RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14290
(332 letters)
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 137 bits (347), Expect = 6e-38
Identities = 45/229 (19%), Positives = 93/229 (40%), Gaps = 12/229 (5%)
Query: 102 EEFTFQ-SPNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEE 160
+ S D+ + + G+ + +L + L++ L E+
Sbjct: 98 KTIMVDDSKTVTDMLMTICARI-GITNHDEY--SLVRELMEEKKDDELNWLDHGRTLREQ 154
Query: 161 GSTGET--VFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVY 218
G + K +++ L + Q +L G H S ++A + A
Sbjct: 155 GVEEHETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQC 214
Query: 219 RVRFGE-SKQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFL 277
+++FG ++Q+ +A L++ +P + +K + +R I A+ MS +AK+ ++
Sbjct: 215 QIQFGPHNEQKHKAGFLDLKDFLPKEYVK----QKGERKIFQAHKNCGQMSEIEAKVRYV 270
Query: 278 KIIYRWPTFGSAFFEVKQTTE-PNYPEMLLIAINKHGVSLIHPQTKISL 325
K+ T+G +FF VK+ + N L+ I K V + +TK +
Sbjct: 271 KLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVI 319
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 126 bits (318), Expect = 4e-35
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 190 HFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGE-SKQELQAIPQMLRELIPSDSIKIQ 248
+ Q +L G H S ++A + A +++FG ++Q+ +A L++ +P + +K
Sbjct: 32 LYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVK-- 89
Query: 249 SSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTE-PNYPEMLLI 307
+ +R I A+ MS +AK+ ++K+ T+G +FF VK+ + N L+
Sbjct: 90 --QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLL 147
Query: 308 AINKHGVSLIHPQTKISL 325
I K V + +TK +
Sbjct: 148 GITKECVMRVDEKTKEVI 165
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 123 bits (311), Expect = 2e-34
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 170 MKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGE-SKQE 228
MK +++ L + Q +L G H S ++A + A +++FG ++Q+
Sbjct: 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQK 60
Query: 229 LQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGS 288
+ L++ +P + IK + +R I A+ MS +AK+ ++K+ T+G
Sbjct: 61 HKPGFLELKDFLPKEYIKQK----GERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGV 116
Query: 289 AFFEVKQTTE-PNYPEMLLIAINKHGVSLIHPQTKISL 325
+FF VK+ + N L+ I K V + +TK +
Sbjct: 117 SFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVI 154
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 122 bits (308), Expect = 1e-32
Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 19/224 (8%)
Query: 127 KRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKKLWTNTVPGKDRNAD 186
+ + L+ Y P + +L L+ +F + + K
Sbjct: 52 CSENLSLQLKPYHKPLQHVRDWPEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDP 111
Query: 187 LIFH--FHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQA----IPQMLRELI 240
L F + LL+G++ + LA+L+ ++ +G + + + L+ ++
Sbjct: 112 LAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIV 171
Query: 241 PSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKI-----TFLKIIYRWPTFGSAFFEV-- 293
P +K ++ W I+ Y + ++ FL+ + PT+G+AFF
Sbjct: 172 PVTKLKSKAP-HWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQI 230
Query: 294 -KQTTEPNYPEM-LLIAINKHGVSLIHPQTK---ISLDYKSISW 332
+ + N+ + + + +N G+ L++ +TK ISL Y W
Sbjct: 231 FTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCFMW 274
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 119 bits (299), Expect = 2e-30
Identities = 39/219 (17%), Positives = 72/219 (32%), Gaps = 34/219 (15%)
Query: 147 FLSFHRGDLILLEEGSTGETVFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCS 206
L+ E G +F + +T + + F F Q ++ G+H
Sbjct: 281 VLAKFEKLAATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAP 340
Query: 207 KEEAAKLAALVYRVRFGESKQE------------------------------LQAIPQML 236
+E LAAL + G+ + Q +
Sbjct: 341 EENLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKV 400
Query: 237 RELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQT 296
E D + + + II + + GM+ E A ++ +I WP +GS F+V+
Sbjct: 401 EEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVE-C 459
Query: 297 TEPNYPEMLLIAINKHGVSLIHPQTK---ISLDYKSISW 332
E +P+ L + ++ VS+ Y+ I
Sbjct: 460 KEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILS 498
Score = 27.6 bits (60), Expect = 6.7
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 99 IPGEEFTFQSPNAEDIRDLV-VYFLEGLKKRSSFVIALQDYKAPGEGSS 146
+ E F++ D+ L+ Y +KKR S + A +GSS
Sbjct: 511 VDERELLFETSEVVDVAKLMKAYISMIVKKRYSTTRS-----ASSQGSS 554
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 103 bits (259), Expect = 9e-26
Identities = 32/171 (18%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 166 TVFFMKKLWTNTVPGKDRNADLIFHF-HQELPKLLRGYHKCSKEEAAKLAALVYRVRFGE 224
T F+ K + + F Q ++L C E + LA+ + ++G+
Sbjct: 94 TFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGD 153
Query: 225 SKQELQA-IPQMLRELIPSDSIKI--QSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIY 281
+ EL+P I + + W+ I A Y + G + ++A++ +LKI
Sbjct: 154 YDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQ 213
Query: 282 RWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTKISLDYKSISW 332
+G +F ++ LL+ ++ G+ + P+ +++ S W
Sbjct: 214 DLEMYGVNYFAIRN----KKGTELLLGVDALGLHIYDPENRLTP-KISFPW 259
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 93.9 bits (232), Expect = 3e-21
Identities = 48/244 (19%), Positives = 102/244 (41%), Gaps = 21/244 (8%)
Query: 108 SPNAEDIRDLVVYFLEGLKKRSSFVIALQDY---KAPGEGSSFL------SFHRGDLILL 158
+ A ++ + + + LK R F + + + + G GS +
Sbjct: 283 ATTARELCNALADKI-SLKDRFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGA 341
Query: 159 EEGSTGETVFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEE-AAKLAALV 217
+E + +FF K+++T + N + Q + + G ++C KE+ A+LA+
Sbjct: 342 QERNAPWRLFFRKEVFTPWHNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQ 401
Query: 218 YRVRFGESKQELQAIPQMLRELIPSDSI-KIQSSTEWKRCIIAAYNQDA----GMSPEDA 272
Y V +G L+ + ++ IP I +++ +W + IAA+ + +
Sbjct: 402 YFVDYGSE-MILERLLSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKV 460
Query: 273 KITFLKII-YRWPTFGSAFFEVKQTTEPNYPEM-LLIAINKHGVSLIHPQTKI--SLDYK 328
K + ++WP S F+E + + P P+ +++A+N GV + Q ++ L +
Sbjct: 461 KEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLELSFP 520
Query: 329 SISW 332
I
Sbjct: 521 EIMA 524
Score = 70.7 bits (172), Expect = 1e-13
Identities = 46/70 (65%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Query: 99 IPGEEFTFQSPNAEDIRDLVVYFLEGLKKRSSFVIALQDYKAP-GEGSSFLSFHRGDLIL 157
I G+E+TF S NAEDIRDLVV FLEGL+KRS +V+ALQD P GE S FLSF +GDLI+
Sbjct: 543 IKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVALQDNPNPAGEESGFLSFAKGDLII 602
Query: 158 LEEGSTGETV 167
L+ TGE V
Sbjct: 603 LDHD-TGEQV 611
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 88.4 bits (218), Expect = 6e-20
Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 13/166 (7%)
Query: 167 VFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAA-KLAALVYRVRFG-- 223
+ ++ K + N +D+ L F + Q + +E A KL L R +G
Sbjct: 96 IRYLPKGFLN-QFTEDKPT-LNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEM 153
Query: 224 -----ESKQELQAIPQM--LRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITF 276
E K + + + LR P + + ++ I + Q A ++ E++ + F
Sbjct: 154 RGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKF 213
Query: 277 LKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTK 322
+I+ F F+ + L I G+S + +
Sbjct: 214 FEILSPVYRFDKECFKCALGSSWIISVELAIGPE-EGISYLTDKGA 258
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 86.8 bits (214), Expect = 3e-19
Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 14/166 (8%)
Query: 167 VFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYH-KCSKEEAAKLAALVYRVRFG-- 223
+ ++ + + +DR L++ + Q ++ Y K S+ A +L L R F
Sbjct: 116 IRYLPEDFME-SLKEDRTT-LLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDM 173
Query: 224 -----ESKQELQAIPQ--MLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITF 276
+ K + + + L P + ++++ I + Q A + E+ + F
Sbjct: 174 PHNALDKKSNFELLEKEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECVMKF 233
Query: 277 LKIIYRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTK 322
+ + + + N L+ I G+ + Q
Sbjct: 234 FNTLAGFANIDQETYRCELIQGWNITVDLV--IGPKGIRQLTSQDA 277
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 74.6 bits (183), Expect = 2e-15
Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 11/172 (6%)
Query: 166 TVFFMKKLWTNTVPGKDRNADLIFHFHQELPK-LLRGYHKCSKEEAAKLAALVYRVRFGE 224
F K + V + F ++ + +L C E A LA+ + ++G+
Sbjct: 74 LFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGD 133
Query: 225 SKQELQAIPQMLRE--LIPSDSIKI--QSSTEWKRCIIAAYNQDAGMSPEDAKITFLKII 280
+E+ L L+P ++ + +W+ I + + GM EDA + +LKI
Sbjct: 134 FNKEVHK-SGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIA 192
Query: 281 YRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTKISLDYKSISW 332
+G +F +K L + ++ G+++ +++ W
Sbjct: 193 QDLEMYGVNYFSIKN----KKGSELWLGVDALGLNIYEQNDRLTP-KIGFPW 239
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 64.2 bits (156), Expect = 6e-12
Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 166 TVFFMKKLWTNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGES 225
F K + + + Q ++ G CS A L + + G+
Sbjct: 89 NFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDY 148
Query: 226 KQELQAIPQMLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPT 285
EL + + + + E + ++ + M+P A + FL+ +
Sbjct: 149 DPELHG-----VDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSM 203
Query: 286 FGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTKISLDYKSISW 332
+G + K +++ + G+ + + +I+ W
Sbjct: 204 YGVDLHKAK----DLEGVDIILGVCSSGLLVYKDKLRINR----FPW 242
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 63.8 bits (154), Expect = 2e-11
Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 10/163 (6%)
Query: 166 TVFFMKKLWTNTVPGKDRNADLIFHFHQELPK-LLRGYHKCSKEEAAKLAALVYRVRFGE 224
F K + V + + F+ ++ +L C E + LA+ + R G+
Sbjct: 77 QFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGD 136
Query: 225 SKQELQAIPQMLRE--LIPSDSIKI--QSSTEWKRCIIAAYNQDAGMSPEDAKITFLKII 280
+ P L L+P S EW++ I + + GM EDA + +LKI
Sbjct: 137 HNPAVHG-PGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIA 195
Query: 281 YRWPTFGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTKI 323
+G +FE++ L + ++ G+++ K+
Sbjct: 196 QDLEMYGVNYFEIRN----KKNTELWLGVDALGLNIYEKDDKL 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 8e-07
Identities = 59/407 (14%), Positives = 122/407 (29%), Gaps = 129/407 (31%)
Query: 4 SGFL--NQIHNFAQHCSKTEREVLARGFQLV-VFLHEEAWTNHRSTGKDRTADLIFHFHP 60
+ +L N IH A + L + +L+ ++ R K + L
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK-RPFDKKSNSALFRAVGE 151
Query: 61 GIAQVTA--------------------SYHKCSRKRLQVSAPLVIECASGESKQE----- 95
G AQ+ A +YH ++ SA + E E
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 96 --------HRP--IPGEEFTFQSPNAEDIRDLVVYF-LEGLKKRSSFVIALQDY-KAPGE 143
P P +++ P + L G+ + + +V+ + PGE
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIP---------ISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 144 GSSFL---SFHRGDLI---LLEEGSTGETVFFMKKLWTNTVPGKDRNAD----LIFH--- 190
S+L + H L+ + E + E+ FF + ++F
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWES-FF-------------VSVRKAITVLFFIGV 308
Query: 191 -FHQELPKL-LR-GYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQMLRELIPSDSIKI 247
++ P L + S E + + + + +++++Q +P+ ++
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSHLPAGK-QV 366
Query: 248 QSSTEWKRCIIAAYNQD-----AGMSPED-------------------AKITFLKIIYRW 283
+ I+ N +G P+ ++I F + R
Sbjct: 367 E---------ISLVNGAKNLVVSG-PPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RK 413
Query: 284 PTFGSAFFEVKQTTEP-------NYPEMLLIAINKHGVSLIHPQTKI 323
F + F V P +++ + K+ VS +I
Sbjct: 414 LKFSNRFLPV---ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 3e-06
Identities = 47/351 (13%), Positives = 95/351 (27%), Gaps = 114/351 (32%)
Query: 17 CSKTEREVLA----------RGFQLVVFLHEEAWTNHRSTGKDRTADLIFHFHPGIAQVT 66
KT +A +F W N + + + + +
Sbjct: 161 SGKT---WVALDVCLSYKVQCKMDFKIF-----WLN---LKNCNSPETV------LEMLQ 203
Query: 67 ASYHK-----CSRKRLQVSAPLVIECASGESKQEHRPIPGEEFTFQSPNA----EDIRDL 117
++ SR + L I + E R + + N ++++
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIH----SIQAELRRLLKSK---PYENCLLVLLNVQNA 256
Query: 118 VVYFLEGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKKL---W 174
++ + + + FLS I L+ S T +K L +
Sbjct: 257 KA--WNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 175 TNTVPGKDRNADLIFHFHQELPKLLRGYHKCSKEEAAKLAALVYRVRFGESKQELQAIPQ 234
+ P Q+LP E + ES ++ A
Sbjct: 311 LDCRP-------------QDLP-----------REVLTTNPRRLSI-IAESIRDGLATWD 345
Query: 235 MLREL-------IPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKIT--FLKIIYRWPT 285
+ + I S+ + E+++ + + P A I L +I W
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKM----F-DRLSVFPPSAHIPTILLSLI--W-- 396
Query: 286 FGSAFFEVKQTTEPNYPEMLLIAINKHGVSLIHPQTK--------ISLDYK 328
+ +++++ H SL+ Q K I L+ K
Sbjct: 397 -----------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Score = 32.9 bits (74), Expect = 0.17
Identities = 39/292 (13%), Positives = 80/292 (27%), Gaps = 85/292 (29%)
Query: 57 HFHPGIAQVTASYHKCSRKRLQVSAPLVI---ECASGESKQEHRPI-PGEEF--TFQSPN 110
H H + T + + L V + +C + + + I EE S +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKD 59
Query: 111 AEDIRDLVVYFLEGLKKRSS----FVIAL--QDYKAPGEGSSFL--SFHRGDLILLEEGS 162
A + + L L K+ FV + +YK FL
Sbjct: 60 AVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYK-------FLMSPIKTEQ-----RQP 105
Query: 163 TGETVFFMK---KLWTNTVPGKDRN---ADLIFHFHQELPKL-------LRGYHKCSKEE 209
+ T +++ +L+ + N Q L +L + G K
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-- 163
Query: 210 AAKLAALVYR--------------VRFGESKQELQAIPQMLRELIPSDSIKIQSSTEWKR 255
+A V + + + +ML++L+ Q W
Sbjct: 164 -TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLL------YQIDPNW-- 213
Query: 256 CIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQTTEPNYPEMLLI 307
+ ++ + + + +++ P Y LL+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKP----------------YENCLLV 249
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 37.0 bits (86), Expect = 9e-04
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 126 KKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
S +VIAL+ Y LSFHRGDLI L +T E
Sbjct: 5 SSGSGYVIALRSYITDNCSL--LSFHRGDLIKLLPVATLE 42
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 35.0 bits (80), Expect = 0.007
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKKLWTNTVPGKDRNAD 186
S +ALQDY AP FL+ HRG ++ + G + W +V G
Sbjct: 23 SMAVALQDYMAPDCR--FLTIHRGQVVYVFSKLKGRG----RLFWGGSVQGDYYGDL 73
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 33.4 bits (77), Expect = 0.009
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 128 RSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGS 162
+ + VIAL Y+ +G L F +G+ + + E S
Sbjct: 5 QDNLVIALHSYEPSHDGD--LGFEKGEQLRILEQS 37
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 32.6 bits (75), Expect = 0.016
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILLEE 160
IAL Y + G L+F G+ IL+ +
Sbjct: 10 EYIALYPYSSVEPGD--LTFTEGEEILVTQ 37
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 33.6 bits (77), Expect = 0.019
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 124 GLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
GL + +AL DY+A LSF +G+ + + G+
Sbjct: 22 GLTGGVTIFVALYDYEARTTED--LSFKKGERFQIINNTEGD 61
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 32.8 bits (75), Expect = 0.022
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 129 SSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGS 162
S F+ L DY +P F RG+ + +
Sbjct: 17 SDFLAVLSDYPSPDISP--PIFRRGEKLRVISDE 48
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 32.2 bits (74), Expect = 0.025
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTGE 165
+AL D+ A G+ + LS +G+ + +L GE
Sbjct: 7 LFVALYDFVASGDNT--LSITKGEKLRVLGYNHNGE 40
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 32.2 bits (74), Expect = 0.025
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 128 RSSFVIALQDYKAPGEGSSFLSFHRGDLI 156
+ V+AL Y LSF +G+ +
Sbjct: 6 QGDIVVALYPYDGIHPDD--LSFKKGEKM 32
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 32.4 bits (74), Expect = 0.025
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
+ +AL DY+A LSF GD + + + S
Sbjct: 9 YFVALFDYQARTAED--LSFRAGDKLQVLDTSHEG 41
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 31.8 bits (73), Expect = 0.028
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLI 156
++V AL D+ +G L F RGD I
Sbjct: 3 TYVQALFDFDPQEDGE--LGFRRGDFI 27
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 32.2 bits (74), Expect = 0.029
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
V+A+ D++A L RG ++ E +
Sbjct: 4 IVVAMYDFQATEAHD--LRLERGQEYIILEKNDLH 36
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 31.8 bits (73), Expect = 0.031
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 124 GLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
G + L Y E L+F G++I L TGE
Sbjct: 1 GAMGAKEYCRTLFPYTGTNEDE--LTFREGEIIHLISKETGE 40
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 32.4 bits (74), Expect = 0.032
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
+ +AL DY A LSFH+G+ + E G+
Sbjct: 7 TLFVALYDYNATRWTD--LSFHKGEKFQILEFGPGD 40
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 31.9 bits (73), Expect = 0.033
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
V+AL DY A L+ HRGD+I
Sbjct: 9 VVALYDYTANRSDE--LTIHRGDII 31
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 31.9 bits (73), Expect = 0.038
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 125 LKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
+ + S+ AL DY+A E LSFH+G+ + S G+
Sbjct: 1 MVQISTLFEALYDYEARTEDD--LSFHKGEKFQILNSSEGD 39
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 31.8 bits (73), Expect = 0.039
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 124 GLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILL 158
G+ + IA ++ + +SF +G+ I L
Sbjct: 1 GIDPFTGEAIAKFNFNGDTQVE--MSFRKGERITL 33
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 32.4 bits (74), Expect = 0.040
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILL 158
V+AL DY + LSF +GD +++
Sbjct: 5 IVVALYDYVSWSPDD--LSFQKGDQMVV 30
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 31.6 bits (72), Expect = 0.041
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 130 SFVIALQDYKA--PGEGSSFLSFHRGDLILL 158
V+AL DY+ P E ++ +GD++ L
Sbjct: 22 ELVLALYDYQEKSPRE----VTMKKGDILTL 48
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 31.3 bits (72), Expect = 0.045
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
+V AL D+ E L F +GD++
Sbjct: 3 YVRALFDFNGNDEED--LPFKKGDIL 26
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 31.4 bits (72), Expect = 0.046
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLILL 158
F IA DY E LSF +G +LL
Sbjct: 8 FAIAKFDYVGRSARE----LSFKKGASLLL 33
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 32.0 bits (73), Expect = 0.047
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILL 158
V+AL DY+A LSF +GD +++
Sbjct: 27 IVVALYDYEAIHHED--LSFQKGDQMVV 52
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 31.0 bits (71), Expect = 0.055
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
FV AL D+ G L+F RGD+I
Sbjct: 4 FVQALFDFNPQESGE--LAFKRGDVI 27
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 31.0 bits (71), Expect = 0.056
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
+V AL D+ E L F +GD++
Sbjct: 5 YVRALFDFNGNDEED--LPFKKGDIL 28
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 31.0 bits (71), Expect = 0.058
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
V AL DYKA E L+F + +I
Sbjct: 6 VKALFDYKAQREDE--LTFTKSAII 28
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 31.1 bits (71), Expect = 0.058
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
V AL DYKA E L+F + +I
Sbjct: 9 VKALFDYKAQREDE--LTFIKSAII 31
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 31.5 bits (72), Expect = 0.059
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
FV AL DY+ + LSF G +I
Sbjct: 10 FVKALYDYEGQTDDE--LSFPEGAII 33
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 31.2 bits (71), Expect = 0.059
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLILLEEGSTGE 165
V+AL DY+ P E ++ +GD++ L + +
Sbjct: 3 LVLALYDYQEKSPRE----VTMKKGDILTLLNSTNKD 35
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 31.1 bits (71), Expect = 0.063
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
+A+ DY A E LSF RG+ IL+ +T +
Sbjct: 10 FVAIADYAATDETQ--LSFLRGEKILILRQTTAD 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.063
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 226 KQELQAIPQMLRELIPSDS---IKIQSSTE 252
KQ L+ + L+ DS + I+++ E
Sbjct: 19 KQALKKLQASLKLYAD-DSAPALAIKATME 47
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 30.7 bits (70), Expect = 0.078
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
V A+ + A G+ S+ LSF GDLI L +
Sbjct: 10 VKAIFSHAA-GDNSTLLSFKEGDLITLLVPEARD 42
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 31.1 bits (71), Expect = 0.080
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLILL 158
V+AL DY+ P E ++ +GD++ L
Sbjct: 7 LVLALYDYQEKSPRE----VTMKKGDILTL 32
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 30.7 bits (70), Expect = 0.083
Identities = 5/34 (14%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
+ +Q Y + + + F +G + ++ + G
Sbjct: 11 YVTVQPYTSQSKDE--IGFEKGVTVEVIRKNLEG 42
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 30.6 bits (70), Expect = 0.083
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 127 KRSSFVIALQDYKA--PGEGSSFLSFHRGDLILL 158
K+ S V AL Y+A P + L F GD+IL+
Sbjct: 3 KKGSQVEALFSYEATQPED----LEFQEGDIILV 32
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 30.7 bits (70), Expect = 0.083
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
AL D A LSF +GD++
Sbjct: 5 LAKALYDNVAESPDE--LSFRKGDIM 28
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 31.2 bits (71), Expect = 0.085
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLILL 158
V+AL DY+ P E ++ +GD++ L
Sbjct: 4 LVLALYDYQEKSPRE----VTMKKGDILTL 29
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 30.8 bits (70), Expect = 0.087
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILL 158
+A Y LSF RGD++ L
Sbjct: 13 AVACFAYTGRTAQE--LSFRRGDVLRL 37
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 30.6 bits (70), Expect = 0.087
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILL 158
+V AL + +G L GD + L
Sbjct: 4 YVEALYQFDPQQDGD--LGLKPGDKVQL 29
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 30.7 bits (70), Expect = 0.088
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILLEEGSTGE 165
V+AL DY + L +GD + E S
Sbjct: 11 VVALYDYMPMNAND----LQLRKGDEYFILEESNLP 42
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 32.7 bits (74), Expect = 0.096
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGD-LILLEEGSTGETVFFMKKLWTNTVPGKDRNADLI 188
+ VIAL Y+ +G L F +G+ L +LE+ + + L T N
Sbjct: 13 NLVIALHSYEPSHDGD--LGFEKGEQLRILEQSGEW---WKAQSLTTGQEGFIPFNFVAK 67
Query: 189 FHFHQELPKLLRGYHKCSKEEAAKL 213
+ + P + S+++A +
Sbjct: 68 ANSLEPEPWF---FKNLSRKDAERQ 89
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 30.7 bits (70), Expect = 0.096
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
+AL DY+A E LSFH+G+
Sbjct: 17 LFVALYDYEAITEDD--LSFHKGEKF 40
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 31.3 bits (71), Expect = 0.098
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 123 EGLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLI 156
G A+ DY+A G+ L+ RGD +
Sbjct: 23 MGTTPAGPVWTAVFDYEAAGDEE--LTLRRGDRV 54
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 30.7 bits (70), Expect = 0.10
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILL 158
IA DY E LSF +G +LL
Sbjct: 12 AIAKFDYVGRTARE----LSFKKGASLLL 36
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 30.4 bits (69), Expect = 0.10
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
V+A YK+ E L+F + I
Sbjct: 10 VVAQFPYKSDYEDD--LNFEKDQEI 32
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 30.8 bits (70), Expect = 0.10
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
VIAL DY+ L+ + L + S
Sbjct: 22 LVIALYDYQTNDPQE--LALRCDEEYYLLDSSEIH 54
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 30.4 bits (69), Expect = 0.11
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTG 164
AL Y A + + +SF + +++ + +
Sbjct: 6 YKAKALYPYDADDDDAYEISFEQNEILQVSDIEGR 40
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 30.3 bits (69), Expect = 0.11
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
V AL DYKA L+F RG LI
Sbjct: 10 VKALYDYKAKRSDE--LTFCRGALI 32
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 30.8 bits (70), Expect = 0.12
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLILLEEGSTGE 165
VIAL DY+ P E L+ R + L + S
Sbjct: 21 VVIALYDYQTNDPQE----LALRRNEEYCLLDSSEIH 53
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 30.3 bits (69), Expect = 0.12
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLILL 158
V+ L DY+ P E L+ +GD++ L
Sbjct: 8 LVLVLYDYQEKSPRE----LTVKKGDILTL 33
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 29.8 bits (68), Expect = 0.12
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
+ AL D++A E L F G+++
Sbjct: 3 WARALYDFEALEEDE--LGFRSGEVV 26
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 30.4 bits (69), Expect = 0.13
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 126 KKRSSFVIALQDYKAPGEGSSFLSFHRGDLI 156
F AL D+ ++ +GDL+
Sbjct: 4 HHHHHFARALYDFVPENPEME-VALKKGDLM 33
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 30.4 bits (69), Expect = 0.13
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
A+ D+ L+F GD+I
Sbjct: 12 SAEAVWDHVTMANRE--LAFKAGDVI 35
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 30.4 bits (69), Expect = 0.13
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
V AL ++ G L+F GD I
Sbjct: 20 VTALYSFEGQQPGD--LNFQAGDRI 42
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 30.3 bits (69), Expect = 0.14
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLI 156
+AL Y A P E L +G+ I
Sbjct: 10 FVALHTYSAHRPEE----LDLQKGEGI 32
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 30.4 bits (69), Expect = 0.14
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
I ++ P G L+F +GD++
Sbjct: 20 CITKCEHTRPKPGE--LAFRKGDVV 42
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 30.4 bits (69), Expect = 0.15
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 6/28 (21%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLI 156
A+ +KA P E LS +
Sbjct: 15 VYFAVYTFKARNPNE----LSVSANQKL 38
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 29.9 bits (68), Expect = 0.15
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 124 GLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLI 156
G V A +++ E LSF +GD+I
Sbjct: 1 GSANSQLVVRAKFNFQQTNEDE--LSFSKGDVI 31
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 29.9 bits (68), Expect = 0.16
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
IA ++ E L F +GD++
Sbjct: 14 CIAKYNFHGTAEQD--LPFCKGDVL 36
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILL 158
AL D+ E L+F GD+I L
Sbjct: 7 AEALFDFTGNSKLE----LNFKAGDVIFL 31
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 30.0 bits (68), Expect = 0.17
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
+ L D+K+ + LSF GD+
Sbjct: 12 KYVGLWDFKSRTDEE--LSFRAGDVF 35
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 29.8 bits (68), Expect = 0.17
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
+AL + G L F +GD+I
Sbjct: 6 AVALYSFAGEESGD--LPFRKGDVI 28
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 29.5 bits (67), Expect = 0.17
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
A DY A + L+F D I
Sbjct: 3 ATAEYDYDAAEDNE--LTFVENDKI 25
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 30.0 bits (68), Expect = 0.17
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 124 GLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
G + V + + A G + LSF +GD+I L +
Sbjct: 1 GSHMKKQKVKTIFPHTA-GSNKTLLSFAQGDVITLLIPEEKD 41
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 29.9 bits (68), Expect = 0.18
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
+ + Y+A + L+ GD++
Sbjct: 4 YCKVIFPYEAQNDDE--LTIKEGDIV 27
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 30.0 bits (68), Expect = 0.19
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
+A ++ A LS GD++ + G+
Sbjct: 10 AVARYNFAARDMRE--LSLREGDVVRIYSRIGGD 41
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 29.9 bits (68), Expect = 0.20
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
AL ++ L F GD+I
Sbjct: 10 FRALYTFEPRTPDE--LYFEEGDII 32
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 29.5 bits (67), Expect = 0.21
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLI 156
S V A +++ E LSF +GD+I
Sbjct: 5 SVVRAKFNFQQTNEDE--LSFSKGDVI 29
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 30.0 bits (68), Expect = 0.21
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
V+A+ DY E LSF G +I ++++ G
Sbjct: 20 VVAIYDYTKDKEDE--LSFQEGAIIYVIKKNDDG 51
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 29.5 bits (67), Expect = 0.21
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
AL Y A LSF+ D+I
Sbjct: 8 CKALYAYDAQDTDE--LSFNANDII 30
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 30.1 bits (68), Expect = 0.22
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLILL 158
V+AL DY+ P E ++ +GD++ L
Sbjct: 19 LVLALYDYQEKSPRE----VTMKKGDILTL 44
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 29.5 bits (67), Expect = 0.22
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
+ + Y+A + L+ GD++
Sbjct: 9 YCKVIFPYEAQNDDE--LTIKEGDIV 32
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 30.2 bits (68), Expect = 0.22
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 129 SSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
SS AL ++A +SF+ GD+I ++E + GE
Sbjct: 5 SSGYRALYPFEARNHDE--MSFNSGDIIQVDEKTVGE 39
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 29.5 bits (67), Expect = 0.22
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILL 158
IA ++ E +SF +G+ I L
Sbjct: 10 AIAKFNFNGDTQVE----MSFRKGERITL 34
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 29.6 bits (67), Expect = 0.23
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
IA D+KA + LSF RGD++
Sbjct: 12 AIAKYDFKATADDE--LSFKRGDIL 34
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 29.0 bits (66), Expect = 0.24
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLI 156
AL ++ P E L F GD+I
Sbjct: 6 FRALYTFEPRTPDE----LYFEEGDII 28
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 29.6 bits (67), Expect = 0.24
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTGE 165
AL D L+F RGD++ +LE+
Sbjct: 9 LARALYDNCPDCSDE--LAFSRGDILTILEQHVPES 42
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 29.6 bits (67), Expect = 0.25
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 127 KRSSFVIALQDYKAPGEGSSFLSFHRGDLI 156
+ + + AL+DY L F R D+I
Sbjct: 8 EFAKYARALKDYNVSDTSL--LPFKRNDII 35
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 30.4 bits (68), Expect = 0.25
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETV 167
V A DY A L GD++L+ E
Sbjct: 46 KVQAQHDYTATDTDE--LQLKAGDVVLVIPFQNPEEQ 80
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 29.1 bits (66), Expect = 0.25
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 6/27 (22%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLI 156
V AL D++A E L+F G+LI
Sbjct: 8 VRALYDFEAVEDNE----LTFKHGELI 30
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 29.1 bits (66), Expect = 0.26
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILLEE 160
V AL DY A L+F GD I++ +
Sbjct: 6 VKALYDYDAQTGDE--LTFKEGDTIIVHQ 32
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 29.7 bits (67), Expect = 0.26
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 127 KRSSFVIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
Y A G LS G LI +L++ ++G
Sbjct: 5 SSGEIAQVTSAYVASGSEQ--LSLAPGQLILILKKNTSG 41
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 29.6 bits (67), Expect = 0.26
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLI 156
V L + + E L+F +G+ +
Sbjct: 8 VVQTLYPFSSVTEEE----LNFEKGETM 31
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 29.8 bits (67), Expect = 0.26
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 127 KRSSFVIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
+ S V AL+D+ + ++ L+ GD+I +LE+ G
Sbjct: 16 RGSLKVRALKDFWNLHDPTA-LNVRAGDVITVLEQHPDG 53
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 29.6 bits (67), Expect = 0.27
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILL 158
AL D+ E L+F GD+I L
Sbjct: 21 AEALFDFTGNSKLE----LNFKAGDVIFL 45
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 29.6 bits (67), Expect = 0.27
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 127 KRSSFVIALQDYKAPGEGSSFLSFHRGDLI 156
K + + Y+A + L+ GD++
Sbjct: 7 KSKDYCKVIFPYEAQNDDE--LTIKEGDIV 34
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 29.1 bits (66), Expect = 0.27
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
IAL DY+A G+ +SF D+I
Sbjct: 12 AIALYDYQAAGDDE--ISFDPDDII 34
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 30.1 bits (68), Expect = 0.28
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
VIA+ DY A E LSF +G LI
Sbjct: 37 VIAMYDYAANNEDE--LSFSKGQLI 59
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 29.2 bits (66), Expect = 0.31
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILLEE 160
AL + A + L+F + D+I + E
Sbjct: 13 AQALCSWTAKKDNH--LNFSKHDIITVLE 39
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 29.1 bits (66), Expect = 0.31
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLI-LLEEGSTG 164
+AL + + L GD+I LLE+ +
Sbjct: 10 YVALYKFVPQENED----LEMRPGDIITLLEDSNED 41
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 28.6 bits (65), Expect = 0.31
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
+ A+ Y+A G+ +S GD+I + G G
Sbjct: 3 MEAIYAYEAQGDDE--ISIDPGDIITVIRGDDGS 34
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 29.7 bits (67), Expect = 0.31
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILLEE 160
+A +K E LSF +G+ I L
Sbjct: 20 AVAQYTFKGDLEVE----LSFRKGEHICLIR 46
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 29.2 bits (66), Expect = 0.32
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
V + + A G + LSF +GD++ L +
Sbjct: 10 VKTIFPHTA-GNNKTLLSFAQGDVLTLLIPEEKD 42
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 29.2 bits (66), Expect = 0.33
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 126 KKRSSFVIALQDYKA--PGEGSSFLSFHRGDLI 156
+ + V A+ D++A E L+F G++I
Sbjct: 14 QHEARKVRAIYDFEAAEDNE----LTFKAGEII 42
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 29.2 bits (66), Expect = 0.34
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
+ +Q + L+ G+L+ + + +G
Sbjct: 8 YARVIQKRVPNAYDKTALALEVGELVKVTKINVSG 42
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 29.1 bits (66), Expect = 0.36
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILL 158
AL +Y+ G L F++GD+ILL
Sbjct: 10 AKALCNYRGKNPGD--LKFNKGDVILL 34
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 28.7 bits (65), Expect = 0.37
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
I DY A + L+ G++I
Sbjct: 4 YIVEYDYDAVHDDE--LTIRVGEII 26
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 30.8 bits (69), Expect = 0.42
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
IA D+KA + LSF RGD++
Sbjct: 3 AIAKYDFKATADD--ELSFKRGDIL 25
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 28.8 bits (65), Expect = 0.42
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
A+ Y+ E L GD + ++++ G
Sbjct: 10 YRAMYQYRPQNEDE--LELREGDRVDVMQQCDDG 41
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 28.7 bits (65), Expect = 0.47
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
AL DY A L GD++ ++ EG G
Sbjct: 11 YRALYDYTAQNPDE--LDLSAGDILEVILEGEDG 42
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 28.8 bits (65), Expect = 0.48
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
F A+Q + L+ GD++ + G
Sbjct: 3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNING 37
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 30.0 bits (67), Expect = 0.48
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLI 156
A D+ A LS GD+I
Sbjct: 6 GTAKARYDFCARDRSE--LSLKEGDII 30
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 28.7 bits (65), Expect = 0.50
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILL 158
L D++ +G L F GD+I L
Sbjct: 6 CRGLYDFEPENQGE--LGFKEGDIITL 30
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 28.7 bits (65), Expect = 0.51
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILL 158
A D+KA E L +GD++ +
Sbjct: 10 ARAKFDFKAQTLKE----LPLQKGDIVYI 34
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 28.8 bits (65), Expect = 0.51
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
V + D +A + L+F G++I
Sbjct: 13 VKTIYDCQADNDDE--LTFIEGEVI 35
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 28.8 bits (65), Expect = 0.53
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILL 158
AL D++ GE L F GDLI L
Sbjct: 16 CKALYDFEPENDGE----LGFREGDLITL 40
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 28.4 bits (64), Expect = 0.56
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLI 156
IA+ D+ A G+ L+F +G+++
Sbjct: 13 YIAVGDFTAQQVGD----LTFKKGEIL 35
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 28.8 bits (65), Expect = 0.59
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
AL D++ + L F + D+I
Sbjct: 10 AKALLDFERHDDDE--LGFRKNDII 32
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 28.4 bits (64), Expect = 0.59
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 126 KKRSSFVIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
V A ++K E LS +GD+I + G
Sbjct: 7 GSHQLIVKARFNFKQTNEDE--LSVCKGDIIYVTRVEEGG 44
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 29.0 bits (65), Expect = 0.60
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 131 FVIALQDYKA--PGEGSSFLSFHRGDLI 156
V L + + E L+F +G+ +
Sbjct: 19 VVQTLYPFSSVTEEE----LNFEKGETM 42
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 28.0 bits (63), Expect = 0.68
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
L +Y E L GD+I + EE G
Sbjct: 4 CKVLFEYIPQNEDE--LELKVGDIIDINEEVEEG 35
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 28.5 bits (64), Expect = 0.71
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
+AL DY+A G+ +SF D+I
Sbjct: 20 AVALYDYQAAGDDE--ISFDPDDII 42
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 28.6 bits (64), Expect = 0.71
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 126 KKRSSFVIALQDYKAPGEGSSFLSFHRGDLI 156
K + V AL D++A + L+F G++I
Sbjct: 14 NKVARKVRALYDFEAVEDNE--LTFKHGEII 42
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 27.9 bits (63), Expect = 0.76
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLI 156
V AL DY E LSF GD +
Sbjct: 6 VRALYDYDGQEQDE----LSFKAGDEL 28
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 28.0 bits (63), Expect = 0.78
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
AL KA + LSF G +
Sbjct: 13 AKALYACKAEHDSE--LSFTAGTVF 35
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 28.0 bits (63), Expect = 0.79
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILL 158
AL D++ EG L F GD+I L
Sbjct: 10 CRALYDFEPENEGE--LGFKEGDIITL 34
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 28.0 bits (63), Expect = 0.97
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLILLEE 160
V A+ Y + +SF +GD+ ++
Sbjct: 10 VRAILPYTKVPDTDE-ISFLKGDMFIVHN 37
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 27.7 bits (62), Expect = 1.0
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 133 IALQDYKAPGEGSSFLSFHRGDLILL 158
L Y A G ++ +GD++ L
Sbjct: 4 PPLPPYSAGGRE---VTMKKGDILTL 26
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 27.6 bits (62), Expect = 1.0
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
L +Y E L GD+I + EE G
Sbjct: 10 CKVLFEYIPQNEDE--LELKVGDIIDINEEVEEG 41
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 28.9 bits (64), Expect = 1.1
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 127 KRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGE 165
+ +A+ +++ G LS GD++ ++E
Sbjct: 57 DKERHGVAIYNFQGSGAPQ--LSLQIGDVVRIQETCGDW 93
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 27.5 bits (62), Expect = 1.1
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLI 156
I DY+A E L+ G++I
Sbjct: 4 AIVEFDYQAQHDDE----LTISVGEII 26
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 29.3 bits (65), Expect = 1.3
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 127 KRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEE 160
+ +A+ +++ G LS GD++ ++E
Sbjct: 15 DKERHGVAIYNFQGSGAP--QLSLQIGDVVRIQE 46
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 27.7 bits (62), Expect = 1.4
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILLEEGSTG 164
V + + A E ++ + D++L+ + G
Sbjct: 20 VEITKAFFAKQADE----VTLQQADVVLVLQQEDG 50
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 27.2 bits (61), Expect = 1.6
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLILL 158
D++A P E L+ +GD++ +
Sbjct: 4 ARLKFDFQAQSPKE----LTLQKGDIVYI 28
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 27.2 bits (61), Expect = 1.6
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
Y + L GD+I ++ E G
Sbjct: 10 CQVAFSYLPQNDDE--LELKVGDIIEVVGEVEEG 41
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 27.3 bits (61), Expect = 1.7
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
AL ++A + L+ +GD++
Sbjct: 9 LCKALYSFQARQDDE--LNLEKGDIV 32
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 27.0 bits (60), Expect = 1.7
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 124 GLKKRSSFVIALQDYKAPGEGSSFLSFHRGDLILLEE 160
+++R V A+ Y + +SF +GD+ ++
Sbjct: 3 HMRRR---VRAILPYTKVPDTDE-ISFLKGDMFIVHN 35
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 27.2 bits (60), Expect = 1.9
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 134 ALQDYKA----PGEGSSFLSFHRGDLILLEEGSTGE 165
Q+Y PG FL + GD++ L +
Sbjct: 9 VFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEH 44
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 27.5 bits (61), Expect = 1.9
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGDLI 156
F AL D+ ++ +GDL+
Sbjct: 16 FARALYDFVPENPEME-VALKKGDLM 40
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 29.3 bits (66), Expect = 2.0
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 28/112 (25%)
Query: 130 SFVIALQDYKAPGEGSSFLSFHRGDLILLEEGSTGETVFFMKKLWT--------NTVPGK 181
+ +AL DY++ E LSF +G+ + + + G+ + L T N V
Sbjct: 3 TTFVALYDYESRTETD--LSFKKGERLQIVNNTEGDW-WLAHSLSTGQTGYIPSNYVAPS 59
Query: 182 DRNADLIFHFHQELPKLLRGYHKCSKEEAAKL------AALVYRVRFGESKQ 227
D ++F K ++ E+ +L + VR E+ +
Sbjct: 60 DSIQAEEWYF-----------GKITRRESERLLLNAENPRGTFLVRESETTK 100
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 26.4 bits (59), Expect = 2.3
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI 156
A D+ G S L +GD+I
Sbjct: 3 FEAAYDFPGSGSPSE-LPLKKGDVI 26
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 27.5 bits (61), Expect = 2.3
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 132 VIALQDYKA--PGEGSSFLSFHRGDLI 156
A D+ A E +SF GD++
Sbjct: 20 ARAEYDFVAVSDEE----ISFRAGDML 42
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 28.7 bits (64), Expect = 3.3
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 11/137 (8%)
Query: 181 KDRNADLIFHFHQELPKLLRGYH-KCSKEEAAKLAALVYRVRFG-------ESKQELQAI 232
+D+ L F + Q + + +E A KL L R +G E K + +
Sbjct: 109 EDKPT-LNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVL 167
Query: 233 PQ--MLRELIPSDSIKIQSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAF 290
+ LR P + + ++ I + Q A ++ E++ + F +I+ F
Sbjct: 168 EKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKEC 227
Query: 291 FEVKQTTEPNYPEMLLI 307
F+ + L I
Sbjct: 228 FKCALGSSWIISVELAI 244
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 26.5 bits (58), Expect = 3.7
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 16/54 (29%)
Query: 132 VIALQDYKA----PGEGSSFLSFHRGDLILLEEG------------STGETVFF 169
+ Q+Y PG FL + GD++ L + +T E +F
Sbjct: 15 MEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWF 68
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 28.5 bits (64), Expect = 3.8
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 128 RSSFVIALQDYKAPGEGSSFLSFHRGD-LILLEEGSTGE 165
+ IA ++ E L F +GD L ++
Sbjct: 10 SGTECIAKYNFHGTAEQD--LPFCKGDVLTIVAVTKDPN 46
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 28.2 bits (63), Expect = 3.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGD-LILLEEGSTGE 165
+AL D+ A G+ + LS +G+ L +L GE
Sbjct: 45 LFVALYDFVASGDNT--LSITKGEKLRVLGYNHNGE 78
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 27.6 bits (61), Expect = 4.2
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 132 VIALQDYKAPGEGSSFLSFHRGDLI-LLEEGSTG 164
A+ DY+ ++ GD++ ++E+ +G
Sbjct: 14 YRAIADYEKTSGSE--MALSTGDVVEVVEKSESG 45
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 27.9 bits (63), Expect = 4.9
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 35/127 (27%)
Query: 200 RGY------HKCSKEEAAKLAALVYRVRFGE--SKQELQAIPQMLRE--LIPSDSIKI-- 247
RGY + S EE L ++Y G+ +K+EL + L E +P + +
Sbjct: 31 RGYNIEDLVNYGSYEETIYL--MLY----GKLPTKKELNDLKAKLNEEYEVPQEVLDTIY 84
Query: 248 ------------QSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQ 295
+ T +A+ +++ E+ K + II + T + + K+
Sbjct: 85 LMPKEADAIGLLEVGT----AALASIDKNF-KWKENDKEKAISIIAKMATLVANVYRRKE 139
Query: 296 TTEPNYP 302
+P P
Sbjct: 140 GNKPRIP 146
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 28.0 bits (63), Expect = 5.2
Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 35/127 (27%)
Query: 200 RGY------HKCSKEEAAKLAALVYRVRFGE--SKQELQAIPQMLRE--LIPSDSIKI-- 247
RGY K + L+Y GE + +++++ Q + +
Sbjct: 78 RGYPIEEWTQKSNYRTLCYA--LIY----GELPTDEQVKSFRQEIINKMPVCEHVKAAIA 131
Query: 248 ------------QSSTEWKRCIIAAYNQDAGMSPEDAKITFLKIIYRWPTFGSAFFEVKQ 295
+ ++AA + G E I+ + T + +
Sbjct: 132 AMPQHTHPMSSLIAGV----NVLAAEHIHNG-QKESQDEVAKNIVAKIATIAAMAYRHNH 186
Query: 296 TTEPNYP 302
+ P
Sbjct: 187 GKKFLEP 193
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 27.7 bits (62), Expect = 6.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 131 FVIALQDYKAPGEGSSFLSFHRGD-LILLEE 160
V+AL DY+A LSF +GD +++LEE
Sbjct: 10 IVVALYDYEAIHHED--LSFQKGDQMVVLEE 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,140,599
Number of extensions: 305851
Number of successful extensions: 815
Number of sequences better than 10.0: 1
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 163
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)