BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14290
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PVL|A Chain A, Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex With
The Cen1 Of Sans
Length = 655
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 10/109 (9%)
Query: 77 LQVSAPLVIECASGESKQEHRP------IPGEEFTFQSPNAEDIRDLVVYFLEGLKKRSS 130
L++S P ++ +S + P I G+E+TF S NAEDIRDLVV FLEGL+KRS
Sbjct: 515 LELSFPEIMAVSSSRGTKMMAPSFTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSK 574
Query: 131 FVIALQDYKAP-GEGSSFLSFHRGDLILLEEGSTGETVFFMKKLWTNTV 178
+V+ALQD P GE S FLSF +GDLI+L+ TGE V M W N +
Sbjct: 575 YVVALQDNPNPAGEESGFLSFAKGDLIILDH-DTGEQV--MNSGWANGI 620
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 167 VFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEA-AKLAALVYRVRFGES 225
+FF K+++T + N + Q + + G ++C KE+ A+LA+ Y V +G S
Sbjct: 350 LFFRKEVFTPWHNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYG-S 408
Query: 226 KQELQAIPQMLRELIPSDSIK-IQSSTEWKRCIIAAYNQ--------DAGMSPEDAKITF 276
+ L+ + ++ IP I +++ +W + IAA+ + D+ ED + +
Sbjct: 409 EMILERLLSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDV-VNY 467
Query: 277 LKIIYRWPTFGSAFFEVKQTTEPNYPEM-LLIAINKHGVSLIHPQTKISLD 326
+ ++WP S F+E + + P P+ +++A+N GV + Q ++ L+
Sbjct: 468 AR--FKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLE 516
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX
Length = 511
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 23/161 (14%)
Query: 173 LWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQA- 231
L T+ VP KD + + F F Q ++ G+H +E LAAL R+++ + L A
Sbjct: 292 LDTDNVP-KD-SVEFAFMFEQAHEAVIHGHHPAPEENLQVLAAL--RLQYLQGDYTLHAA 347
Query: 232 IP--------QMLRELIPSDSIKIQSSTEW--------KRCIIAAYNQDAGMSPEDAKIT 275
IP Q L+ I S S K Q W + II + + GM+ E A
Sbjct: 348 IPPLEEVYSLQRLKARI-SQSTKTQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAK 406
Query: 276 FLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSL 316
++ +I WP +GS F+V + E +P+ L + ++ VS+
Sbjct: 407 YMALIKEWPGYGSTLFDV-ECKEGGFPQELWLGVSADAVSV 446
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 322
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 198 LLRGYHKCSKEEAAKLAALVYRVRFG--ESKQELQAI--PQMLRELIPSDSIKIQSSTEW 253
LL+G++ + LA+L+ ++ +G ESK+ Q + L+ ++P +K + W
Sbjct: 125 LLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLK-SKAPHW 183
Query: 254 KRCIIAAYNQ---DAGMSPEDAKI--TFLKIIYRWPTFGSAFF--EVKQTTEPNYPEML- 305
I+ Y G+S E + FL+ + PT+G+AFF ++ P+ +++
Sbjct: 184 TNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIP 243
Query: 306 -LIAINKHGVSLIHPQTK---ISLDYKSISW 332
+ +N G+ L++ +TK ISL Y W
Sbjct: 244 VYVGVNIKGLHLLNMETKALLISLKYGCFMW 274
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
pdb|3U7D|C Chain C, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
Length = 322
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 198 LLRGYHKCSKEEAAKLAALVYRVRFG--ESKQELQAI--PQMLRELIPSDSIKIQSSTEW 253
LL+G++ + LA+L+ ++ +G ESK+ Q + L+ ++P +K + W
Sbjct: 125 LLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLK-SKAPHW 183
Query: 254 KRCIIAAYNQ---DAGMSPEDAKI--TFLKIIYRWPTFGSAFF--EVKQTTEPNYPEML- 305
I+ Y G+S E + FL+ + PT+G+AFF ++ P+ +++
Sbjct: 184 TNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIP 243
Query: 306 -LIAINKHGVSLIHPQTK---ISLDYKSISW 332
+ +N G+ L++ +TK ISL Y W
Sbjct: 244 VYVGVNIKGLHLLNMETKALLISLKYGCFMW 274
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 165 ETVFFMKKLWTNTVPGKDRNAD------LIFHFHQELPKLLRGYHKCSKEEAAKLAALVY 218
ET+ +K + + D+N D L + Q +L G H S ++A + A
Sbjct: 160 ETLLLRRKFFYS-----DQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQC 214
Query: 219 RVRFG-ESKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFL 277
+++FG ++Q+ +A L++ +P + +K + +R I A+ MS +AK+ ++
Sbjct: 215 QIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKG----ERKIFQAHKNCGQMSEIEAKVRYV 270
Query: 278 KIIYRWPTFGSAFFEVKQTTE-PNYPEMLLIAINKHGVSLIHPQTK 322
K+ T+G +FF VK+ + N L+ I K V + +TK
Sbjct: 271 KLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTK 316
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 191 FHQELPKLLRGYHKCSKEEAAKLAALVYRVRFG-ESKQELQAIPQMLRELIPSDSIKIQS 249
+ Q +L G H S ++A + A +++FG ++Q+ +A L++ +P + +K
Sbjct: 33 YVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVK--- 89
Query: 250 STEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTE-PNYPEMLLIA 308
+ +R I A+ MS +AK+ ++K+ T+G +FF VK+ + N L+
Sbjct: 90 -QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLG 148
Query: 309 INKHGVSLIHPQTK 322
I K V + +TK
Sbjct: 149 ITKECVMRVDEKTK 162
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 198 LLRGYHKCSKEEAAKLAALVYRVRFG-ESKQELQAIPQMLRELIPSDSIKIQSSTEWKRC 256
+L G H S ++A + A +++FG ++Q+ +A L++ +P + +K + +R
Sbjct: 15 ILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVK----QKGERK 70
Query: 257 IIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTE-PNYPEMLLIAINKHGVS 315
I A+ MS +AK+ ++K+ T+G +FF VK+ + N L+ I K V
Sbjct: 71 IFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVM 130
Query: 316 LIHPQTK 322
+ +TK
Sbjct: 131 RVDEKTK 137
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 182 DRNAD------LIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFG-ESKQELQAIPQ 234
D+N D L + Q +L G H S ++A + A +++FG ++Q+ +
Sbjct: 7 DQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFL 66
Query: 235 MLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
L++ +P + IK + +R I A+ MS +AK+ ++K+ T+G +FF VK
Sbjct: 67 ELKDFLPKEYIK----QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVK 122
Query: 295 QTTE-PNYPEMLLIAINKHGVSLIHPQTK 322
+ + N L+ I K V + +TK
Sbjct: 123 EKMKGKNKLVPRLLGITKECVMRVDEKTK 151
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 182 DRNAD------LIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFG-ESKQELQAIPQ 234
D+N D L + Q +L G H S ++A + A +++FG ++Q+ +
Sbjct: 2 DQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFL 61
Query: 235 MLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
L++ +P + IK + +R I A+ MS +AK+ ++K+ T+G +FF VK
Sbjct: 62 ELKDFLPKEYIK----QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVK 117
Query: 295 QTTE-PNYPEMLLIAINKHGVSLIHPQTK 322
+ + N L+ I K V + +TK
Sbjct: 118 EKMKGKNKLVPRLLGITKECVMRVDEKTK 146
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound
To Its Specific Cargo, Dcc
pdb|3AU5|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette
pdb|3AU5|B Chain B, Structure Of The Human Myosin-X Myth4-Ferm Cassette
Length = 555
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 173 LWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAI 232
L T+ VP KD + + F F Q ++ G+H +E LAAL R+++ + L A
Sbjct: 309 LDTDNVP-KD-SVEFAFMFEQAHEAVIHGHHPAPEENLQVLAAL--RLQYLQGDYTLHAA 364
Query: 233 PQMLRELIPSDSIK--IQSSTE----------------------W--------KRCIIAA 260
L E+ +K I ST+ W + II
Sbjct: 365 IPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDK 424
Query: 261 YNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSL 316
+ + GM+ E A ++ +I WP +GS F+V + E +P+ L + ++ VS+
Sbjct: 425 WRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDV-ECKEGGFPQELWLGVSADAVSV 479
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 198 LLRGYHKCSKEEAAKLAALVYRVRFG-ESKQELQAIPQMLRELIPSDSIKIQSSTEWKRC 256
+L G H S ++A + A +++FG ++Q+ + L++ +P + IK + +R
Sbjct: 15 ILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKG----ERK 70
Query: 257 IIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTE-PNYPEMLLIAINKHGVS 315
I A+ MS +AK+ ++K+ T+G +FF VK+ + N L+ I K V
Sbjct: 71 IFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVM 130
Query: 316 LIHPQTK 322
+ +TK
Sbjct: 131 RVDEKTK 137
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 182 DRNAD------LIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFG---ESKQELQAI 232
D+N D L + Q +L G H S E+A + +++FG E K + +
Sbjct: 18 DQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFGGFQAQIQFGPHVEHKHKPGFL 77
Query: 233 PQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFE 292
L+E +P + IK + + ++ I + MS +AK+ ++K+ T+G +FF
Sbjct: 78 D--LKEFLPKEYIKQRGA---EKRIFQEHKNCGEMSEIEAKVKYVKLARSLRTYGVSFFL 132
Query: 293 VKQTTE-PNYPEMLLIAINKHGVSLIHPQTK 322
VK+ + N L+ I K V + +TK
Sbjct: 133 VKEKMKGKNKLVPRLLGITKDSVMRVDEKTK 163
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSSTE--WKRCIIAAY 261
C E + LA+ + ++G+ + + +E L+P I + T W+ I A Y
Sbjct: 121 CPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWY 180
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEV--KQTTEPNYPEMLLIAINKHGVSLIHP 319
+ G + ++A++ +LKI +G +F + K+ TE LL+ ++ G+ + P
Sbjct: 181 AEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTE------LLLGVDALGLHIYDP 234
Query: 320 QTKIS 324
+ +++
Sbjct: 235 ENRLT 239
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSSTE--WKRCIIAAY 261
C E + LA+ + ++G+ + + +E L+P I + T W+ I A Y
Sbjct: 134 CPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWY 193
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEV--KQTTEPNYPEMLLIAINKHGVSLIHP 319
+ G + ++A++ +LKI +G +F + K+ TE LL+ ++ G+ + P
Sbjct: 194 AEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTE------LLLGVDALGLHIYDP 247
Query: 320 QTKIS 324
+ +++
Sbjct: 248 ENRLT 252
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSSTE--WKRCIIAAY 261
C E + LA+ + ++G+ + + +E L+P I + T W+ I A Y
Sbjct: 134 CPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWY 193
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEV--KQTTEPNYPEMLLIAINKHGVSLIHP 319
+ G + ++A++ +LKI +G +F + K+ TE LL+ ++ G+ + P
Sbjct: 194 AEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTE------LLLGVDALGLHIYDP 247
Query: 320 QTKIS 324
+ +++
Sbjct: 248 ENRLT 252
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSSTE--WKRCIIAAY 261
C E + LA+ + ++G+ + + +E L+P I + T W+ I A Y
Sbjct: 116 CPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWY 175
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEV--KQTTEPNYPEMLLIAINKHGVSLIHP 319
+ G + ++A++ +LKI +G +F + K+ TE LL+ ++ G+ + P
Sbjct: 176 AEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNKKGTE------LLLGVDALGLHIYDP 229
Query: 320 QTKIS 324
+ +++
Sbjct: 230 ENRLT 234
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 249 SSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEV--KQTTEPNYPEMLL 306
S EW++ I + + GM EDA + +LKI +G +FE+ K+ TE L
Sbjct: 164 SREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTE------LW 217
Query: 307 IAINKHGVSLIHPQTKIS 324
+ ++ G+++ K++
Sbjct: 218 LGVDALGLNIYEKDDKLT 235
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSST--EWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ T +W+ I +
Sbjct: 117 CPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWH 176
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ GM ED+ + +LKI +G +FE+K
Sbjct: 177 EEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIK 209
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSST--EWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ T +W+ I +
Sbjct: 119 CPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWH 178
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ GM ED+ + +LKI +G +FE+K
Sbjct: 179 EEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIK 211
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSST--EWKRCIIAAY 261
C E A L + + +FG+ +E+ + E LIP + T +W+ I +
Sbjct: 116 CPPETAVLLGSYAVQAKFGDYNKEVHKSGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWH 175
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQT 321
+ GM ++A + +LKI +G +FE+K + L + ++ G+++
Sbjct: 176 AEHRGMLKDNAMLEYLKIAQDLEMYGINYFEIKNKKGTD----LWLGVDALGLNIYEKDD 231
Query: 322 KIS 324
K++
Sbjct: 232 KLT 234
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSST--EWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ T +W+ I +
Sbjct: 119 CPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWH 178
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ GM ED+ + +LKI +G +FE+K
Sbjct: 179 EEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIK 211
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSST--EWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ T +W+ I +
Sbjct: 119 CPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWH 178
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ GM ED+ + +LKI +G +FE+K
Sbjct: 179 EEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIK 211
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSST--EWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ T +W+ I +
Sbjct: 117 CPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWH 176
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ GM ED+ + +LKI +G +FE+K
Sbjct: 177 EEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIK 209
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQSST--EWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ T +W+ I +
Sbjct: 117 CPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWH 176
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ GM ED+ + +LKI +G +FE+K
Sbjct: 177 EEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIK 209
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 165 ETVFFMKKLWTNTVPGKDRNAD------LIFHFHQELPKLLRGYHKCSKEEAAKLAALVY 218
ET+ +K + + D+N D L + Q +L G H S ++A + A
Sbjct: 1 ETLLLRRKFFYS-----DQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQC 55
Query: 219 RVRFG-ESKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFL 277
+++FG ++Q+ + L++ +P + IK + +R I A+ MS +AK+ ++
Sbjct: 56 QIQFGPHNEQKHKPGFLELKDFLPKEYIK----QKGERKIFMAHKNCGNMSEIEAKVRYV 111
Query: 278 KIIYRWPTFG 287
K+ T+G
Sbjct: 112 KLARSLKTYG 121
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQ--SSTEWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ + +W+ I +
Sbjct: 117 CPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWH 176
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ GM EDA + +LKI +G +F +K
Sbjct: 177 EEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIK 209
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQ--SSTEWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ + +W+ I +
Sbjct: 117 CPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWH 176
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ GM EDA + +LKI +G +F +K
Sbjct: 177 EEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIK 209
>pdb|1HJD|A Chain A, Melanoma Inhibitory Activity (Mia) Protein
Length = 101
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKKLWTNTVPGKDRNADL 187
S +ALQDY AP FL+ HRG ++ + G F W +V G D DL
Sbjct: 16 SMAVALQDYMAP--DCRFLTIHRGQVVYVFSKLKGRGRLF----WGGSVQG-DYYGDL 66
>pdb|1I1J|A Chain A, Structure Of Melanoma Inhibitory Activity Protein: A
Member Of A New Family Of Secreted Proteins
pdb|1I1J|B Chain B, Structure Of Melanoma Inhibitory Activity Protein: A
Member Of A New Family Of Secreted Proteins
pdb|1K0X|A Chain A, Solution Structure Of Melanoma Inhibitory Activity Protein
Length = 108
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKKLWTNTVPGKDRNADL 187
S +ALQDY AP FL+ HRG ++ + G F W +V G D DL
Sbjct: 23 SMAVALQDYMAP--DCRFLTIHRGQVVYVFSKLKGRGRLF----WGGSVQG-DYYGDL 73
>pdb|3CUS|Q Chain Q, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|R Chain R, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|S Chain S, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
Length = 549
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 189 FHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKI 247
+HFH + K +AAKLAA + R G S + L+A+ L+ + S + I
Sbjct: 120 YHFHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGI 178
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 205 CSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE-LIPSDSIKIQ--SSTEWKRCIIAAY 261
C E A LA+ + ++G+ +E+ + + L+P ++ + +W+ I +
Sbjct: 114 CPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWH 173
Query: 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVK 294
+ G EDA + +LKI +G +F +K
Sbjct: 174 EEHRGXLREDAVLEYLKIAQDLEXYGVNYFSIK 206
>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|C Chain C, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|D Chain D, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|E Chain E, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|F Chain F, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|G Chain G, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|H Chain H, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|I Chain I, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|J Chain J, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|K Chain K, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|L Chain L, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|M Chain M, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXW|A Chain A, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|C Chain C, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|D Chain D, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|E Chain E, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|F Chain F, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|G Chain G, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|H Chain H, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|I Chain I, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|J Chain J, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|K Chain K, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|L Chain L, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|M Chain M, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
Length = 626
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 27/119 (22%)
Query: 174 WTNTVPGK--DRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYR-VRFGESKQELQ 230
W TV GK DR +L F+ HQ++ C++ ++ +L+ + R + F + L+
Sbjct: 181 WNPTVMGKEKDRKGELFFYMHQQM---------CARYDSERLSNGLQRMIPFHNFDEPLE 231
Query: 231 AIPQMLRELIPS---------------DSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKI 274
L L+ + +Q W+ I+ A N + ++ KI
Sbjct: 232 GYAPHLTSLVSGLQYASRPEGYSIHDLSDVDVQDMVRWRERILDAINMHYIVDKDNNKI 290
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILL 158
+VIAL+ Y + S LSFHRGDLI L
Sbjct: 10 YVIALRSYIT--DNCSLLSFHRGDLIKL 35
>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 564
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 204 KCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKI 247
K +AAKLAA + R G S++ L+A+ L+ + S + I
Sbjct: 135 KADPNKAAKLAASIDTARTGNSEKALKAVQDKLKAFVESGQLGI 178
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 71 KCSRKRLQVSAPLVIECASGESKQEHRPIPG--------------EEFTFQSPNAEDIRD 116
K RK+L A A+GESK+ HR PG E + P +R+
Sbjct: 14 KAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 73
Query: 117 LVVYFLEGLKKRSSFVIALQD 137
+ F L+ +SS V+ALQ+
Sbjct: 74 IAQDFKTDLRFQSSAVMALQE 94
>pdb|3GR1|A Chain A, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|B Chain B, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|C Chain C, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|D Chain D, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|E Chain E, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|F Chain F, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|G Chain G, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|H Chain H, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
Length = 227
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 196 PKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIP-SDSIKIQSSTEWK 254
P+L Y++ +E K + R R SK+EL+ + Q LR L+P +DS+ I +
Sbjct: 76 PQL--AYYRIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLRALMPYADSVNITLMDD-- 131
Query: 255 RCIIAAYNQDAGM 267
+ AA +AG+
Sbjct: 132 --VTAAGQAEAGL 142
>pdb|2Y9J|A Chain A, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|B Chain B, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|C Chain C, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|D Chain D, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|E Chain E, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|F Chain F, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|G Chain G, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|H Chain H, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|I Chain I, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|J Chain J, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|K Chain K, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|L Chain L, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|M Chain M, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|N Chain N, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|O Chain O, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|P Chain P, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|Q Chain Q, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|R Chain R, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|S Chain S, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|T Chain T, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|U Chain U, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|V Chain V, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|W Chain W, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
pdb|2Y9J|X Chain X, Three-Dimensional Model Of Salmonella's Needle Complex At
Subnanometer Resolution
Length = 186
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 173 LWTNTVPGK---DRNADLIFHFHQE----------LPKLLRGYHKCSKEEAAKLAALVYR 219
LW V + D+NA +I + P+L Y++ +E K + R
Sbjct: 29 LWARQVLARGDYDKNARVINENEENKRISIWLDTYYPQL--AYYRIHFDEPRKPVFWLSR 86
Query: 220 VRFGESKQELQAIPQMLRELIP-SDSIKIQSSTEWKRCIIAAYNQDAGMSPE 270
R SK+EL+ + Q LR L+P +DS+ I + + AA +AG+ +
Sbjct: 87 QRNTMSKKELEVLSQKLRALMPYADSVNITLMDD----VTAAGQAEAGLKQQ 134
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 71 KCSRKRLQVSAPLVIECASGESKQEHRPIPG--------------EEFTFQSPNAEDIRD 116
K RK+L A A+GESK+ HR PG E + P +R+
Sbjct: 14 KAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 73
Query: 117 LVVYFLEGLKKRSSFVIALQD 137
+ F L+ +SS V+ALQ+
Sbjct: 74 IAQDFKTDLRFQSSAVMALQE 94
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 71 KCSRKRLQVSAPLVIECASGESKQEHRPIPG--------------EEFTFQSPNAEDIRD 116
K RK+L A A+GESK+ HR PG E + P +R+
Sbjct: 14 KAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 73
Query: 117 LVVYFLEGLKKRSSFVIALQD 137
+ F L+ +SS V+ALQ+
Sbjct: 74 IAQDFKTDLRFQSSAVMALQE 94
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 71 KCSRKRLQVSAPLVIECASGESKQEHRPIPG--------------EEFTFQSPNAEDIRD 116
K RK+L A A+GESK+ HR PG E + P +R+
Sbjct: 14 KAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 73
Query: 117 LVVYFLEGLKKRSSFVIALQD 137
+ F L+ +SS V+ALQ+
Sbjct: 74 IAQDFKTDLRFQSSAVMALQE 94
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 71 KCSRKRLQVSAPLVIECASGESKQEHRPIPG--------------EEFTFQSPNAEDIRD 116
K RK+L A A+GESK+ HR PG E + P +R+
Sbjct: 14 KAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 73
Query: 117 LVVYFLEGLKKRSSFVIALQD 137
+ F L+ +SS V+ALQ+
Sbjct: 74 IAQDFKTDLRFQSSAVMALQE 94
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 71 KCSRKRLQVSAPLVIECASGESKQEHRPIPG--------------EEFTFQSPNAEDIRD 116
K RK+L A A+GESK+ HR PG E + P +R+
Sbjct: 14 KAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 73
Query: 117 LVVYFLEGLKKRSSFVIALQD 137
+ F L+ +SS V+ALQ+
Sbjct: 74 IAQDFKTDLRFQSSAVMALQE 94
>pdb|3GR0|A Chain A, Periplasmic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-362)
pdb|3GR0|B Chain B, Periplasmic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-362)
pdb|3GR0|C Chain C, Periplasmic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-362)
pdb|3GR0|D Chain D, Periplasmic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-362)
Length = 197
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 173 LWTNTVPGK---DRNADLIFHFHQE----------LPKLLRGYHKCSKEEAAKLAALVYR 219
LW V + D+NA +I + P+L Y++ +E K + R
Sbjct: 40 LWARQVLARGDYDKNARVINENEENKRISIWLDTYYPQL--AYYRIHFDEPRKPVFWLSR 97
Query: 220 VRFGESKQELQAIPQMLRELIP-SDSIKIQSSTEWKRCIIAAYNQDAGMSPE 270
R SK+EL+ + Q LR L+P +DS+ I + + AA +AG+ +
Sbjct: 98 QRNTMSKKELEVLSQKLRALMPYADSVNITLMDD----VTAAGQAEAGLKQQ 145
>pdb|1YRQ|H Chain H, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|I Chain I, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|J Chain J, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|K Chain K, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|M Chain M, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|N Chain N, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
Length = 549
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 204 KCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKI 247
K +AAKLAA + R G S + L+A+ L+ + S + I
Sbjct: 135 KADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGI 178
>pdb|3CUR|H Chain H, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|I Chain I, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|J Chain J, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
Length = 549
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 204 KCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKI 247
K +AAKLAA + R G S + L+A+ L+ + S + I
Sbjct: 135 KADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGI 178
>pdb|3H3X|Q Chain Q, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|R Chain R, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|S Chain S, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
Length = 549
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 204 KCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKI 247
K +AAKLAA + R G S + L+A+ L+ + S + I
Sbjct: 135 KADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGI 178
>pdb|1YQW|Q Chain Q, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|1YQW|R Chain R, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|1YQW|S Chain S, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
Length = 549
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 204 KCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKI 247
K +AAKLAA + R G S + L+A+ L+ + S + I
Sbjct: 135 KADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGI 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,041,332
Number of Sequences: 62578
Number of extensions: 405280
Number of successful extensions: 964
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 52
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)