RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14289
(297 letters)
>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 184
Score = 244 bits (625), Expect = 1e-82
Identities = 92/183 (50%), Positives = 119/183 (65%), Gaps = 34/183 (18%)
Query: 83 LTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLL 140
LT + M +L +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+GW+L+++++
Sbjct: 2 LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVA 61
Query: 141 REGE------------------SEQAAQLCAFIGIGNSDQDMQQLDLNNGK--------- 173
+ + +QA +L A+IGIG+ + QQLD + GK
Sbjct: 62 QLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQ 121
Query: 174 -----QYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLK 228
YCAAKTLYISDSDKRK+F L+ + FYG G +IG F S+RIKVISKPSKKKQS+K
Sbjct: 122 DPNIYDYCAAKTLYISDSDKRKYFDLNAQFFYGCGMEIGGFVSQRIKVISKPSKKKQSMK 181
Query: 229 NAD 231
N D
Sbjct: 182 NTD 184
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 161
Score = 112 bits (281), Expect = 4e-31
Identities = 49/63 (77%), Positives = 54/63 (85%), Gaps = 2/63 (3%)
Query: 232 LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDE--SESEEFS 289
LCIASGTKVALFNRLRSQTVSTRYLHVE FHASST+WGAFTIHL DD+ E++ F+
Sbjct: 4 LCIASGTKVALFNRLRSQTVSTRYLHVEGNAFHASSTKWGAFTIHLFDDERGLQETDNFA 63
Query: 290 VRD 292
VRD
Sbjct: 64 VRD 66
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermus thermophilus [TaxId: 274]}
Length = 345
Score = 32.8 bits (74), Expect = 0.044
Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 13/118 (11%)
Query: 26 WVGRNQTHKSAPRKHIHYLPSKLTRYFAMIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTR 85
+ + + L ++ R +++ +++ S + +R ++
Sbjct: 100 FANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSK 159
Query: 86 EAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPC-IYLYGEGWRLRQEQLLRE 142
+ER + + +VA+K K + GE WR E++ R
Sbjct: 160 PEVER---------VARVAFEVARK---RRKHVVSVDKANVLEVGEFWRKTVEEVGRG 205
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
213804]}
Length = 242
Score = 31.7 bits (72), Expect = 0.074
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 43 YLP--SKLTRYFAMIVC------DPSQNKVHYEG-WVPHSLHYRNDDQRLTREAMERYLR 93
Y+P YF + + + + +E W P +L N+D REAM +
Sbjct: 144 YVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYA 203
Query: 94 D----------RSDMVIV 101
D SD IV
Sbjct: 204 DDKGWVNEILFESDEAIV 221
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 28.5 bits (63), Expect = 0.48
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 9/68 (13%)
Query: 63 KVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPP 122
++H EG + D E + + + + + + + P
Sbjct: 31 QIHLEGRCGGRVFDCRDVAFTVGEGEDH-------DIPIGIDKALEKMQREEQCILHLGP 83
Query: 123 PCIYLYGE 130
Y +GE
Sbjct: 84 R--YGFGE 89
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 11/50 (22%)
Query: 28 GRNQTHKSAPRKHIHYLPSKLTRYF----------AMIVCDPSQNKVHYE 67
G N+ K I Y S LT AM+ S ++Y+
Sbjct: 288 GPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAA-LSPADINYD 336
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 26.5 bits (57), Expect = 4.3
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 13/45 (28%)
Query: 34 KSAPRKHIHYLPSKLTRYF----------AMIVC-DPSQNKVHYE 67
+ ++HI + SKLT M V PS + H
Sbjct: 282 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSS--HIN 324
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 26.2 bits (56), Expect = 5.3
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 69 WVPHSLHYRNDDQRLTREAMERY------LRDRSDMVIVILHAKVAQKSYGNEKRFFCPP 122
+ +SL + + ERY R I + A+ A+ Y ++
Sbjct: 5 SLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNA 64
Query: 123 P 123
Sbjct: 65 L 65
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 140
Score = 25.3 bits (55), Expect = 5.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 79 DDQRLTREAMERYLRDRSDMVIV 101
DD L R+ M + SDM +V
Sbjct: 10 DDSALMRQIMTEIINSHSDMEMV 32
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 123
Score = 24.8 bits (54), Expect = 7.2
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 79 DDQRLTREAMERYLRDRSDMVIV 101
DD R ++ Y+ + DM ++
Sbjct: 8 DDNRELVSLLDEYISSQPDMEVI 30
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 380
Score = 25.6 bits (55), Expect = 7.9
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 73 SLHYRNDDQRLTREAMERYLRDRSDMVIV 101
+++ R+ D+R MER+ + +D+VIV
Sbjct: 11 TIYPRDQDKRWEGVNMERF-AEEADVVIV 38
>d1y08a_ d.3.1.12 (A:) IgG-specific endopeptidase IdeS (Sib38)
{Streptococcus pyogenes [TaxId: 1314]}
Length = 291
Score = 25.3 bits (55), Expect = 8.6
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 178 AKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIK 215
K +Y++DSD + + ++K IK
Sbjct: 229 LKAIYVTDSDSNASIGMKKYFVGVNSAGKVAISAKEIK 266
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
(NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 137
Score = 24.6 bits (53), Expect = 9.4
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 79 DDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQE 137
+D ++ R +E YL + V K A K + + G + +
Sbjct: 7 EDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKW 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.408
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,107,038
Number of extensions: 49671
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 22
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)