Query psy14290
Match_columns 332
No_of_seqs 227 out of 746
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 16:04:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3530|consensus 100.0 2.6E-30 5.6E-35 253.6 15.9 214 95-324 14-232 (616)
2 smart00295 B41 Band 4.1 homolo 100.0 6.3E-28 1.4E-32 215.1 15.7 191 96-291 8-207 (207)
3 KOG3529|consensus 99.9 1.1E-27 2.3E-32 242.1 6.7 223 96-332 18-251 (596)
4 PF00373 FERM_M: FERM central 99.9 9.8E-24 2.1E-28 174.0 11.0 111 181-291 5-126 (126)
5 KOG0792|consensus 99.9 5.6E-23 1.2E-27 212.5 14.3 219 96-322 27-250 (1144)
6 KOG3527|consensus 99.8 6.5E-21 1.4E-25 193.8 12.8 208 96-321 36-249 (975)
7 KOG0248|consensus 99.8 5.8E-21 1.3E-25 189.6 4.8 166 166-331 675-843 (936)
8 KOG4261|consensus 99.7 4.2E-18 9.2E-23 171.2 -0.1 229 96-328 89-349 (1003)
9 KOG3531|consensus 99.3 1.9E-12 4.2E-17 131.9 2.9 216 96-332 44-263 (1036)
10 KOG3552|consensus 98.9 2.6E-09 5.5E-14 110.4 7.6 205 100-315 192-428 (1298)
11 KOG4371|consensus 98.3 4.5E-07 9.8E-12 95.2 4.1 208 125-332 543-766 (1332)
12 PF09379 FERM_N: FERM N-termin 98.1 5.8E-06 1.3E-10 62.7 5.1 77 96-175 1-80 (80)
13 KOG3727|consensus 97.8 5.2E-05 1.1E-09 75.7 6.7 91 238-331 504-594 (664)
14 cd00435 ACBP Acyl CoA binding 97.7 0.00015 3.3E-09 56.0 7.2 81 190-287 4-85 (85)
15 cd00836 FERM_C FERM_C domain. 97.5 0.00021 4.5E-09 55.9 5.0 33 285-321 1-33 (92)
16 KOG4257|consensus 97.3 0.00049 1.1E-08 70.3 7.2 153 163-317 90-255 (974)
17 PF00887 ACBP: Acyl CoA bindin 97.3 0.00069 1.5E-08 52.5 6.1 75 191-282 5-81 (87)
18 PTZ00458 acyl CoA binding prot 97.1 0.0019 4.2E-08 50.4 6.8 79 191-286 5-86 (90)
19 COG4281 ACB Acyl-CoA-binding p 96.9 0.0024 5.2E-08 47.6 5.4 79 188-283 3-81 (87)
20 KOG3784|consensus 96.3 0.081 1.8E-06 51.4 12.8 146 96-293 112-267 (407)
21 KOG4335|consensus 96.1 0.0019 4E-08 64.2 0.8 158 167-326 328-501 (558)
22 KOG0817|consensus 95.6 0.039 8.4E-07 46.7 6.6 88 190-294 8-96 (142)
23 KOG4229|consensus 94.9 0.0041 8.9E-08 67.7 -1.7 213 96-313 615-841 (1062)
24 KOG4371|consensus 94.7 0.018 4E-07 61.6 2.3 123 96-226 42-179 (1332)
25 KOG4335|consensus 92.6 0.16 3.4E-06 50.9 4.6 160 166-326 199-396 (558)
26 PF09380 FERM_C: FERM C-termin 90.8 0.2 4.3E-06 38.6 2.5 28 303-332 5-32 (90)
27 KOG3878|consensus 80.6 1.9 4.2E-05 41.2 3.8 69 203-286 51-121 (469)
28 KOG3727|consensus 77.7 1.4 3E-05 44.9 2.0 43 180-222 273-315 (664)
29 PF08416 PTB: Phosphotyrosine- 74.7 4.9 0.00011 33.5 4.2 36 297-332 34-69 (131)
30 cd01215 Dab Disabled (Dab) Pho 69.2 6.2 0.00014 33.3 3.6 28 303-330 53-80 (139)
31 KOG3531|consensus 66.4 2.8 6.1E-05 44.7 1.2 109 184-299 269-379 (1036)
32 cd01267 CED6_AIDA1b Phosphotyr 61.1 12 0.00027 30.8 3.9 28 303-330 45-72 (132)
33 PF00640 PID: Phosphotyrosine 60.3 16 0.00035 29.7 4.6 30 301-330 50-79 (140)
34 cd00934 PTB Phosphotyrosine-bi 58.8 17 0.00037 28.8 4.4 29 302-330 41-69 (123)
35 cd01268 Numb Numb Phosphotyros 58.3 14 0.0003 31.1 3.8 28 303-330 50-77 (138)
36 cd01274 AIDA-1b AIDA-1b Phosph 56.3 17 0.00037 30.0 4.0 28 303-330 41-68 (127)
37 smart00462 PTB Phosphotyrosine 52.2 25 0.00055 28.4 4.4 30 301-330 42-71 (134)
38 cd01273 CED-6 CED-6 Phosphotyr 52.2 20 0.00044 30.1 3.9 28 303-330 55-82 (142)
39 cd01269 PLX Pollux (PLX) Phosp 51.2 23 0.0005 29.3 3.8 28 303-330 43-70 (129)
40 cd01216 Fe65 Fe65 Phosphotyros 50.2 24 0.00052 29.0 3.9 28 303-330 40-67 (123)
41 cd01208 X11 X11 Phosphotyrosin 42.0 28 0.00061 29.9 3.1 26 303-328 50-75 (156)
42 cd01210 EPS8 Epidermal growth 37.7 30 0.00066 28.7 2.6 35 297-331 36-70 (127)
43 PRK10941 hypothetical protein; 34.8 2.1E+02 0.0045 26.8 8.1 51 264-326 94-148 (269)
44 PHA03001 putative virion core 32.7 1.2E+02 0.0025 25.3 5.2 45 110-159 28-77 (132)
45 PRK11235 bifunctional antitoxi 26.4 1.6E+02 0.0035 22.4 4.7 34 252-286 11-47 (80)
46 PF07653 SH3_2: Variant SH3 do 25.2 48 0.001 22.6 1.6 33 131-165 1-35 (55)
47 PF08256 Antimicrobial20: Aure 25.0 45 0.00099 16.5 1.0 11 5-15 1-11 (13)
48 PF00788 RA: Ras association ( 24.8 1.4E+02 0.0031 22.0 4.4 32 103-134 18-52 (93)
49 PF06382 DUF1074: Protein of u 23.1 47 0.001 29.2 1.4 27 3-29 83-113 (183)
50 PF06138 Chordopox_E11: Chordo 22.6 3E+02 0.0064 22.9 5.9 58 111-176 30-92 (130)
51 TIGR02384 RelB_DinJ addiction 21.5 2.2E+02 0.0048 21.5 4.8 36 252-288 12-50 (83)
No 1
>KOG3530|consensus
Probab=99.97 E-value=2.6e-30 Score=253.64 Aligned_cols=214 Identities=19% Similarity=0.294 Sum_probs=182.1
Q ss_pred eeeeecCCeEEEEc---CChhhHHHHHHHHHHhhcccceeEEEEeecCCCCCCCeeeeccCCceEEeecCCCceEEEEEE
Q psy14290 95 EHRPIPGEEFTFQS---PNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMK 171 (332)
Q Consensus 95 ~~~tl~g~~~~l~~---~~a~~~~elV~~~l~gL~e~s~f~lal~d~~~~~d~~~~L~~~kgd~iiLeq~~~~~~L~Frr 171 (332)
.|.+|||....+.. .+|+++.|.|+..++ |.|..+|++.+.|.. --..||++-|....++.- ..|+.|+||.
T Consensus 14 ~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ld-l~E~DYFGLry~D~~---~~~hWLD~tK~I~kqvK~-gppytL~~rV 88 (616)
T KOG3530|consen 14 RVLLLDGSDLSINFPKTAKGQELLDYVFYHLD-LIEKDYFGLRYQDSS---KVRHWLDPTKSIKKQVKI-GPPYTLHLRV 88 (616)
T ss_pred EEEEecCccceeccCcccchHHHHHHHHHhhc-eeeeeccceeeechh---hcceecCcchhHHHHhcc-CCCeEEEEEE
Confidence 48889988776664 689999999999995 999999999999976 347999987665544443 3599999999
Q ss_pred EeccccCCCCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhh--hcCChhhhhccC
Q psy14290 172 KLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLR--ELIPSDSIKIQS 249 (332)
Q Consensus 172 k~w~~~~~~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~--~~lP~~~~~~~~ 249 (332)
|+|..--....++.++-++|+|+++||++||++|+.++|++||||.+|+++|||+...+ ....+. +|+|.+
T Consensus 89 KfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~H-t~~yVSefRf~p~Q------ 161 (616)
T KOG3530|consen 89 KFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEH-TGGYVSEFRFLPNQ------ 161 (616)
T ss_pred EeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhc-cccceeeeEecccc------
Confidence 99986322346778888999999999999999999999999999999999999986532 222332 578886
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCCceEEEEEecCceEEEcCCCcee
Q psy14290 250 STEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTKIS 324 (332)
Q Consensus 250 ~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p~~~~LgVn~~Gv~i~~~~~~~~ 324 (332)
.|+++.+|.+.|++++|++|++|+.+||..|+.++|||+..+.|+...+ .+..||++..||.+++..++.-
T Consensus 162 te~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg----~ey~LGLTptGIlvf~g~~kig 232 (616)
T KOG3530|consen 162 TEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDG----SEYYLGLTPTGILVFEGKKKIG 232 (616)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCC----ceeEeeccCceEEEEECCceee
Confidence 6889999999999999999999999999999999999999999998655 4799999999999999988754
No 2
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.95 E-value=6.3e-28 Score=215.06 Aligned_cols=191 Identities=24% Similarity=0.439 Sum_probs=155.9
Q ss_pred eeeecCCeEEEEcCChhhHHHHHHHHHH--hhcccceeEEEEeecCCCCCCCeeeeccCCceEEeecCC--CceEEEEEE
Q psy14290 96 HRPIPGEEFTFQSPNAEDIRDLVVYFLE--GLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGS--TGETVFFMK 171 (332)
Q Consensus 96 ~~tl~g~~~~l~~~~a~~~~elV~~~l~--gL~e~s~f~lal~d~~~~~d~~~~L~~~kgd~iiLeq~~--~~~~L~Frr 171 (332)
|.++||+..++..++.+++.|+++.+++ ||....+|++...+... +...|+... ..+.++.. .+++|+||+
T Consensus 8 V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~--~~~~~l~~~---~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 8 VYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDE--DLSHWLDPA---KTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred EEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCC--CcCeeCCCc---cCHHHhcCCCCCcEEEEEE
Confidence 6889999999998888888888888887 45566667776665432 333677542 33344443 368999999
Q ss_pred EeccccC-CCCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhc--cHHHHhhhcCChhhhhcc
Q psy14290 172 KLWTNTV-PGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQ--AIPQMLRELIPSDSIKIQ 248 (332)
Q Consensus 172 k~w~~~~-~~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~--~~~~~l~~~lP~~~~~~~ 248 (332)
++|.++. ...+|+...+++|.|+++||++|++||+.|+++.||||++|+++||++.... .....+.+|+|+.+....
T Consensus 83 r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~ 162 (207)
T smart00295 83 KFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSE 162 (207)
T ss_pred EEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhc
Confidence 9998863 2346888889999999999999999999999999999999999999975431 223457899999998764
Q ss_pred --CHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEE
Q psy14290 249 --SSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFF 291 (332)
Q Consensus 249 --~~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F 291 (332)
+.+.|+++|.+.|+++.|+|+.+|+..||++|++||+||+++|
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 163 KRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred cccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 6889999999999999999999999999999999999999987
No 3
>KOG3529|consensus
Probab=99.94 E-value=1.1e-27 Score=242.11 Aligned_cols=223 Identities=21% Similarity=0.374 Sum_probs=187.3
Q ss_pred eeeecCCeEEEEc---CChhhHHHHHHHHHHhhcccceeEEEEeecCCCCCCCeeeeccCCceEEeecCC---CceEEEE
Q psy14290 96 HRPIPGEEFTFQS---PNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGS---TGETVFF 169 (332)
Q Consensus 96 ~~tl~g~~~~l~~---~~a~~~~elV~~~l~gL~e~s~f~lal~d~~~~~d~~~~L~~~kgd~iiLeq~~---~~~~L~F 169 (332)
|+|||.+.. +.+ .++.+++++|+..+ ||+|-++|++++.|.. +++.|+.. |++++.++. .|..+.|
T Consensus 18 v~~~d~e~~-~~i~~~~t~~~l~dlv~~~~-glre~~yfgl~~~d~~---~~~~wl~~---d~~v~~~d~~k~~~~~~~f 89 (596)
T KOG3529|consen 18 VTTMDAELE-FAIQPKTTGKQLFDLVVKTI-GLRESWYFGLQYTDSK---GEPTWLKL---DKKVLDQDVPKDSPLNFHF 89 (596)
T ss_pred eeehhhhhh-hhhCcchhHHHHHHHHhccC-CCchhhhcccccccCC---CCcchhhc---cchhhhhhcCCCCCcceee
Confidence 799997744 554 69999999999999 6999999999998854 77888855 455665543 4588999
Q ss_pred EEEeccccCC-CCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHHHh--hhcCChhhhh
Q psy14290 170 MKKLWTNTVP-GKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQML--RELIPSDSIK 246 (332)
Q Consensus 170 rrk~w~~~~~-~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l--~~~lP~~~~~ 246 (332)
+.+||..... ..-+..+.+|+|+||+..|+.+.++|++|+.+.|||+++|+.+|||+...... ..| .+.+|.+++.
T Consensus 90 ~akfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~~~-~~l~~~~~lP~~~~~ 168 (596)
T KOG3529|consen 90 HAKFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKETHKV-GRLAGDRLLPQRVLD 168 (596)
T ss_pred eeecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccchhhhh-hccccCcccchhhhh
Confidence 9999987543 22355789999999999999999999999999999999999999997553211 222 4688999887
Q ss_pred c--cCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCCceEEEEEecCceEEEcCCCcee
Q psy14290 247 I--QSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTKIS 324 (332)
Q Consensus 247 ~--~~~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p~~~~LgVn~~Gv~i~~~~~~~~ 324 (332)
+ ++.++|+.+|..+|.++.|++.++|+.+||++++.+|+||+++|++.++.|. ++||||+..|+.+|+..++ +
T Consensus 169 q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt----~~~lgv~~~gl~~y~~~~k-~ 243 (596)
T KOG3529|consen 169 QHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGT----DLWLGVDALGLNIYDESDK-L 243 (596)
T ss_pred hccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCC----ccccccccCCccccccccC-C
Confidence 5 6899999999999999999999999999999999999999999999998874 7999999999999999887 5
Q ss_pred eeeecccC
Q psy14290 325 LDYKSISW 332 (332)
Q Consensus 325 l~~~~~~w 332 (332)
=....|+|
T Consensus 244 ~P~~~f~w 251 (596)
T KOG3529|consen 244 TPKIGFPW 251 (596)
T ss_pred CCCCCCCc
Confidence 55666666
No 4
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.90 E-value=9.8e-24 Score=174.03 Aligned_cols=111 Identities=35% Similarity=0.583 Sum_probs=95.8
Q ss_pred CCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhc----cHHHHh-----hhcCC--hhhhhccC
Q psy14290 181 KDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQ----AIPQML-----RELIP--SDSIKIQS 249 (332)
Q Consensus 181 ~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~----~~~~~l-----~~~lP--~~~~~~~~ 249 (332)
.+|+.+++++|.|++++|+.|++||+.++|++||||++|+++||+++... .+...+ ..|+| ........
T Consensus 5 ~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~ 84 (126)
T PF00373_consen 5 IDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMK 84 (126)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCST
T ss_pred cCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhh
Confidence 57899999999999999999999999999999999999999999973311 111122 24899 88888889
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEE
Q psy14290 250 STEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFF 291 (332)
Q Consensus 250 ~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F 291 (332)
.+.|+++|.+.|++++|+|+.+|+..||++|++||+||++||
T Consensus 85 ~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 85 QKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 999999999999999999999999999999999999999998
No 5
>KOG0792|consensus
Probab=99.89 E-value=5.6e-23 Score=212.48 Aligned_cols=219 Identities=18% Similarity=0.274 Sum_probs=177.5
Q ss_pred eeeecCC--eEEEEc-CChhhHHHHHHHHHHhhcccceeEEEEeecCCCCCCCeeeeccCCceEEeecCCCceEEEEEEE
Q psy14290 96 HRPIPGE--EFTFQS-PNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKK 172 (332)
Q Consensus 96 ~~tl~g~--~~~l~~-~~a~~~~elV~~~l~gL~e~s~f~lal~d~~~~~d~~~~L~~~kgd~iiLeq~~~~~~L~Frrk 172 (332)
+..+|+. +|++.+ +.|++..|.|...+ +|++..+|++...+.. .+...|+++.|.+.+.++....+..|+||++
T Consensus 27 i~llds~~~eftls~es~gQ~~ld~V~qrL-~~~e~~yFgl~~~~~k--~~~~rWvdleK~lkkql~k~a~~p~l~frV~ 103 (1144)
T KOG0792|consen 27 ILLLDSDVVEFTLSSESTGQELLDAVAQRL-ELREKEYFGLLWSPDK--PDQIRWVDLEKPLKKQLIKVANPPLLHFRVK 103 (1144)
T ss_pred EEecCCceEEEEEecCCCchhHHHHHhhhh-cccccccccccccCCc--cCccceeccchhHHHhhhccCCCceEEEEEE
Confidence 4567777 455554 68899999999999 5999999996655543 3888999999988888877666889999999
Q ss_pred eccccCCCCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhh-ccHHHHhhhcCChhhhh-ccCH
Q psy14290 173 LWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQEL-QAIPQMLRELIPSDSIK-IQSS 250 (332)
Q Consensus 173 ~w~~~~~~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~-~~~~~~l~~~lP~~~~~-~~~~ 250 (332)
||+..-....++.++-.+|+|++.||+.|++||+.++|++||+|..|+++|||+... +...+.+ .+.|..... ....
T Consensus 104 fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~Ct~~qailLA~yavQae~gdy~~~~s~~~l~~~-~~~p~~~~~~~n~~ 182 (1144)
T KOG0792|consen 104 FYVPDPSGLQEEATRYQYYLQVKKDILEGRLPCTLNQAILLASYAVQAEFGDYNQKQSQDGLEYL-SVFPQCTLQDENVL 182 (1144)
T ss_pred EEecChhHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHhhhhhhhcchhhhcCCccchhc-cccccccccchhhH
Confidence 999853344677888999999999999999999999999999999999999997421 1111122 234444332 2235
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCCceEEEEEecCceEEEcCCCc
Q psy14290 251 TEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTK 322 (332)
Q Consensus 251 e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p~~~~LgVn~~Gv~i~~~~~~ 322 (332)
++.+++|.+.|+.+.|+.+.+|+..||+.|+++.+||..||.+++..+ .++.|||...||.|...+-.
T Consensus 183 ~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g----~~i~lGi~~~Gi~V~~~~g~ 250 (1144)
T KOG0792|consen 183 EEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHG----NDINLGIARVGILVPGQNGR 250 (1144)
T ss_pred HHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCC----cceeeeeeeceeEeeccCcc
Confidence 688999999999999999999999999999999999999999999776 47999999999999985433
No 6
>KOG3527|consensus
Probab=99.85 E-value=6.5e-21 Score=193.75 Aligned_cols=208 Identities=16% Similarity=0.244 Sum_probs=171.3
Q ss_pred eeeecCCeEEEEc---CChhhHHHHHHHHHHhhcccceeEEEEeecCCCCCCCeeeeccCCceEEeecCCCceEEEEEEE
Q psy14290 96 HRPIPGEEFTFQS---PNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKK 172 (332)
Q Consensus 96 ~~tl~g~~~~l~~---~~a~~~~elV~~~l~gL~e~s~f~lal~d~~~~~d~~~~L~~~kgd~iiLeq~~~~~~L~Frrk 172 (332)
|++|+|.+|.... ..|+++++.||.+|+ |-|..+|++.+.+.. +...||++.+.....+ ...+|.|.|-.+
T Consensus 36 vtlld~s~~~~~~ek~~kg~~~~~~vc~~Ln-liEkdyfgl~~~~~~---~~~~wlD~~k~i~k~v--r~~~w~f~f~vK 109 (975)
T KOG3527|consen 36 VTLLDGSEYSCDVEKHAKGQVLFDKVCEHLN-LLEKDYFGLTYLTSS---EQKNWLDPAKEIKKQV--RSFPWNFTFNVK 109 (975)
T ss_pred EEEeeCCcceeeeecccccchhHHHHhhccc-hhhhhhceeEEecCC---CCccccccchhhhccc--ccCccceeEeee
Confidence 8999988777766 588999999998884 889999999999854 6789998877655554 346899999999
Q ss_pred eccc-cCCCCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhhh--cCChhhhhccC
Q psy14290 173 LWTN-TVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRE--LIPSDSIKIQS 249 (332)
Q Consensus 173 ~w~~-~~~~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~--~lP~~~~~~~~ 249 (332)
++.+ |--..+| +++-.+.+|++.||+.|++||+.-..+.|.+|.+|+++|||++....- ..+.+ +-|.+
T Consensus 110 fyPp~Psql~Ed-itrY~lcLq~R~Dil~GrlPcsfvt~allgsy~vq~E~gdYd~ee~~~-~y~~df~~aPnq------ 181 (975)
T KOG3527|consen 110 FYPPDPSQLTED-ITRYYLCLQLRQDILSGRLPCSFVTHALLGSYTVQSELGDYDPEEHGS-DYLSDFKFAPNQ------ 181 (975)
T ss_pred eCCCChHhcccc-chhheehhhhhhhhhcCccccchhhhhhhhhHhHHhHhccCCHHHccc-chhhhhccCcch------
Confidence 8876 2112244 344459999999999999999999999999999999999998753211 34443 45654
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCCceEEEEEecCceEEEcCCC
Q psy14290 250 STEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQT 321 (332)
Q Consensus 250 ~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p~~~~LgVn~~Gv~i~~~~~ 321 (332)
..++++.+.+.|+.++||+|.+|++.||+.+.++-|||+.++.+++..|. ++.|||++.|+.+|.+.-
T Consensus 182 t~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegv----di~lgvca~glliy~d~l 249 (975)
T KOG3527|consen 182 TKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGV----DIMLGVCASGLLIYRDRL 249 (975)
T ss_pred hhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccc----eeeecccccceEEeechh
Confidence 46688999999999999999999999999999999999999999997764 899999999999997653
No 7
>KOG0248|consensus
Probab=99.82 E-value=5.8e-21 Score=189.57 Aligned_cols=166 Identities=19% Similarity=0.328 Sum_probs=145.6
Q ss_pred EEEEEEEeccccCCCCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhh--ccHHHHhhhcCChh
Q psy14290 166 TVFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQEL--QAIPQMLRELIPSD 243 (332)
Q Consensus 166 ~L~Frrk~w~~~~~~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~--~~~~~~l~~~lP~~ 243 (332)
.|+.|+++|.......+++.++.|+|.|.-+.|..|++|.+.+.+.++|||..|..+||-+... ..+...+++|.|.+
T Consensus 675 ~l~~~~r~y~~~~~~~et~~erlll~~~~s~eIv~gr~p~~~~l~e~~AaL~aq~~~gd~~~~~k~q~l~qv~~rFyP~r 754 (936)
T KOG0248|consen 675 ALSLRMRHYWGHLALTETPIERQFLVWRASEEIVNGRIPLSNQLCESLAALYAQMVFGDANQSLSDQQFEFISQRFYPSK 754 (936)
T ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHhhchHHhhcCcCcchHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhChhh
Confidence 4556666555445567899999999999999999999999999999999999999999986442 34455678999999
Q ss_pred hhhccCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCC-ceEEEEEecCceEEEcCCCc
Q psy14290 244 SIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYP-EMLLIAINKHGVSLIHPQTK 322 (332)
Q Consensus 244 ~~~~~~~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p-~~~~LgVn~~Gv~i~~~~~~ 322 (332)
++.....++++++|...|..++|+|+.||...||..|++||+||+.+|.++...-++.. .=+|||||.+||+++|.+++
T Consensus 755 yrdga~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd~N~M 834 (936)
T KOG0248|consen 755 MLDVACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLDRNHM 834 (936)
T ss_pred hhccCCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceeccccce
Confidence 99999999999999999999999999999999999999999999999999875444333 46999999999999999999
Q ss_pred eeeeeeccc
Q psy14290 323 ISLDYKSIS 331 (332)
Q Consensus 323 ~~l~~~~~~ 331 (332)
.++.+|.|+
T Consensus 835 ~vi~tYpYs 843 (936)
T KOG0248|consen 835 DVIRTYPYS 843 (936)
T ss_pred eEEEEeecc
Confidence 999999986
No 8
>KOG4261|consensus
Probab=99.68 E-value=4.2e-18 Score=171.17 Aligned_cols=229 Identities=21% Similarity=0.309 Sum_probs=171.8
Q ss_pred eeeecCCeEEEEcCChhhHHHHHHHHHHh--hcccceeEEEEeecCCCC--CCCeeeecc------------CCceE---
Q psy14290 96 HRPIPGEEFTFQSPNAEDIRDLVVYFLEG--LKKRSSFVIALQDYKAPG--EGSSFLSFH------------RGDLI--- 156 (332)
Q Consensus 96 ~~tl~g~~~~l~~~~a~~~~elV~~~l~g--L~e~s~f~lal~d~~~~~--d~~~~L~~~------------kgd~i--- 156 (332)
+..++|..-++..+..+.+.+|...++.. +.+...|.+--.+....+ ...+|.... +.++.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvre~~~~~~~~~tgtl~~~~~~m~~~~kme~Lkkkl~td~ 168 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVREDIEEQNEEGTGTLNLKRKLMRKERKMEKLRKKLHTDD 168 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccchhhhhhhHHHHHHhcCCCCceEEeehhHHHhhhhhHHHHhhcccch
Confidence 78999999999999999999998877762 322222221110000000 111121100 00000
Q ss_pred ----------EeecCC-CceEEEEEEEeccc-cCCCCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCC
Q psy14290 157 ----------LLEEGS-TGETVFFMKKLWTN-TVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGE 224 (332)
Q Consensus 157 ----------iLeq~~-~~~~L~Frrk~w~~-~~~~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd 224 (332)
.++||+ ..|.+..|+++|.. ..+...||+.++|+|.|++++|+.|.+|++.+.|.++|+++.++.||+
T Consensus 169 el~wld~~rtlreqgide~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshiq~g~ 248 (1003)
T KOG4261|consen 169 ELNWLDHSRTLREQGIDEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHIQFGP 248 (1003)
T ss_pred hhhhHHHhHHHHhcCccHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHHHHHHhccccccccCC
Confidence 125554 35788889888775 334557999999999999999999999999999999999999999999
Q ss_pred CchhhccHHHHhhhcCChhhhhccCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEee-cCCCCCc
Q psy14290 225 SKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQT-TEPNYPE 303 (332)
Q Consensus 225 ~~~~~~~~~~~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~-~~~~~p~ 303 (332)
++.+.+....++..++|+.+.+... +.+|...|+.+.++|..+|+..|.+.|+.++.||++||.|+.+ ++.+.-.
T Consensus 249 ~~~~k~k~~ld~kd~lpk~y~k~k~----ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklV 324 (1003)
T KOG4261|consen 249 HNEDKHKGFLDLKDFLPKEYVKQKG----EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLV 324 (1003)
T ss_pred chhhccccchhccccChHHHhcccc----chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCccccc
Confidence 9765443334678999999887654 5899999999999999999999999999999999999999865 4445456
Q ss_pred eEEEEEecCceEEEcCCCceeeeee
Q psy14290 304 MLLIAINKHGVSLIHPQTKISLDYK 328 (332)
Q Consensus 304 ~~~LgVn~~Gv~i~~~~~~~~l~~~ 328 (332)
+.+|||+.+.+-.+|..++++|..-
T Consensus 325 prlLgv~K~svmr~de~tk~il~ew 349 (1003)
T KOG4261|consen 325 PRLLGVTKESVMRVDEKTKEILQEW 349 (1003)
T ss_pred chhhhhhHHhhhhcchhhhhHhhhc
Confidence 7899999999999999999887643
No 9
>KOG3531|consensus
Probab=99.26 E-value=1.9e-12 Score=131.92 Aligned_cols=216 Identities=17% Similarity=0.259 Sum_probs=166.9
Q ss_pred eeeecCCeEEEEc---CChhhHHHHHHHHHHhhcccceeEEEEeecCCCCCCCeeeeccCCceEEeecCCCceEEEEEEE
Q psy14290 96 HRPIPGEEFTFQS---PNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKK 172 (332)
Q Consensus 96 ~~tl~g~~~~l~~---~~a~~~~elV~~~l~gL~e~s~f~lal~d~~~~~d~~~~L~~~kgd~iiLeq~~~~~~L~Frrk 172 (332)
+..+|+....|.. .-|+++.|.|+.+| +|-|-.+|++-++|.. ....||++.|..+..+.. .....+.|-.+
T Consensus 44 ~~~~~~~~~~f~~~~ka~g~vll~~vc~~l-nl~e~dyfglef~~~~---~~~~wld~~kpi~rqi~~-~~~~~~~~~vk 118 (1036)
T KOG3531|consen 44 CVMLDDTTEVFLVQHKAIGQVLLDQVCRHL-NLVECDYFGLEFQDIN---GNHCWLDLEKPILRQIRR-PKDVVLRFVVK 118 (1036)
T ss_pred EEEecCceeEEeecccccchHHHHHHHHhh-ceeeccccceeecccc---CceEEecccchHHHHhcC-ccchhhheeec
Confidence 4556666666665 57899999999999 5999999999999865 458899886654433321 23446777777
Q ss_pred eccccCCCCCCc-hhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhhhcCChhhhhccCHH
Q psy14290 173 LWTNTVPGKDRN-ADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKIQSST 251 (332)
Q Consensus 173 ~w~~~~~~~~d~-~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~~lP~~~~~~~~~e 251 (332)
+|.+. +..+.+ .+.-++-.|++.|+..|++.|....|+.|++...|.+.||+....+...-...+|+|.+ .
T Consensus 119 f~~p~-~~~l~ee~trylf~~q~k~dl~~G~l~c~d~ta~lLss~~~qse~gdf~~~~d~~~l~~~~~~p~q-------~ 190 (1036)
T KOG3531|consen 119 FFPPD-PIQLQEEYTRYLFALQIKRDLALGRLTCNDTTAALLSSHIVQSEIGDFDEYLDREHLAHTRYLPNQ-------D 190 (1036)
T ss_pred ccCCC-ccccchhHHHHhhhhccccccccCCccCCCchhhhhhcccccccCCchhccccceeeeeeecCchH-------H
Confidence 77653 333444 44557889999999999999999999999999999999999433322211245788875 4
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCCceEEEEEecCceEEEcCCCceeeeeeccc
Q psy14290 252 EWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTKISLDYKSIS 331 (332)
Q Consensus 252 ~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p~~~~LgVn~~Gv~i~~~~~~~~l~~~~~~ 331 (332)
..+++|..-|+++.|++|.+.-.+.|.+++++.+||..++.+++..|+ ++-++|-..||.|+...++ .+.|+
T Consensus 191 ~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~----~~~lav~hmgi~Vfr~~tk----inTf~ 262 (1036)
T KOG3531|consen 191 ELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGT----KINLAVAHMGILVFRGLTK----INTFN 262 (1036)
T ss_pred HHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccc----hHHHHHHhhhhHHHhccee----ccCCC
Confidence 467889999999999999999999999999999999999999998775 5778899999988876554 34455
Q ss_pred C
Q psy14290 332 W 332 (332)
Q Consensus 332 w 332 (332)
|
T Consensus 263 w 263 (1036)
T KOG3531|consen 263 W 263 (1036)
T ss_pred H
Confidence 4
No 10
>KOG3552|consensus
Probab=98.90 E-value=2.6e-09 Score=110.40 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=138.0
Q ss_pred cCCeEEEEcCChhhHHHHHHHHHHhhcc--cceeEEEEeecCCCCCCCeeeeccCCceEE-e-ec----------CCCce
Q psy14290 100 PGEEFTFQSPNAEDIRDLVVYFLEGLKK--RSSFVIALQDYKAPGEGSSFLSFHRGDLIL-L-EE----------GSTGE 165 (332)
Q Consensus 100 ~g~~~~l~~~~a~~~~elV~~~l~gL~e--~s~f~lal~d~~~~~d~~~~L~~~kgd~ii-L-eq----------~~~~~ 165 (332)
+|.+..|.=+..++++|+|-.+++.|.- ...|.+.|-.... . ++.++. | +| +..+.
T Consensus 192 NGQTKsFkfdatTtVkDVIltl~eKLsi~~iE~FsL~LE~~~s---------~-~rnkL~LLheqEsl~qV~~Rp~sHk~ 261 (1298)
T KOG3552|consen 192 NGQTKSFKFDATTTVKDVILTLLEKLSICCIELFSLVLEHVKS---------L-KRNKLTLLHEQESLAQVAARPGSHKL 261 (1298)
T ss_pred cCccceeeecccccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---------c-ccceeEeecHHHHHHHHHhCCcccce
Confidence 5666666667779999999999987753 3345555532211 1 222222 2 11 44577
Q ss_pred EEEEEEEeccccCC---CCCCchhhhhhHhhhhhchhccccccC--HHHHHHHHHHHHHHHhCCC-chh---hccHH--H
Q psy14290 166 TVFFMKKLWTNTVP---GKDRNADLIFHFHQELPKLLRGYHKCS--KEEAAKLAALVYRVRFGES-KQE---LQAIP--Q 234 (332)
Q Consensus 166 ~L~Frrk~w~~~~~---~~~d~~~~~l~y~Qv~~dil~G~~~~~--~e~a~~LAAl~~Q~~~Gd~-~~~---~~~~~--~ 234 (332)
+-.||.- |++-.+ ...|++.++.+|.|...||...||-.. .|-|..||||++|..-=.. .+. +.-+. .
T Consensus 262 RCLFRIt-FVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elALRLAALhm~~~~~a~~q~qKislKyIEkew 340 (1298)
T KOG3552|consen 262 RCLFRIT-FVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELALRLAALHMHQHALANNQAQKISLKYIEKEW 340 (1298)
T ss_pred eEEEEEE-eccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHHHHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence 8888864 444222 237999999999999999999999865 5899999999987653221 122 11111 1
Q ss_pred HhhhcCChhhhhccCHHHHHHHHHHHHHhccC-------CCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCCceEEE
Q psy14290 235 MLRELIPSDSIKIQSSTEWKRCIIAAYNQDAG-------MSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLI 307 (332)
Q Consensus 235 ~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g-------~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p~~~~L 307 (332)
-|++|+|..++..+...++++.|....+..+. ++..+||..||+++.+||.||...|.+....+...-..++|
T Consensus 341 GlE~Fvp~sll~~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se~~LL 420 (1298)
T KOG3552|consen 341 GLERFVPVSLLEGMKRKEIKKAISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESERVLL 420 (1298)
T ss_pred chhhcccHHHHhhhhHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhcccceeEEEE
Confidence 26789999999998888888877776665543 26679999999999999999999999876544221122333
Q ss_pred EEecCceE
Q psy14290 308 AINKHGVS 315 (332)
Q Consensus 308 gVn~~Gv~ 315 (332)
---+-||+
T Consensus 421 VgpryGiS 428 (1298)
T KOG3552|consen 421 VGPRYGIS 428 (1298)
T ss_pred eccccchh
Confidence 33345665
No 11
>KOG4371|consensus
Probab=98.30 E-value=4.5e-07 Score=95.16 Aligned_cols=208 Identities=14% Similarity=0.110 Sum_probs=146.1
Q ss_pred hcccceeEEEEeecCC---CCCCCeeeeccCCceEEe-ec-CCCceEEEEEEEeccccCCCCCCch---hhhhhHhhhhh
Q psy14290 125 LKKRSSFVIALQDYKA---PGEGSSFLSFHRGDLILL-EE-GSTGETVFFMKKLWTNTVPGKDRNA---DLIFHFHQELP 196 (332)
Q Consensus 125 L~e~s~f~lal~d~~~---~~d~~~~L~~~kgd~iiL-eq-~~~~~~L~Frrk~w~~~~~~~~d~~---~~~l~y~Qv~~ 196 (332)
++..-.|++.+....+ +.+...++++...++... .. +..|..+.+|..++....+...+.+ +..-+|.|.+.
T Consensus 543 iss~~~fGlS~~~dneh~~~e~~drLls~sasewk~~As~~~~PP~~~h~rv~~y~s~l~~is~~~akltrse~Y~~~q~ 622 (1332)
T KOG4371|consen 543 ISSHVFFGLSFLRDNEHYFIEDHDRLLSFSASEWKSVASVGVKPPYVLHLRVKFYPSILDFISTDVAKLTRSELYLQCQR 622 (1332)
T ss_pred cccceEeeceeecCCcchhhcchHHHHhcCchhhHHHhhcccCCCeEEEEEEEeccccCcchhhhhhhhhhhHHHHhhhH
Confidence 4445556665543221 113334555544444432 22 2467899999998887554444443 47789999999
Q ss_pred chhccccccCHHHHHHHHHHHHHHHhCCCchhh-ccHHHHhhhcCChhhhhccCHHHHHHHHHHHHHhccCCCHHHHHHH
Q psy14290 197 KLLRGYHKCSKEEAAKLAALVYRVRFGESKQEL-QAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKIT 275 (332)
Q Consensus 197 dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~-~~~~~~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s~~~A~~~ 275 (332)
+++.....-..|.+-+|||++.|++.|+..++. ..-..+...|.|.-+.......-+...+...|...-+.+..+|...
T Consensus 623 qvLeeq~V~~~da~f~laaFalqadsGNr~~n~~~gdysdP~hY~ps~yss~e~q~li~~~~p~~Hg~~~~t~aseah~k 702 (1332)
T KOG4371|consen 623 QVLEEQIVPKRDAAFELAAFALQADSGNRPPNPVIGDYSDPQHYLPSKYSSFEDQSLIKNILPELHGHYAGTRASEAHHK 702 (1332)
T ss_pred HHHhhcccccchhhhhHHhhhhhhhcCCCCCCccccccCChhhhcccceecccchhhhhhccccccCchhhcchhhccCc
Confidence 999999888889999999999999999986531 1111245678887766554444444455455555557788899999
Q ss_pred HHHHHhcCCCCCceEEEEEeec-------CCCCCceEEEEEecCceEEEcCCCceeeeeecccC
Q psy14290 276 FLKIIYRWPTFGSAFFEVKQTT-------EPNYPEMLLIAINKHGVSLIHPQTKISLDYKSISW 332 (332)
Q Consensus 276 yL~~~~~~p~yGs~~F~v~~~~-------~~~~p~~~~LgVn~~Gv~i~~~~~~~~l~~~~~~w 332 (332)
|+++++..|-|+++++.+-..+ ++....+.|+|...+||.++.+.....-..++|.|
T Consensus 703 YV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~prgIsi~~p~~~a~~~~a~fPp 766 (1332)
T KOG4371|consen 703 YVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPMPRGISIYEPQGGAREVIAEFPP 766 (1332)
T ss_pred ceecccCCCCccceeccccCCCCcccCcCcCCCCCCccccccccceeccccCCCCccccCCCCC
Confidence 9999999999999999986544 22334679999999999999998888777777777
No 12
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=98.08 E-value=5.8e-06 Score=62.67 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=49.9
Q ss_pred eeeecCCeEEEEcCChhhHHHHHHHHHH--hhcccceeEEEE-eecCCCCCCCeeeeccCCceEEeecCCCceEEEEEEE
Q psy14290 96 HRPIPGEEFTFQSPNAEDIRDLVVYFLE--GLKKRSSFVIAL-QDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKK 172 (332)
Q Consensus 96 ~~tl~g~~~~l~~~~a~~~~elV~~~l~--gL~e~s~f~lal-~d~~~~~d~~~~L~~~kgd~iiLeq~~~~~~L~Frrk 172 (332)
|.++||.+.++..+..++++|+++.+++ ||++..+|++++ .+.. +...||...+.-...+.....++.|+||++
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~---~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKD---GEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTT---SSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCC---CcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 5678988888887555555555554444 688999999999 4432 567898876432222222236899999999
Q ss_pred ecc
Q psy14290 173 LWT 175 (332)
Q Consensus 173 ~w~ 175 (332)
+|.
T Consensus 78 fy~ 80 (80)
T PF09379_consen 78 FYP 80 (80)
T ss_dssp S--
T ss_pred ECC
Confidence 874
No 13
>KOG3727|consensus
Probab=97.76 E-value=5.2e-05 Score=75.67 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=77.5
Q ss_pred hcCChhhhhccCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCCceEEEEEecCceEEE
Q psy14290 238 ELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLI 317 (332)
Q Consensus 238 ~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p~~~~LgVn~~Gv~i~ 317 (332)
.|+.+++.+.....+..++|.++|+.++-||-.||+..|++.=++||-||.++|=|+-.... .+=+|||.-+-+..+
T Consensus 504 ~~vSPr~~rk~ksKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfivRFkGsr---KeEllGVA~NRLirm 580 (664)
T KOG3727|consen 504 CYVSPRYVRKLKSKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSR---KEELLGVAYNRLIRM 580 (664)
T ss_pred hhcCHHHHHHHhhHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEEEecCcc---hHHHHhhhhhheeee
Confidence 46666666666667799999999999999999999999999999999999999998864332 355789998889999
Q ss_pred cCCCceeeeeeccc
Q psy14290 318 HPQTKISLDYKSIS 331 (332)
Q Consensus 318 ~~~~~~~l~~~~~~ 331 (332)
|..++..+.+-.|+
T Consensus 581 DlatGd~iKTWRfs 594 (664)
T KOG3727|consen 581 DLATGDHIKTWRFS 594 (664)
T ss_pred ecccCCceeeeeec
Confidence 99999999887764
No 14
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=97.71 E-value=0.00015 Score=56.03 Aligned_cols=81 Identities=23% Similarity=0.257 Sum_probs=60.7
Q ss_pred hHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhhhcCChhhhhccCHHHHHHHHHHHHHhccCCCH
Q psy14290 190 HFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSP 269 (332)
Q Consensus 190 ~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s~ 269 (332)
-|.++...|..-.-..+.|+-.+|=||--|+..||++...|...+ ...+.-..+|+++.|||+
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d-----------------~~~~~K~~AW~~l~~ms~ 66 (85)
T cd00435 4 EFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFD-----------------LKGRAKWDAWNSLKGMSK 66 (85)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCccc-----------------HhhHHHHHHHHHcCCCCH
Confidence 466777777666677889999999999999999999643332211 011233568999999999
Q ss_pred HHHHHHHHHHHhc-CCCCC
Q psy14290 270 EDAKITFLKIIYR-WPTFG 287 (332)
Q Consensus 270 ~~A~~~yL~~~~~-~p~yG 287 (332)
++|+..|++++.+ +|-||
T Consensus 67 ~eA~~~YV~~~~~l~~~~~ 85 (85)
T cd00435 67 EDAMKAYIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 9999999999954 47776
No 15
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=97.46 E-value=0.00021 Score=55.86 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=30.0
Q ss_pred CCCceEEEEEeecCCCCCceEEEEEecCceEEEcCCC
Q psy14290 285 TFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQT 321 (332)
Q Consensus 285 ~yGs~~F~v~~~~~~~~p~~~~LgVn~~Gv~i~~~~~ 321 (332)
+||+.+|.|++..+ .+++|||++.||.+++.+.
T Consensus 1 ~YGv~~~~vkd~~g----~~~~lGV~~~Gi~v~~~~~ 33 (92)
T cd00836 1 MYGVDLHPVKDKKG----TELLLGVTAEGILVYDDGT 33 (92)
T ss_pred CCCeeeEEEECCCC----CeEEEEEeCCCcEEecCCC
Confidence 79999999999776 4799999999999999876
No 16
>KOG4257|consensus
Probab=97.34 E-value=0.00049 Score=70.28 Aligned_cols=153 Identities=17% Similarity=0.288 Sum_probs=117.8
Q ss_pred CceEEEEEEEecccc-C-CCCCCchhhhhhHhhhhhchhcccc-ccCHHHHHHHHHHHHHHHhCCCchh-------hccH
Q psy14290 163 TGETVFFMKKLWTNT-V-PGKDRNADLIFHFHQELPKLLRGYH-KCSKEEAAKLAALVYRVRFGESKQE-------LQAI 232 (332)
Q Consensus 163 ~~~~L~Frrk~w~~~-~-~~~~d~~~~~l~y~Qv~~dil~G~~-~~~~e~a~~LAAl~~Q~~~Gd~~~~-------~~~~ 232 (332)
..|++-.|.++-... + ...+|..+.-.+|.|+++|+..-.- .++.|.|++||+|-+.-.|-++.-. .+.+
T Consensus 90 ~ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vrr~Fk~~~~na~~kksh~e~l 169 (974)
T KOG4257|consen 90 DEWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVRRDFKEHQHNAPGKKSHLEDL 169 (974)
T ss_pred hhheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCcccCCCccccHHHH
Confidence 457887887663321 1 1236778888999999999997653 4677899999999999888665311 1111
Q ss_pred HH--HhhhcCChhhhhccCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCCCceEEEEEe
Q psy14290 233 PQ--MLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAIN 310 (332)
Q Consensus 233 ~~--~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~~~p~~~~LgVn 310 (332)
.+ -+++|+|+.+.....+..++..|.+.+++....+++|.-..|..++...-.|-...|.+.-.++.+ -.+.|.|.
T Consensus 170 ekevglksffPksl~~~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~s~Wn--isveLvvG 247 (974)
T KOG4257|consen 170 EKEVGLKSFFPKSLHNPFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLGSGWN--ISVELVVG 247 (974)
T ss_pred HHHhhHHhhChHhhhcccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecccccc--eeEEEEec
Confidence 11 257899999999888999999999999999999999999999999988878888888887766654 45677787
Q ss_pred cC-ceEEE
Q psy14290 311 KH-GVSLI 317 (332)
Q Consensus 311 ~~-Gv~i~ 317 (332)
.+ ||+-+
T Consensus 248 Ph~Gisy~ 255 (974)
T KOG4257|consen 248 PHTGISYL 255 (974)
T ss_pred Ccccceec
Confidence 77 98755
No 17
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=97.30 E-value=0.00069 Score=52.48 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=50.3
Q ss_pred Hhhhhhchhccc--cccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhhhcCChhhhhccCHHHHHHHHHHHHHhccCCC
Q psy14290 191 FHQELPKLLRGY--HKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMS 268 (332)
Q Consensus 191 y~Qv~~dil~G~--~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s 268 (332)
|..+..-+.... ...+.++-++|-||--|+..||++...|... +.....=.++|++++|||
T Consensus 5 F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~-----------------d~~~~~K~~AW~~l~gms 67 (87)
T PF00887_consen 5 FEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRPGFF-----------------DIEGRAKWDAWKALKGMS 67 (87)
T ss_dssp HHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CTTTT-----------------CHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCCcch-----------------hHHHHHHHHHHHHccCCC
Confidence 344444444333 4789999999999999999999964333221 011122346899999999
Q ss_pred HHHHHHHHHHHHhc
Q psy14290 269 PEDAKITFLKIIYR 282 (332)
Q Consensus 269 ~~~A~~~yL~~~~~ 282 (332)
+++|+..|++++.+
T Consensus 68 ~~eA~~~Yi~~v~~ 81 (87)
T PF00887_consen 68 KEEAMREYIELVEE 81 (87)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999854
No 18
>PTZ00458 acyl CoA binding protein; Provisional
Probab=97.11 E-value=0.0019 Score=50.36 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=56.6
Q ss_pred Hhhhhhchhcccc--ccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhhhcCChhhhhccCHHHHHHHHHHHHHhccCCC
Q psy14290 191 FHQELPKLLRGYH--KCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMS 268 (332)
Q Consensus 191 y~Qv~~dil~G~~--~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s 268 (332)
|.++...|..-.- +++.++..+|=||--|+..||++...|...... .... ..+|.++.|||
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~------------~raK-----w~AW~~l~~ms 67 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQ------------DRKK-----YEAWKSIENLN 67 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHH------------HHHH-----HHHHHHcCCCC
Confidence 6666666654333 678999999999999999999964333321110 1122 34899999999
Q ss_pred HHHHHHHHHHHHhcC-CCC
Q psy14290 269 PEDAKITFLKIIYRW-PTF 286 (332)
Q Consensus 269 ~~~A~~~yL~~~~~~-p~y 286 (332)
+++|+..|++++.++ |-+
T Consensus 68 ~~eA~~~YI~l~~~l~~~w 86 (90)
T PTZ00458 68 REDAKKRYVEIVTELFPNW 86 (90)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 999999999999655 544
No 19
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=96.90 E-value=0.0024 Score=47.60 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=61.8
Q ss_pred hhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhhhcCChhhhhccCHHHHHHHHHHHHHhccCC
Q psy14290 188 IFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGM 267 (332)
Q Consensus 188 ~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~ 267 (332)
...|.|+..+|-+=.-.-+.++..+|-||--|+..||.+.+.|.+.....+| =.++|..++|.
T Consensus 3 s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~-----------------K~eAW~~LKGk 65 (87)
T COG4281 3 STRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRY-----------------KYEAWAGLKGK 65 (87)
T ss_pred hhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccch-----------------hHHHHhhccCc
Confidence 3568999999987555566789999999999999999977666554322221 24578899999
Q ss_pred CHHHHHHHHHHHHhcC
Q psy14290 268 SPEDAKITFLKIIYRW 283 (332)
Q Consensus 268 s~~~A~~~yL~~~~~~ 283 (332)
|+++|+.+|+.++..+
T Consensus 66 sqedA~qeYialVeeL 81 (87)
T COG4281 66 SQEDARQEYIALVEEL 81 (87)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999998655
No 20
>KOG3784|consensus
Probab=96.30 E-value=0.081 Score=51.43 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=83.0
Q ss_pred eeeecCCeEEEEc---CChhhHHHHHHHHHHhhcccceeEEEEeecCCCCCCCeeeeccCCceE----Eeec-CCCceEE
Q psy14290 96 HRPIPGEEFTFQS---PNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLI----LLEE-GSTGETV 167 (332)
Q Consensus 96 ~~tl~g~~~~l~~---~~a~~~~elV~~~l~gL~e~s~f~lal~d~~~~~d~~~~L~~~kgd~i----iLeq-~~~~~~L 167 (332)
+..++|+.-++.+ +++..+.+.|+.=+ ||.......++++-.....+.+..+.-+-.|.- .+-. ......|
T Consensus 112 v~lpng~~i~i~~~~s~tt~~vl~~v~~kl-~l~~e~i~~f~lFlvr~~~~~~ls~vRkl~~fE~p~vs~t~~~~~~~~l 190 (407)
T KOG3784|consen 112 VFLPNGEKITINCLVSDTASLVLKSVCRKL-GLPDELIGYFGLFLVRDNDPGNLSFVRKLADFESPYVSLTSNYVSACEL 190 (407)
T ss_pred EEccCCceEEEEEEecccHHHHHHHHHhhc-CCchHhhhheeeeEEeccCCCcceeeeeecccccccccccccccccccc
Confidence 4455666555554 56666666666655 565433333444332221111111111101100 0100 1122347
Q ss_pred EEEEEeccccCC--CCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhhhcCChhhh
Q psy14290 168 FFMKKLWTNTVP--GKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSI 245 (332)
Q Consensus 168 ~Frrk~w~~~~~--~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~~lP~~~~ 245 (332)
..|+-.|-...+ ..++.+..+|+|.|+..|+-.|....+.++--+|=|++-|-
T Consensus 191 ~LRk~~~ds~~e~~L~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~slq~q~------------------------- 245 (407)
T KOG3784|consen 191 LLRKWYWDSSRERALMDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSLQEEE------------------------- 245 (407)
T ss_pred eeeeeeecchhhhHHhcCchHHHHHHHHHHHHHhcCceeechhhHHHHHHHHHhh-------------------------
Confidence 777766665332 22556778899999999999999887776544555553322
Q ss_pred hccCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCceEEEE
Q psy14290 246 KIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEV 293 (332)
Q Consensus 246 ~~~~~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v 293 (332)
-+.+||+.|+.++.||.--|.-
T Consensus 246 --------------------------~~~~fL~m~R~l~~Y~~l~f~~ 267 (407)
T KOG3784|consen 246 --------------------------SMKEFLELARTLEGYGYLIFDP 267 (407)
T ss_pred --------------------------hHHHHHHHHHhhccCCeEecCc
Confidence 2557899999999999999973
No 21
>KOG4335|consensus
Probab=96.13 E-value=0.0019 Score=64.16 Aligned_cols=158 Identities=12% Similarity=0.128 Sum_probs=110.8
Q ss_pred EEEEEEeccccCC--CCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhc----cHHHHhhhcC
Q psy14290 167 VFFMKKLWTNTVP--GKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQ----AIPQMLRELI 240 (332)
Q Consensus 167 L~Frrk~w~~~~~--~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~----~~~~~l~~~l 240 (332)
+..++-++..-.. ..+|+...+++|.-++.+++.|.|.-..+..+.+|++.++.-++.+..+.. ...+.|++..
T Consensus 328 ~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~vl~lEelk~~~ 407 (558)
T KOG4335|consen 328 CELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLLVLNLEELKSWD 407 (558)
T ss_pred hhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeeehhhhhcccceeeccccccchhcccHHHhcccC
Confidence 4445444444222 338899999999999999999999999999999999999999888753321 1123444444
Q ss_pred ChhhhhccCHHHHHHH-HHHHHHhc---cCCCHHHHH--HHHHHHHhcCCCCCceEEEEEeecCCC--CC--ceEEEEEe
Q psy14290 241 PSDSIKIQSSTEWKRC-IIAAYNQD---AGMSPEDAK--ITFLKIIYRWPTFGSAFFEVKQTTEPN--YP--EMLLIAIN 310 (332)
Q Consensus 241 P~~~~~~~~~e~w~~~-I~~~~~~~---~g~s~~~A~--~~yL~~~~~~p~yGs~~F~v~~~~~~~--~p--~~~~LgVn 310 (332)
|-.-.+ ..+..|.+. +...|+.. .|++.+.|+ ..+++.|-..|.||++++.-....+++ -+ .+..|+||
T Consensus 408 ~t~~~~-~~~~~wlef~~~~e~kn~n~~~gVs~ema~l~~~~~e~c~ei~~~ga~~~~pqd~ak~SpSD~~~~~~~vqv~ 486 (558)
T KOG4335|consen 408 HTSPEE-EEPILWLEFDIDSEYKNVNKLLGVSSEMAELMSSLIEYCIEIPSQGAEPAGPQDSAKGSPSDHSSSPAPVQVN 486 (558)
T ss_pred CCCChh-hcchhhhhhhhhccccCccceechhHHHHHHHHHHHHHheeehhccccccCcccccCCCCCcccccccccccc
Confidence 332222 223446665 77777754 578888775 579999999999999999776543221 11 46789999
Q ss_pred cCceEEEcCCCceeee
Q psy14290 311 KHGVSLIHPQTKISLD 326 (332)
Q Consensus 311 ~~Gv~i~~~~~~~~l~ 326 (332)
+|++++..++..+..
T Consensus 487 -k~l~~ls~q~~~~~s 501 (558)
T KOG4335|consen 487 -KGLPKLSRQGSVVSS 501 (558)
T ss_pred -ccchhhccchhHHHH
Confidence 999999988876544
No 22
>KOG0817|consensus
Probab=95.62 E-value=0.039 Score=46.68 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=61.0
Q ss_pred hHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHHHhhhcCChhhhhccCHHHHHHHHHHHHHhccCCCH
Q psy14290 190 HFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSP 269 (332)
Q Consensus 190 ~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s~ 269 (332)
-|..+...+..=.=-.+.|+.++|=||-=|+..||++...|.+.... ...+| ++|.++.||++
T Consensus 8 ~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~------------~k~Kw-----~AW~~l~~~s~ 70 (142)
T KOG0817|consen 8 KFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEE------------GKAKW-----QAWNSLGGMSK 70 (142)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHH------------HHHHH-----HHHHhcCCCCH
Confidence 34444444332222267789999999999999999976555442211 12334 45999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCceEEEEE
Q psy14290 270 EDAKITFLKIIYRW-PTFGSAFFEVK 294 (332)
Q Consensus 270 ~~A~~~yL~~~~~~-p~yGs~~F~v~ 294 (332)
++|+..|++++.++ |-|++.-=...
T Consensus 71 ~eA~~~Yv~~~~~l~~~~~~~~~~~~ 96 (142)
T KOG0817|consen 71 EEAMEAYVEKVEELIPKYGAEAETEE 96 (142)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999555 88888764433
No 23
>KOG4229|consensus
Probab=94.93 E-value=0.0041 Score=67.75 Aligned_cols=213 Identities=11% Similarity=0.080 Sum_probs=129.9
Q ss_pred eeeecCCeEEEEcCChhhHHHHHHHHHHhhcccceeEEEEeecCCC--CCCCeeee-ccCCceEEeecC----CCceEEE
Q psy14290 96 HRPIPGEEFTFQSPNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAP--GEGSSFLS-FHRGDLILLEEG----STGETVF 168 (332)
Q Consensus 96 ~~tl~g~~~~l~~~~a~~~~elV~~~l~gL~e~s~f~lal~d~~~~--~d~~~~L~-~~kgd~iiLeq~----~~~~~L~ 168 (332)
++.++|...+.+.++++...|.+....+....-+.+ ++++.... .+...+.. .........+|+ ..+++++
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~ 692 (1062)
T KOG4229|consen 615 VTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRP--SLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLS 692 (1062)
T ss_pred hhhccccccccccccccchHHHHHhhhccccccCCh--hhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhh
Confidence 677888888888888888888888755533222222 44443321 01111110 011111222443 3578999
Q ss_pred EEEEeccccCCCCCCchhhhhhHhhhhhchhccccccCHH-HHHHHHHHHHHHHhCCCchhhccHHHHhhhcCChhhhhc
Q psy14290 169 FMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKE-EAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKI 247 (332)
Q Consensus 169 Frrk~w~~~~~~~~d~~~~~l~y~Qv~~dil~G~~~~~~e-~a~~LAAl~~Q~~~Gd~~~~~~~~~~~l~~~lP~~~~~~ 247 (332)
++.....+|+.+.. ....++|.|++.....|.|+|+.+ ++++.|.-++-++.|-... .......+..++|......
T Consensus 693 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 769 (1062)
T KOG4229|consen 693 SRGSTATPSHDRPG--RKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMK-SERLTTLLPRYIPDPCLDP 769 (1062)
T ss_pred hcccccCCCCCCcc--ccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccch-hhhhcccccccCccccCCc
Confidence 99888888765433 677899999999999999999965 5555555554444432111 1122234567777776666
Q ss_pred cCHHHHHHHHHHHHHhcc--CCC--HHHHHHHHHHH-HhcCCCCCceEEEEEeecCCCCC-ceEEEEEecCc
Q psy14290 248 QSSTEWKRCIIAAYNQDA--GMS--PEDAKITFLKI-IYRWPTFGSAFFEVKQTTEPNYP-EMLLIAINKHG 313 (332)
Q Consensus 248 ~~~e~w~~~I~~~~~~~~--g~s--~~~A~~~yL~~-~~~~p~yGs~~F~v~~~~~~~~p-~~~~LgVn~~G 313 (332)
...+.|.+.+...|.+-+ +.. +..-+..-... ..+||+++..+++-.+..+..++ ..+...++..|
T Consensus 770 ~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~ 841 (1062)
T KOG4229|consen 770 VRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTG 841 (1062)
T ss_pred cccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchh
Confidence 677889888888887643 211 11111122222 26899999999987665666665 56778888888
No 24
>KOG4371|consensus
Probab=94.67 E-value=0.018 Score=61.62 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=77.8
Q ss_pred eeeecCCeEEEEcCChhhHHHHHHHHHHhhcccceeEEEEeecCCCCCCCeeeec-cC----Cce---E----EeecCC-
Q psy14290 96 HRPIPGEEFTFQSPNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSF-HR----GDL---I----LLEEGS- 162 (332)
Q Consensus 96 ~~tl~g~~~~l~~~~a~~~~elV~~~l~gL~e~s~f~lal~d~~~~~d~~~~L~~-~k----gd~---i----iLeq~~- 162 (332)
+.|++|+.+...+..-+++-++-- +..+..-|++|..-.. .-.|++. .| |.+ . .|+...
T Consensus 42 ~~t~~~~S~~~e~s~~T~~hdv~~----~~~d~elfglA~~~r~----ey~f~dp~~k~skyg~k~~r~s~~h~ld~~~r 113 (1332)
T KOG4371|consen 42 TSTSSGNSTQKESSPFTDFHDVPP----PPVDPELFGLAQNRRE----EYSFEDPFLKESKYGGKGSRLSQSHRLDETFR 113 (1332)
T ss_pred EEeecCceeeeecccccccccCCC----CCCcccccchhhhhcc----cccccChhhhhhhhcCCCCccccccccCccCC
Confidence 466777777766665555444433 2334555666654322 1122221 10 100 0 122222
Q ss_pred CceEEEEEEEeccccCCCCCCchhhhhhHhhhhhchhccccc--cCHHHHHHHHHHHHHHHhCCCc
Q psy14290 163 TGETVFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHK--CSKEEAAKLAALVYRVRFGESK 226 (332)
Q Consensus 163 ~~~~L~Frrk~w~~~~~~~~d~~~~~l~y~Qv~~dil~G~~~--~~~e~a~~LAAl~~Q~~~Gd~~ 226 (332)
.-..|+||..+|....-...++...+-+|+|++++++.--.| .+.+.+..+|+|++|.++||..
T Consensus 114 p~l~l~frv~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr~~~e~a~~~~a~lalq~d~g~~~ 179 (1332)
T KOG4371|consen 114 PELSLEFRVSGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPRPAPEKAAEEYARLALQNDFGEEE 179 (1332)
T ss_pred eeEEEEEEEEEeecCceeccCCCCccchhhhhhhhhhccccCCcchHHHHHHHHhhhhcCccCcCC
Confidence 336899999999985444567788999999999999975544 5668999999999999999874
No 25
>KOG4335|consensus
Probab=92.60 E-value=0.16 Score=50.89 Aligned_cols=160 Identities=16% Similarity=0.249 Sum_probs=107.1
Q ss_pred EEEEEEEeccccCCCC--CCchhhhhhHhhhhhchhccc--cccCHHHHHHHHHH-HHHHHhCCCchhh---ccH--HHH
Q psy14290 166 TVFFMKKLWTNTVPGK--DRNADLIFHFHQELPKLLRGY--HKCSKEEAAKLAAL-VYRVRFGESKQEL---QAI--PQM 235 (332)
Q Consensus 166 ~L~Frrk~w~~~~~~~--~d~~~~~l~y~Qv~~dil~G~--~~~~~e~a~~LAAl-~~Q~~~Gd~~~~~---~~~--~~~ 235 (332)
.+-||++.++...... -++.-..+.|.-++..++.++ ++|+.++..+++|+ ++-.++|++.+-- ..+ .+.
T Consensus 199 ~~~~~rn~~~~~~re~~~~~ee~a~~n~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~~~~gir~~~~ 278 (558)
T KOG4335|consen 199 FLQFRRNVFFPKGRELQIIDEEVARLNYEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQPVRPAACGIRLSEK 278 (558)
T ss_pred chHHhhhhhcccCcchhhhHHHHHHHhHHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCccccchhhhcchHHH
Confidence 4566776666532121 223345688999999999999 88999999999999 8999999996531 122 256
Q ss_pred hhhcCChhhhhc-------------cCHHHHHHHHHHHHHhccCCC-H--HHHH-----HHHHHHHhcCCCCCceEEEE-
Q psy14290 236 LRELIPSDSIKI-------------QSSTEWKRCIIAAYNQDAGMS-P--EDAK-----ITFLKIIYRWPTFGSAFFEV- 293 (332)
Q Consensus 236 l~~~lP~~~~~~-------------~~~e~w~~~I~~~~~~~~g~s-~--~~A~-----~~yL~~~~~~p~yGs~~F~v- 293 (332)
+.+|+|..++.. .....| ..|.++|++..-.+ . -+++ ..+++.+-+-|+||.-+|+-
T Consensus 279 ~qs~f~~w~cs~~lslqlk~~h~p~~~v~~w-p~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~ea 357 (558)
T KOG4335|consen 279 LQSFFPAWLCSRGLSLQLKLRHRPARAVPGW-PELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFHEA 357 (558)
T ss_pred HHHHhHHHHhhcchhhhhhhccCCccccccc-HHHHHHHhcCCccCCccchhhhhcccchhhhHhhhhchhhhhhhhhhh
Confidence 778888877642 112223 34778888774332 1 1222 26888889999999999964
Q ss_pred Eeec--C--CCCC-ceEEEE-EecCceEEEcCCCceeee
Q psy14290 294 KQTT--E--PNYP-EMLLIA-INKHGVSLIHPQTKISLD 326 (332)
Q Consensus 294 ~~~~--~--~~~p-~~~~Lg-Vn~~Gv~i~~~~~~~~l~ 326 (332)
+++. | -..+ ..+.+| ++-.|+++.+...+..+.
T Consensus 358 R~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~ 396 (558)
T KOG4335|consen 358 RDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLL 396 (558)
T ss_pred hhhhhccccccCCceeeehhhhhcccceeeccccccchh
Confidence 3221 1 1112 468899 999999999986665443
No 26
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=90.80 E-value=0.2 Score=38.63 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=21.9
Q ss_pred ceEEEEEecCceEEEcCCCceeeeeecccC
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYKSISW 332 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~~~~w 332 (332)
.+++|||+..||.+++.+.+.. ...|+|
T Consensus 5 ~~~~LGv~~~GI~i~~~~~~~~--~~~f~W 32 (90)
T PF09380_consen 5 SPLWLGVSPRGISIYRDNNRIS--TQFFPW 32 (90)
T ss_dssp BEEEEEEESSEEEEEETTBSSS--SEEEEG
T ss_pred CEEEEEEcCCEeEEEeCCCccc--ceeeeh
Confidence 5799999999999998877653 444554
No 27
>KOG3878|consensus
Probab=80.65 E-value=1.9 Score=41.20 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=51.2
Q ss_pred cccCHHHHHHHHHHHHHHHhCCCchh-hccHHHHhhhcCChhhhhccCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-
Q psy14290 203 HKCSKEEAAKLAALVYRVRFGESKQE-LQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKII- 280 (332)
Q Consensus 203 ~~~~~e~a~~LAAl~~Q~~~Gd~~~~-~~~~~~~l~~~lP~~~~~~~~~e~w~~~I~~~~~~~~g~s~~~A~~~yL~~~- 280 (332)
++.+-|+-++|-||--|+.+|.++++ .|.+ ..|. .+ -+....+|+.+..||.++|+..|+.++
T Consensus 51 ~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~-G~lD-v~-------------GnDr~~~W~~LG~~sre~AM~~FV~Lld 115 (469)
T KOG3878|consen 51 IHLSYEDNLKLIALKKQVALGPFNTDRAPAL-GVLD-VI-------------GNDRQQHWQLLGEISREQAMEGFVDLLD 115 (469)
T ss_pred cCCChhhhhhhhhhHhhhhcCCCCcccCccc-ceee-cc-------------cChHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 57788999999999999999999854 2322 2211 11 123567899999999999999999999
Q ss_pred hcCCCC
Q psy14290 281 YRWPTF 286 (332)
Q Consensus 281 ~~~p~y 286 (332)
+-.|.|
T Consensus 116 r~C~~F 121 (469)
T KOG3878|consen 116 RMCSAF 121 (469)
T ss_pred hcchhh
Confidence 444544
No 28
>KOG3727|consensus
Probab=77.70 E-value=1.4 Score=44.89 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=39.9
Q ss_pred CCCCchhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHh
Q psy14290 180 GKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRF 222 (332)
Q Consensus 180 ~~~d~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~ 222 (332)
+.-|.+.++.+|+|++-+++..++.|+.|++..+||++.|+.+
T Consensus 273 pkyd~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~~ 315 (664)
T KOG3727|consen 273 PKYDQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVNH 315 (664)
T ss_pred cccceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 4467789999999999999999999999999999999999976
No 29
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=74.70 E-value=4.9 Score=33.46 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=30.0
Q ss_pred cCCCCCceEEEEEecCceEEEcCCCceeeeeecccC
Q psy14290 297 TEPNYPEMLLIAINKHGVSLIHPQTKISLDYKSISW 332 (332)
Q Consensus 297 ~~~~~p~~~~LgVn~~Gv~i~~~~~~~~l~~~~~~w 332 (332)
++..++..+.+-|+..||.+.|..+++.+..|++++
T Consensus 34 ~~~~w~q~~~lkV~~~~v~L~D~~~k~~le~yPl~~ 69 (131)
T PF08416_consen 34 KGRIWPQEMHLKVSDQGVTLTDIETKEFLEHYPLSS 69 (131)
T ss_dssp SS-SS-EEEEEEEETTEEEEEESSTSSECEEEECCC
T ss_pred CCCcccEEEEEEEeCCeEEEEECcccchhhhCCHhH
Confidence 455567899999999999999999999999988764
No 30
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=69.22 E-value=6.2 Score=33.28 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=25.0
Q ss_pred ceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
..++|.||.+||.++|+.|+.++...++
T Consensus 53 ~kV~L~IS~dGi~v~D~~T~~ll~~~~i 80 (139)
T cd01215 53 TRITLQINIDGIKVLDEKTGAVLHHHPV 80 (139)
T ss_pred ceEEEEEccCCEEEEcCCCCcEEEeece
Confidence 4799999999999999999999886654
No 31
>KOG3531|consensus
Probab=66.42 E-value=2.8 Score=44.72 Aligned_cols=109 Identities=9% Similarity=-0.162 Sum_probs=84.2
Q ss_pred chhhhhhHhhhhhchhccccccCHHHHHHHHHHHHHHHhCCCchhhccHHH--HhhhcCChhhhhccCHHHHHHHHHHHH
Q psy14290 184 NADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQ--MLRELIPSDSIKIQSSTEWKRCIIAAY 261 (332)
Q Consensus 184 ~~~~~l~y~Qv~~dil~G~~~~~~e~a~~LAAl~~Q~~~Gd~~~~~~~~~~--~l~~~lP~~~~~~~~~e~w~~~I~~~~ 261 (332)
.......|+|.+++...|.|-|+.|.+..-+.+..|+=-|+...+ .+.. .+.++-|+.+.-.+. +.+...+
T Consensus 269 lsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk~cve~h--~ffr~~~~~~~k~k~~~~S~g-----ssfrysg 341 (1036)
T KOG3531|consen 269 LSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWKICVEHH--AFFRLVEEPKPKPKTVFFSKG-----SSFRYSG 341 (1036)
T ss_pred HHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHhcccccc--chhhhhcccCCCCCceeeccc-----chhhhcC
Confidence 345668999999999999999999999999999999988877443 2211 233444444332222 4577788
Q ss_pred HhccCCCHHHHHHHHHHHHhcCCCCCceEEEEEeecCC
Q psy14290 262 NQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEP 299 (332)
Q Consensus 262 ~~~~g~s~~~A~~~yL~~~~~~p~yGs~~F~v~~~~~~ 299 (332)
++.+++.+-.++...++...+-+.||+........+++
T Consensus 342 rtqkq~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~ 379 (1036)
T KOG3531|consen 342 RTQKQLLDYVREGGKKREPFERKHSKSHSTRRGLYSSP 379 (1036)
T ss_pred cchhccchhhhhcccccchhhcccccccccchhhccCC
Confidence 88999999999999999999999999999887776664
No 32
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=61.08 E-value=12 Score=30.84 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.8
Q ss_pred ceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
.++.|-|+..||.++|+++++++..+++
T Consensus 45 ~~V~L~IS~~gi~i~d~~t~~~l~~~~i 72 (132)
T cd01267 45 PKVELDISIKGVKIIDPKTKTVLHGHPL 72 (132)
T ss_pred CeEEEEEEcCcEEEEeCCCCcEEEEccc
Confidence 4799999999999999999999886654
No 33
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=60.26 E-value=16 Score=29.74 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=26.0
Q ss_pred CCceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 301 YPEMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 301 ~p~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
.+.++.|.|+..||.++++++++++..+++
T Consensus 50 ~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i 79 (140)
T PF00640_consen 50 KPQKVTLNVSSDGIKVIDPDTGEVLMSHPI 79 (140)
T ss_dssp TSEEEEEEEETTEEEEEETTTTCEEEEEEG
T ss_pred cCeEEEEEEcCCeEEEecCccccccccCCc
Confidence 346899999999999999999999886654
No 34
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=58.82 E-value=17 Score=28.81 Aligned_cols=29 Identities=31% Similarity=0.553 Sum_probs=25.6
Q ss_pred CceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 302 PEMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 302 p~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
+.++.|-|+..||.++|.++++++..+++
T Consensus 41 ~~~v~l~vs~~gv~l~d~~~~~~l~~~~l 69 (123)
T cd00934 41 GQKVILSVSSDGVKLIDPKTKEVLASHPI 69 (123)
T ss_pred CCEEEEEEEcCcEEEEeCCCCcEEEeecc
Confidence 45899999999999999999998887665
No 35
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=58.34 E-value=14 Score=31.14 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=24.6
Q ss_pred ceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
..++|-|+.+||.++|+.|++++...++
T Consensus 50 ~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i 77 (138)
T cd01268 50 VKAVLWVSGDGLRVVDEKTKGLIVDQTI 77 (138)
T ss_pred CEEEEEEecCcEEEEecCCCcEEEEEeE
Confidence 4699999999999999999999886544
No 36
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=56.33 E-value=17 Score=30.05 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.6
Q ss_pred ceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
..+.|-|+.+||.++|+.+++++..+++
T Consensus 41 ~~V~L~IS~~Gv~v~d~~tk~~i~~~~i 68 (127)
T cd01274 41 PRVTLDLTCNGVKFIDETFKTLIDGHGI 68 (127)
T ss_pred CEEEEEEeCCeEEEEECCCCeEEEEeee
Confidence 4799999999999999999998886543
No 37
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=52.22 E-value=25 Score=28.43 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=25.8
Q ss_pred CCceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 301 YPEMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 301 ~p~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
.+.++.|-|+..||.+.+..++.++..+++
T Consensus 42 ~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l 71 (134)
T smart00462 42 EPQKVILSISSRGVKLIDEDTKAVLHEHPL 71 (134)
T ss_pred CCCEEEEEEECCcEEEEECCCCeEEEEccc
Confidence 346899999999999999999988886654
No 38
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=52.17 E-value=20 Score=30.06 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.7
Q ss_pred ceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
.++.|-|+.+||.++|+.+++++...++
T Consensus 55 ~~V~L~IS~~GI~v~d~~t~~~~~~~~i 82 (142)
T cd01273 55 QKVEIRISIDGVIIAEPKTKAPMHTFPL 82 (142)
T ss_pred cEEEEEEECCeEEEEEcCCCcEEEEcCc
Confidence 4799999999999999999999886553
No 39
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=51.17 E-value=23 Score=29.30 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=25.2
Q ss_pred ceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
..+.+.|+..||.+++|+++.++...+|
T Consensus 43 rtm~~~I~~~~v~lispdtK~vl~~k~f 70 (129)
T cd01269 43 RTMLFQVGRFEINLISPDTKSVVLEKNF 70 (129)
T ss_pred cEEEEEEeccceEEEcCCcceEEEecCc
Confidence 3589999999999999999999987766
No 40
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=50.23 E-value=24 Score=29.02 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.8
Q ss_pred ceEEEEEecCceEEEcCCCceeeeeecc
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYKSI 330 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~~~ 330 (332)
.++.|-|+..||.++|+++++++...++
T Consensus 40 ~~v~l~Vs~~~l~l~d~~t~~~l~~~~i 67 (123)
T cd01216 40 KDLNMDLAPSTLSLIDPDNLTVLHECRV 67 (123)
T ss_pred eEEEEEEecCcEEEEcCCCCeEEEEEEe
Confidence 4689999999999999999999887654
No 41
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=41.99 E-value=28 Score=29.95 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=23.5
Q ss_pred ceEEEEEecCceEEEcCCCceeeeee
Q psy14290 303 EMLLIAINKHGVSLIHPQTKISLDYK 328 (332)
Q Consensus 303 ~~~~LgVn~~Gv~i~~~~~~~~l~~~ 328 (332)
.++-|-|+.+||.++++++++++...
T Consensus 50 t~V~L~IS~~gV~v~~~~tk~im~~h 75 (156)
T cd01208 50 TEVDLFISTEKIMVLNTDLQEIXMDH 75 (156)
T ss_pred cEEEEEEEeCeEEEEecCccceeccC
Confidence 57999999999999999999998744
No 42
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=37.67 E-value=30 Score=28.72 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=29.8
Q ss_pred cCCCCCceEEEEEecCceEEEcCCCceeeeeeccc
Q psy14290 297 TEPNYPEMLLIAINKHGVSLIHPQTKISLDYKSIS 331 (332)
Q Consensus 297 ~~~~~p~~~~LgVn~~Gv~i~~~~~~~~l~~~~~~ 331 (332)
+|.-|+.++++=|+...|.++|.++|+.++.++++
T Consensus 36 ~G~iW~Q~m~lqv~~~~v~LlD~etk~elE~fpl~ 70 (127)
T cd01210 36 QGRVWSQKMILRVRYQWVTLLDYETKEELESYPLS 70 (127)
T ss_pred cCCccccceEEEEcCCeEEEEcCCCcChhhcCCHh
Confidence 44557778999999999999999999999887654
No 43
>PRK10941 hypothetical protein; Provisional
Probab=34.79 E-value=2.1e+02 Score=26.83 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=36.5
Q ss_pred ccCCCHHHHHHHHHHHH--hcCCCCCceEEEEEeecCCCCCceEEEEEe-cCc-eEEEcCCCceeee
Q psy14290 264 DAGMSPEDAKITFLKII--YRWPTFGSAFFEVKQTTEPNYPEMLLIAIN-KHG-VSLIHPQTKISLD 326 (332)
Q Consensus 264 ~~g~s~~~A~~~yL~~~--~~~p~yGs~~F~v~~~~~~~~p~~~~LgVn-~~G-v~i~~~~~~~~l~ 326 (332)
-+|+.-+- -.-||.+| -.+|++|+.| |+..+|.+. .+| ..++||-+++.+.
T Consensus 94 R~G~PisL-~il~l~iA~~lglp~~gV~f-----------Pghfllr~~~~d~~~~~IDPf~G~~L~ 148 (269)
T PRK10941 94 RQGSAVSL-GAILLWIANRLDLPLMPVIF-----------PTQLILRADWLDGEMWLINPFNGETLD 148 (269)
T ss_pred cCCCcHHH-HHHHHHHHHHcCCCeeeeec-----------CchheeeeecCCCceEEEeCCCCCCCC
Confidence 34554444 34577777 5569999988 678999997 434 7889999888664
No 44
>PHA03001 putative virion core protein; Provisional
Probab=32.75 E-value=1.2e+02 Score=25.28 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHHhhc-----ccceeEEEEeecCCCCCCCeeeeccCCceEEee
Q psy14290 110 NAEDIRDLVVYFLEGLK-----KRSSFVIALQDYKAPGEGSSFLSFHRGDLILLE 159 (332)
Q Consensus 110 ~a~~~~elV~~~l~gL~-----e~s~f~lal~d~~~~~d~~~~L~~~kgd~iiLe 159 (332)
...++...+..|++.|+ +.|.|.++++|. +-.+...++|-+-.+|
T Consensus 28 ~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd~-----diFyfkcdkG~is~ve 77 (132)
T PHA03001 28 TKAEMRKAINKFLELLKKYIHVDKSTFYLVVKDK-----DIFYFKCDKGSISQVE 77 (132)
T ss_pred ccchHHHHHHHHHHHHHhhEEecccEEEEEEecC-----cEEEEEecCCeEeecc
Confidence 35677889999998776 689999999974 2344556777666654
No 45
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=26.43 E-value=1.6e+02 Score=22.36 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHH---hcCCCC
Q psy14290 252 EWKRCIIAAYNQDAGMSPEDAKITFLKII---YRWPTF 286 (332)
Q Consensus 252 ~w~~~I~~~~~~~~g~s~~~A~~~yL~~~---~~~p~y 286 (332)
+..+...+..+++ |+|+++|-..|++.+ .++|+=
T Consensus 11 ~lK~~A~~vl~~l-Gls~S~Ai~~fl~qi~~~~~iPF~ 47 (80)
T PRK11235 11 ELKARAYAVLEKL-GVTPSEALRLLLQYVAENGRLPFK 47 (80)
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCCCCC
Confidence 3444445555554 999999999988887 677754
No 46
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=25.23 E-value=48 Score=22.63 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=20.9
Q ss_pred eEEEEeecCCCCCCCeeeeccCCceEEee--cCCCce
Q psy14290 131 FVIALQDYKAPGEGSSFLSFHRGDLILLE--EGSTGE 165 (332)
Q Consensus 131 f~lal~d~~~~~d~~~~L~~~kgd~iiLe--q~~~~~ 165 (332)
|+.|+.|+.. .++..|++.+||++.+- +...+|
T Consensus 1 ~~~a~~d~~~--~~~~~Ls~~~Gd~i~v~~~~~~~~w 35 (55)
T PF07653_consen 1 YYRAIFDYVA--EDPDELSFKKGDVIEVLGEKDDDGW 35 (55)
T ss_dssp EEEESSSBES--SSTTB-EB-TTEEEEEEEEECSTSE
T ss_pred CEEEeEEECC--CCCCceEEecCCEEEEEEeecCCCE
Confidence 4567777765 55666999999999753 444455
No 47
>PF08256 Antimicrobial20: Aurein-like antibiotic peptide; InterPro: IPR013157 This family of antibacterial peptides are secreted from the granular dorsal glands of Litoria aurea (Green and golden bell frog), Litoria raniformis (Southern bell frog), Litoria citropa (Australian blue mountains tree frog) and frogs from genus Uperoleia. They are a part of the FSAP peptide family. Amongst the more active of these are aurein 1.2, aurein 2.2 and aurein 3.1; caerin 1.1, maculatin 1.1, uperin 3.6 []; citropin 1.1, citropin 1.2, citropin 1.3 and a minor peptide are wide-spectrum antibacterial peptides [].; GO: 0006952 defense response
Probab=24.99 E-value=45 Score=16.50 Aligned_cols=11 Identities=9% Similarity=0.326 Sum_probs=8.7
Q ss_pred chhhHHhhhhh
Q psy14290 5 GFLNQIHNFAQ 15 (332)
Q Consensus 5 ~~~~~~~~~~~ 15 (332)
|+||++..+.+
T Consensus 1 Gl~Di~Kkv~g 11 (13)
T PF08256_consen 1 GLFDIAKKVVG 11 (13)
T ss_pred CHHHHHHHHhc
Confidence 78999987754
No 48
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=24.75 E-value=1.4e+02 Score=22.03 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=23.3
Q ss_pred eEEEEcCChhhHHHHHHHHHHhhc---ccceeEEE
Q psy14290 103 EFTFQSPNAEDIRDLVVYFLEGLK---KRSSFVIA 134 (332)
Q Consensus 103 ~~~l~~~~a~~~~elV~~~l~gL~---e~s~f~la 134 (332)
..++.+++.+++.|+|...++.++ .-..|.+.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 466777888999999999998543 23446663
No 49
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=23.09 E-value=47 Score=29.19 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=17.9
Q ss_pred ccchhhHHhhhhh-hC---ChHHHHHHhccc
Q psy14290 3 RSGFLNQIHNFAQ-HC---SKTEREVLARGF 29 (332)
Q Consensus 3 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~ 29 (332)
+.||+||++.|.. +| +++--..+++.|
T Consensus 83 nnaYLNFLReFRrkh~~L~p~dlI~~AAraW 113 (183)
T PF06382_consen 83 NNAYLNFLREFRRKHCGLSPQDLIQRAARAW 113 (183)
T ss_pred chHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5799999999995 55 444444444444
No 50
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=22.65 E-value=3e+02 Score=22.91 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHhhc-----ccceeEEEEeecCCCCCCCeeeeccCCceEEeecCCCceEEEEEEEeccc
Q psy14290 111 AEDIRDLVVYFLEGLK-----KRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKKLWTN 176 (332)
Q Consensus 111 a~~~~elV~~~l~gL~-----e~s~f~lal~d~~~~~d~~~~L~~~kgd~iiLeq~~~~~~L~Frrk~w~~ 176 (332)
..++...|..|+..|+ +.|.|.++++|. +-.+...++|-+-.++. ++..+=....|.+
T Consensus 30 ~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd~-----diFyfk~dkG~vs~ven---efy~f~~~l~f~~ 92 (130)
T PF06138_consen 30 GCEARRAVKHFLSVLKKYIDVEESTFYLVVRDK-----DIFYFKCDKGRVSPVEN---EFYVFDEELLFVD 92 (130)
T ss_pred cchHHHHHHHHHHHHHhhEEecccEEEEEEecC-----cEEEEEecCCeEeeccc---cceEeccceeecc
Confidence 4567888999998776 689999999983 23445667887666653 4444333334444
No 51
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=21.48 E-value=2.2e+02 Score=21.54 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHH---hcCCCCCc
Q psy14290 252 EWKRCIIAAYNQDAGMSPEDAKITFLKII---YRWPTFGS 288 (332)
Q Consensus 252 ~w~~~I~~~~~~~~g~s~~~A~~~yL~~~---~~~p~yGs 288 (332)
+..+...+..+++ |+++.+|-..|++.+ +++|+--.
T Consensus 12 ~lK~~a~~i~~~l-Gl~~s~ai~~fl~qvv~~~~lPF~~~ 50 (83)
T TIGR02384 12 ELKKEAYAVFEEL-GLTPSTAIRMFLKQVIREQGLPFDLR 50 (83)
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCCCCCcC
Confidence 3444444455555 899999999999887 67886544
Done!