_A Ribosomal protein S8; p 24.3 54 0.0019 26.9 3.2 28 193-224 58-85 (130)
6 3qwm_A Iqsec1, IQ motif and SE 23.6 69 0.0023 26.9 3.7 80 175-283 14-93 (140)
7 2yug_A Protein FRG1; spliceoso 15.7 84 0.0029 26.0 2.6 36 237-278 111-150 (155)
8 1xjv_A Protection of telomeres 13.7 2.5E+02 0.0086 25.0 5.3 56 172-258 35-91 (294)
9 1y74_B MLIN-2/CASK, peripheral 9.5 68 0.0023 21.8 0.1 30 84-113 20-49 (50)
10 2vqe_H 30S ribosomal protein S 8.3 1.2E+02 0.0041 25.1 1.2 13 212-224 81-93 (138)
No 1
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=100.00 E-value=4.1e-101 Score=741.51 Aligned_cols=217 Identities=80% Similarity=1.252 Sum_probs=214.1
Q ss_pred chhhhHHHHHHHHhcCCCeEEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhhccccccceeEEEEecCC
Q psy14289 80 DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGN 159 (297)
Q Consensus 80 ~~~l~r~~mr~yL~~~~e~tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~g~~~~~~~~~~~igig~ 159 (297)
+++|||++|++||++++|+||+||||||||||||||||||||||||||+|++|+.++++++++++++.+.++|+|||||+
T Consensus 2 ~~~l~r~~~~~yl~~~~e~tv~ilHakVAQKSYGnEKRFfCPPP~VyL~G~gW~~~~~~~~~~~~~~~~~~~~~~igi~~ 81 (422)
T 3iag_C 2 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN 81 (422)
T ss_dssp CCCCCHHHHHHHHHHCCCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTCCHHHHSEEEEEEESS
T ss_pred cccccHHHHHHHHhCcCceEEEEEehhhhhhccccccccCCCCCEEEEeCCCccccchhhcccccccCCCceEEEEecCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCccceEeeeeeeecCCCCCcceEEEEEEecCCCceeeEeecCCeEEEecCCcccccccccceeeecCCE
Q psy14289 160 SDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTK 239 (297)
Q Consensus 160 ~~qe~q~l~l~~~k~~~~aKtL~ISDsDKrK~F~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~dlCI~sGS~ 239 (297)
++|++|+|++ ++++||+||+|||||+||||||+|+||||+++|++||+|+|||||||||||||||++||+|+||.||++
T Consensus 82 s~q~~q~l~~-~~~~~~~aK~L~ISDsDKrK~F~L~vk~~~~~g~~iG~F~Sk~IkVISKPSKKkqs~Kn~dlcI~sGs~ 160 (422)
T 3iag_C 82 SDQEMQQLNL-EGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTK 160 (422)
T ss_dssp CSSCCEECCC-TTSSEEECTTCCCBTTCCCSEECEEEEEEETTCCEEEEEECCCEEEESSCCCSCCCGGGGGGBCBTTEE
T ss_pred Cccccccccc-CCCceEEeccccccCCCcccCeEEEEEeccCCCceEEEeccccceEEECcchhhhcccCcceeecCCCE
Confidence 9999999999 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCcccceeeEEeeCCeeeeecCCcccEEEEEecCCCCccCccccccceeeC
Q psy14289 240 VALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFTSL 297 (297)
Q Consensus 240 VALFNRlRSQTVSTRYL~Ve~g~F~Ass~~W~aF~I~Lvd~~~~~~~~f~~rdgyi~~ 297 (297)
||||||||||||||||||||+|+|+|++++|+||+|||+|++++++++|++|||||||
T Consensus 161 VaLFNRlrSQTVsTrYL~ve~g~f~ass~~W~aF~I~lvd~~~~~~~~~~~~~g~I~Y 218 (422)
T 3iag_C 161 VALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHY 218 (422)
T ss_dssp EEEEECSSSCGGGCEEEEEETTEEEEESSCCCCEEEEECCTTCCSSSCCCCBCSBCBT
T ss_pred EEEeeccccceeeeeEEEeeCCceEeecCceecEEEEEecCcccccccCCcCCCeEEe
Confidence 9999999999999999999999999999999999999999999999999999999998
No 2
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=100.00 E-value=1.4e-96 Score=719.06 Aligned_cols=224 Identities=64% Similarity=1.051 Sum_probs=194.5
Q ss_pred CCCCCCchhhhHHHHHHHHhcC--CCeEEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhh---------
Q psy14289 74 LHYRNDDQRLTREAMERYLRDR--SDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE--------- 142 (297)
Q Consensus 74 ~~~~~~~~~l~r~~mr~yL~~~--~e~tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~--------- 142 (297)
++.+...+.||||+|++||+++ .+|+|+||||||||||||||||||||||||||+|++|+.+++++.+.
T Consensus 3 ~~~~~~~~~~~~e~~~~yl~~~~~~~~tv~ilHakVaQKSYG~EKRFfCPPP~vyL~G~~W~~~~~~~~~~~~~~~~s~~ 82 (477)
T 3brd_A 3 LGSGDSVQSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVAQLYKTLKASAQ 82 (477)
T ss_dssp ------CCCCCHHHHHHHHHSHHHHCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTTTC-----
T ss_pred CCCCCCcchhhHHHHHHHhhcCCCCceEEEEeecchhhhccccccccCCCCCEEEEecCCcccccccccccccccccccc
Confidence 4556667999999999999998 58999999999999999999999999999999999999987654321
Q ss_pred --------c-cccccceeEEEEecCCCccccccccccCcc--------------ceEeeeeeeecCCCCCcceEEEEEEe
Q psy14289 143 --------G-ESEQAAQLCAFIGIGNSDQDMQQLDLNNGK--------------QYCAAKTLYISDSDKRKHFMLSVKMF 199 (297)
Q Consensus 143 --------g-~~~~~~~~~~~igig~~~qe~q~l~l~~~k--------------~~~~aKtL~ISDsDKrK~F~L~vk~~ 199 (297)
. ..+..+++|+|||||++++|+|+|++++++ +||+||+|||||+||||||+|+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~gig~~~~e~q~L~~~~~kv~~~~~~~~d~~~~~~~~aKtLyISd~dKrK~F~L~~k~~ 162 (477)
T 3brd_A 83 KDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQDPNIYDYCAAKTLYISDSDKRKYFDLNAQFF 162 (477)
T ss_dssp ------------CCTTSEEEEEECSCTTSCCEECCC--------------CCEEEEEECCSCCCBTTCCCSEECCEEEEE
T ss_pred ccccccCccccccccceeEEEeccCCchhhhhhccccccccccccccccccccccceeeeeEeecCcccceeEEEEEEee
Confidence 1 234578899999999999999999997777 89999999999999999999999999
Q ss_pred cCCCceeeEeecCCeEEEecCCcccccccccc---eeeecCCEEEEeeecCCcccceeeEEeeCCeeeeecCCcccEEEE
Q psy14289 200 YGSGHDIGVFTSKRIKVISKPSKKKQSLKNAD---LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIH 276 (297)
Q Consensus 200 ~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~d---lCI~sGS~VALFNRlRSQTVSTRYL~Ve~g~F~Ass~~W~aF~I~ 276 (297)
+|+|++||+|+|||||||||||||||++||+| |||.||++||||||||||||||||||||+|+|+|++++|+||+||
T Consensus 163 ~g~g~~iG~F~Sk~IkVISKPSKKkqs~Kn~d~~~lcI~sGs~VaLFNRlRSQTVsTrYL~Ve~g~f~ass~~W~aF~I~ 242 (477)
T 3brd_A 163 YGCGMEIGGFVSQRIKVISKPSKKKQSMKNTDCKYLCIASGTKVALFNRLRSQTVSTRYLHVEGNAFHASSTKWGAFTIH 242 (477)
T ss_dssp ETTSCEEEEEECCCEEEESSCCCCC-----CCHHHHBCBTTSEEEEEECSTTCGGGCEEEEEETTEEEEESSCCCCEEEE
T ss_pred cCCCceEEEecCCceeEEeCcchhhhhcccccccceeecCCCEEEeeeeecccccceeEEEecCCceEeecCccccEEEE
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EecCCCC--ccCccccccceeeC
Q psy14289 277 LLDDDES--ESEEFSVRDWFTSL 297 (297)
Q Consensus 277 Lvd~~~~--~~~~f~~rdgyi~~ 297 (297)
|+|++++ ++++|++|||||||
T Consensus 243 Lvd~~~~~~e~~~f~~~dg~I~Y 265 (477)
T 3brd_A 243 LFDDERGLQETDNFAVRDGFVYY 265 (477)
T ss_dssp EECC----CCCSEEEEECSBCBT
T ss_pred EecCcccccccccccccCCeEEe
Confidence 9999988 89999999999998
No 3
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=37.68 E-value=11 Score=23.64 Aligned_cols=17 Identities=35% Similarity=0.903 Sum_probs=13.1
Q ss_pred hhcCCcccccCCCcEEE
Q psy14289 110 KSYGNEKRFFCPPPCIY 126 (297)
Q Consensus 110 KSYGnEKRFfCPPP~Vy 126 (297)
.-|=+|+.|--||||..
T Consensus 9 enyfserpyhppppc~~ 25 (26)
T 2jrw_A 9 ENYFSERPYHPPPPCXX 25 (26)
T ss_dssp SSSCCSSSCCSCSCC--
T ss_pred hhhcccCCCCCCCCCCC
Confidence 35789999999999964
No 4
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=24.60 E-value=50 Score=27.10 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=17.6
Q ss_pred EEEEEEecCCCceeeEeecCCeEEEecCCccc
Q psy14289 193 MLSVKMFYGSGHDIGVFTSKRIKVISKPSKKK 224 (297)
Q Consensus 193 ~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKk 224 (297)
.|.|.+-|.++..+ =.+|+.||||+++-
T Consensus 57 ~i~v~Lky~~~~~v----I~~i~rISkPg~R~ 84 (129)
T 1s03_H 57 ELELTLKYFQGKAV----VESIQRVSRPGLRI 84 (129)
T ss_dssp EEEEEECBSSSSBS----CSCEEECSBTTBCC
T ss_pred EEEEEEecCCCCcc----cccceEEcCCCcce
Confidence 44444445555432 35799999998764
No 5
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=24.30 E-value=54 Score=26.89 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=17.6
Q ss_pred EEEEEEecCCCceeeEeecCCeEEEecCCccc
Q psy14289 193 MLSVKMFYGSGHDIGVFTSKRIKVISKPSKKK 224 (297)
Q Consensus 193 ~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKk 224 (297)
.|.|.+-|.++..+ =.+|+.||||+++-
T Consensus 58 ~i~v~Lky~~~~~v----I~~i~rISkPg~R~ 85 (130)
T 1sei_A 58 ILRIFLKYGPNERV----ITGLKRISKPGLRV 85 (130)
T ss_dssp EEEEEECBSSSSBS----CCCEEECCBTTBCC
T ss_pred EEEEEEecCCCCcc----eeeeEEEcCCCCee
Confidence 45555555444322 24799999998764
No 6
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=23.61 E-value=69 Score=26.89 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=45.9
Q ss_pred eEeeeeeeecCCCCCcceEEEEEEecCCCceeeEeecCCeEEEecCCcccccccccceeeecCCEEEEeeecCCccccee
Q psy14289 175 YCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTR 254 (297)
Q Consensus 175 ~~~aKtL~ISDsDKrK~F~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~dlCI~sGS~VALFNRlRSQTVSTR 254 (297)
-|...-..|.|-.|...=.++=++| |.=..+=+|.||-+||++. -+-|++ .
T Consensus 14 vc~~~l~ev~d~~K~~~kg~qqR~~---------FLFND~LL~TK~~~kkk~~-------------------~~Y~vr-~ 64 (140)
T 3qwm_A 14 VCYCRLFEVPDPNKPQKLGLHQREI---------FLFNDLLVVTKIFQKKKNS-------------------VTYSFR-Q 64 (140)
T ss_dssp EEEEEEEECSCTTSCCCTTTTEEEE---------EEESSCEEEEECCC---CC-------------------CCCCCE-E
T ss_pred EEEEeeeeeccCcccccccccceEE---------EEecchhhheeecccCCCC-------------------CceEEE-E
Confidence 4777777888877543222222222 2222344999998877531 112222 3
Q ss_pred eEEeeCCeeeeecCCcccEEEEEecCCCC
Q psy14289 255 YLHVENGNFHASSTQWGAFTIHLLDDDES 283 (297)
Q Consensus 255 YL~Ve~g~F~Ass~~W~aF~I~Lvd~~~~ 283 (297)
|+.+.|=......+.|-||.|.|+....+
T Consensus 65 ~~~L~gm~V~~~e~e~~p~~~~l~s~~~G 93 (140)
T 3qwm_A 65 SFSLYGMQVLLFENQYYPNGIRLTSSVPG 93 (140)
T ss_dssp EECCTTEEEEEECCSSCTTEEEEEECCTT
T ss_pred EeeecceEEEcccCCCCceEEEEEecCCC
Confidence 55666666677777799999999976543
No 7
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=15.74 E-value=84 Score=26.01 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCEEEEeeecCCcccceeeEEeeC-Ceeeeec---CCcccEEEEEe
Q psy14289 237 GTKVALFNRLRSQTVSTRYLHVEN-GNFHASS---TQWGAFTIHLL 278 (297)
Q Consensus 237 GS~VALFNRlRSQTVSTRYL~Ve~-g~F~Ass---~~W~aF~I~Lv 278 (297)
+.+++| |+ ..-|||++.. |...|.+ ..|..|+|+|-
T Consensus 111 ~G~~aL----ra--~nG~yl~~~~~g~l~a~a~~~~~~E~f~v~l~ 150 (155)
T 2yug_A 111 DGKMAL----LA--SNSCFIRCNEAGDIEAKNKTAGEEEMIKIRSC 150 (155)
T ss_dssp TTCCEE----EE--TTSCBEEECSSSCEEECCSCCCTTTCCEEEEC
T ss_pred CCEEEE----Ee--CCCCEEEEcCCCcEEEecCCCCCCcEEEEEEe
Confidence 556665 33 5699999976 6677644 46889999874
No 8
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=13.71 E-value=2.5e+02 Score=25.04 Aligned_cols=56 Identities=27% Similarity=0.491 Sum_probs=32.8
Q ss_pred ccceEeeeeeeecCCCCCcceEEEEEEecCCCceeeEeecCCeEEEecCCcccccccccceee-ecCCEEEEeeecCCcc
Q psy14289 172 GKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCI-ASGTKVALFNRLRSQT 250 (297)
Q Consensus 172 ~k~~~~aKtL~ISDsDKrK~F~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~dlCI-~sGS~VALFNRlRSQT 250 (297)
|++||+ +|.|.|..-.+ |.|++|..+-..+ -|+ ..|. |=|++|++-|+
T Consensus 35 G~d~~~--tl~I~D~S~~g---l~v~iF~~~~~~L-------------------------P~v~~~GD-II~l~~vki~~ 83 (294)
T 1xjv_A 35 GTDYCS--VVTIVDQTNVK---LTCLLFSGNYEAL-------------------------PIIYKNGD-IVRFHRLKIQV 83 (294)
T ss_dssp SSSEEE--EEEEECTTCCE---EEEEEEESSGGGS-------------------------CCCCSTTC-EEEEEEEEEEE
T ss_pred CCeEEE--EEEEEcCCCCC---EEEEEECCChHHC-------------------------CCCCCCCC-EEEEEEEEEEE
Confidence 667764 68888865332 6666664322222 355 6676 55667788776
Q ss_pred cceeeEEe
Q psy14289 251 VSTRYLHV 258 (297)
Q Consensus 251 VSTRYL~V 258 (297)
...+-..+
T Consensus 84 ~~g~~~~v 91 (294)
T 1xjv_A 84 YKKETQGI 91 (294)
T ss_dssp ETTEEEEE
T ss_pred ECCeEEEE
Confidence 65554443
No 9
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=9.52 E-value=68 Score=21.77 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=22.0
Q ss_pred hHHHHHHHHhcCCCeEEEEEechhhhhhcC
Q psy14289 84 TREAMERYLRDRSDMVIVILHAKVAQKSYG 113 (297)
Q Consensus 84 ~r~~mr~yL~~~~e~tV~IlHakVAQKSYG 113 (297)
....+.+.|..+.-+.++-.|-.||||.||
T Consensus 20 ~~~EL~~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 20 DAKELKRILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHhc
Confidence 334556677766666677789999999997
No 10
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=8.29 E-value=1.2e+02 Score=25.11 Aligned_cols=13 Identities=38% Similarity=0.693 Sum_probs=10.7
Q ss_pred CCeEEEecCCccc
Q psy14289 212 KRIKVISKPSKKK 224 (297)
Q Consensus 212 k~IkVISKPSKKk 224 (297)
++|+-||||+++-
T Consensus 81 ~~ikriSkPg~Ri 93 (138)
T 2vqe_H 81 HHIRRISKPGRRV 93 (138)
T ss_dssp SCEEECSBTTBCC
T ss_pred cccEEecCCCcce
Confidence 5799999998764
Done!