BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14291
(538 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357620639|gb|EHJ72769.1| hypothetical protein KGM_08405 [Danaus plexippus]
Length = 1103
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/295 (47%), Positives = 186/295 (63%), Gaps = 18/295 (6%)
Query: 253 DRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGT-DKK 311
DRDQ + E T+ A I E+ A+EL + V E E Q E G D+
Sbjct: 649 DRDQTVSEELATTQKA-VIPERQKISAEELNTM------VTEIENEEQLLLQEKGKLDRI 701
Query: 312 RRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
R + EAQELLQ+FG+P+IVAP EAEAQCA LE T G ITDDSDIWLFG RT
Sbjct: 702 GRNITEQMTKEAQELLQIFGIPYIVAPMEAEAQCAVLEALKLTDGTITDDSDIWLFGGRT 761
Query: 372 VYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
VYKNFF++K HVL++ I F L+REKL+ LALLVGSDYT G+ GVGPVTALEILA
Sbjct: 762 VYKNFFNQKKHVLQFLRERIEKSFNLSREKLVLLALLVGSDYTVGVTGVGPVTALEILAS 821
Query: 432 FS-------PSDSPNQNY--IVESMRRFKNWLAKKNKPDT-HLTRKLRNVKLNDDFPNVS 481
F D+ +Y IV ++ FK W+ + D L +KL+NV L+DDFP+V
Sbjct: 822 FPFNKKKTIAEDAKFTDYQEIVAGLQDFKKWVKAGRRTDNVSLKKKLKNVSLSDDFPSVR 881
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
V++AY +P++ + +K +WG PD+ LR +A KFGWSQ+++D+ + P++K++ +
Sbjct: 882 VVQAYFEPNVEKSSEKFSWGDPDITELREYARAKFGWSQHKLDEIIKPVIKRMQE 936
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 28/31 (90%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLW+L+E +GKPVPVETLENKVLAV I
Sbjct: 1 MGVTGLWRLIEPAGKPVPVETLENKVLAVDI 31
>gi|195473066|ref|XP_002088817.1| GE18773 [Drosophila yakuba]
gi|194174918|gb|EDW88529.1| GE18773 [Drosophila yakuba]
Length = 1237
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 178/304 (58%), Gaps = 58/304 (19%)
Query: 247 SSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306
+S L ++R +L +ER +Q R+ +I+++MS
Sbjct: 832 ASNLAQERKELEIERNRQDRMGMSISQRMS------------------------------ 861
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWL
Sbjct: 862 --------------IDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWL 907
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
FG RTVYKNFF + HVL + A I F R KLIQLA LVGSDYT G+ G+G VTAL
Sbjct: 908 FGGRTVYKNFFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTAL 967
Query: 427 EILAKFSPSDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKL 473
EILA FS D+ NQ+ +++++ +F++W L + L +KL+N++L
Sbjct: 968 EILASFSGQDANGPGVCNQS-VLQTLTKFRDWWQAHKSTNLPPGSSARHSLRKKLKNIEL 1026
Query: 474 NDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
++ FPNV+V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKK
Sbjct: 1027 HEGFPNVAVVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKK 1086
Query: 534 ISQR 537
I+++
Sbjct: 1087 INEK 1090
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 8/69 (11%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVD 84
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 148
Query: 85 MFELPPAPA 93
+F+LP PA
Sbjct: 149 LFKLPELPA 157
>gi|194863176|ref|XP_001970313.1| GG10553 [Drosophila erecta]
gi|190662180|gb|EDV59372.1| GG10553 [Drosophila erecta]
Length = 1237
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 160/236 (67%), Gaps = 15/236 (6%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 856 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 915
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HVL + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 916 NFFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 975
Query: 435 SDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVS 481
D+ NQ+ +++++ RF++W L + L +KL+N++L++ FPN +
Sbjct: 976 QDANGSGVCNQS-VLQTLVRFRDWWQAHKSSNLPPGSSARLSLRKKLKNIELHEGFPNGA 1034
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 1035 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 1090
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
>gi|195454489|ref|XP_002074261.1| GK18419 [Drosophila willistoni]
gi|194170346|gb|EDW85247.1| GK18419 [Drosophila willistoni]
Length = 1247
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 176/305 (57%), Gaps = 58/305 (19%)
Query: 247 SSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306
+++L ++R QL LER +Q R+ +I+++MS
Sbjct: 842 ATSLAQERKQLELERNRQDRMGMSISQRMS------------------------------ 871
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
++ QELL+LFG+P+IVAP EAEAQCA L T G ITDDSDIWL
Sbjct: 872 --------------IDCQELLRLFGIPYIVAPMEAEAQCAFLNATELTNGTITDDSDIWL 917
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
FG RTVYKNFF + HVL + + I F R KLIQLA LVGSDYT G+ G+G VTAL
Sbjct: 918 FGGRTVYKNFFAQNKHVLEFRSEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTAL 977
Query: 427 EILAKFS-----PS-DSPNQNYIVESMRRFKN-WLAKKNK---PDT----HLTRKLRNVK 472
EILA FS PS S ++E++ RF++ W A KN P + L +KL+N+
Sbjct: 978 EILASFSTATTVPSTQSICNQTVLETLTRFRDWWQAHKNSNLPPGSSARLSLRKKLKNID 1037
Query: 473 LNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L++ FP+ +V+EAYL P ++ N WGTPD+D +R FA FGW+ ++ D L+P++K
Sbjct: 1038 LHEGFPSSAVVEAYLDPKVDDNRDAFTWGTPDVDSIREFARKSFGWTTSKTDDILMPVIK 1097
Query: 533 KISQR 537
KI+ +
Sbjct: 1098 KINDK 1102
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
>gi|195155670|ref|XP_002018724.1| GL25951 [Drosophila persimilis]
gi|194114877|gb|EDW36920.1| GL25951 [Drosophila persimilis]
Length = 1238
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 175/303 (57%), Gaps = 60/303 (19%)
Query: 250 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTD 309
L ++R L +ER +Q R+ +I+++MS + QELL+LFG+P+IVAP EAEAQCA
Sbjct: 836 LAQERKDLEIERNRQDRMGMSISQRMSTDCQELLRLFGIPYIVAPMEAEAQCA------- 888
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
L A EL T G ITDDSDIWLFG
Sbjct: 889 ----------FLNATEL---------------------------THGTITDDSDIWLFGG 911
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
RTVYKNFF + HVL + A I F R KLIQLA LVGSDYT G+ G+G VTA+EIL
Sbjct: 912 RTVYKNFFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTAMEIL 971
Query: 430 AKF-------SPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLN 474
A F SP+ S NQ+ ++ ++ RF++W L + L +KL+N++L+
Sbjct: 972 ASFSTTLDASSPASSGNQS-VLATLVRFRDWWQAHKSTSLPPGSSARLALRKKLKNIELH 1030
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ FPN++V+EAYL P ++ N +WG+PD++ +R F FGW+ ++ D L P++KKI
Sbjct: 1031 EGFPNMAVVEAYLDPKVDDNRDAFSWGSPDVESIREFTRKSFGWTTSKTDDILQPVIKKI 1090
Query: 535 SQR 537
+++
Sbjct: 1091 NEK 1093
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 9/70 (12%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL-------PPPSVSR--EV 83
A+R+ ++K ++ AD++++ LL++L ++++ LGKN L PPPS S+ E
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAREKVVQQALGKNAELLLKSPVKRPPPSKSKNDED 148
Query: 84 DMFELPPAPA 93
D+F+LP PA
Sbjct: 149 DLFKLPELPA 158
>gi|198476637|ref|XP_002132415.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
gi|198137788|gb|EDY69817.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
Length = 1236
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 175/303 (57%), Gaps = 60/303 (19%)
Query: 250 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTD 309
L ++R L +ER +Q R+ +I+++MS + QELL+LFG+P+IVAP EAEAQCA
Sbjct: 834 LAQERKDLEIERNRQDRMGMSISQRMSTDCQELLRLFGIPYIVAPMEAEAQCA------- 886
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
L A EL T G ITDDSDIWLFG
Sbjct: 887 ----------FLNATEL---------------------------THGTITDDSDIWLFGG 909
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
RTVYKNFF + HVL + A I F R KLIQLA LVGSDYT G+ G+G VTA+EIL
Sbjct: 910 RTVYKNFFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTAMEIL 969
Query: 430 AKF-------SPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLN 474
A F SP+ S NQ+ ++ ++ RF++W L + L +KL+N++L+
Sbjct: 970 ASFSTTLDASSPASSGNQS-VLATLVRFRDWWQAHKSTSLPPGSSARLALRKKLKNIELH 1028
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ FPN++V+EAYL P ++ N +WG+PD++ +R F FGW+ ++ D L P++KKI
Sbjct: 1029 EGFPNMAVVEAYLDPKVDDNRDAFSWGSPDVESIREFTRKSFGWTTSKTDDILQPVIKKI 1088
Query: 535 SQR 537
+++
Sbjct: 1089 NEK 1091
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 9/70 (12%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL-------PPPSVSR--EV 83
A+R+ ++K ++ AD++++ LL++L ++++ LGKN L PPPS S+ E
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAREKVVQQALGKNAELLLKSPVKRPPPSKSKNDED 148
Query: 84 DMFELPPAPA 93
D+F+LP PA
Sbjct: 149 DLFKLPELPA 158
>gi|195339243|ref|XP_002036229.1| GM16947 [Drosophila sechellia]
gi|194130109|gb|EDW52152.1| GM16947 [Drosophila sechellia]
Length = 1108
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 15/236 (6%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 727 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 786
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 787 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 846
Query: 435 SDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVS 481
D+ NQ+ +++++ +F++W L + L +KL+N++L++ FP+ +
Sbjct: 847 QDANGPGICNQS-VLQTLIKFRDWWQAHKSSNLPPGSSARLSLRKKLKNIELHEGFPSGA 905
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 906 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 961
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 34 QRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVDM 85
+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D+
Sbjct: 90 RRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDDL 149
Query: 86 FELPPAPAQTVQDEEEDT 103
F+LP PA +VQD ++++
Sbjct: 150 FKLPELPAASVQDNQDES 167
>gi|195577623|ref|XP_002078668.1| GD23543 [Drosophila simulans]
gi|194190677|gb|EDX04253.1| GD23543 [Drosophila simulans]
Length = 1235
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 159/236 (67%), Gaps = 15/236 (6%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 854 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 913
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 914 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 973
Query: 435 SDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVS 481
D NQ+ +++++ +F++W L + L +KL+N++L++ FP+ +
Sbjct: 974 QDGNGPGICNQS-VLQTLIKFRDWWQAHKSSNLPPGSSARLSLRKKLKNIELHEGFPSGA 1032
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 1033 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 1088
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%), Gaps = 8/79 (10%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVD 84
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 148
Query: 85 MFELPPAPAQTVQDEEEDT 103
+F+LP PA VQD ++++
Sbjct: 149 LFKLPELPAAAVQDNQDES 167
>gi|78706850|ref|NP_001027230.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
gi|78706852|ref|NP_001027231.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|5051952|gb|AAD38375.1|AF144092_1 nucleotide excision repair protein MUS201 [Drosophila melanogaster]
gi|7297419|gb|AAF52678.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|28380312|gb|AAO41169.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
Length = 1236
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 15/236 (6%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 855 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 914
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 915 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 974
Query: 435 SDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVS 481
D+ NQ+ +++++ +F++W L + L +KL+N++L++ FP+ +
Sbjct: 975 QDANGPGICNQS-VLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGA 1033
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 1034 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 1089
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVD 84
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 148
Query: 85 MFELPPAPAQTVQDEEEDT 103
+F+LP PA +VQD ++++
Sbjct: 149 LFKLPELPAASVQDNQDES 167
>gi|5712619|gb|AAD47568.1|AF125578_1 DNA repair endonuclease [Drosophila melanogaster]
Length = 1236
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 15/236 (6%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 855 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 914
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 915 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 974
Query: 435 SDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVS 481
D+ NQ+ +++++ +F++W L + L +KL+N++L++ FP+ +
Sbjct: 975 QDANGPGICNQS-VLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGA 1033
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 1034 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 1089
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVD 84
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 148
Query: 85 MFELPPAPAQTVQDEEEDT 103
+F+LP PA +VQD ++++
Sbjct: 149 LFKLPELPAASVQDNQDES 167
>gi|5758314|gb|AAD50779.1|AF162792_1 XPG [Drosophila melanogaster]
Length = 1236
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 15/236 (6%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 855 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 914
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 915 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 974
Query: 435 SDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVS 481
D+ NQ+ +++++ +F++W L + L +KL+N++L++ FP+ +
Sbjct: 975 RDANGPGICNQS-VLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGA 1033
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 1034 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 1089
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVD 84
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 148
Query: 85 MFELPPAPAQTVQDEEEDT 103
+F+LP PA +VQ+ ++++
Sbjct: 149 LFKLPELPAASVQNNQDES 167
>gi|78706854|ref|NP_001027232.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
gi|10728671|gb|AAG22424.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
Length = 1257
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 15/236 (6%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 876 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 935
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 936 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 995
Query: 435 SDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVS 481
D+ NQ+ +++++ +F++W L + L +KL+N++L++ FP+ +
Sbjct: 996 QDANGPGICNQS-VLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGA 1054
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 1055 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 1110
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFT 144
MGV GLWKL+E GKPVPVETLE K+LAVG F+
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVGKHRFS 35
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVD 84
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D
Sbjct: 110 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 169
Query: 85 MFELPPAPAQTVQDEEEDT 103
+F+LP PA +VQD ++++
Sbjct: 170 LFKLPELPAASVQDNQDES 188
>gi|5758316|gb|AAD50780.1|AF162793_1 XPG variant [Drosophila melanogaster]
Length = 1257
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 15/236 (6%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 876 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 935
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 936 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 995
Query: 435 SDS-----PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVS 481
D+ NQ+ +++++ +F++W L + L +KL+N++L++ FP+ +
Sbjct: 996 RDANGPGICNQS-VLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGA 1054
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 1055 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 1110
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFT 144
MGV GLWKL+E GKPVPVETLE K+LAVG F+
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVGKHRFS 35
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVD 84
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D
Sbjct: 110 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 169
Query: 85 MFELPPAPAQTVQDEEEDT 103
+F+LP PA +VQ+ ++++
Sbjct: 170 LFKLPELPAASVQNNQDES 188
>gi|194760687|ref|XP_001962569.1| GF15526 [Drosophila ananassae]
gi|190616266|gb|EDV31790.1| GF15526 [Drosophila ananassae]
Length = 1237
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 157/235 (66%), Gaps = 13/235 (5%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 855 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNAADLTHGTITDDSDIWLFGGRTVYK 914
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HVL + + I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 915 NFFAQNKHVLEFRSEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 974
Query: 435 SDSPNQNY----IVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVSV 482
D Q +++++ +F++W L + L +KL+N++L++ FPN +V
Sbjct: 975 HDPSAQGVSNQSVLQTLIKFRDWWQAHKSSNLPPGSSARLALRKKLKNIELHEGFPNGAV 1034
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+EAYL P ++ N + +WG+PD++ +R F FGW+ ++ D L+P++KKI+ +
Sbjct: 1035 VEAYLTPTVDDNKEAFSWGSPDVELIREFTRKSFGWTASKTDDILMPVIKKINDK 1089
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL-------PPPSVSR--EV 83
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PPP S+ E
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPAKRPPPGKSKDNED 148
Query: 84 DMFELPPAPAQTVQDEEED 102
DMF+LP PA E D
Sbjct: 149 DMFKLPELPAAAAGTENPD 167
>gi|443703547|gb|ELU01026.1| hypothetical protein CAPTEDRAFT_17841 [Capitella teleta]
Length = 464
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 143/434 (32%), Positives = 224/434 (51%), Gaps = 102/434 (23%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDIL 169
MGV+GLW LL+++G+PV +E+LE KVLAV + + ++
Sbjct: 1 MGVHGLWHLLQSTGRPVTLESLEGKVLAVDVSMWMH---------------------QLM 39
Query: 170 EMIRAEEENEIEFEEEIAGGKEEKTEKIKLTREMLAEQQKILDSLVK--KKAKSDDVIDV 227
+ +R N + I G + K+ R + + D V KK +D++ID+
Sbjct: 40 KGMRDSHGNPVPNAHLI--GLYHRICKLLYYR---IKPVFVFDGGVPALKKQTTDELIDL 94
Query: 228 DLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFG 287
LE + +L R +Q R+A+++TEQM+ EAQEL++LFG
Sbjct: 95 -------------------QKVLEVENTELHNTRNQQDRMATSLTEQMNIEAQELVRLFG 135
Query: 288 VPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCAS 347
+P++V+P EAEAQCA L+L +
Sbjct: 136 LPYVVSPMEAEAQCAFLDLTS--------------------------------------- 156
Query: 348 LELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLAL 407
T G +TDDSDIWLFG R VYKN F+ K HV + D LTREKL+ +AL
Sbjct: 157 -----QTNGTVTDDSDIWLFGGRNVYKNLFNSKRHVEWFRFEDFEKQLFLTREKLVNMAL 211
Query: 408 LVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL----AKKNKPDTH 463
+ GSDYTPG+ GPV A+EI+ +F +P + S++ FK W K +T
Sbjct: 212 VCGSDYTPGIHNAGPVAAMEIMGEFP---APG----LRSLQLFKQWWDEAQTKVKVQETK 264
Query: 464 LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ KLR + +N+ FP+ +V++AY+ P ++ + + +WG PDLD LR++A N+FGW++ ++
Sbjct: 265 VKIKLRKLVINEGFPSEAVVDAYMNPTVDESREDFSWGRPDLDLLRQYAKNRFGWNKEKI 324
Query: 524 DQTLIPIMKKISQR 537
D++L+P+MK+I+ +
Sbjct: 325 DESLLPVMKQINAK 338
>gi|307176270|gb|EFN65901.1| DNA-repair protein complementing XP-G cells [Camponotus floridanus]
Length = 1193
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 156/217 (71%), Gaps = 7/217 (3%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EAQELL+LFG+P+IVAP EAEAQCA LE T G ITDDSDIWLFG + VYKNFF+
Sbjct: 825 EAQELLRLFGIPYIVAPMEAEAQCAYLEQIELTNGTITDDSDIWLFGGQYVYKNFFNNNR 884
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
VL++ A DI+++F+L+R +LIQLALLVGSDYT G+ G+GPVTALEILA F P++ N
Sbjct: 885 RVLQFHAYDIQHHFKLSRNQLIQLALLVGSDYTTGVAGIGPVTALEILAAF-PAEGDN-- 941
Query: 442 YIVESMRRFKNWLAKKNKPDTH--LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLA 499
I+ + +F +W+ K+ KP L KLRNVKL+ DFPN +V +AYL P I+ + +
Sbjct: 942 -ILHGLYKFCSWI-KEGKPSGKMGLRNKLRNVKLDRDFPNQAVAQAYLFPTIDESKETFT 999
Query: 500 WGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
WG P++ L + KFGW++ + D T++P++K++ +
Sbjct: 1000 WGKPNVVLLCDYTRQKFGWTKGKFDDTMVPVLKRLEE 1036
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 29/31 (93%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV+GLWKLLEASGKPVP+E+LE KVLA+ I
Sbjct: 1 MGVHGLWKLLEASGKPVPLESLEGKVLAIDI 31
>gi|307206657|gb|EFN84629.1| DNA-repair protein complementing XP-G cells [Harpegnathos saltator]
Length = 1139
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 155/221 (70%), Gaps = 9/221 (4%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+EAQELL+LFG+P++VAP EAEAQCA LE T G ITDDSDIWLFG R VYKNFF+
Sbjct: 766 IEAQELLRLFGIPYVVAPMEAEAQCAYLEQIKLTDGTITDDSDIWLFGGRCVYKNFFNNS 825
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
V ++ A DI+++F+LTR +LIQLALLVGSDYT G+ G+GPVTALEILA F P++ N
Sbjct: 826 KRVQQFRACDIQHHFKLTRNQLIQLALLVGSDYTTGVAGIGPVTALEILAAF-PAEGDN- 883
Query: 441 NYIVESMRRFKNWLAKKNK----PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
++ + F W+ KK K T L KLRNVKL+ DFP+ +V++AYL P I+ + +
Sbjct: 884 --VLHGLHNFCTWI-KKGKIAAPGKTGLRNKLRNVKLDKDFPSQAVVQAYLFPTIDESKE 940
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
WG P+ L + KFGW++ + D T+IP+++++ +R
Sbjct: 941 TFTWGKPNAVLLCDYTRQKFGWTKGKFDDTMIPVLRRMEER 981
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLW+LL+ASGKPV +E LE KVLA+ +
Sbjct: 1 MGVYGLWRLLDASGKPVVLENLEGKVLAIDV 31
>gi|5689765|emb|CAB52135.1| Nucleotide excision repair protein [Drosophila melanogaster]
Length = 378
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 155/230 (67%), Gaps = 14/230 (6%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYKNFF +
Sbjct: 3 IDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQN 62
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS--- 437
HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS D+
Sbjct: 63 KHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSGQDANGP 122
Query: 438 --PNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
NQ+ +++++ +F++W L + L +KL+N++L++ FP+ +V+EAYL
Sbjct: 123 GICNQS-VLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYL 181
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 182 APTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 231
>gi|195116755|ref|XP_002002917.1| GI10377 [Drosophila mojavensis]
gi|193913492|gb|EDW12359.1| GI10377 [Drosophila mojavensis]
Length = 1255
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 173/311 (55%), Gaps = 64/311 (20%)
Query: 247 SSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306
++ L +R +L ER +Q R+ +I+++MS + Q+LL+LFG+P+IVAP EAEAQCA
Sbjct: 839 ANNLAGERRELEAERNRQDRMGLSISQRMSSDCQDLLRLFGIPYIVAPMEAEAQCA---- 894
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
L G+ T G ITDDSDIWL
Sbjct: 895 -------------------FLNAVGI---------------------TNGTITDDSDIWL 914
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
FG RTVYKNFF + HVL + A I F R KLIQLA LVGSDYT G+ G+G VTAL
Sbjct: 915 FGGRTVYKNFFAQNKHVLEFRAEQIEKTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTAL 974
Query: 427 EILAKFSPSD-----SPNQ-------NYIVESMRRFKNW--------LAKKNKPDTHLTR 466
EILA FS S SPN ++ ++ +F+ W L + L +
Sbjct: 975 EILASFSTSTPNTELSPNSPSSGVSMQSVLSTLEKFREWWQAHKSSNLPIGSSARLSLLK 1034
Query: 467 KLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQT 526
KL+N++L++ FP+ SV+EAYL P ++ N +WG+PD++ +R F+ FGW+ ++ D
Sbjct: 1035 KLKNIELHEGFPSSSVVEAYLTPKVDDNRDAFSWGSPDVESIREFSRKSFGWTTSKTDDI 1094
Query: 527 LIPIMKKISQR 537
L+P+MKKI+++
Sbjct: 1095 LMPVMKKINEK 1105
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE KVLA+ I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAIDI 31
>gi|195397917|ref|XP_002057574.1| GJ18024 [Drosophila virilis]
gi|194141228|gb|EDW57647.1| GJ18024 [Drosophila virilis]
Length = 1238
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 179/316 (56%), Gaps = 70/316 (22%)
Query: 247 SSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306
+++L ++R +L ER +Q R+ +I+++MS + QELL+LFG+P+IVAP EAEAQCA
Sbjct: 846 ATSLAQERRELEAERNRQDRMGMSISQRMSNDCQELLRLFGIPYIVAPMEAEAQCA---- 901
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
L G+ T G ITDDSDIWL
Sbjct: 902 -------------------FLNAVGI---------------------TNGTITDDSDIWL 921
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
FG RTVYKNFF + HVL + A I F +R+KLIQLA LVGSDYT G+ G+G VTAL
Sbjct: 922 FGGRTVYKNFFAQNKHVLEFRAEQIEQTFNCSRDKLIQLACLVGSDYTTGIHGIGAVTAL 981
Query: 427 EILAKFSPSDSPNQNY-----------------IVESMRRFKN-WLAKKN-------KPD 461
EILA FS + +PN ++ ++ RF++ W A KN
Sbjct: 982 EILASFS-TLTPNTGPTTSSPSSSRPGAVSMQSVLSTLVRFRDWWQAHKNANIPIGSSAR 1040
Query: 462 THLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQN 521
L +KL+N++L++ FP+ SV+EAYL P ++ N +WG+PD++ +R F+ FGW+ +
Sbjct: 1041 LSLRKKLKNIELHEGFPSSSVVEAYLIPKVDENRDAFSWGSPDIESIREFSRKFFGWTTS 1100
Query: 522 RVDQTLIPIMKKISQR 537
+ D L+P++KKI+++
Sbjct: 1101 KTDDILMPVIKKINEK 1116
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE KVLAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAVDI 31
>gi|312377995|gb|EFR24684.1| hypothetical protein AND_10542 [Anopheles darlingi]
Length = 1428
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 174/299 (58%), Gaps = 55/299 (18%)
Query: 250 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTD 309
L ++ +L E+ KQ RL +IT+QM + ELLQLFGVP+IVAP EAEAQCA L
Sbjct: 897 LAQNERELEREKNKQNRLGVSITDQMRNDCMELLQLFGVPYIVAPMEAEAQCAFLN---- 952
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+EL T G ITDDSDIWLFG
Sbjct: 953 -------------------------------------QIEL---TDGTITDDSDIWLFGG 972
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ VYKNFF+++ VL +T I F++ R+KLIQLALLVGSDYT G+ G+G VTALEIL
Sbjct: 973 QKVYKNFFNQQKLVLEFTIEGIEQAFQMDRKKLIQLALLVGSDYTTGIHGIGAVTALEIL 1032
Query: 430 AKFSPS-DSPNQNYIVESM----RRFKN-WLAKKNKPDTHLTR-----KLRNVKLNDDFP 478
A F P+ + P + + SM R+F++ W +N T TR KL+N+ + + FP
Sbjct: 1033 ASFPPTPEQPGETSELMSMLSGLRKFRDWWQHSRNGTATTGTRIALKSKLKNIDIGEGFP 1092
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
N V+EAYLKP ++ + ++ WG PD D LR +A KFGW++++ D L+P++K++ +R
Sbjct: 1093 NTGVVEAYLKPTVDYSEEEFTWGYPDADRLRDYARQKFGWTRSKTDDILLPVLKRLDER 1151
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 28/31 (90%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E SGKPVP+ETLENKVLAV +
Sbjct: 1 MGVLGLWKLIEQSGKPVPLETLENKVLAVDV 31
>gi|242019297|ref|XP_002430098.1| DNA excision repair protein, putative [Pediculus humanus corporis]
gi|212515179|gb|EEB17360.1| DNA excision repair protein, putative [Pediculus humanus corporis]
Length = 1052
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/296 (42%), Positives = 175/296 (59%), Gaps = 55/296 (18%)
Query: 249 TLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGT 308
+LE+ ++ LLLE+G Q R A T+QM +A
Sbjct: 641 SLEEKQNNLLLEQGNQERHALNPTDQMYSDA----------------------------- 671
Query: 309 DKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
Q LL+LFGVP+IVAP EAEAQCA+L++ T+G ITDDSDIWLFG
Sbjct: 672 ---------------QALLKLFGVPYIVAPMEAEAQCAALDILGLTEGTITDDSDIWLFG 716
Query: 369 ARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
VYKNFF++K HVL YT+ +I+ F+L RE LI+LA+LVGSDYT GL G+GPVTA+EI
Sbjct: 717 GTVVYKNFFNQKKHVLEYTSLNIQKNFKLNREDLIRLAMLVGSDYTLGLTGIGPVTAMEI 776
Query: 429 LAKF-SPSDSPNQNYIVESMRRFKNWL---AKKN--KPDTHLTRKLRNVKLNDDFPNVSV 482
LA F SP+ N I+E + F++WL KN P T L K++N + FPN +V
Sbjct: 777 LACFPSPT-----NEILEGLENFRDWLLTGKTKNVGSPKTKLKNKIKNTVVLPGFPNRAV 831
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
EAYL P ++ + + +W P+LD ++ + K GWS ++ ++ L+P+MKK+ + +
Sbjct: 832 AEAYLHPQVDDSKEPFSWAKPNLDLIKHYVKAKIGWSYDKCNELLMPVMKKLEENA 887
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV+GLWKLLE SG+ VP+E L KVLAV +
Sbjct: 1 MGVHGLWKLLEPSGQMVPLECLAGKVLAVDV 31
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 24/102 (23%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDV---------LGKNEMALPPPSVSREV 83
A RK A A KVR L+KNLL+ + + + LG N ALP PS+ E
Sbjct: 89 AARKNQTGAAKLEAQKVREKLIKNLLKHEAVRQILANESSSAALGLNSFALPGPSI--EE 146
Query: 84 DMFELPPAPA-----------QTVQDEEED--TLENIYIMGV 112
D+++LP A + D+EED +ENIY + V
Sbjct: 147 DLYKLPAIAADYEEDSPFEETEMESDKEEDRRRIENIYSVDV 188
>gi|332029719|gb|EGI69598.1| DNA repair protein complementing XP-G cells-like protein
[Acromyrmex echinatior]
Length = 417
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 153/218 (70%), Gaps = 7/218 (3%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+AQ+LL+LFG+P+I+AP EAEAQCA LE T G ITDDSDIWLFG + VYKNFF+
Sbjct: 43 DAQDLLRLFGIPYIIAPMEAEAQCAYLEQIKLTDGTITDDSDIWLFGGQCVYKNFFNHNK 102
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+LR+ A DI+++F+L R +LIQLALLVGSDYT G+ GVGPVTALEILA F P+D N
Sbjct: 103 RMLRFRACDIQHHFKLNRNQLIQLALLVGSDYTTGVAGVGPVTALEILAAF-PADGDN-- 159
Query: 442 YIVESMRRFKNWLAKK---NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + F +W+ K T L KLRN+KLN DFPN ++++AYL P ++ + +
Sbjct: 160 -VLHGLHNFCSWIKKGMFVAPGKTGLRNKLRNLKLNKDFPNQAIVQAYLFPTVDESKETF 218
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
W P++ L + KFGW++++ D T+IP+++++ +
Sbjct: 219 TWDKPNVVLLCDYTRQKFGWTKDKFDNTMIPVLRRMKE 256
>gi|158299596|ref|XP_319693.4| AGAP008939-PA [Anopheles gambiae str. PEST]
gi|157013593|gb|EAA14799.5| AGAP008939-PA [Anopheles gambiae str. PEST]
Length = 1256
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 152/225 (67%), Gaps = 9/225 (4%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ ELLQ+FGVPFIVAP EAEAQCA L + T G ITDDSDIWLFG + VYKNFF+++
Sbjct: 893 DCMELLQIFGVPFIVAPMEAEAQCAFLNQLDMTDGTITDDSDIWLFGGKKVYKNFFNQQK 952
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS-DSPNQ 440
VL +T I F++ R+KLIQLALLVGSDYT G+ G+G VTALEILA F P+ + P +
Sbjct: 953 LVLEFTIEGIEQMFQMDRKKLIQLALLVGSDYTTGIHGIGAVTALEILASFPPTPEQPGE 1012
Query: 441 NYIVESM----RRFKNWLAKKNKPDT----HLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
+ SM R+F++W T L KL+N+++ + FP+ V+EAYL+P ++
Sbjct: 1013 TSEMMSMLSGLRKFRDWWHHGRNGATGTRISLKSKLKNIEIGEGFPSTGVVEAYLQPTVD 1072
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ ++ WG PD D LR +A KFGWSQ + + L+P++K++ +R
Sbjct: 1073 CSEEEFTWGYPDADRLRDYARQKFGWSQTKTNDILLPVLKRLDER 1117
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVG 139
MGV GLWKL+E SGKPVP++TLENKVLAVG
Sbjct: 1 MGVTGLWKLIEQSGKPVPLDTLENKVLAVG 30
>gi|195030390|ref|XP_001988051.1| GH10954 [Drosophila grimshawi]
gi|193904051|gb|EDW02918.1| GH10954 [Drosophila grimshawi]
Length = 1183
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 158/247 (63%), Gaps = 26/247 (10%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M + QELL+LFG+P+IVAP EAEAQCA L T G ITDDSDIWLFG RTVYK
Sbjct: 787 ISQRMSNDCQELLRLFGIPYIVAPMEAEAQCAFLNAVEITNGTITDDSDIWLFGGRTVYK 846
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HVL + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA F+
Sbjct: 847 NFFAQNKHVLEFRAEQIEQTFNCNRSKLIQLACLVGSDYTTGIHGIGAVTALEILASFTT 906
Query: 435 S--DSP--------------NQNYIVESMRRFKNWLAKKNKPD--------THLTRKLRN 470
S DS NQ+ ++ ++ +F++W ++ + L +KL+N
Sbjct: 907 SKLDSATTSLDTASNGSAITNQS-VLSTLVKFRDWWQSQHNANIPVGSTARISLRKKLKN 965
Query: 471 VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPI 530
+ L++ FP+ SV+EAYL P ++ +WG+PD++ +R FA FGW+ ++ D L+P+
Sbjct: 966 INLHEGFPSSSVVEAYLTPKVDETRDAFSWGSPDVESIREFARKFFGWTTSKTDDILMPV 1025
Query: 531 MKKISQR 537
MKKI+++
Sbjct: 1026 MKKINEK 1032
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE KVLAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAVDI 31
>gi|229577369|ref|NP_001153363.1| mutagen-sensitive 201 [Nasonia vitripennis]
Length = 1167
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 8/243 (3%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
E+E Q + LG +++ ++ +M LEAQELL+LFGVP+IVAP EAEAQCA LE T
Sbjct: 750 ESEQQKITSSLGKLERQAIDITDQMRLEAQELLRLFGVPYIVAPMEAEAQCAYLEQIKLT 809
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
G ITDDSDIWLFG VYKNFFD VL++ + DI ++F+L+R ++IQLALLVGSDYT
Sbjct: 810 DGTITDDSDIWLFGGHCVYKNFFDNNKRVLQFLSQDIEHHFKLSRREMIQLALLVGSDYT 869
Query: 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL--AKKNKP-DTHLTRKLRNV 471
GL GVGPVTALEILA F P++ + I+ +R F +W K P T L KL+NV
Sbjct: 870 NGLAGVGPVTALEILAAF-PTEGED---ILRGLRNFCSWFRAGKLTAPGKTTLRNKLKNV 925
Query: 472 KLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
++ FP+ +V++AYL P I+ + + +W P+L L +A KFGW++ + ++ + P+M
Sbjct: 926 QMEKGFPSQAVVQAYLSPTIDESKEPFSWSKPNLVLLADYAKQKFGWTKLKFEEIINPVM 985
Query: 532 KKI 534
K++
Sbjct: 986 KRL 988
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLW+LL+A+GKPVP+ETLE KVLA+ I + DRR
Sbjct: 1 MGVLGLWRLLDATGKPVPLETLEGKVLAIDISIWIHQVIQGYQDRR 46
>gi|170036109|ref|XP_001845908.1| DNA-repair protein complementing XP-G cells [Culex quinquefasciatus]
gi|167878599|gb|EDS41982.1| DNA-repair protein complementing XP-G cells [Culex quinquefasciatus]
Length = 1217
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 172/300 (57%), Gaps = 53/300 (17%)
Query: 247 SSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306
S L + +L E+ +Q RL +ITEQM ++ +LL+LFGVPFIVAP EAEAQCA L
Sbjct: 808 SLNLAQQERELEKEKNRQARLGMSITEQMQQDCMDLLKLFGVPFIVAPMEAEAQCAFLN- 866
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
+EL T G ITDDSDIWL
Sbjct: 867 ----------------------------------------QIEL---TDGTITDDSDIWL 883
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
FG +TVYKNFF+++ V+ +T I F++ R+KLIQLALLVGSDYT G+ G+G VTAL
Sbjct: 884 FGGKTVYKNFFNQQKLVMEFTIEGIERAFQMDRKKLIQLALLVGSDYTTGISGIGAVTAL 943
Query: 427 EILAKFSPS-----DSPNQNYIVESMRRFKNW--LAKKNKPDTHLT--RKLRNVKLNDDF 477
E+LA F P+ ++ ++ +R+F++W + N T +T KL+N++ + F
Sbjct: 944 EVLASFPPTPQKDGETTEMMSLLSGLRKFRDWWNHGRNNSVRTRITLKSKLKNIEFTEGF 1003
Query: 478 PNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P+ +++EAYL P ++ N +WG PD + LR FA KFGW Q + D L+P++K++ +R
Sbjct: 1004 PSSAIVEAYLYPTVDGNKDAFSWGYPDAESLRDFAKQKFGWPQAKTDDILLPVLKRLDER 1063
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 28/31 (90%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E SGKPVP+ETLENKVLAV I
Sbjct: 1 MGVTGLWKLVEQSGKPVPLETLENKVLAVDI 31
>gi|328791064|ref|XP_393585.4| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis mellifera]
Length = 1094
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 157/220 (71%), Gaps = 7/220 (3%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+EAQELLQLFG+P++VAP EAEAQCA LE + T G ITDDSDIWLFG + VYKNFFD
Sbjct: 733 IEAQELLQLFGIPYLVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQCVYKNFFDNN 792
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
VL + A DI++YF+LTR ++I+LALLVGSDYT GL G+GPVTALEILA F PS+ +
Sbjct: 793 KKVLEFRACDIQHYFKLTRNEMIRLALLVGSDYTTGLTGIGPVTALEILAAF-PSEGDD- 850
Query: 441 NYIVESMRRFKNWL--AKKNKP-DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
+++ + F +W+ K P T L KL+N+++ FP+ +V++AYL P ++ + +
Sbjct: 851 --LLQGLVNFCSWIENGKATGPGKTSLRTKLQNLEIQKGFPSQAVVQAYLSPMVDESKET 908
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+WG P+ L + KFGW +++ ++ ++P+MKK++++
Sbjct: 909 FSWGKPNFILLGNYVKLKFGWDKDKYNKIIVPVMKKLTEK 948
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLW+LL A+GK VP+ETLE KVLA+ I + DR
Sbjct: 1 MGVYGLWRLLNATGKQVPLETLEGKVLAIDISIWIHQVLQGYQDR 45
>gi|380025170|ref|XP_003696351.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis florea]
Length = 1095
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 156/220 (70%), Gaps = 7/220 (3%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+EAQELL+LFG+P++VAP EAEAQCA LE + T G ITDDSDIWLFG + VYKNFFD
Sbjct: 728 IEAQELLKLFGIPYLVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQCVYKNFFDNN 787
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
VL + A DI+ YF+LTR ++I+LALLVGSDYT GL G+GPVTALEILA F PS+ N
Sbjct: 788 KKVLEFRACDIQRYFKLTRNEMIRLALLVGSDYTTGLTGIGPVTALEILAAF-PSEGEN- 845
Query: 441 NYIVESMRRFKNWL--AKKNKP-DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
+++ + F +W+ K P T L KL+N+++ FP+ +V++AYL P ++ + +
Sbjct: 846 --LLQGLVNFCSWIENGKVAGPGKTSLRNKLQNLEIQKGFPSQAVVQAYLAPMVDESKET 903
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+WG P++ L +A KFGW +++ ++ + P++K++ ++
Sbjct: 904 FSWGKPNIIILGDYAKQKFGWDKDKYNKIITPVLKRLEEK 943
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLW+LL +GK VP+ETLE K+LA+ I + DR
Sbjct: 1 MGVYGLWRLLNTTGKQVPLETLEGKILAIDISIWIHQVLQGYQDR 45
>gi|350417449|ref|XP_003491427.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Bombus
impatiens]
Length = 1107
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 154/220 (70%), Gaps = 7/220 (3%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+EAQELL+LFG+P+I+AP EAEAQCA LE + G ITDDSDIWLFG + VYKNFFD
Sbjct: 740 IEAQELLRLFGIPYIIAPMEAEAQCAYLEQIHLIDGTITDDSDIWLFGGQCVYKNFFDNN 799
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
VL + + DI++YF+LTR ++I+LALLVGSDYT GL G+GPVTALEILA F PS+ +
Sbjct: 800 KKVLEFRSCDIQHYFKLTRNEMIRLALLVGSDYTTGLTGIGPVTALEILAAF-PSEGDD- 857
Query: 441 NYIVESMRRFKNWL--AKKNKP-DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
+++ + F +W+ K P +L KL+N+++ FP+ +V++AYL P ++ + +
Sbjct: 858 --LLQGLINFSSWIENGKTAGPGKANLRTKLQNLQIQKGFPSQAVVQAYLSPKVDESKET 915
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
WG P++ L + KFGW +N+ D+ + P++K++ ++
Sbjct: 916 FTWGKPNIILLADYVKQKFGWDKNKYDKIIEPVLKRLQEK 955
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLW+LL+A+GK VP+ETLE K+LA+ I + DR
Sbjct: 1 MGVYGLWRLLDATGKQVPLETLEGKILAIDISIWIHQVLQGYQDR 45
>gi|148226745|ref|NP_001081629.1| DNA repair protein complementing XP-G cells homolog [Xenopus laevis]
gi|50416246|gb|AAH77363.1| XPGC protein [Xenopus laevis]
Length = 1197
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 148/224 (66%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELLQLFG+P+IVAP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF +
Sbjct: 803 CLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSQ 862
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
HV Y DI L R KLI LA L+GSDYT G+ VG V+A+EIL +F P
Sbjct: 863 NKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEILNEF-----PG 917
Query: 440 QNYIVESMRRFKNWLA-----KKNKP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
Q +E + +FK W + KK +P DT + +KLR ++L FPN +V AYLKP +
Sbjct: 918 QG--LEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLELQQSFPNPAVASAYLKPVV 975
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + +WG PDL+ +R F ++FGW + + D+ L+P++K+++
Sbjct: 976 DESKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLPVLKQLN 1019
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+P+ TLE K+LAV I + DR+
Sbjct: 1 MGVQGLWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQ 46
>gi|267421|sp|P14629.1|ERCC5_XENLA RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=Xeroderma pigmentosum group G-complementing
protein homolog
gi|312433|emb|CAA49597.1| XP-G related factor [Xenopus laevis]
Length = 1196
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 147/224 (65%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELLQLFG+P+IVAP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF +
Sbjct: 802 CLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSQ 861
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
HV Y DI L R KLI LA L+GSDYT G+ VG V+A+EIL +F P
Sbjct: 862 NKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEILNEF-----PG 916
Query: 440 QNYIVESMRRFKNWLA-----KKNKP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
Q +E + +FK W + KK +P DT + +KLR + L FPN +V AYLKP +
Sbjct: 917 QG--LEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLDLQQSFPNPAVASAYLKPVV 974
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + +WG PDL+ +R F ++FGW + + D+ L+P++K+++
Sbjct: 975 DESKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLPVLKQLN 1018
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+P+ TLE K+LAV I + DR+
Sbjct: 1 MGVQGLWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQ 46
>gi|355686469|gb|AER98068.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mustela putorius furo]
Length = 1003
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 223/436 (51%), Gaps = 59/436 (13%)
Query: 121 ASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEI 180
+S + +P E + N AV FT L +E +D+ ++D++ + ++ E EI
Sbjct: 407 SSTQSIPSEAVSNLENAVS---FTSKEHENFLKTIQEHERMDSVDQDLISVPKSMEPMEI 463
Query: 181 EFEEEIAGGKEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDD--VIDVDLTETS--TSG 236
+ EE + G + + I E+ AE L K ++ D+ +I E + + G
Sbjct: 464 DSEESESDGSFIEVQSIISNEELQAE----LHEASKSPSRQDEEELIGTKKEEATGDSEG 519
Query: 237 FFDYG---CDVIKSSTLEKDRDQLLLE------RGKQTRLASTITEQMSREAQELLQLFG 287
CD EKD D L E +T +S +T+Q S EAQ+ Q
Sbjct: 520 LLRLSSGRCDSEPCEEAEKDTDSSLNEWKDINLEELETLESSLLTQQNSLEAQKQQQ--- 576
Query: 288 VPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCAS 347
E A++ + LE+QELL+LFG+P+I AP EAEAQCA
Sbjct: 577 ----------ERIAATV-----------TGQMFLESQELLRLFGIPYIEAPMEAEAQCAI 615
Query: 348 LELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLAL 407
L+L + T G ITDDSDIWLFGAR VYKNFF+K V Y D L R KLI LA
Sbjct: 616 LDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAY 675
Query: 408 LVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL--AKKNKP----- 460
L+GSDYT G+ VG VTA+EIL +F P +E + +F W A+KNK
Sbjct: 676 LLGSDYTEGIPTVGCVTAMEILNEFP---GPG----LEPLLKFSEWWHEAQKNKKIRPNP 728
Query: 461 -DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWS 519
DT + +KLR ++L FPN +V +AYLKP ++ + WG PDLD +R F FGW+
Sbjct: 729 YDTKVKKKLRKLQLTPGFPNPAVADAYLKPVVDESRGAFLWGKPDLDKIREFCQRYFGWN 788
Query: 520 QNRVDQTLIPIMKKIS 535
+ + D++L P++K+++
Sbjct: 789 RTKTDESLFPVLKQLN 804
>gi|410912947|ref|XP_003969950.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Takifugu rubripes]
Length = 875
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 145/223 (65%), Gaps = 15/223 (6%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
LE+QELLQLFGVPF+VAP EAEAQCA+L+ +HT G ITDDSD+WLFG R VYKNFF +
Sbjct: 476 LESQELLQLFGVPFLVAPMEAEAQCAALDRDDHTHGTITDDSDVWLFGGRHVYKNFFSQN 535
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V + D++ L R KLI LA L+GSDYT G+ GVG VT +E+L +F+ P
Sbjct: 536 KYVEYFQYSDLQNVLGLDRAKLINLAYLLGSDYTEGVAGVGYVTGMEVLNEFT---GPG- 591
Query: 441 NYIVESMRRFKNWLAKKNKP--------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
+E + +F W + + DT + +KLR +KL+ FPN +V +AYL+P ++
Sbjct: 592 ---LEPLIQFSKWWVEAQEKKRLVADPRDTKVKKKLRELKLHPGFPNPAVAQAYLQPCVD 648
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+WG P +D L+ F N+FGW+ R ++TL P+MK++S
Sbjct: 649 QAESSFSWGRPQVDMLKEFCLNRFGWNSRRTEETLQPVMKQLS 691
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV+GLW+LLE++GKP+ ETLE K+LAV I + + DR
Sbjct: 1 MGVHGLWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDR 45
>gi|383863581|ref|XP_003707258.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Megachile rotundata]
Length = 1072
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 149/222 (67%), Gaps = 7/222 (3%)
Query: 318 RKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF 377
R EAQELL+LFG+P+IVAP EAEAQCA LE + T G ITDDSDIWLFG + VYKNFF
Sbjct: 700 RIRTEAQELLRLFGIPYIVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQCVYKNFF 759
Query: 378 DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS 437
+ VL++ DI ++F+LTR ++IQLALLVGSDYT GL G+GPVTALEILA F PS
Sbjct: 760 NNNKKVLQFCLGDIEHHFKLTRNEMIQLALLVGSDYTVGLTGIGPVTALEILAAF-PSQG 818
Query: 438 PNQNYIVESMRRFKNWL--AKKNKP-DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
N +++ + F +W+ K P L KL+N+K++ FP+ +V++AYL P ++ +
Sbjct: 819 DN---LLQGLADFCSWVETGKVAAPGKAGLRTKLQNLKVHKGFPSQAVVQAYLFPKVDES 875
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
+ WG P++ L + KF W +N+ + + P+ K++ +
Sbjct: 876 KEGFTWGKPNMMLLYDYTKKKFAWDKNKFNAVMTPVQKRLEE 917
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLW+LL+ +GK VP+ETLE KVLA+ I + DR
Sbjct: 1 MGVYGLWRLLDKTGKQVPLETLEGKVLAIDISIWIHQVLQGYQDR 45
>gi|440901361|gb|ELR52322.1| DNA repair protein complementing XP-G cells [Bos grunniens mutus]
Length = 1202
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 144/224 (64%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 786 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 845
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 846 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 899
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E +R+F W A++NK DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 900 -GHGLEPLRKFSEWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVV 958
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 959 DESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 1002
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ + ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRH 46
>gi|78369362|ref|NP_001030353.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Bos taurus]
gi|77567831|gb|AAI07529.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Bos taurus]
gi|296481618|tpg|DAA23733.1| TPA: XPG-complementing protein [Bos taurus]
Length = 1201
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 144/224 (64%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 785 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 844
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 845 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 898
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E +R+F W A++NK DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 899 -GHGLEPLRKFSEWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVV 957
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 958 DESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 1001
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ + ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRH 46
>gi|405975699|gb|EKC40248.1| DNA repair protein complementing XP-G cells-like protein
[Crassostrea gigas]
Length = 1005
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 159/247 (64%), Gaps = 13/247 (5%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
E E + E G ++ +S +M LEAQ+LL+LFGVPF+++P EAEAQCA L+ N T
Sbjct: 613 ELETRALQQERGRQERLATSLSDQMYLEAQDLLKLFGVPFVLSPTEAEAQCAWLDSANLT 672
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
G ITDDSDIWLFG R VYKNFF++ V + I+ L RE I +ALL GSDYT
Sbjct: 673 NGTITDDSDIWLFGGRRVYKNFFNQDRTVELFMNDSIQSQLGLNREIFINMALLCGSDYT 732
Query: 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL-----AKKNKPDTHLTRKLR 469
G+ GVGPVTA+EIL++F +D + +++ FK+W K+N + + KLR
Sbjct: 733 DGIPGVGPVTAMEILSEFPAAD-------LSALQAFKSWWEETQKHKRNPKISKIRSKLR 785
Query: 470 NVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIP 529
+++++ FP+ +++AYLKP ++ + + +W PDLD LR +A K GW+Q + D+ L+P
Sbjct: 786 QLEVSEGFPDHRIVDAYLKPTVDDSKEAFSWALPDLDLLREYAKEKLGWAQVKTDEVLLP 845
Query: 530 IMKKISQ 536
+++K+ +
Sbjct: 846 VLQKLKE 852
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV+GLW LL+ +G+PV +++LE KVLAV +
Sbjct: 1 MGVHGLWHLLQPTGRPVSLQSLEGKVLAVDV 31
>gi|338715323|ref|XP_001494708.3| PREDICTED: DNA repair protein complementing XP-G cells [Equus
caballus]
Length = 1190
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 774 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 833
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 834 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 887
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 888 -GHGLEPLLKFSEWWNEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVV 946
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D+TL P++K+++
Sbjct: 947 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDETLFPVLKQLN 990
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG+ V ETLE K+LAV I
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDI 31
>gi|426236893|ref|XP_004012399.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells [Ovis aries]
Length = 1200
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 144/224 (64%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 777 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 836
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 837 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 890
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E +++F W A++NK DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 891 -GHGLEPLQKFSEWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVV 949
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 950 DESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 993
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ + ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRH 46
>gi|281350378|gb|EFB25962.1| hypothetical protein PANDA_002828 [Ailuropoda melanoleuca]
Length = 1192
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 777 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 836
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 837 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 890
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 891 -GHGLEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVV 949
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 950 DDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 993
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV+GLWKLLE SG+ V ETLE K+LAV I
Sbjct: 1 MGVHGLWKLLECSGRQVNPETLEGKILAVDI 31
>gi|359322522|ref|XP_003639860.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Canis
lupus familiaris]
Length = 1185
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 770 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 829
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 830 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 883
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 884 -GHGLEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVV 942
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 943 DDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 986
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV+GLWKLLE SG+ V ETLE K+LAV I
Sbjct: 1 MGVHGLWKLLECSGRQVSPETLEGKILAVDI 31
>gi|194378226|dbj|BAG57863.1| unnamed protein product [Homo sapiens]
Length = 1018
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 601 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 660
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 661 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 714
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 715 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 773
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 774 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 816
>gi|348516587|ref|XP_003445820.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oreochromis niloticus]
Length = 1119
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 145/223 (65%), Gaps = 15/223 (6%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
LE+QELL+LFGVP++VAP EAEAQCA+L+ +HT G ITDDSD+WLFG R VYKNFF +
Sbjct: 729 LESQELLRLFGVPYLVAPMEAEAQCAALDWADHTHGTITDDSDVWLFGGRHVYKNFFSQD 788
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V Y D++ L R K+I LA L+GSDYT G+ GVG VT +EIL +F P
Sbjct: 789 KYVEHYQYSDLQSQLGLDRTKMINLAYLLGSDYTEGVPGVGYVTGMEILNEFP---GPG- 844
Query: 441 NYIVESMRRFKNWLAKKNKP--------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
+E + +F NW ++ + DT + +KLR+VKL FPN V +AYL P ++
Sbjct: 845 ---LEPLIQFSNWWSEAQEKKRLVSDPRDTKVKKKLRDVKLQPGFPNPVVAQAYLHPTVD 901
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ +WG P LD ++ F ++FGWS + ++TL P++K+++
Sbjct: 902 QSESFFSWGRPQLDMIKEFCLSRFGWSSRKTEETLQPVIKQLN 944
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEE---- 165
MGV+GLW+LLE++GKP+ ETLE K+LAV I + + DR E N +
Sbjct: 1 MGVHGLWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDR--EGNSVHNAHLLTL 58
Query: 166 -KDILEMIRAEEENEIEFEEEIAGGKEE-----KTEKIKLTREMLAEQQKILDSLVKKKA 219
I +++ F+ + K++ + K +LTRE +K+L + +K++A
Sbjct: 59 FHRICKLLFFRIRPVFVFDGDAPLLKKQTLALRRQRKEELTRESRNTNEKLLKTFLKRQA 118
>gi|60811379|gb|AAX36171.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
Length = 1187
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 208/396 (52%), Gaps = 76/396 (19%)
Query: 161 IDAEEKDI------LEMIRAEEENEIEFEEEIAGGKEEKTEKIKLTREMLAEQQKILDSL 214
ID+EE + ++ + ++EE + EF E E+ E++ TRE A + +SL
Sbjct: 643 IDSEESESDGSFIEVQSVISDEELQAEFPETSKPSSEQGEEELVGTREGEAPAES--ESL 700
Query: 215 VKKKAKSDDV------IDVDLTETSTSGFFDYGCDVIKS--STLEKDRDQLLLERGKQTR 266
++ ++ DDV + D E S + D + +++ S L ++ L ++ +Q R
Sbjct: 701 LRDNSERDDVDGEPQEAEKD-AEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQER 759
Query: 267 LASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQEL 326
+A+T+T QM LE+QEL
Sbjct: 760 IAATVTGQM--------------------------------------------FLESQEL 775
Query: 327 LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 386
L+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K V Y
Sbjct: 776 LRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYY 835
Query: 387 TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
D L R KLI LA L+GSDYT G+ VG VTA+EIL +F + +E
Sbjct: 836 QYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP-------GHGLEP 888
Query: 447 MRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+ +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP ++ +
Sbjct: 889 LLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSF 948
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 949 LWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|332242072|ref|XP_003270208.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Nomascus leucogenys]
Length = 1189
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P DT + +KLR ++L FPN ++ EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAIAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LA+ I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAIDISIWLNQALKGVRDRH 46
>gi|51988900|ref|NP_000114.2| DNA repair protein complementing XP-G cells [Homo sapiens]
gi|21619256|gb|AAH31522.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Homo sapiens]
gi|24079971|gb|AAN46091.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Homo sapiens]
gi|61364768|gb|AAX42600.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
gi|123981830|gb|ABM82744.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [synthetic
construct]
gi|123996661|gb|ABM85932.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [synthetic
construct]
Length = 1186
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|298111|emb|CAA49598.1| XP-G factor [Homo sapiens]
gi|119629476|gb|EAX09071.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)), isoform
CRA_a [Homo sapiens]
Length = 1186
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|205371791|sp|P28715.3|ERCC5_HUMAN RecName: Full=DNA repair protein complementing XP-G cells; AltName:
Full=DNA excision repair protein ERCC-5; AltName:
Full=Xeroderma pigmentosum group G-complementing protein
gi|9587154|gb|AAF89179.1| xeroderma pigmentosum complementation group G protein splice
variant [Homo sapiens]
Length = 1186
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|33187721|gb|AAP97715.1|AF462447_1 excision repair protein ERCC5 [Homo sapiens]
gi|306742|gb|AAC37533.1| excision repair protein [Homo sapiens]
Length = 1186
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|410215558|gb|JAA04998.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410261564|gb|JAA18748.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410301776|gb|JAA29488.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410335601|gb|JAA36747.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
Length = 1186
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|77736641|ref|NP_001029995.1| XPG-complementing protein [Gallus gallus]
gi|71725078|dbj|BAE16755.1| XPG [Gallus gallus]
Length = 1118
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 145/224 (64%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSD+WLFGAR VYKNFF +
Sbjct: 723 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFSR 782
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+V Y D + L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 783 NKYVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNEFP------ 836
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L+ FPN +V EAYLKP +
Sbjct: 837 -GHGLEPLLKFAEWWNEAQKNKKIRPNPRDTKVKKKLRELQLSSGFPNPAVAEAYLKPVV 895
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ WG PD++ +R F + FGW++ + D+ L+P++K+++
Sbjct: 896 DETRGSFIWGKPDVEQIREFCKDHFGWTRTKTDEILLPVIKQLN 939
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE +G+PV ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRH 46
>gi|332841607|ref|XP_003314253.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Pan troglodytes]
Length = 1186
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|326913904|ref|XP_003203272.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Meleagris gallopavo]
Length = 1121
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 144/224 (64%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSD+WLFGAR VYKNFF +
Sbjct: 723 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFSQ 782
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+V Y D + L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 783 NKYVEYYQYVDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNEFP------ 836
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L+ FPN +V EAYLKP +
Sbjct: 837 -GHGLEPLLKFAEWWNEAQKNKKIRPNPRDTRVKKKLRELQLSSGFPNPAVAEAYLKPVV 895
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ WG PD++ +R F + FGW++ + D L+P++K+++
Sbjct: 896 DETRGSFTWGKPDVEQIREFCKDHFGWTRTKTDDILLPVIKQLN 939
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE +G+P+ E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECTGRPINPEILEGKILAVDISIWLNQAIKGVRDRH 46
>gi|426375915|ref|XP_004054761.1| PREDICTED: DNA repair protein complementing XP-G cells [Gorilla
gorilla gorilla]
Length = 1186
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|324715041|ref|NP_001191354.1| BIVM-ERCC5 protein [Homo sapiens]
Length = 1640
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 208/396 (52%), Gaps = 76/396 (19%)
Query: 161 IDAEEKDI------LEMIRAEEENEIEFEEEIAGGKEEKTEKIKLTREMLAEQQKILDSL 214
ID+EE + ++ + ++EE + EF E E+ E++ TRE A + +SL
Sbjct: 1097 IDSEESESDGSFIEVQSVISDEELQAEFPETSKPPSEQGEEELVGTREGEAPAES--ESL 1154
Query: 215 VKKKAKSDDV------IDVDLTETSTSGFFDYGCDVIKS--STLEKDRDQLLLERGKQTR 266
++ ++ DDV + D E S + D + +++ S L ++ L ++ +Q R
Sbjct: 1155 LRDNSERDDVDGEPQEAEKD-AEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQER 1213
Query: 267 LASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQEL 326
+A+T+T QM LE+QEL
Sbjct: 1214 IAATVTGQM--------------------------------------------FLESQEL 1229
Query: 327 LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 386
L+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K V Y
Sbjct: 1230 LRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYY 1289
Query: 387 TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
D L R KLI LA L+GSDYT G+ VG VTA+EIL +F + +E
Sbjct: 1290 QYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP-------GHGLEP 1342
Query: 447 MRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+ +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP ++ +
Sbjct: 1343 LLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSF 1402
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 1403 LWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 1438
>gi|62088204|dbj|BAD92549.1| DNA-repair protein complementing XP-G cells variant [Homo sapiens]
Length = 1611
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 208/396 (52%), Gaps = 76/396 (19%)
Query: 161 IDAEEKDI------LEMIRAEEENEIEFEEEIAGGKEEKTEKIKLTREMLAEQQKILDSL 214
ID+EE + ++ + ++EE + EF E E+ E++ TRE A + +SL
Sbjct: 1068 IDSEESESDGSFIEVQSVISDEELQAEFPETSKPPSEQGEEELVGTREGEAPAES--ESL 1125
Query: 215 VKKKAKSDDV------IDVDLTETSTSGFFDYGCDVIKS--STLEKDRDQLLLERGKQTR 266
++ ++ DDV + D E S + D + +++ S L ++ L ++ +Q R
Sbjct: 1126 LRDNSERDDVDGEPQEAEKD-AEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQER 1184
Query: 267 LASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQEL 326
+A+T+T QM LE+QEL
Sbjct: 1185 IAATVTGQM--------------------------------------------FLESQEL 1200
Query: 327 LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 386
L+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K V Y
Sbjct: 1201 LRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYY 1260
Query: 387 TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
D L R KLI LA L+GSDYT G+ VG VTA+EIL +F + +E
Sbjct: 1261 QYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP-------GHGLEP 1313
Query: 447 MRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+ +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP ++ +
Sbjct: 1314 LLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSF 1373
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 1374 LWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 1409
>gi|348583617|ref|XP_003477569.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells-like [Cavia porcellus]
Length = 1169
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 144/226 (63%), Gaps = 7/226 (3%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M LE+QELL+LFGVP+I AP EAEAQCA L+L + T G IT+DSDIWLFGAR VYK
Sbjct: 746 VSGQMFLESQELLRLFGVPYIQAPMEAEAQCAILDLTDQTSGTITEDSDIWLFGARHVYK 805
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF+K V Y D L R KLI LA L+GSDYT G+ VG +TA+EIL +F P
Sbjct: 806 NFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCITAMEILNEF-P 864
Query: 435 SDSPNQNYIVESMRRF-----KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
N I R + KN + N DT + +KLR ++L FPN +V +AYL+P
Sbjct: 865 GHGMNLCLIASRYREWWQEAQKNPKIRPNPHDTKVKKKLRKLQLTPGFPNPAVADAYLRP 924
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
++ + WG PD+D +R F FGWS+ + D++L P++K++S
Sbjct: 925 VVDDSKGSFLWGRPDVDKIREFCQRYFGWSRTKTDESLFPVLKQLS 970
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE+SG+ V E LE KVLAV I + + DR+
Sbjct: 1 MGVQGLWKLLESSGRQVSPEALEGKVLAVDISIWLNQALKGVRDRQ 46
>gi|390457518|ref|XP_002742570.2| PREDICTED: DNA repair protein complementing XP-G cells [Callithrix
jacchus]
Length = 1638
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 144/224 (64%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 1223 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 1282
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 1283 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 1336
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 1337 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTAGFPNPAVAEAYLKPVV 1395
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 1396 DDSQASYLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 1439
>gi|397524400|ref|XP_003832181.1| PREDICTED: DNA repair protein complementing XP-G cells [Pan paniscus]
Length = 1754
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 207/395 (52%), Gaps = 74/395 (18%)
Query: 161 IDAEEKDI------LEMIRAEEENEIEFEEEIAGGKEEKTEKIKLTREMLAEQQKILDSL 214
ID+EE + ++ + ++EE + EF E E+ E++ TRE A + +SL
Sbjct: 1211 IDSEESESDGSFIEVQSVISDEELQAEFPETSKPPSEQGEEELVGTREGEAPAES--ESL 1268
Query: 215 VKKKAKSDDVIDV-----DLTETSTSGFFDYGCDVIKS--STLEKDRDQLLLERGKQTRL 267
++ ++ DDV + E S + D + +++ S L ++ L ++ +Q R+
Sbjct: 1269 LRDNSERDDVDGEPQEAEEDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERI 1328
Query: 268 ASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELL 327
A+T+T QM LE+QELL
Sbjct: 1329 AATVTGQM--------------------------------------------FLESQELL 1344
Query: 328 QLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYT 387
+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K V Y
Sbjct: 1345 RLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQ 1404
Query: 388 APDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESM 447
D L R KLI LA L+GSDYT G+ VG VTA+EIL +F + +E +
Sbjct: 1405 YVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP-------GHGLEPL 1457
Query: 448 RRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLA 499
+F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP ++ +
Sbjct: 1458 LKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFL 1517
Query: 500 WGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 1518 WGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 1552
>gi|402902426|ref|XP_003914105.1| PREDICTED: DNA repair protein complementing XP-G cells [Papio anubis]
Length = 1814
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 1401 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 1460
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 1461 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 1514
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 1515 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 1573
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 1574 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 1616
>gi|301758086|ref|XP_002914899.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Ailuropoda melanoleuca]
Length = 1644
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 1229 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 1288
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 1289 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 1342
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 1343 -GHGLEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVV 1401
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 1402 DDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 1445
>gi|294459945|ref|NP_001170894.1| DNA repair protein complementing XP-G cells [Taeniopygia guttata]
Length = 1176
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 144/224 (64%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSD+WLFG R VYKNFF +
Sbjct: 775 FLESQELLRLFGIPYIEAPTEAEAQCALLDLTDQTSGTITDDSDVWLFGGRHVYKNFFSQ 834
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
++ Y D + L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 835 NKYIEYYQYVDFQNELGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNEFP------ 888
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L FPN +V EAYLKP +
Sbjct: 889 -GHGLEPLLKFAEWWNEAQKNKKVMPNPHDTKVKKKLRELQLYSGFPNPAVAEAYLKPVV 947
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD++ +R F + FGW++ ++D L+P+MK+++
Sbjct: 948 DESRGSFTWGKPDVEQIREFCKDHFGWTRTKIDGILLPVMKQLN 991
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE +G+P+ ETLE K+LAV I
Sbjct: 1 MGVQGLWKLLECTGRPINPETLEGKILAVDI 31
>gi|410947676|ref|XP_003980569.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells [Felis catus]
Length = 1128
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 713 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 772
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 773 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 826
Query: 440 QNYIVESMRRFKNWL-----AKKNKP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W +KK +P DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 827 -GHGLEPLLKFSEWWHEAQKSKKIRPDPYDTKVXKKLRKLQLTPGFPNPAVADAYLKPVV 885
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 886 DDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 929
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG+ V ETLE K+LAV I
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDI 31
>gi|297274789|ref|XP_002800868.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 2
[Macaca mulatta]
Length = 1040
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 627 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 686
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 687 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 740
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 741 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 799
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDL+ +R F FGW++ + D++L P++K++
Sbjct: 800 DDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQL 842
>gi|297694381|ref|XP_002824460.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing XP-G
cells [Pongo abelii]
Length = 1899
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 1482 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 1541
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 1542 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 1595
Query: 440 QNYIVESMRRFKNWL--AKKN---KP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P DT + +KLR ++L FPN +V EAYLKP +
Sbjct: 1596 -GHGLEPLLKFSEWWHEAQKNPKIRPNPYDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 1654
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 1655 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 1697
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 107 IYIMGVNGLWKLLEASGKPVPVETLENKVLAVGIL 141
+ +MGV GLWKLLE SG+ V E LE K+LAVGIL
Sbjct: 714 LRLMGVQGLWKLLECSGRQVSPEALEGKILAVGIL 748
>gi|297274787|ref|XP_001096257.2| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Macaca mulatta]
Length = 1182
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P DT + +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDL+ +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG+ V E LE K+LAV I
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDI 31
>gi|380810474|gb|AFE77112.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
gi|383416485|gb|AFH31456.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
Length = 1182
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDL+ +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG+ V E LE K+LAV I
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDI 31
>gi|403272924|ref|XP_003928284.1| PREDICTED: DNA repair protein complementing XP-G cells [Saimiri
boliviensis boliviensis]
Length = 1638
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 145/224 (64%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 1222 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 1281
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 1282 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 1336
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN ++ EAYLKP +
Sbjct: 1337 RG--LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAIAEAYLKPVV 1394
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 1395 DDSQGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 1438
>gi|417406083|gb|JAA49718.1| Putative 5'-3' exonuclease [Desmodus rotundus]
Length = 1189
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 776 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 835
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 836 NKFVEYYQYVDFHNQLGLDRNKLIILAYLLGSDYTEGVPTVGCVTAMEILNEF-----PG 890
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
Q +E + F W A+KNK DT + +KLR ++L FPN +V +AYLKP +
Sbjct: 891 QG--LEPLLNFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLQLPLGFPNTAVADAYLKPVV 948
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 949 DDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQMN 992
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ + ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRH 46
>gi|432852332|ref|XP_004067195.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oryzias latipes]
Length = 1078
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 145/223 (65%), Gaps = 15/223 (6%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
LE+QELL+LFGVPF+VAP EAEAQCA+L+ + T G ITDDSD+WLFG R VYKNFF +
Sbjct: 691 LESQELLRLFGVPFLVAPMEAEAQCAALDRADQTHGTITDDSDVWLFGGRHVYKNFFSQN 750
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V Y D++ L R K+I LA L+GSDY G+ GVG VT +EIL +F P
Sbjct: 751 KYVEHYQYSDLQNQLGLDRAKMINLAYLLGSDYAEGVPGVGYVTGMEILNEFP---GPG- 806
Query: 441 NYIVESMRRFKNWL--AKKNK------PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
+E +++F W A++NK DT + +KLR +KL FPN +V +AYL+P ++
Sbjct: 807 ---LEPLKQFSQWWSQAQENKRLTADPQDTKVKKKLRALKLQSGFPNPAVAQAYLEPAVD 863
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ +WG P LD ++ F ++FGWS + ++ L P++K+++
Sbjct: 864 PSCSSFSWGRPQLDVIKEFCLSRFGWSSRKTEEILQPVVKQLN 906
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV+GLW+LLE++GKP+ ETLE K+LAV I + + DR
Sbjct: 1 MGVHGLWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDR 45
>gi|431913228|gb|ELK14910.1| DNA repair protein complementing XP-G cell [Pteropus alecto]
Length = 1074
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 141/224 (62%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF K
Sbjct: 661 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSK 720
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 721 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 774
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR + L+ FPN ++ +AYLKP +
Sbjct: 775 -GHGLEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLHLSPGFPNPAIADAYLKPVV 833
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD + F FGW++ + D++L P++K+++
Sbjct: 834 DDSKGSFLWGKPDLDKISIFCQRYFGWNRTKTDESLFPVLKQLN 877
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGIL 141
MGV GLWKLLE SG+ + ETLE K+LAV IL
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDIL 32
>gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum]
Length = 951
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 151/239 (63%), Gaps = 4/239 (1%)
Query: 302 ASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
ASL+ +D+ + E + LL+LFG+P+I AP EAEAQCA LE T+G +TDD
Sbjct: 646 ASLQRKSDRMASSVTQKITSEIKGLLKLFGIPYITAPMEAEAQCAFLEKIGRTEGTVTDD 705
Query: 362 SDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVG 421
SD+WLFGA VYK+FFD + +V ++ + DI+ F L+R IQLA LVGSDYT G+ G+G
Sbjct: 706 SDVWLFGANVVYKDFFDNQKYVKQFKSIDIKQQFALSRNSFIQLAFLVGSDYTNGIDGIG 765
Query: 422 PVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNK--PDTHLTRKLRNVKLNDDFPN 479
PV+A+EIL+ F S + N N I E + + K K + D +KL++ K+ +DFPN
Sbjct: 766 PVSAIEILS-FFESKTKNMN-IEEKLLKIKEIANSKAEVYCDIPFMKKLKSTKIGNDFPN 823
Query: 480 VSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+VI AYL P +N + + WGT +D + +FA F W ++ L P++KK+++R+
Sbjct: 824 KAVINAYLHPIVNESNESFNWGTLQVDSIIQFAQTNFDWDVSKTKSKLAPVLKKVAERT 882
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE++GKP+PVE LENKVL++ +
Sbjct: 1 MGVQGLWKLLESAGKPIPVEKLENKVLSIDV 31
>gi|9930001|dbj|BAB12157.1| hypothetical protein [Macaca fascicularis]
Length = 415
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 2 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 61
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 62 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 115
Query: 440 QNYIVESMRRFKNWL--AKKN---KP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P DT + +KLR ++L FPN +V EAYLKP +
Sbjct: 116 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 174
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDL+ +R F FGW++ + D++L P++K++
Sbjct: 175 DDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQL 217
>gi|344284659|ref|XP_003414082.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Loxodonta africana]
Length = 1636
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 141/224 (62%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 1222 FLESQELLRLFGVPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 1281
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 1282 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 1335
Query: 440 QNYIVESMRRFKNWLA-----KKNKP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W KK +P DT + +KLR ++L FPN +V EAYLKP +
Sbjct: 1336 -GHGLEPLLKFSEWWHEAQDNKKIRPNPYDTKVKKKLRKLQLMPGFPNPAVAEAYLKPVV 1394
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDL +R F FGW++ + D++L P++K+++
Sbjct: 1395 DDSRGSFLWGKPDLGKIREFCQRYFGWNRTKTDESLFPVLKQLN 1438
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 103 TLENIYIMGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
+ E+ MGV GLWKLLE SG+ + E+LE K+LAV I
Sbjct: 427 SAEDTCPMGVQGLWKLLECSGRQISPESLEGKILAVDI 464
>gi|345324376|ref|XP_001513433.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Ornithorhynchus anatinus]
Length = 1520
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+PFI AP EAEAQCA L+L + T G ITDDSD+WLFGAR VYKNFF+K
Sbjct: 1108 FLESQELLRLFGIPFIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFNK 1167
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+ Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 1168 NKFIEYYQYGDFYNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 1221
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + F W A+KNK DT + +KLR ++L FPN +V EAYL+P +
Sbjct: 1222 -GHGLEPLLHFSEWWNEAQKNKKIRPNPHDTKVKKKLRQLQLAPGFPNPAVAEAYLRPVV 1280
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD + +R+F FGW++ + D++L+P++K+++
Sbjct: 1281 DESRGAFLWGKPDAEKIRQFCQRYFGWNKTKTDESLLPVLKQLN 1324
>gi|334346854|ref|XP_001376389.2| PREDICTED: hypothetical protein LOC100025456 [Monodelphis domestica]
Length = 1410
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF K
Sbjct: 923 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSK 982
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 983 DKFVEYYQYVDFHNQLGLDRSKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 1036
Query: 440 QNYIVESMRRFKNWL-----AKKNKPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W KK +P+ H T +KLR ++L+ FPN +V EAYLKP +
Sbjct: 1037 -GHGLEPLLKFSEWWNEAQKIKKIRPNPHDTKVKKKLRQLQLSPGFPNPAVAEAYLKPVV 1095
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDL+ +R F FGW++ + D++L+P++K+++
Sbjct: 1096 DDSKGAFLWGKPDLEKIREFCQRYFGWNRTKTDESLLPVLKQLN 1139
>gi|367019746|ref|XP_003659158.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
gi|347006425|gb|AEO53913.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
Length = 1244
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 164/296 (55%), Gaps = 35/296 (11%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL E + R AS + ++ RE QE E E + + D++
Sbjct: 821 QLAEEAEEHARFASQLNKKSQRENQEAY------------ERELRALRTQQKKDRRDADE 868
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V++ M+ E Q LL LFG+P+I AP EAEAQCA L G++TDDSD +LFG VYK
Sbjct: 869 VTQVMVTECQALLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYK 928
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F+ +V Y A D+ L+RE+LI LA L+GSDYT GL GVGPVTALEIL++F
Sbjct: 929 NMFNSNKYVECYLAKDLETELSLSREQLIALAQLLGSDYTEGLPGVGPVTALEILSEF-- 986
Query: 435 SDSPNQNYIVESMRRFKNWL--------AKKNKPDTHLTRKLRNVK-----LNDDFPNVS 481
P ++ + E F++W K+ D+ RK R L FPN +
Sbjct: 987 ---PGRDGLAE----FRDWWQDVQNHGRPKEADADSPFRRKFRKAHATKLFLPVGFPNPA 1039
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V +AYL P++++N + WG PDLDGLRRF GWSQ R D+ L+P+++ +++R
Sbjct: 1040 VFDAYLHPEVDSNTEPFQWGVPDLDGLRRFLMETIGWSQERTDEVLVPVIRDMNKR 1095
>gi|344244135|gb|EGW00239.1| DNA repair protein complementing XP-G cells-like [Cricetulus
griseus]
Length = 1028
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 616 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 675
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 676 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 730
Query: 440 QNYIVESMRRFKNW-----LAKK---NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W +KK N DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 731 RG--LDPLLKFSEWWHEAQTSKKVAANPHDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 788
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K+++
Sbjct: 789 DDSRGSFLWGKPDVDKIREFCQRYFGWNKTKTDESLFPVLKQLN 832
>gi|354501934|ref|XP_003513043.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Cricetulus griseus]
Length = 1176
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 764 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 823
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 824 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 878
Query: 440 QNYIVESMRRFKNW-----LAKK---NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W +KK N DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 879 RG--LDPLLKFSEWWHEAQTSKKVAANPHDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 936
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K+++
Sbjct: 937 DDSRGSFLWGKPDVDKIREFCQRYFGWNKTKTDESLFPVLKQLN 980
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE KVLAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRRVSPEALEGKVLAVDISIWLNQALKGVRDRH 46
>gi|198423155|ref|XP_002121987.1| PREDICTED: similar to Excision repair cross-complementing rodent
repair deficiency, complementation group 5 [Ciona
intestinalis]
Length = 948
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 146/224 (65%), Gaps = 13/224 (5%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+E QELL+LFG+PF+++P EAEAQCA L++ + T G IT+DSD+WLFG + VYK+ FD+K
Sbjct: 625 MECQELLRLFGIPFVLSPQEAEAQCAFLDMNDLTMGTITEDSDVWLFGGKNVYKDMFDRK 684
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
Y+ DI+ L R I +AL GSDYT GL+GVGPV ALEI+ +F P +
Sbjct: 685 RDPTCYSLLDIQAELGLLRSHFINIALCSGSDYTEGLEGVGPVRALEIMKEF-----PGE 739
Query: 441 NYIVESMRRFKNWLAKKN---KPDTH---LTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ES+ +FK W + KP T + +LR + + +FP+ V+EAYLKP +N +
Sbjct: 740 G--MESLVKFKQWWDDAHAQVKPPTSEAKIKTELRRLNVPQNFPSKLVVEAYLKPRVNES 797
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
K WG PDL G+R + + W++N++D+ L+P++KK ++R+
Sbjct: 798 KDKFVWGMPDLSGIRDYLTERLHWTRNKIDEELLPVLKKSAERA 841
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE +G+ V + TLE K+LAV I
Sbjct: 1 MGVTGLWKLLEGNGRQVELHTLEGKILAVDI 31
>gi|427797693|gb|JAA64298.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 856
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 139/220 (63%), Gaps = 10/220 (4%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E QELL L G P++V+PGEAEAQCA LE +QGV+TDDSD WLFGA+ +Y++ F
Sbjct: 589 ECQELLALLGQPYVVSPGEAEAQCAWLEQHGLSQGVVTDDSDAWLFGAQCIYRHLFRPDR 648
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+R+ D+ F L R+K++ ALL GSDYT G+ GVGPVTA+E+L++F D+
Sbjct: 649 RPMRFLMKDLASQFGLDRQKMVAFALLCGSDYTTGVNGVGPVTAMEVLSEFKGDDA---- 704
Query: 442 YIVESMRRFKNWLAK----KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
V + F+ WL K K +P + L + L FP+ V +AYL+P ++ + +
Sbjct: 705 --VSLLEEFRTWLEKAKEEKVQPGSKTRSHLVRLSLEPGFPSSRVAQAYLEPTVDESRET 762
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+WGTPDLD LR +A K GWS+ ++D L+P++K++ +
Sbjct: 763 FSWGTPDLDALRTYANQKLGWSREKLDDLLLPVLKRMGAK 802
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI-LYFTQG 146
MGV+GLW+++EA+GKP+ +ETLENKVLAV + L+ Q
Sbjct: 4 MGVHGLWQVVEAAGKPIALETLENKVLAVDVSLWLHQA 41
>gi|395527335|ref|XP_003765805.1| PREDICTED: uncharacterized protein LOC100931484 [Sarcophilus
harrisii]
Length = 1088
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 143/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF K
Sbjct: 672 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSK 731
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 732 DKFVEYYQYIDFHNQLGLDRSKLINLAYLLGSDYTEGIPSVGCVTAMEILNEF-----PG 786
Query: 440 QNYIVESMRRFKNWL-----AKKNKPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W KK +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 787 RG--LEPLLKFSEWWNEAQKTKKIRPNPHDTKVKKKLRQLQLFPGFPNPAVAEAYLKPVV 844
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDL+ +R F FGW++ + D++L+P++K+++
Sbjct: 845 DDSKGAFLWGKPDLEKIREFCQRYFGWNKTKTDESLLPVLKQLN 888
>gi|367044124|ref|XP_003652442.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
gi|346999704|gb|AEO66106.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
Length = 1226
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 167/296 (56%), Gaps = 35/296 (11%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL E + R AS + + RE QE E E + + D++
Sbjct: 819 QLAEEAEEHARFASQLNNKSQRENQEAY------------EQELRALRAQQKKDRRDADE 866
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V++ M+ E Q LL+LFG+P+I AP EAEAQCA L N G++TDDSDI+LFG VYK
Sbjct: 867 VTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLNLVDGIVTDDSDIFLFGGTRVYK 926
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F+ +V Y A D+ L+RE+LI LA L+GSDYT GL GVGPVTALEIL++F
Sbjct: 927 NVFNSNKYVECYLATDLETELSLSREQLISLAQLLGSDYTEGLPGVGPVTALEILSEF-- 984
Query: 435 SDSPNQNYIVESMRRFKNW---LAKKNKPD-----THLTRKLRNVK-----LNDDFPNVS 481
P ++ + E F++W + + +P + RK R L FP+ +
Sbjct: 985 ---PGRDGLTE----FRDWWQDVQNRGRPKDADAASPFRRKFRKAHATKLFLPPGFPSPA 1037
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V EAYL P+++++ + WG PDLDGLRRF + GW Q R D+ L+P+++ +++R
Sbjct: 1038 VAEAYLHPEVDSSPEPFQWGVPDLDGLRRFLVDTIGWDQERTDEVLVPVIRDMNRR 1093
>gi|1209080|gb|AAA91039.1| XPG [Mus musculus]
gi|1209097|gb|AAB17885.1| XPG [Mus musculus]
Length = 1170
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 142/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 768 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVYKNFFNK 827
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 882
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 883 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 940
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K ++
Sbjct: 941 DDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLKHLN 984
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
>gi|291393208|ref|XP_002713065.1| PREDICTED: XPG-complementing protein isoform 2 [Oryctolagus
cuniculus]
Length = 1203
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 145/233 (62%), Gaps = 24/233 (10%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P++ AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 780 FLESQELLRLFGIPYVEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 839
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 840 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 893
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN+ DT + +KLR ++L FPN +V EAYLKP +
Sbjct: 894 -GHGLEPLVKFSEWWQEAQKNQKIRPNPHDTKVKKKLRKLQLAPGFPNPAVAEAYLKPVV 952
Query: 492 NTNVQKLAWGTPDLDGLR---------RFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD D +R RF FGW++++ D++L+P++K+++
Sbjct: 953 DDSKGAFLWGKPDPDKIREYPFILTACRFCQRYFGWNRSKTDESLLPVLKQLN 1005
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALKGVRDRH 46
>gi|1389577|dbj|BAA03813.1| ERCC5 [Mus musculus]
Length = 1170
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 142/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 768 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVYKNFFNK 827
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 882
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 883 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 940
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K ++
Sbjct: 941 DDSRGSFLWGKPDVDKIREFXQRYFGWNRMKTDESLYPVLKHLN 984
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
>gi|74141263|dbj|BAE35937.1| unnamed protein product [Mus musculus]
Length = 898
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 142/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 665 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 724
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 725 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 779
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 780 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 837
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K ++
Sbjct: 838 DDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLKHLN 881
>gi|187954383|gb|AAI41071.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1170
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 142/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 768 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 827
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 882
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 883 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 940
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K ++
Sbjct: 941 DDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLKHLN 984
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
>gi|291393206|ref|XP_002713064.1| PREDICTED: XPG-complementing protein isoform 1 [Oryctolagus
cuniculus]
Length = 1188
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 145/233 (62%), Gaps = 24/233 (10%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P++ AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 765 FLESQELLRLFGIPYVEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 824
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 825 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 878
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN+ DT + +KLR ++L FPN +V EAYLKP +
Sbjct: 879 -GHGLEPLVKFSEWWQEAQKNQKIRPNPHDTKVKKKLRKLQLAPGFPNPAVAEAYLKPVV 937
Query: 492 NTNVQKLAWGTPDLDGLR---------RFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD D +R RF FGW++++ D++L+P++K+++
Sbjct: 938 DDSKGAFLWGKPDPDKIREYPFILTACRFCQRYFGWNRSKTDESLLPVLKQLN 990
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALKGVRDRH 46
>gi|74215723|dbj|BAE23409.1| unnamed protein product [Mus musculus]
Length = 1166
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 142/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 768 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 827
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 882
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 883 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 940
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K ++
Sbjct: 941 DDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLKHLN 984
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
>gi|170172544|ref|NP_035859.2| DNA repair protein complementing XP-G cells homolog [Mus musculus]
Length = 1170
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 142/224 (63%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 768 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 827
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 882
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 883 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 940
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K ++
Sbjct: 941 DDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLKHLN 984
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
>gi|449272261|gb|EMC82261.1| DNA repair protein complementing XP-G cell [Columba livia]
Length = 1133
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 146/231 (63%), Gaps = 22/231 (9%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSD+WLFGAR VYKNFF +
Sbjct: 723 FLESQELLRLFGIPYIEAPMEAEAQCAVLDLTDQTSGTITDDSDVWLFGARHVYKNFFSQ 782
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+V Y D + L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 783 NKYVEYYQYVDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNEF-----PG 837
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L FPN +V EAYLKP +
Sbjct: 838 RG--LEPLLKFAEWWNEAQKNKKLRPNPHDTKVKKKLRELQLASGFPNPAVAEAYLKPVV 895
Query: 492 NTNVQKLAWGTPDLDGLRR-------FAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD++ +R F + FGW++ +VD+ L P++K+++
Sbjct: 896 DESRGSFTWGKPDVEQIREYSLTFCTFCQDHFGWTRTKVDEILSPVIKQLN 946
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE +G+P+ ETLE K+LAV I
Sbjct: 1 MGVQGLWKLLECAGRPINPETLEGKILAVDI 31
>gi|395833265|ref|XP_003789660.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing XP-G
cells [Otolemur garnettii]
Length = 1650
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 139/219 (63%), Gaps = 15/219 (6%)
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 384
ELL+LFG+P++ AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K V
Sbjct: 1239 ELLRLFGIPYVQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVE 1298
Query: 385 RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIV 444
Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F + +
Sbjct: 1299 YYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP-------GHGL 1351
Query: 445 ESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
E + +F W A+KN +P+ H T +KLR ++L FPN +V +AYLKP ++ +
Sbjct: 1352 EPLLKFSEWWNEAQKNMKIRPNPHDTKVKKKLRKLQLTPGFPNPAVADAYLKPVVDDSKG 1411
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
WG PDLD +R F FGW++ + D+ L P++K++S
Sbjct: 1412 SFLWGKPDLDRIREFCQRYFGWNRTKTDECLFPVLKQLS 1450
>gi|351703064|gb|EHB05983.1| DNA repair protein complementing XP-G cells [Heterocephalus glaber]
Length = 1026
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 144/231 (62%), Gaps = 22/231 (9%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 604 FLESQELLRLFGVPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 663
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 664 DKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 718
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+KN+ DT + ++LR ++L FPN +V EAYL+P +
Sbjct: 719 RG--LDPLLKFSEWWQEAQKNRKVRPNPNDTKVKKQLRKLQLTPGFPNPAVAEAYLRPVV 776
Query: 492 NTNVQKLAWGTPDLDGLRR-------FAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PDLD +R F FGWS+ + D++L P++K++S
Sbjct: 777 DDSKGAFLWGKPDLDKIREYPWCLQTFCQRYFGWSRTKTDESLSPVLKQLS 827
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLEGSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|74211217|dbj|BAE37682.1| unnamed protein product [Mus musculus]
Length = 1043
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 15/222 (6%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 770 ESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNK 829
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P +
Sbjct: 830 FVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PGRG 884
Query: 442 YIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P ++
Sbjct: 885 --LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVVDD 942
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ WG PD+D +R F FGW++ + D++L P++K ++
Sbjct: 943 SRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLKHLN 984
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
>gi|408360334|sp|P35689.4|ERCC5_MOUSE RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=DNA excision repair protein ERCC-5;
AltName: Full=Xeroderma pigmentosum group
G-complementing protein homolog
Length = 1170
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 141/224 (62%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 768 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 827
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 882
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 883 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 940
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D + F FGW++ + D++L P++K ++
Sbjct: 941 DDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYPVLKHLN 984
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
>gi|355701088|gb|EHH29109.1| hypothetical protein EGK_09444 [Macaca mulatta]
Length = 1194
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 143/232 (61%), Gaps = 24/232 (10%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 772 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 831
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 832 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 885
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 886 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 944
Query: 492 NTNVQKLAWGTPDLDGLRRF---------AANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDL+ +R + FGW++ + D++L P++K++
Sbjct: 945 DDSKGSFLWGKPDLEKIREYPLLLKREGNTLRYFGWNRTKTDESLFPVLKQL 996
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG+ V E LE K+LAV I
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDI 31
>gi|303607|dbj|BAA03812.1| ERCC5 [Homo sapiens]
Length = 1185
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 139/223 (62%), Gaps = 16/223 (7%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAVLDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G G TA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-GNTNCGLCTAMEILNEFP------ 881
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 882 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 940
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD + F FGW++ + D++L P++K++
Sbjct: 941 DDSKGSFLWGKPDLDKISEFCQRYFGWNRTKTDESLFPVLKQL 983
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>gi|355754793|gb|EHH58694.1| hypothetical protein EGM_08605, partial [Macaca fascicularis]
Length = 1000
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 143/232 (61%), Gaps = 24/232 (10%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 772 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 831
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 832 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 885
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 886 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 944
Query: 492 NTNVQKLAWGTPDLDGLRRF---------AANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDL+ +R + FGW++ + D++L P++K++
Sbjct: 945 DDSKGSFLWGKPDLEKIREYPLLLKREGNTLRYFGWNRTKTDESLFPVLKQL 996
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG+ V E LE K+LAV I
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDI 31
>gi|148664472|gb|EDK96888.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1171
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 142/225 (63%), Gaps = 16/225 (7%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 768 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 827
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 882
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 883 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 940
Query: 492 NTNVQKLAWGTPDLDGLR-RFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D +R F FGW++ + D++L P++K ++
Sbjct: 941 DDSRGSFLWGKPDVDKIRDTFCQRYFGWNRMKTDESLYPVLKHLN 985
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
>gi|85116383|ref|XP_965045.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
gi|28926846|gb|EAA35809.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
Length = 1269
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 146/243 (60%), Gaps = 19/243 (7%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+ FG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 869 DRRDADEVTQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLF 928
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y + DI L+R++LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 929 GGTRVYKNMFNGNKFVECYLSSDIERDLSLSRDQLIALAQLLGSDYTEGLSGVGPVTAVE 988
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK---KNKPD-----THLTRKLRNVK-----LN 474
IL++F P +P + S+ FK W K +PD T RK R + L
Sbjct: 989 ILSEFPPEPTP-----ISSLTTFKEWWTKIQSSPQPDPSLLSTPFRRKFRKAQATKLFLP 1043
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FPN +V +AYL P++++ + WG PDL+GLR+F GWSQ R D+ L+P+++ +
Sbjct: 1044 VGFPNPAVFDAYLHPEVDSTPEPFQWGVPDLEGLRQFLMQTIGWSQERTDEVLVPVIRDM 1103
Query: 535 SQR 537
++R
Sbjct: 1104 NKR 1106
>gi|336463192|gb|EGO51432.1| hypothetical protein NEUTE1DRAFT_70166 [Neurospora tetrasperma FGSC
2508]
gi|350297610|gb|EGZ78587.1| PIN domain-like protein [Neurospora tetrasperma FGSC 2509]
Length = 1269
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 139/231 (60%), Gaps = 18/231 (7%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E Q LL+ FG+P+I AP EAEAQCA L G++TDDSD +LFG VYKN F+
Sbjct: 884 ITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMFNG 943
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y + DI L+R++LI LA L+GSDYT GL GVGPVTA+EIL++F P +P
Sbjct: 944 NKFVECYLSSDIERDLSLSRDQLIALAQLLGSDYTEGLSGVGPVTAVEILSEFPPEPTP- 1002
Query: 440 QNYIVESMRRFKNWLAK---KNKPD-----THLTRKLRNVK-----LNDDFPNVSVIEAY 486
+ S+ FK W K +PD T RK R + L FPN +V +AY
Sbjct: 1003 ----ISSLTTFKEWWTKIQSSPQPDPALLSTPFRRKFRKAQATKLFLPVGFPNPAVFDAY 1058
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L P++++ + WG PDL+GLR++ GWSQ R D+ L+P+++ +++R
Sbjct: 1059 LHPEVDSTPEPFQWGVPDLEGLRQYLMQTIGWSQERTDEVLVPVIRDLNKR 1109
>gi|390340292|ref|XP_791943.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Strongylocentrotus purpuratus]
Length = 1373
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 166/275 (60%), Gaps = 19/275 (6%)
Query: 274 QMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKM-------LEAQEL 326
Q S + E+ + GV ++ E E + + L +K+RR + +++E+
Sbjct: 804 QESDQEPEIDEWHGV-YVDKMNEMEKKLHTERLALEKERRKQQKKSYSITDTMYADSKEM 862
Query: 327 LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 386
LQ FG+P+I +P EAEAQCA L+L N +G ITDD DIWLFG R V+++FF KK +
Sbjct: 863 LQCFGIPYIESPQEAEAQCAFLDLTNQAEGTITDDGDIWLFGGRRVFRHFFSKKKDPEYF 922
Query: 387 TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
DI + L R+KLI LA LVGSDYT G+QG+G V A+EILA+F + + +++
Sbjct: 923 RVGDIERHLLLDRKKLINLAYLVGSDYTLGIQGIGSVGAMEILAEF-------KGHGLKT 975
Query: 447 MRRFKNWLAK---KNKPDTHLTR-KLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGT 502
++ FK+W ++ + P + TR K + L D+FPN + +AY P I+ + + WG
Sbjct: 976 LKDFKSWWSRTQDQGVPSLNATRSKWCKLVLPDEFPNPLIAKAYTNPAIDESEEGFQWGL 1035
Query: 503 PDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
PDL LR FA +FGW + ++D+ L+P++++++++
Sbjct: 1036 PDLGLLREFARERFGWMKTKLDEQLLPVLQRLNEK 1070
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 27/31 (87%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLW+L+E++G+PV +E+LE KV+AV +
Sbjct: 1 MGVQGLWRLVESTGRPVNLESLEGKVIAVDV 31
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKN----EMALPPPSVSR--EVDMF 86
A R+ K+ AA+ +K ++KN ++ + V+G+N LPP + R E D++
Sbjct: 86 AARRQRKNLAAARTEKTTERIVKNYMKSHAIQAVIGENGEGTSQDLPPLYIPRKNETDLY 145
Query: 87 ELPPAPAQTVQD 98
ELPP P+ + +
Sbjct: 146 ELPPLPSNDLHE 157
>gi|242000896|ref|XP_002435091.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
gi|215498421|gb|EEC07915.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
Length = 868
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 146/227 (64%), Gaps = 17/227 (7%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF-- 377
++E QELL++FG+PF+V+PGEAEAQCA LE TQG +TDDSD WLFGARTVY++ F
Sbjct: 645 VMECQELLRMFGLPFVVSPGEAEAQCAWLEEQGLTQGTVTDDSDAWLFGARTVYRHLFAS 704
Query: 378 DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS 437
D++ V R D+ L R+KL+ ALL GSDYT G+ GVGP+TA+E+L++FS D+
Sbjct: 705 DRRPSVYRLQ--DLATQLGLNRQKLVAFALLCGSDYTAGVSGVGPITAMEVLSEFSGEDA 762
Query: 438 PNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRN----VKLNDDFPNVSVIEAYLKPDINT 493
++ + F+ WL + + H + R+ + + FP+ V+ AYL+P ++
Sbjct: 763 ------LQLLENFRTWLERAKREKVHPGSRTRSHLVRLTVEPGFPSAPVVRAYLEPSVDA 816
Query: 494 NVQKLAWGTPDLDGLRRFAANK---FGWSQNRVDQTLIPIMKKISQR 537
+ + +WGTP+LD LR + + GW + ++D L+P+++++ ++
Sbjct: 817 SKETFSWGTPNLDELRSYPLPRLSALGWQREKLDDLLLPVLRRMGEK 863
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLW++LE +GKPV +ETLE+KVLAV I
Sbjct: 1 MGVQGLWQILEPAGKPVALETLESKVLAVDI 31
>gi|320586182|gb|EFW98861.1| DNA excision repair protein rad2 [Grosmannia clavigera kw1407]
Length = 1287
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 161/296 (54%), Gaps = 35/296 (11%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
Q+ E + R AST+ + RE+Q + E E + + D++
Sbjct: 854 QMAEEAEEHARFASTLNHKTGRESQAVF------------EQEVKALRNQQKKDRRDADE 901
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V+ M+ E Q LL+LFG+P+I AP EAEAQC+ L G++TDDSD +LFG VYK
Sbjct: 902 VTMVMVSECQALLRLFGIPYITAPMEAEAQCSELVSLGLVDGIVTDDSDTFLFGGTRVYK 961
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F+ V + A D+ L+REKLI LA L+GSDYT GL GVGPVTA+EIL++F
Sbjct: 962 NMFNGNKFVECFLAADLEKEMSLSREKLISLAQLLGSDYTDGLPGVGPVTAMEILSEFPG 1021
Query: 435 SDSPNQNYIVESMRRFKNWL--------AKKNKPDTHLTRKLRNVK-----LNDDFPNVS 481
+ + F+ W +++ + RK R + L FPN +
Sbjct: 1022 P---------QGLEEFRTWWDDVQMHGRSREADAGSPFRRKFRKSQGTKLFLPTGFPNAA 1072
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V AY KP+++++ + WG PDLDGLR F + GWSQ+R D+ L+P+++ +++R
Sbjct: 1073 VAAAYKKPEVDSSTEPFQWGVPDLDGLRSFLMSTIGWSQDRTDEVLVPVIRDMNRR 1128
>gi|380474820|emb|CCF45572.1| DNA-repair protein rad13 [Colletotrichum higginsianum]
Length = 622
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 163/295 (55%), Gaps = 35/295 (11%)
Query: 257 LLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYV 316
L E + R AS + + RE +E E E + + D++ V
Sbjct: 233 LAQEAEEHARFASELNNKSERENKEAY------------ERELKALRTQQKKDRRDADEV 280
Query: 317 SRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++ M+ E Q LL+LFG+P+I AP EAEAQCA L + G++TDDSD +LFG +YKN
Sbjct: 281 TQVMVTECQALLRLFGIPYITAPMEAEAQCAELVRMSLVDGIVTDDSDCFLFGGTRIYKN 340
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F+ V Y D+ L+RE+LI +A L+GSDYT GL GVGPVTA+EIL++F+
Sbjct: 341 MFNSNKFVECYLGSDLEKELSLSREQLIAIAQLLGSDYTEGLPGVGPVTAVEILSEFTGK 400
Query: 436 DSPNQNYIVESMRRFKNW---LAKKNKPD-----THLTRKLRNVK-----LNDDFPNVSV 482
D + RFK W + N+P + RK R + L FPN +V
Sbjct: 401 D---------GLERFKEWWQDVQMNNRPKEADAGSPFRRKFRKSQATKLFLPTGFPNPAV 451
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+AYL+P+++++ + WG PDL+GLR+F GWS+ R D+ L+P+++ +++R
Sbjct: 452 TDAYLRPEVDSSPEHFQWGVPDLEGLRQFLMATIGWSKERTDEVLVPVIRDMNKR 506
>gi|336265442|ref|XP_003347492.1| Rad2 protein [Sordaria macrospora k-hell]
gi|380087974|emb|CCC05192.1| putative Rad2 protein [Sordaria macrospora k-hell]
Length = 1279
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 162/295 (54%), Gaps = 26/295 (8%)
Query: 257 LLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYV 316
L E + R A+ + S+ QE + EAE + + D++ V
Sbjct: 834 LAAEAEEHARFATELNPASSKSLQENQAAY---------EAELKALRSQQRKDRRDADEV 884
Query: 317 SRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++ M+ E Q LL+ FG+P+I AP EAEAQCA L G++TDDSD +LFG VYKN
Sbjct: 885 TQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKN 944
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F+ V Y DI L RE+LI LA L+GSDYT GL GVGPVTA+EIL++F PS
Sbjct: 945 MFNGNKFVECYLLNDIEKELSLGREQLIALAQLLGSDYTEGLPGVGPVTAVEILSEFPPS 1004
Query: 436 DSPNQNYIVESMRRFKNW---LAKKNKPD-----THLTRKLRNVKLND-----DFPNVSV 482
+++ + S++ FK W L PD T RK R L +FP+ +V
Sbjct: 1005 ---SESGPMSSLKDFKQWWTTLQSTPHPDASLLNTPFRRKFRKSHLTKLFLPLNFPSPAV 1061
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
EAYL+P++++ WG PDL+GLR++ GWS R D+ L+P+++ +++R
Sbjct: 1062 FEAYLRPEVDSTPDPFQWGVPDLEGLRQYLMQTIGWSPERTDEVLVPVIRDMNRR 1116
>gi|406604494|emb|CCH44056.1| DNA repair protein [Wickerhamomyces ciferrii]
Length = 1010
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 142/228 (62%), Gaps = 24/228 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LFG VYKN F +K
Sbjct: 746 EVQELLARFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGGKVYKNMFHEKH 805
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y++ DI LTR+KLI++A L+GSDYT GL+G+GPV A+EIL+ F
Sbjct: 806 YVEFYSSQDIERELGLTRQKLIEIAQLLGSDYTEGLKGIGPVNAMEILSHFG-------- 857
Query: 442 YIVESMRRFKNWLAK------KNKPDTHLTRKLR------NVKLNDDFPNVSVIEAYLKP 489
+ F+NW + K + + + LR N+ L++ FP+ + +AYL+
Sbjct: 858 ----DLTNFRNWFVETQFDIGKQQNEESFLKNLRKKLIKNNILLDNTFPDKRIDQAYLQA 913
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+++ + + WGTPDLD +R F + GWSQ++VDQ L+P++K ++++
Sbjct: 914 EVDKDKTEFVWGTPDLDRIRTFLMSSVGWSQDKVDQVLVPLIKDLNKK 961
>gi|296087697|emb|CBI34953.3| unnamed protein product [Vitis vinifera]
Length = 1449
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 147/248 (59%), Gaps = 26/248 (10%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +EL N GV+TDDSD++LFGAR+VYK
Sbjct: 794 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYK 853
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD++ +V Y DI L REK+I++ALL+GSDYT G+ G+G V A+E+L F
Sbjct: 854 NIFDERKYVETYFMKDIETELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPE 913
Query: 435 SD----------SPNQNYI----VESMRRFKNWLAKKNKPDTHLTR-------KLRNVKL 473
D SP+ N + VE+ + +K N+ + K RNV
Sbjct: 914 EDGLHKFREWVESPDPNILGKVNVETGSSSRKRGSKHNESVDDIQSGKQIFMDKHRNVSK 973
Query: 474 N----DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIP 529
N FP+ +VI AY P ++ + + +WG PDL LR+ KFGW + D+ L+P
Sbjct: 974 NWHIPSSFPSETVISAYASPQVDQSTEPFSWGKPDLFVLRKLCLEKFGWGNQKADELLLP 1033
Query: 530 IMKKISQR 537
++K+ ++
Sbjct: 1034 VLKEYNKH 1041
>gi|403177167|ref|XP_003335732.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172758|gb|EFP91313.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1403
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 140/230 (60%), Gaps = 16/230 (6%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
Q LL+LFG+PF+V+P EAEAQCA L G+ITDDSD++LFG VYKN F++ V
Sbjct: 961 QNLLKLFGIPFVVSPMEAEAQCAELLKLGLVDGIITDDSDVFLFGGHRVYKNLFNQNKFV 1020
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS-----P 438
Y D+ L ++KLIQLA L+GSDYT GL GVGPVTA+EIL++F P+ S
Sbjct: 1021 ECYLMNDLDQELGLDQQKLIQLAFLLGSDYTVGLNGVGPVTAMEILSEFDPAFSAGVATA 1080
Query: 439 NQNYIVESMRRFKNWLAK-KNKPDTHLTRKLR----------NVKLNDDFPNVSVIEAYL 487
+ N + + FKNW K + DT L + + ++D +PN +V EAYL
Sbjct: 1081 HHNPNLSGLLNFKNWWEKVQVGKDTELESRTSFRKKFRKKKDKIWIDDHWPNPAVAEAYL 1140
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P ++ + +K WG PDLDG+R F + WS + D+ ++P++K+ +QR
Sbjct: 1141 HPTVDHSTEKFVWGLPDLDGIREFLYDHLSWSSIKTDEVIVPLIKRQTQR 1190
>gi|425769594|gb|EKV08085.1| DNA excision repair protein Rad2 [Penicillium digitatum Pd1]
gi|425771041|gb|EKV09495.1| DNA excision repair protein Rad2 [Penicillium digitatum PHI26]
Length = 1130
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 132/227 (58%), Gaps = 23/227 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E Q+LL LFG+P+I AP EAEAQCA L G++TDDSDI+LFG VYKN F++
Sbjct: 815 ECQQLLALFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFGGTRVYKNMFNQSK 874
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y D+ + L R+KLI A L+GSDYT G+ G+GPVTALEIL +FS
Sbjct: 875 FVECYLTSDLEKEYALHRQKLISFAHLLGSDYTEGIPGIGPVTALEILTEFS-------- 926
Query: 442 YIVESMRRFKNW-----LAKKNKPDTHLT------RKLRNVKLNDDFPNVSVIEAYLKPD 490
++ F+NW + N D HL +K + L FP+ V EAYL+P
Sbjct: 927 ----NLEEFRNWWTELQMGTNNAEDVHLAFRKKFRKKASKIFLPPSFPDSKVDEAYLEPA 982
Query: 491 INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
++ + WG PDL+GLR F GWSQ R D+ L+P+++ +++R
Sbjct: 983 VDDDPSPFQWGVPDLNGLRTFLMTTIGWSQERTDEVLVPVIRDMNRR 1029
>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
Length = 1280
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 164/296 (55%), Gaps = 35/296 (11%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
Q+ E + R AS + + RE QE E E + + D++
Sbjct: 853 QMAEEAEEHARFASQLNNKTQRENQEAY------------EQELRALRTQQKKDRRDADE 900
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V++ M+ E Q LL+LFGVP+I AP EAEAQCA L N G++TDDSD +LFG VYK
Sbjct: 901 VTQVMVTECQALLRLFGVPYITAPMEAEAQCAELVRLNLVDGIVTDDSDTFLFGGTRVYK 960
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F+ V Y D+ EL+RE+LI LA L+GSDYT G+ G+GPVTA+EIL++F
Sbjct: 961 NMFNSNKFVECYLLRDLEDELELSREQLIALAQLLGSDYTEGIPGIGPVTAVEILSEF-- 1018
Query: 435 SDSPNQNYIVESMRRFKNWL--------AKKNKPDTHLTRKLRNVK-----LNDDFPNVS 481
P + E + FK W K+ + RK R + L FP+ +
Sbjct: 1019 ---PGR----EGLSDFKTWWEDVQSGKRPKEADASSPFRRKFRKGQATKLFLPLGFPSPA 1071
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V +AYL P+++++ ++ WG PDL+GLR+F + GWS+ R D+ L+P+++ +++R
Sbjct: 1072 VFDAYLHPEVDSSQEQFQWGVPDLEGLRQFLMSTIGWSKERTDEVLVPVIRDVNRR 1127
>gi|347833577|emb|CCD49274.1| similar to DNA excision repair protein [Botryotinia fuckeliana]
Length = 1341
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 161/297 (54%), Gaps = 36/297 (12%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL +E + R AST+ + +E + E + + + D++
Sbjct: 881 QLAIEAEEHARFASTLNNKSEKENHDSY------------EQDLKALRNQQKKDRRDADE 928
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSDI+LFG VYK
Sbjct: 929 VSHIMITECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFGGTRVYK 988
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F+ V Y + D+ L+RE+LI +A L+GSDYT G+ G+GPVTA+EIL++F P
Sbjct: 989 NLFNSNKLVECYLSSDLEKELSLSREQLISIAHLLGSDYTEGIPGIGPVTAVEILSEF-P 1047
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLT---------RKLRNVK-----LNDDFPNV 480
S + + FK W + P T L +K R + L FP+
Sbjct: 1048 SHA--------GLEEFKEWWSLVQNPLTTLPLASEPTLFRKKFRRSQATKLFLPPAFPSQ 1099
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+V EAYLKPD+++ + WG PDL LR F GWSQ RVD+ L+P+++ +++R
Sbjct: 1100 AVTEAYLKPDVDSTAEAFQWGVPDLGQLREFLMATVGWSQERVDEILVPVIRDMNRR 1156
>gi|151943533|gb|EDN61844.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
Length = 1031
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|349578461|dbj|GAA23627.1| K7_Rad2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1031
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|365765505|gb|EHN07013.1| Rad2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1031
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|323354903|gb|EGA86736.1| Rad2p [Saccharomyces cerevisiae VL3]
Length = 998
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|256272689|gb|EEU07666.1| Rad2p [Saccharomyces cerevisiae JAY291]
Length = 1031
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|70991587|ref|XP_750642.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
gi|66848275|gb|EAL88604.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
Length = 1130
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 143/240 (59%), Gaps = 23/240 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q+LL LFG+P+I+AP EAEAQCA L G+ITDDSDI+LF
Sbjct: 788 DRRDADEVTQVMITECQQLLSLFGLPYIIAPMEAEAQCAELVSLGLVDGIITDDSDIFLF 847
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ + L R KLI LA L+GSDYT G+ G+GPVTALE
Sbjct: 848 GGTRVYKNMFNQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALE 907
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKNK----PDTH--LTRKLR----NVKLNDDF 477
IL +FS S+ F++W + P+TH +K R + + F
Sbjct: 908 ILTEFS------------SLEEFRDWWTQIQTGMYVPETHAAFYKKFRKTATKIFIPPTF 955
Query: 478 PNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
PN V +AYL+P+++++ WG PDL GLR F GWSQ R D+ L+P+++ +++R
Sbjct: 956 PNPQVDKAYLEPEVDSDPSPFQWGVPDLHGLRNFLMTTIGWSQERTDEVLLPVIRDMNRR 1015
>gi|254573770|ref|XP_002493994.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA during
nucleotide excision repair [Komagataella pastoris GS115]
gi|238033793|emb|CAY71815.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA during
nucleotide excision repair [Komagataella pastoris GS115]
gi|328354189|emb|CCA40586.1| DNA repair protein complementing XP-G cells [Komagataella pastoris
CBS 7435]
Length = 1043
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 153/245 (62%), Gaps = 16/245 (6%)
Query: 309 DKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M++ Q++L FG+P+I AP EAEAQCA L G+ITDDSD +LF
Sbjct: 756 DQRDSDEVTQGMIDDIQDMLTRFGIPYITAPMEAEAQCAELLKLKLVDGIITDDSDCFLF 815
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F++K +V Y +I+ LTR K+I++ALLVGSDYT G++G+G VTA+E
Sbjct: 816 GGERIYKNMFNEKQYVECYFLEEIQRDLGLTRNKMIEIALLVGSDYTEGIKGIGIVTAME 875
Query: 428 ILAKFSP----SDSPNQNYIVESMRRFKNWL--------AKKNKPD--THLTRKLRN-VK 472
IL++F P + +P S+ F+NW A N+ + T L RK + +
Sbjct: 876 ILSEFDPQKEGNSTPKNMLGSGSLINFRNWWMDYQNGVPAPSNESEIRTKLKRKFKGKLF 935
Query: 473 LNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L+ FP+ V E YL+P+++++ K WGTPDLD LRRF GW Q +VD+ L+P+++
Sbjct: 936 LDFGFPDPQVFEGYLRPEVDSDDTKFQWGTPDLDQLRRFLMATVGWDQKKVDEVLVPVIR 995
Query: 533 KISQR 537
++++
Sbjct: 996 DMNKK 1000
>gi|207344901|gb|EDZ71889.1| YGR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1031
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|448530440|ref|XP_003870064.1| Rad2 protein [Candida orthopsilosis Co 90-125]
gi|380354418|emb|CCG23933.1| Rad2 protein [Candida orthopsilosis]
Length = 995
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 151/255 (59%), Gaps = 26/255 (10%)
Query: 297 AEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
E Q +L K+ V+ M+ + QELL+ FG+P+I AP EAEAQCA L
Sbjct: 710 TEEQLLQEKLQKAKRDSDEVTENMISDVQELLKRFGIPYITAPMEAEAQCAELFRIGLVD 769
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G+ITDDSD +LFG +YKN F++K V Y DI L+RE LI+LA+L+GSDYT
Sbjct: 770 GIITDDSDCFLFGGDRIYKNMFNQKQFVECYFKDDIEDRIGLSRENLIELAILLGSDYTQ 829
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKP-----------DTHL 464
G++G+GPV A+EILA+F S++RFK+W +K K +L
Sbjct: 830 GIKGIGPVLAVEILAEFG------------SLKRFKSWFDEKTKTTKLDQVTLTPLQRNL 877
Query: 465 TRKLRNVKLN--DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
T +++N KL D+FP+ + EAY P+++++ + WG P+LD +R F WSQ R
Sbjct: 878 TNRIKNGKLYLPDNFPDKVIFEAYQHPEVDSDKSEFKWGIPNLDQIRSFLMYNVNWSQER 937
Query: 523 VDQTLIPIMKKISQR 537
VD+ ++P+++ ++++
Sbjct: 938 VDEVMVPLVRDLNKK 952
>gi|6321697|ref|NP_011774.1| Rad2p [Saccharomyces cerevisiae S288c]
gi|131811|sp|P07276.2|RAD2_YEAST RecName: Full=DNA repair protein RAD2
gi|172329|gb|AAA66928.1| RAD2 [Saccharomyces cerevisiae]
gi|1323470|emb|CAA97287.1| RAD2 [Saccharomyces cerevisiae]
gi|285812449|tpg|DAA08349.1| TPA: Rad2p [Saccharomyces cerevisiae S288c]
gi|392299514|gb|EIW10608.1| Rad2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1031
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|444731111|gb|ELW71474.1| DNA repair protein complementing XP-G cells [Tupaia chinensis]
Length = 1217
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 129/212 (60%), Gaps = 15/212 (7%)
Query: 332 VPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 391
+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K V Y D
Sbjct: 821 IPYIEAPMEAEAQCAVLDLTDQTAGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDF 880
Query: 392 RYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFK 451
L R KLI LA L+GSDYT G+ VG VTA+EIL +F + +E + +F
Sbjct: 881 HNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP-------GHGLEPLLKFS 933
Query: 452 NWLA--------KKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTP 503
W + N DT + RKLR ++L FPN +V +AYLKP ++ + WG P
Sbjct: 934 EWWQEAQKHQKLRPNPHDTKVKRKLRKLQLAPGFPNPAVADAYLKPVVDASKGSFLWGKP 993
Query: 504 DLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DLD +R + FGW++ + D++L P++K+++
Sbjct: 994 DLDKIREYPFRYFGWNRTKTDESLFPVLKQLN 1025
>gi|50287803|ref|XP_446331.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525638|emb|CAG59255.1| unnamed protein product [Candida glabrata]
Length = 992
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 146/242 (60%), Gaps = 25/242 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ + QELL FG+P+I AP EAEAQCA L G+ITDDSD++LF
Sbjct: 721 DKRDADEVTMDMIKDVQELLARFGIPYITAPMEAEAQCAELVNLKLVDGIITDDSDVFLF 780
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G + VYKN F +K++V Y + DI LTRE +I+LA L+GSDYT G++G+GPV+++E
Sbjct: 781 GGKKVYKNMFQEKNYVEYYDSEDIYQGLGLTRETMIELAQLLGSDYTTGIKGMGPVSSME 840
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWL------AKKNKPDTHLTRKLR------NVKLND 475
ILA+F ++ FK W KK + + R LR ++ L+D
Sbjct: 841 ILAEFG------------DLKNFKRWYNEGQFDKKKQEGEDKFRRDLRKKLVKNDIILDD 888
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V ++YL P+++ + W PDLD LR+F + GW Q + D+ LIP+++ I+
Sbjct: 889 DFPSVFVADSYLNPEVDHDKTPFTWANPDLDMLRQFLYSYLGWPQEKSDEVLIPLIRDIN 948
Query: 536 QR 537
R
Sbjct: 949 AR 950
>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
Length = 1066
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/347 (34%), Positives = 179/347 (51%), Gaps = 48/347 (13%)
Query: 210 ILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDR--DQLLLERGKQTRL 267
I D + + S V +++ + + ++ D S E D QL LE + R
Sbjct: 597 IPDQSINELPSSHSVSNIEPQPNAENAVVEFPDDFGDYSDPEDDELMHQLALEAEEHARF 656
Query: 268 ASTITEQMSRE-----AQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKML- 321
AST+ + E QEL QL + D++ VS M+
Sbjct: 657 ASTLNSKSQAENALDYEQELKQLRS-----------------QQKKDRRDADEVSHIMVT 699
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG +YKN F++
Sbjct: 700 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 759
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y + D+ + L R+KLI + L+GSDYT G+ G+GPVTALEIL +FS
Sbjct: 760 YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFS-------- 811
Query: 442 YIVESMRRFKNW-----LAKKNKPDTH------LTRKLRNVKLNDDFPNVSVIEAYLKPD 490
S+ F++W L K DTH + L + L FP+ +V +AYL+P+
Sbjct: 812 ----SLEEFRDWWSQVQLGNKIPDDTHAAFRKKFKKNLTKLFLPPGFPDKAVEKAYLEPE 867
Query: 491 INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
++++ + WG PDLD +R+F GWS R D+ L+P+++ +++R
Sbjct: 868 VDSDPSEFKWGVPDLDAVRQFLMATIGWSPERTDEVLVPVIRDVNRR 914
>gi|310790037|gb|EFQ25570.1| DNA excision repair protein [Glomerella graminicola M1.001]
Length = 1271
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 139/231 (60%), Gaps = 22/231 (9%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG +YKN F+
Sbjct: 936 VTECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDCFLFGGTRIYKNMFNS 995
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y + D+ L+RE+LI +A L+GSDYT GL GVGPVTA+EIL++F D
Sbjct: 996 NKFVECYLSSDLEKELSLSREQLIAIAQLLGSDYTEGLPGVGPVTAVEILSEFPGKD--- 1052
Query: 440 QNYIVESMRRFKNW---LAKKNKPD-----THLTRKLRNVK-----LNDDFPNVSVIEAY 486
+ RFK W + N+P + RK R + L FPN +V +AY
Sbjct: 1053 ------GLDRFKEWWQDVQMNNRPKEADAVSPFRRKFRKSQATKLFLPSGFPNPAVTDAY 1106
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
++P+++++ + WG PDL+GLR+F GWS+ R D+ L+P+++ +++R
Sbjct: 1107 IRPEVDSSPEHFQWGVPDLEGLRQFLMATIGWSKERTDEVLVPVIRDMNKR 1157
>gi|259146759|emb|CAY80016.1| Rad2p [Saccharomyces cerevisiae EC1118]
Length = 1031
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKDFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|159124202|gb|EDP49320.1| DNA excision repair protein Rad2 [Aspergillus fumigatus A1163]
Length = 1130
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 142/240 (59%), Gaps = 23/240 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q+LL LFG+P+I AP EAEAQCA L G+ITDDSDI+LF
Sbjct: 788 DRRDADEVTQVMITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLF 847
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ + L R KLI LA L+GSDYT G+ G+GPVTALE
Sbjct: 848 GGTRVYKNMFNQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALE 907
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKNK----PDTH--LTRKLR----NVKLNDDF 477
IL +FS S+ F++W + P+TH +K R + + F
Sbjct: 908 ILTEFS------------SLEEFRDWWTQIQTGMYVPETHAAFYKKFRKTATKIFIPPTF 955
Query: 478 PNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
PN V +AYL+P+++++ WG PDL GLR F GWSQ R D+ L+P+++ +++R
Sbjct: 956 PNPQVDKAYLEPEVDSDPSPFQWGVPDLHGLRNFLMTTIGWSQERTDEVLLPVIRDMNRR 1015
>gi|449446847|ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
Length = 1541
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 154/292 (52%), Gaps = 67/292 (22%)
Query: 304 LELGTDKKR----RPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVI 358
L LG ++KR V+ +M E QELLQ+FG+P+I+AP EAEAQCA +EL N GV+
Sbjct: 868 LNLGDEQKRLERNAESVNSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVV 927
Query: 359 TDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQ 418
TDDSD++LFGAR+VYKN FD + +V Y DI + L R+KLIQ+ALL+GSDYT G+
Sbjct: 928 TDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIEHELGLNRDKLIQMALLLGSDYTEGVS 987
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL-----------------------A 455
G+G V A+E++ F D + +FK W+ +
Sbjct: 988 GIGIVNAVEVMNAFPEED---------GLHKFKEWIESPDPSILGPLGAKTGLNAHKRGS 1038
Query: 456 KKNKPDTHLT--------------------------RKLRNVKLN----DDFPNVSVIEA 485
K ++ DT + K RNV N +FP+ +VI A
Sbjct: 1039 KASENDTTCSNSSGSASEENISKDLKENMAVKQSFMNKHRNVSKNWHIPSEFPSETVISA 1098
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
Y+ P ++ + + +WG PD LRR KFGW ++ D+ L+P++ + S+
Sbjct: 1099 YICPQVDKSAEPFSWGKPDHFVLRRLCWEKFGWENSKADELLLPVLNEYSKH 1150
>gi|407928397|gb|EKG21254.1| Xeroderma pigmentosum group G protein [Macrophomina phaseolina MS6]
Length = 1302
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 161/298 (54%), Gaps = 42/298 (14%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL E + R AST+ + +QE+ + + E + +L K RR
Sbjct: 872 QLATEAEEHARFASTLNNK----SQEVNAI----------DYERELKALRTQQKKDRRDA 917
Query: 316 --VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
V++ M+ E Q+LL LFG+P+I AP EAEAQCA L G++TDDSDI+LFG V
Sbjct: 918 DEVTQTMIAECQQLLSLFGLPYITAPMEAEAQCAELVDLGLVDGIVTDDSDIFLFGGTRV 977
Query: 373 YKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
YKN F++ V Y + D+ F LTR KLI +A L+GSDYT G+ GVGPVTALEIL++F
Sbjct: 978 YKNMFNQAKFVECYLSQDLESEFGLTRRKLIAIAQLLGSDYTEGIPGVGPVTALEILSEF 1037
Query: 433 SPSDSPNQNYIVESMRRFKNW---LAKKNKPDTH-----LTRKLRNVK-----LNDDFPN 479
+ F++W + +P RK R L +FP+
Sbjct: 1038 G------------DLESFRDWWRDVQSGTRPREADAAIPFRRKFRKTNAAKLFLPPNFPD 1085
Query: 480 VSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V EAYLKP+++ + WG PDLD LRRF + GWSQ R D+ L+P+++ ++ R
Sbjct: 1086 QRVEEAYLKPEVDKDDTGFVWGVPDLDALRRFLMSTVGWSQERTDEVLVPVIRDMNNR 1143
>gi|255943339|ref|XP_002562438.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587171|emb|CAP94835.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1083
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 132/227 (58%), Gaps = 23/227 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E Q+LL LFG+P+I AP EAEAQCA L G++TDDSDI+LFG VYKN F++
Sbjct: 768 ECQQLLTLFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFGGTRVYKNMFNQSK 827
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y D+ + L R+KLI A L+GSDYT G+ G+GPVTALEIL +FS
Sbjct: 828 FVECYLTSDLEKEYALHRQKLISFAHLLGSDYTEGIPGIGPVTALEILTEFS-------- 879
Query: 442 YIVESMRRFKNWLAK-----KNKPDTHLT------RKLRNVKLNDDFPNVSVIEAYLKPD 490
S+ F++W K D H+ +K + L FP+ V EAYL+P
Sbjct: 880 ----SLEEFRDWWTKLQTGTNTADDAHVAFRKKFRKKASKIFLPPSFPDTRVDEAYLEPT 935
Query: 491 INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
++ + + WG PDL+GLR F GWSQ R D+ L+P+++ +++R
Sbjct: 936 VDDDPSQFQWGVPDLNGLRAFLMTTIGWSQERTDEVLVPVIRDMNRR 982
>gi|255721529|ref|XP_002545699.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
gi|240136188|gb|EER35741.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
Length = 963
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 141/228 (61%), Gaps = 24/228 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ QELL+ FG+PFI AP EAEAQCA L G++TDDSD +LFG +YKN FD+K
Sbjct: 708 DVQELLRRFGIPFITAPMEAEAQCAELFRIGLVDGIVTDDSDCFLFGGDKIYKNMFDQKQ 767
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y D+ LTR+KLI+LALL+GSDYT G++G+GPV A+EILA+F
Sbjct: 768 YVECYMQDDLSTKMGLTRKKLIELALLLGSDYTEGIKGIGPVLAMEILAEFG-------- 819
Query: 442 YIVESMRRFKNWLAK-------KNKPDT---HLTRKLR--NVKLNDDFPNVSVIEAYLKP 489
+++FK W + K+ P T +L +++ N+ L D FP+ V AYL P
Sbjct: 820 ----DLKKFKQWFDQHTKSQVDKSNPTTLQKNLLSRIKKGNLYLPDSFPDAIVENAYLNP 875
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+++++ K WG P+LD +R F WSQ +VD+ ++P+++ +++R
Sbjct: 876 EVDSDKTKFKWGVPNLDQIRSFLMFNVSWSQTQVDEVMVPLIRDMNKR 923
>gi|401625605|gb|EJS43605.1| rad2p [Saccharomyces arboricola H-6]
Length = 1034
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 162/287 (56%), Gaps = 31/287 (10%)
Query: 270 TITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLE------LGTDKKRRPYVSRKML-E 322
I E M +E +E + + + A A +E DK+ V+ +M+ E
Sbjct: 718 NIIENMVKEQEEFDKFKNTTLVHSDERNIADNAFMEDELFEQQMKDKRDSDEVTIEMIKE 777
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
QELL FG+P++ AP EAEAQCA L G+ITDDSD++LFG VYKN F +K++
Sbjct: 778 VQELLSRFGIPYVTAPMEAEAQCAELLQLKLVDGIITDDSDVFLFGGTKVYKNMFHEKNY 837
Query: 383 VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNY 442
V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E++A+F
Sbjct: 838 VEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFG--------- 888
Query: 443 IVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLNDDFPNVSVIEAYLKPD 490
S++ FK+W +NK + L +KL N V L++DFP+V V +AY++P+
Sbjct: 889 ---SLKNFKDWYNNGQFDKLKQETENKFEKELRKKLVNNEVILDEDFPSVMVYDAYMRPE 945
Query: 491 INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
++ + WG PDLD LR F ++ GW + D+ LIP+++ ++ R
Sbjct: 946 VDHDTTPFVWGLPDLDMLRSFMKSQIGWPHEKSDEILIPLIRDVNSR 992
>gi|340923811|gb|EGS18714.1| putative DNA repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1238
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 161/291 (55%), Gaps = 23/291 (7%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL E + R AS + + RE Q+ + E + SL + RR
Sbjct: 828 QLAEEAEEHARFASQLNNKSVRENQQ--------------DYEQELRSLRSQQKRDRRDA 873
Query: 316 --VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
V++ M+ E Q LLQLFG+P+I AP EAEAQCA L G++TDDSD +LFG V
Sbjct: 874 DEVTQVMISECQTLLQLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRV 933
Query: 373 YKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
YKN F+ +V Y A +I L+RE+LI LALL+GSDYT GL GVGPVTALEIL+ F
Sbjct: 934 YKNVFNSNKYVECYLASEIESELSLSREQLISLALLLGSDYTEGLPGVGPVTALEILSHF 993
Query: 433 SPSDSPN----QNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVK--LNDDFPNVSVIEAY 486
P D + + +R + A + P R+ K L +P+ +V +AY
Sbjct: 994 PPGDKQALIQFAEWWTDVQQRGRPASADASSPWRTKFRRAHATKLFLPPGWPSPAVWDAY 1053
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L P+++++ + WG PD++GLRRF GW + + D+ L+P+++ +++R
Sbjct: 1054 LSPEVDSSPEPFQWGVPDVEGLRRFLMGTVGWGKEKTDEVLLPVVRDMNRR 1104
>gi|255711770|ref|XP_002552168.1| KLTH0B08756p [Lachancea thermotolerans]
gi|238933546|emb|CAR21730.1| KLTH0B08756p [Lachancea thermotolerans CBS 6340]
Length = 1023
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 147/242 (60%), Gaps = 25/242 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E Q+LL FG+PF+ AP EAEAQCA L + G+ITDDSDI+LF
Sbjct: 749 DKRDSDEVTAAMVAEVQDLLTRFGIPFMTAPMEAEAQCAELLMLGLVDGIITDDSDIFLF 808
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F +K++V Y + ++ L REK I+LA L+GSDYT G++ VGPV+A+E
Sbjct: 809 GGDKVYKNMFQEKNYVEYYYSDLMKKELGLDREKFIELAQLLGSDYTTGVKSVGPVSAME 868
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLA------KKNKPDTHLTRKLRN------VKLND 475
ILA+F ++ F+NW + KK + + ++LR V L+
Sbjct: 869 ILAEFG------------NLHNFRNWYSDGQFNKKKQEEEPTFEKRLRKKLVTSEVILDT 916
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+FP+ V EAYL+P+++ + + WG PDLD LR F + GW Q + D+ +IP++++++
Sbjct: 917 EFPSDLVKEAYLRPEVDHDATRFTWGVPDLDRLRSFFQSTIGWPQEKTDEVMIPLIREVN 976
Query: 536 QR 537
R
Sbjct: 977 NR 978
>gi|326433004|gb|EGD78574.1| xeroderma pigmentosum group G complementing factor [Salpingoeca sp.
ATCC 50818]
Length = 1980
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 136/216 (62%), Gaps = 11/216 (5%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+++ Q LL+LFG P+++AP EAE+QCA LE GVITDDSD++LFG R VY++ +
Sbjct: 1172 IVDVQHLLRLFGCPYVIAPQEAESQCAQLEQQGLVSGVITDDSDVFLFGGRRVYRHVCSQ 1231
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
K + Y A D+ L R LI LA L+GSDYTPG+ G+GPVTA+E++++F +DS
Sbjct: 1232 KKDMQLYLADDLENLAGLDRSSLIDLAYLLGSDYTPGVAGIGPVTAVEVISEFHNADS-- 1289
Query: 440 QNYIVESMRRFKNWLAKKNKPDTHLTR--KLRN-VKLNDDFPNVSVIEAYLKPDINTNVQ 496
++ F++W+ + P + +LRN + L+ FPN V AYL P ++ + Q
Sbjct: 1290 ------TLHDFRDWVLNPDAPRVGVRSIDRLRNTIALHPAFPNPLVRRAYLAPVVDADDQ 1343
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
W + DLDGLRRF A K GW ++R D ++P+++
Sbjct: 1344 PFTWASIDLDGLRRFVAEKLGWERHRADDYILPLVQ 1379
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW+LLE G+PV ++ LE +VLAV
Sbjct: 1 MGVKGLWQLLEVVGRPVQMDDLEGQVLAV 29
>gi|156836721|ref|XP_001642408.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112928|gb|EDO14550.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1037
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 143/242 (59%), Gaps = 25/242 (10%)
Query: 309 DKKRRPYVSRKMLEA-QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ +M+ A QELL FG+P+IVAP EAEAQCA L L G+ITDDSD++LF
Sbjct: 765 DKRDSDEVTPEMVIAVQELLSRFGIPYIVAPMEAEAQCAELLLLKLVDGIITDDSDVFLF 824
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K +V Y I L R+ +I LALL+GSDYT G++G+GPV ++E
Sbjct: 825 GGAKIYKNMFQEKKYVEFYDVQSINSNLALDRKNMIDLALLLGSDYTNGVKGLGPVLSME 884
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWL------AKKNKPDTHLTRKLRN------VKLND 475
+LA F ++ RFK W K + D+ + LR V L+
Sbjct: 885 VLADFG------------TLERFKEWYDEGMFDKSKQESDSKFRKDLRKKLIKNEVVLSS 932
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+FP+ VI++Y+ P+++ + WGTPDLD LR F + GW Q + D+ LIP++K I+
Sbjct: 933 EFPSKLVIDSYINPEVDHDKTSFVWGTPDLDMLREFMRRQIGWPQEKSDEILIPLIKDIN 992
Query: 536 QR 537
+R
Sbjct: 993 KR 994
>gi|391332092|ref|XP_003740472.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Metaseiulus occidentalis]
Length = 957
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 133/221 (60%), Gaps = 9/221 (4%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ +ELL++FG+P + AP EAEAQCA+LE QGV+TDDSDI+LFG VYKN F +
Sbjct: 692 DCEELLKMFGIPVVRAPREAEAQCAALEQAGLVQGVVTDDSDIFLFGGNVVYKNLFSQDH 751
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
Y A I +L+RE LI A+L GSDYT G++ VGPV A EI+A+F S
Sbjct: 752 QCEMYAAKTIESNLKLSREDLIGFAMLTGSDYTNGIENVGPVMACEIIAEFRSGKS---- 807
Query: 442 YIVESMRRFKNW--LAKKNK--PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
+++++ FK W LA++ P + + + L+D FP+ +V AY P + +K
Sbjct: 808 -VLKTLTEFKKWWSLAQRGAALPKNSIRTRFIKLVLDDRFPSEAVHSAYCHPTVERVKEK 866
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+W P+LD LR F A KF W Q++ D L+PI+K+ +S
Sbjct: 867 FSWSRPNLDLLRGFTAKKFNWPQDKTDGYLLPILKRYEDKS 907
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLW+LL+ +GKP+ +ETLE KVLA+ I
Sbjct: 1 MGVVGLWQLLDPTGKPIRLETLEGKVLAIDI 31
>gi|51013165|gb|AAT92876.1| YGR258C [Saccharomyces cerevisiae]
Length = 1031
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 145/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL G+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRLGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>gi|378725893|gb|EHY52352.1| DNA excision repair protein ERCC-5 [Exophiala dermatitidis
NIH/UT8656]
Length = 1319
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 162/297 (54%), Gaps = 38/297 (12%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL +E + R AS++ Q R +++ ++ + E E + + D++
Sbjct: 936 QLAIEAEEHARFASSLHNQ--RTSEQAIRDY---------ENELKQLRNQQKKDRRDADD 984
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSDI+LFG +YK
Sbjct: 985 VTQVMVQECQALLRLFGLPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFGGTRIYK 1044
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F+ V Y A D+ F L R +LI A L+GSDYT G+ G+GPVTALEIL F
Sbjct: 1045 NMFNAAKFVECYLASDLEKEFLLDRRRLISFAHLLGSDYTEGIPGIGPVTALEILTDF-- 1102
Query: 435 SDSPNQNYIVESMRRFKNW-----LAKKNKPDTHLT----RKLRNVK-----LNDDFPNV 480
ES+ FK W L + + LT RK R L +FP+
Sbjct: 1103 ----------ESLDEFKAWCDQVQLGRPQDLEDQLTTPFRRKFRKTVQKRLFLPPNFPDK 1152
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V EAYLKP++++N + WG PDLD LR F GWSQ R D+ L+P+++ +++R
Sbjct: 1153 RVDEAYLKPEVDSNPEPFQWGVPDLDKLRGFLMATIGWSQERTDEVLVPVIRDMNRR 1209
>gi|389642679|ref|XP_003718972.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|351641525|gb|EHA49388.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|440472732|gb|ELQ41574.1| DNA-repair protein rad13 [Magnaporthe oryzae Y34]
gi|440485125|gb|ELQ65111.1| DNA-repair protein rad13 [Magnaporthe oryzae P131]
Length = 1269
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 141/242 (58%), Gaps = 22/242 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL+LFG+P++ AP EAEAQCA L G++TDDSD +LF
Sbjct: 902 DRRDADEVSQVMVTECQQLLRLFGIPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDTFLF 961
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y A D+ L++E LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 962 GGTRVYKNMFNGNKFVECYLASDLEKELSLSQENLISLAQLLGSDYTDGLPGVGPVTAVE 1021
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW-------LAKKNKPDTHLTRKLRNVK-----LND 475
IL++F D + RF +W L + RK R + L
Sbjct: 1022 ILSEFPGPD---------GLSRFADWWRQVQSSLNVSTDGWSSFLRKFRKSQATRLFLPP 1072
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
FP+ +V EAYLKP+++++ + WG PDL GLR F GWSQ R D+ L+P+++ I+
Sbjct: 1073 GFPSPAVPEAYLKPEVDSDPEPFQWGAPDLSGLRDFLMATIGWSQERTDEVLVPVIRDIN 1132
Query: 536 QR 537
+R
Sbjct: 1133 RR 1134
>gi|398403715|ref|XP_003853324.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
gi|339473206|gb|EGP88300.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
Length = 1324
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 132/230 (57%), Gaps = 24/230 (10%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG +YKN F++
Sbjct: 975 ITECQALLRLFGLPYITAPMEAEAQCAELVKLGLVDGIVTDDSDCFLFGGTRIYKNMFNQ 1034
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D+ F+LTR KLI +A L+GSDYT GL GVGPVTALEI+++F
Sbjct: 1035 AKFVECYLTSDLEKEFDLTRGKLISVAHLLGSDYTEGLPGVGPVTALEIISEFG------ 1088
Query: 440 QNYIVESMRRFKNW--------LAKKNKPDTHLTRKLR----NVKLNDDFPNVSVIEAYL 487
S+ FK W + K D +K R + L FP+ V AY
Sbjct: 1089 ------SLDNFKTWWSGVQMNQIPKSEDADKPFRKKFRRNATKIFLPPSFPDARVDIAYQ 1142
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+P+++++ Q WG PDLD LR F GWSQ R D+ L+P++K +++R
Sbjct: 1143 EPEVDSDAQAFQWGVPDLDALRSFLMATIGWSQERTDEVLVPVIKDMNRR 1192
>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1129
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 140/231 (60%), Gaps = 24/231 (10%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ + QELL+ FG+PFI AP EAEAQCA L G++TDDSD +LFG VYKN F++
Sbjct: 868 IYDVQELLKRFGIPFITAPMEAEAQCAELLKIGLVDGIVTDDSDCFLFGGDKVYKNMFNQ 927
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
K V Y DI L+++ LI+LALL+GSDYT G++GVGPV A+EILA+F
Sbjct: 928 KQFVECYFKDDIATKIGLSQDNLIELALLLGSDYTEGIKGVGPVLAMEILAEFG------ 981
Query: 440 QNYIVESMRRFKNWLAKKNKP----------DTHLTRKLRNVKLN--DDFPNVSVIEAYL 487
S+ +FK W + K + +L K+++ KL D+FP+ V EAY
Sbjct: 982 ------SLNKFKEWFDRHTKTAEVKSNLTSLEKNLLSKVKSGKLYLPDNFPDRIVFEAYK 1035
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+P+++ + WG P+LD +R F GWSQ RVD+ +IP+++ ++++S
Sbjct: 1036 RPEVDPDKTDFVWGVPNLDQIRSFLMYNVGWSQERVDEVMIPLVRDLNKKS 1086
>gi|119468577|ref|XP_001257869.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
gi|119406021|gb|EAW15972.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
Length = 1132
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/384 (33%), Positives = 193/384 (50%), Gaps = 55/384 (14%)
Query: 179 EIEFEEEIAGGKE---EKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTS 235
E+ +E + G+ EKTE + + + + + D ++ +AK +V V E T
Sbjct: 664 EVTYERKATDGETPSTEKTETKNVAHDSPSPEPEFEDVTIRTEAKPTEVT-VTGNEPQTF 722
Query: 236 GFFDYGCDVIKSSTLEKDRD------QLLLERGKQTRLASTITEQMSREA-----QELLQ 284
D V++ D + QL E + R A+T+ + + + QEL Q
Sbjct: 723 AESDQAHVVVEDDEDFSDPEDEELMRQLAAEGEEHVRFAATLNNNVQQSSTFDYEQELRQ 782
Query: 285 LFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEA 343
L + D++ V++ M+ E Q+LL LFG+P+I AP EAEA
Sbjct: 783 LRS-----------------QQKKDRRDADEVTQVMITECQQLLSLFGLPYITAPMEAEA 825
Query: 344 QCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLI 403
QCA L G+ITDDSDI+LFG VYKN F++ V Y D+ + L R KLI
Sbjct: 826 QCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMFNQGKFVECYLTSDMEKEYALHRRKLI 885
Query: 404 QLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNK---- 459
LA L+GSDYT G+ G+GPVTALEIL +FS S++ F++W +
Sbjct: 886 SLAHLLGSDYTEGISGIGPVTALEILTEFS------------SLQEFRDWWTQIQTGMYV 933
Query: 460 PDTH--LTRKLR----NVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAA 513
P+TH RK + + + FP+ V +AYL+P ++++ WG PDL GLR F
Sbjct: 934 PETHAAFYRKFKKTATKIFIPPTFPDPQVDKAYLEPVVDSDPSPFQWGVPDLHGLRNFLM 993
Query: 514 NKFGWSQNRVDQTLIPIMKKISQR 537
GWSQ R D+ L+P+++ +++R
Sbjct: 994 TTIGWSQERTDEVLLPVIRDMNRR 1017
>gi|342878276|gb|EGU79631.1| hypothetical protein FOXB_09914 [Fusarium oxysporum Fo5176]
Length = 1260
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 146/237 (61%), Gaps = 11/237 (4%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 896 DRRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLF 955
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y DI L+RE+LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 956 GGTRVYKNMFNSNKFVECYLVGDIEKELSLSREQLISLAHLLGSDYTEGLPGVGPVTAVE 1015
Query: 428 ILAKFSPSDSPNQNY-----IVESMRRFKNWLAKKNKPDTHLTRKLRNVK--LNDDFPNV 480
IL++F P S +N+ V+S R K+ A + P RK + K L FPN
Sbjct: 1016 ILSEF-PGKSGLENFREWWRSVQSQTRPKD--ADVSTPFRKKFRKSQGTKLFLPPGFPNP 1072
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+V +AYL P+++ + + WG PD++GLR+F GWS+ R D+ L+P++K +++R
Sbjct: 1073 AVYDAYLHPEVDDSNENFQWGVPDVEGLRQFLMATIGWSKERTDEVLVPVIKDMNKR 1129
>gi|67538092|ref|XP_662820.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|40743207|gb|EAA62397.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|259484675|tpe|CBF81100.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 1141
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 130/229 (56%), Gaps = 23/229 (10%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E Q+LL+LFG+P+I AP EAEAQCA L G+ITDDSDI+LFG VYKN F++
Sbjct: 809 ITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMFNQ 868
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+V Y D+ + L R KLI A L+GSDYT G+ G+GPVTALEIL +FS
Sbjct: 869 SKYVECYLTADLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALEILTEFS------ 922
Query: 440 QNYIVESMRRFKNWLAK-------KNKPDTHLTRKLR----NVKLNDDFPNVSVIEAYLK 488
S+ F++W + N +K R + L FP+ V AYL+
Sbjct: 923 ------SLEEFRDWWTQVQTGADMSNSSHAAFYKKFRKQATKIFLPPTFPDARVDAAYLE 976
Query: 489 PDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P+ + + WG PDL GLR F GWSQ R D+ L+P+++ I+QR
Sbjct: 977 PEADRDPSPFQWGVPDLHGLRNFLMATIGWSQERTDEVLVPVIRDINQR 1025
>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 1191
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG VYKN F+
Sbjct: 878 VTECQALLRLFGIPYITAPMEAEAQCAELVKLGIVDGIVTDDSDTFLFGGTRVYKNMFNS 937
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D+ L+R++LI LA L+GSDYT GL GVGPVTA+EIL++F P S
Sbjct: 938 NKFVECYIGKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVEILSEF-PGKSGL 996
Query: 440 QNY-----IVESMRRFKNWLAKKNKPDTHLTRKLRNVK--LNDDFPNVSVIEAYLKPDIN 492
+N+ V+S R K A P RK + K L FPN +V EAYL P+++
Sbjct: 997 ENFREWWTSVQSQSRPKE--ADAASPFRKKFRKTQATKLFLPPGFPNPAVHEAYLHPEVD 1054
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ + WG PDL+GLRRF GWS+ R D+ L+P+++ +++R
Sbjct: 1055 DSAEPFQWGVPDLEGLRRFLMATIGWSKERTDEVLVPVIRDMNKR 1099
>gi|297815070|ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321256|gb|EFH51677.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1463
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 147/249 (59%), Gaps = 27/249 (10%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E N G++TDDSD++LFGAR+VYK
Sbjct: 916 VSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYK 975
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD + +V Y DI L+R+K+I++A+L+GSDYT G+ G+G V A+E++ F
Sbjct: 976 NIFDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPE 1035
Query: 435 SD----------SPNQNYIVESMRRF-------KNWLAKKNKPDTHLTRKL--------- 468
D SP+ + +++ K ++ + DT +++
Sbjct: 1036 EDGLHKFREWVESPDPTILGLKIKKRGSGSVDNKGIISGASTDDTEEIKQIFMDQHRKVS 1095
Query: 469 RNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLI 528
+N + FP+ +VI AYL P ++ + +K +WG PDL LR+ KF W+ + D L+
Sbjct: 1096 KNWHIPSTFPSEAVISAYLNPQVDRSTEKFSWGKPDLSVLRKLCWEKFNWNSKKTDDLLL 1155
Query: 529 PIMKKISQR 537
P++K+ +R
Sbjct: 1156 PVLKEYEKR 1164
>gi|452987544|gb|EME87299.1| hypothetical protein MYCFIDRAFT_147956 [Pseudocercospora fijiensis
CIRAD86]
Length = 1298
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 140/242 (57%), Gaps = 25/242 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 927 DRRDADEVTQTMIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLF 986
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ F+LTREKLI +A L+GSDYT GL GVG VTALE
Sbjct: 987 GGTRVYKNMFNQAKFVECYLTSDLEKEFDLTREKLISIAQLLGSDYTEGLHGVGAVTALE 1046
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLR-NVK---LND 475
I+++F + FK W + K + RK R N K L
Sbjct: 1047 IISEFP------------DLEAFKQWWTGVQTAVIPKSADQEHPFRRKFRKNAKKLFLPP 1094
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
FP+ V AYLKP++++N + +G PDLD LR F GW+Q R D+ L+P++K ++
Sbjct: 1095 SFPDARVAMAYLKPEVDSNPEAFQFGVPDLDALRSFLMATIGWTQERTDEVLVPVIKDMN 1154
Query: 536 QR 537
+R
Sbjct: 1155 RR 1156
>gi|190346361|gb|EDK38425.2| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 171/301 (56%), Gaps = 32/301 (10%)
Query: 250 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTD 309
E+D +Q LL KQ R E++ + L+ +P I A ++ Q +
Sbjct: 712 FEEDDEQKLL---KQMRDEDADHERLK---SDFLKAAEIP-ITATSISDEQMLQEQYNKA 764
Query: 310 KKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
K+ V+ M+ + QELL+ FG+P+I AP EAEAQCA L G+ITDDSD +LFG
Sbjct: 765 KRDSDEVTETMIRDVQELLKRFGIPYITAPMEAEAQCAELMKLGLVDGIITDDSDCFLFG 824
Query: 369 ARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
+ VYKN F++K +V Y +I + L ++ LI+LALL+GSDYT G++G+GPV A+EI
Sbjct: 825 GQKVYKNMFNQKQYVECYFIDEISHKVGLDQKNLIELALLLGSDYTEGIKGIGPVMAVEI 884
Query: 429 LAKFSPSDSPNQNYIVESMRRFKNWLAKKN---------KP-DTHLTRKLRNVK--LNDD 476
LA+FS ++ FKNWL K + P L +++N K L +
Sbjct: 885 LAEFS------------NLTNFKNWLDKNSISVVDESELSPLKKSLLNRVKNGKLFLPNS 932
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V +AYL P+++ + WG P+LD +R F GWSQ+RVD+ ++P+++ +++
Sbjct: 933 FPDTVVFDAYLNPEVDDDTTPFRWGVPNLDQIRSFLMYNVGWSQSRVDEVMVPLIRDMNR 992
Query: 537 R 537
+
Sbjct: 993 K 993
>gi|146417652|ref|XP_001484794.1| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 171/301 (56%), Gaps = 32/301 (10%)
Query: 250 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTD 309
E+D +Q LL KQ R E++ + L+ +P I A ++ Q +
Sbjct: 712 FEEDDEQKLL---KQMRDEDADHERLK---SDFLKAAEIP-ITATSISDEQMLQEQYNKA 764
Query: 310 KKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
K+ V+ M+ + QELL+ FG+P+I AP EAEAQCA L G+ITDDSD +LFG
Sbjct: 765 KRDSDEVTETMIRDVQELLKRFGIPYITAPMEAEAQCAELMKLGLVDGIITDDSDCFLFG 824
Query: 369 ARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
+ VYKN F++K +V Y +I + L ++ LI+LALL+GSDYT G++G+GPV A+EI
Sbjct: 825 GQKVYKNMFNQKQYVECYFIDEISHKVGLDQKNLIELALLLGSDYTEGIKGIGPVMAVEI 884
Query: 429 LAKFSPSDSPNQNYIVESMRRFKNWLAKKN---------KP-DTHLTRKLRNVK--LNDD 476
LA+FS ++ FKNWL K + P L +++N K L +
Sbjct: 885 LAEFS------------NLTNFKNWLDKNSISVVDESELSPLKKSLLNRVKNGKLFLPNS 932
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V +AYL P+++ + WG P+LD +R F GWSQ+RVD+ ++P+++ +++
Sbjct: 933 FPDTVVFDAYLNPEVDDDTTPFRWGVPNLDQIRSFLMYNVGWSQSRVDEVMVPLIRDMNR 992
Query: 537 R 537
+
Sbjct: 993 K 993
>gi|213404960|ref|XP_002173252.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
gi|212001299|gb|EEB06959.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
Length = 1199
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 143/234 (61%), Gaps = 21/234 (8%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V+++M+ E QELL+ FG+P+IVAP EAEAQCA L GV+TDDSD++LFG +Y+
Sbjct: 822 VNQEMVRECQELLRYFGLPYIVAPQEAEAQCAKLLELKLVDGVVTDDSDVFLFGGTRIYR 881
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F++ V Y + D+ F + R++LIQLA L+GSDYT GL VGPV+A+EIL +F
Sbjct: 882 NMFNQSKFVELYLSSDMERDFAIGRKQLIQLAYLLGSDYTEGLSSVGPVSAVEILREF-- 939
Query: 435 SDSPNQNYIVESMRRFKNWLAK-------KNKPDTHLTRKLRN----VKLNDDFPNVSVI 483
P N ++E FK W + N T + R+L + L +FP+ V
Sbjct: 940 ---PGDNPLIE----FKRWFLRIASGSPLVNDLGTPVRRRLSKLVGRISLPTNFPDPVVE 992
Query: 484 EAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
EAYL P ++ + Q+ WG PDLD LR F GWSQ + DQ L+P+++ ++++
Sbjct: 993 EAYLNPTVDDSKQEFQWGIPDLDQLRDFLMTTIGWSQAKTDQVLVPVIQDMTRK 1046
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW +LE +PV +ETL NK LA+
Sbjct: 1 MGVTGLWSILEPVNRPVKLETLANKRLAI 29
>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
Length = 1168
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 144/237 (60%), Gaps = 11/237 (4%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 865 DRRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGIVDGIVTDDSDTFLF 924
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y + D+ L+R++LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 925 GGTRVYKNMFNSNKFVECYISKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVE 984
Query: 428 ILAKFSPSDSPNQNY-----IVESMRRFKNWLAKKNKPDTHLTRKLRNVK--LNDDFPNV 480
IL++F P S +++ V+S R K A P RK + K L FPN
Sbjct: 985 ILSEF-PGKSGLEDFREWWTSVQSQSRPKE--ADAASPFRKKFRKTQATKLFLPPGFPNP 1041
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+V EAYL P+++ + WG PDL+GLRRF GWS+ R D+ L+P+++ +++R
Sbjct: 1042 AVYEAYLHPEVDDTAEPFQWGVPDLEGLRRFLMATIGWSKERTDEVLVPVIRDMNKR 1098
>gi|121699074|ref|XP_001267903.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
gi|119396045|gb|EAW06477.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
Length = 1140
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 140/241 (58%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q+LL+LFG+P++ AP EAEAQCA L G+ITDDSDI+LF
Sbjct: 808 DRRDADEVTQVMITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDIFLF 867
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ +V Y D+ + L R KLI A L+GSDYT G+ G+GPVTALE
Sbjct: 868 GGTRVYKNMFNQSKYVECYLTSDMEKEYALQRRKLISFAHLLGSDYTEGISGIGPVTALE 927
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW-------LAKKNKPDTHLTRKLR----NVKLNDD 476
IL +FS S+ F++W ++ N +K R + L
Sbjct: 928 ILTEFS------------SLEEFRDWWTQIQTGMSIPNDQHAAFYKKFRKTATKIFLPPS 975
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL+P+++++ WG PDL GLR F GWSQ R D+ L+P+++ +++
Sbjct: 976 FPDARVDTAYLEPEVDSDPSPFQWGVPDLHGLRDFLMTTIGWSQERTDEILVPVIRDMNR 1035
Query: 537 R 537
R
Sbjct: 1036 R 1036
>gi|242041837|ref|XP_002468313.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
gi|241922167|gb|EER95311.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
Length = 1489
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 188/388 (48%), Gaps = 79/388 (20%)
Query: 197 IKLTREMLAEQQKIL-DSLVKKKA-KSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDR 254
I T E L+ Q+ +L D L+ A + ++ VDL K +T E D
Sbjct: 777 IASTGETLSHQKDLLIDELLADTAEQKENATQVDL----------------KFATSEIDY 820
Query: 255 DQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRP 314
Q+ T AS + ++SR QE + L + E+ A+ S E+
Sbjct: 821 TQICDNDDNHTISASYVDAELSRLRQEQIDLGHERRKL---ESHAESVSSEM-------- 869
Query: 315 YVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
E QELLQ+FG+P+I+AP EAEAQCA +E+ N GV+TDDSD++LFGAR VYK
Sbjct: 870 -----FAECQELLQMFGLPYIIAPTEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYK 924
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD + +V Y DI LTRE+LI++ALL+GSDYT G+ G+G V A+E++ F
Sbjct: 925 NIFDDRKYVETYFMKDIESELGLTREQLIRMALLLGSDYTEGVSGIGIVNAIEVVHAFPE 984
Query: 435 SD----------SPNQNYI----VESMRRFKNWLAKKNKPDTH----------------- 463
D SP+ + VE+ R K N D
Sbjct: 985 EDGLQKFKEWIESPDPSIFGKLHVEASGRSKKRKLGGNDSDGKGKGLEPECIQGSDDKQS 1044
Query: 464 ----------LTRKLRNVKLN----DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLR 509
K RNV N FP+ SV+ AY+ P ++ +++ +WG PDL LR
Sbjct: 1045 SNEAEHVKEIFMSKHRNVSKNWHIPATFPSESVVNAYISPQVDNSMEPFSWGRPDLGLLR 1104
Query: 510 RFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ +FGW + + D+ LIP++++ ++
Sbjct: 1105 KLCWERFGWGKEKADELLIPVLREYNKH 1132
>gi|354547816|emb|CCE44551.1| hypothetical protein CPAR2_403540 [Candida parapsilosis]
Length = 994
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 148/255 (58%), Gaps = 26/255 (10%)
Query: 297 AEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
E Q +L K+ V+ M+ + QELL+ FG+P+I AP EAEAQCA L
Sbjct: 709 TEEQLLQEKLHKAKRDSDEVTENMIGDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVD 768
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G+ITDDSD +LFG +YKN F +K V Y DI L+RE LI+LA+L+GSDYT
Sbjct: 769 GIITDDSDCFLFGGDRIYKNMFSQKQFVECYLKNDIEDKIGLSRENLIELAILLGSDYTE 828
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKP-----------DTHL 464
G++G+GPV A+EILA+F S++ FK W +K K +L
Sbjct: 829 GIKGIGPVLAVEILAEFG------------SLQGFKKWFDEKTKTTKLDQGVLTPLQKNL 876
Query: 465 TRKLRNVK--LNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
T +++N K L D+FP+ + EAY P+++++ + WG P+LD +R F WSQ R
Sbjct: 877 TNRIKNGKLFLPDNFPDKVIFEAYQHPEVDSDKSEFKWGIPNLDQIRSFLMFNVNWSQER 936
Query: 523 VDQTLIPIMKKISQR 537
VD+ ++P+++ ++++
Sbjct: 937 VDEVMVPLIRDLNKK 951
>gi|429853644|gb|ELA28704.1| DNA excision repair protein rad2 [Colletotrichum gloeosporioides Nara
gc5]
Length = 1240
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 137/231 (59%), Gaps = 22/231 (9%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG VYKN F+
Sbjct: 908 VTECQALLRLFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFGGTRVYKNMFNS 967
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D+ L+R++LI +A L+GSDYT GL GVGPVTA+EIL++F D
Sbjct: 968 NKFVECYLGSDLEKELSLSRDQLIAIAQLLGSDYTEGLPGVGPVTAVEILSEFPGKD--- 1024
Query: 440 QNYIVESMRRFKNWL--------AKKNKPDTHLTRKLRNVK-----LNDDFPNVSVIEAY 486
+ +F++W K+ RK R + L FPN +V +AY
Sbjct: 1025 ------GLAKFRDWWQEVQMNSRPKEADATNPFRRKFRKSQATKLFLPTGFPNPAVTDAY 1078
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L+P+++++ ++ WG PDL+GLR+F GWS+ R D+ L+P+++ +++R
Sbjct: 1079 LRPEVDSSPEQFQWGVPDLEGLRQFLMATIGWSKERTDEVLVPVIRDMNKR 1129
>gi|448121834|ref|XP_004204307.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358349846|emb|CCE73125.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1063
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 145/230 (63%), Gaps = 26/230 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ QELL+ FG+P+I+AP EAEAQCA L G+ITDDSD +LFG VYKN F++K
Sbjct: 803 DVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDSDCFLFGGDKVYKNMFNQKK 862
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y+ DI + L+++ LI+LALL+GSDYT G++G+GPV A+EILA+F
Sbjct: 863 YVECYSQKDIESHLGLSQDNLIELALLLGSDYTRGVKGIGPVLAVEILAEFG-------- 914
Query: 442 YIVESMRRFKNW----LAKKNKPD----THLTRKLRN------VKLNDDFPNVSVIEAYL 487
S+ +FK W + + PD T L + L N + L++ FP++ V +AY
Sbjct: 915 ----SLEKFKEWFDANVHRTKPPDKSKMTSLQKNLLNRVKNGSLYLSETFPDMVVFDAYK 970
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+P+++++ WG P+L+ +R + GW+Q+RVD+ ++P+++ I+++
Sbjct: 971 RPEVDSDTTSFKWGIPNLNDIRSYLIYNVGWTQSRVDEVMVPLIRDINRK 1020
>gi|50302949|ref|XP_451412.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640543|emb|CAH03000.1| KLLA0A09427p [Kluyveromyces lactis]
Length = 1011
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 145/242 (59%), Gaps = 25/242 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ +M+ E Q LL FG+P+I AP EAEAQCA+L GVITDDSD++LF
Sbjct: 739 DKRDADEVTIEMIHEIQSLLSRFGIPYITAPMEAEAQCATLLQLKLVDGVITDDSDVFLF 798
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F +K++V Y+ L R+KLIQLA L+GSDYTPGL+G+GPV +E
Sbjct: 799 GGTHVYKNMFQEKNYVEYYSLDLFDQKLGLDRDKLIQLAQLLGSDYTPGLRGIGPVMGVE 858
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWL------AKKNKPDTHLTRKLRN------VKLND 475
ILA+F S++ F W +K + +T ++LR + L+D
Sbjct: 859 ILAEFG------------SLKEFAKWYNEGQFDKQKLEGETAFQKQLRKRLVSNEIILDD 906
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+FP+ +V +AY+ P ++ + K WG+PDLD LR F GW + + D+ LIP+++ ++
Sbjct: 907 NFPSEAVYDAYIHPTVDADKTKFVWGSPDLDKLRSFLQQTIGWDKAKSDEVLIPLIRDLN 966
Query: 536 QR 537
+R
Sbjct: 967 KR 968
>gi|406864117|gb|EKD17163.1| DNA excision repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1423
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 131/229 (57%), Gaps = 22/229 (9%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E Q LL+LFG+P+I AP EAEAQCA L GV+TDD DI+LFG VYKN F+
Sbjct: 1004 ECQALLRLFGLPYITAPMEAEAQCAELVNLGLVDGVVTDDCDIFLFGGTRVYKNMFNSNK 1063
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y A DI L+R++LI +A L+GSDYT GL GVGPVTA+EIL++F D
Sbjct: 1064 YVECYLASDIEKELSLSRDQLIAIAHLLGSDYTEGLPGVGPVTAIEILSEFPSKD----- 1118
Query: 442 YIVESMRRFKNWLAKKNKP--------DTHLTRKLRNVK-----LNDDFPNVSVIEAYLK 488
+ FK W +P + +K R + L FP+ +V EAY K
Sbjct: 1119 ----GLEEFKEWFTSIQRPHAPPLNTESSTFRKKFRRQQATKLFLPTGFPSKAVTEAYWK 1174
Query: 489 PDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P+++ + WG PDL+ LR F GWSQ R D+ L+P+++ +++R
Sbjct: 1175 PEVDKTPEAFQWGVPDLEKLRDFLMATIGWSQERTDEVLVPVIRDMNRR 1223
>gi|444316930|ref|XP_004179122.1| hypothetical protein TBLA_0B07870 [Tetrapisispora blattae CBS 6284]
gi|387512162|emb|CCH59603.1| hypothetical protein TBLA_0B07870 [Tetrapisispora blattae CBS 6284]
Length = 1155
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 140/242 (57%), Gaps = 25/242 (10%)
Query: 309 DKKRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M L+ QELL FG+PFI AP EAEAQCA L G++TDDSD++LF
Sbjct: 883 DKRDSDEVTTDMILDVQELLSRFGIPFITAPMEAEAQCAELINLKLVDGIVTDDSDVFLF 942
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F +K +V Y I L RE +I+L L+GSDYT G++G+GPV+++E
Sbjct: 943 GGTKVYKNMFHEKHYVEYYDNDVIFRNLGLDREYMIELVELLGSDYTTGIKGMGPVSSME 1002
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWL----------AKKNKPDTHLTRKL--RNVKLND 475
+LA+F +++ FK W K+NK L +KL V +
Sbjct: 1003 VLAEFG------------NLKNFKEWYNEGQFDKSKQEKENKFQKDLRKKLVKNGVIFEN 1050
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFPN V +AY+ P+++ + WG PDLD LR F NK GW + + D+ LIP+++ I+
Sbjct: 1051 DFPNSLVSDAYMNPEVDHDSTAFKWGVPDLDMLRTFMRNKIGWQKEKSDEILIPLIRTIN 1110
Query: 536 QR 537
QR
Sbjct: 1111 QR 1112
>gi|344305257|gb|EGW35489.1| hypothetical protein SPAPADRAFT_69718 [Spathaspora passalidarum
NRRL Y-27907]
Length = 980
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 149/254 (58%), Gaps = 25/254 (9%)
Query: 297 AEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
E Q +L K+ V+ M+ + QELL+ FG+P+I AP EAEAQCA L
Sbjct: 695 TEEQLLQEKLQKAKRDSDEVTETMINDVQELLRRFGIPYITAPMEAEAQCAELLKIGLVD 754
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G+ITDDSD LFG VYKN F++K +V Y DI L+R+KLI+LALL+GSDYT
Sbjct: 755 GIITDDSDCLLFGGDHVYKNMFNQKQYVECYIKDDIEAKVGLSRDKLIELALLLGSDYTE 814
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKP-----DTHLTRK--- 467
G++G+GPV A+EILA+F ES+ FK+W K D + RK
Sbjct: 815 GIKGIGPVLAMEILAEF------------ESLEGFKDWFDDNTKTVKSNNDLNALRKSLL 862
Query: 468 --LRNVKLN--DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
++N KL D FP+ +V AYL P+++++ + WG P+LD +R F WSQ RV
Sbjct: 863 TRIKNGKLYLPDSFPDEAVSRAYLYPEVDSDKTEFKWGVPNLDQIRSFLMFNVDWSQERV 922
Query: 524 DQTLIPIMKKISQR 537
D+ +IP+++ ++++
Sbjct: 923 DEVMIPLIRDMNRK 936
>gi|358390983|gb|EHK40388.1| hypothetical protein TRIATDRAFT_41742 [Trichoderma atroviride IMI
206040]
Length = 1172
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 141/243 (58%), Gaps = 23/243 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L N G++TDDSD +LF
Sbjct: 866 DRRDADEVTQTMITECQALLRLFGIPYITAPMEAEAQCAELVRLNMVDGIVTDDSDTFLF 925
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y D+ L+RE+LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 926 GGTRVYKNMFNSNKFVECYVGADLDKELSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 985
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWL--------AKKNKPDTHLTRKLRNVK-----LN 474
IL++F D +Q F+ W +K+ + RK R + L
Sbjct: 986 ILSEFPGKDGLDQ---------FREWWRDVQSSVRSKEADASSSFRRKFRKSQATKLFLP 1036
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FP+ +V EAYL P ++++ + WG PD+ GLR + GWS+ R D+ L+P+++ +
Sbjct: 1037 VAFPSPAVYEAYLHPVVDSSTEPFQWGVPDVAGLREYLMATIGWSKERTDEVLVPVIRDM 1096
Query: 535 SQR 537
++R
Sbjct: 1097 NKR 1099
>gi|291235424|ref|XP_002737645.1| PREDICTED: DNA-repair protein complementing XP-G cells homolog
[Saccoglossus kowalevskii]
Length = 854
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 12/197 (6%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+EA+ELL LFG+P+I + EAEAQCA L L + T G ITDDSDIWLFG + VYKN F++K
Sbjct: 661 VEAKELLTLFGLPYITSVQEAEAQCAYLNLTDQTYGTITDDSDIWLFGGKRVYKNMFNQK 720
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
V Y A +I L R+K+IQ+A LVGSDYT G+ G+G VTA+E+L +F D
Sbjct: 721 KFVECYIAENIERQLLLNRDKMIQIAYLVGSDYTTGITGIGGVTAMELLHEFEGGDK--- 777
Query: 441 NYIVESMRRFKNWLAKKNK------PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+E + +F+ W + K +T + KLR V+++ FPN++V EAY+ P I+ +
Sbjct: 778 ---LEPLNKFREWWEEAQKQVKLPSSETKVKSKLRTVQVHSGFPNINVREAYMNPAIDES 834
Query: 495 VQKLAWGTPDLDGLRRF 511
+ WG PDL LR +
Sbjct: 835 TEAFTWGLPDLTSLREY 851
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI-LYFTQG 146
MGV GLW+LLE++G+PV +E+LE K+LAV I L+ Q
Sbjct: 1 MGVKGLWRLLESTGQPVTLESLEGKILAVDISLWLNQA 38
>gi|357113521|ref|XP_003558551.1| PREDICTED: uncharacterized protein LOC100824635 [Brachypodium
distachyon]
Length = 1460
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 150/277 (54%), Gaps = 64/277 (23%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E+ N GV+TDDSD++LFGAR VYK
Sbjct: 864 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYK 923
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD + +V Y DI LTR++LI++ALL+GSDYT G+ G+G V A+E++ FS
Sbjct: 924 NIFDDRKYVETYFMKDIESELGLTRDQLIRMALLLGSDYTEGISGIGIVNAIEVVHAFSE 983
Query: 435 SDSPNQNYIVESMRRFKNWL---------------------------------------- 454
D +++F+ W+
Sbjct: 984 ED---------GLQKFREWIESPDPAILGKLEKETSDGSTRRKSGGNESSEKGNSLEPEC 1034
Query: 455 -----AKKNKPDTHLTRKL-----RNVKLN----DDFPNVSVIEAYLKPDINTNVQKLAW 500
K + +T +K+ RNV N FP+ +VI AY+ P ++ + ++ +W
Sbjct: 1035 VEGSDGKHSSNETEHIKKIFMNKHRNVSKNWHIPSTFPSETVISAYISPQVDDSTERFSW 1094
Query: 501 GTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
G PDL LR+ +FGW++ + D+ L+P++++ ++
Sbjct: 1095 GRPDLSLLRKLCWERFGWNKEKADELLLPVLREYNKH 1131
>gi|396470540|ref|XP_003838668.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
gi|312215236|emb|CBX95189.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
Length = 1312
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 139/243 (57%), Gaps = 26/243 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 961 DRRDADEVTQTMITECQHLLTLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLF 1020
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y A D+ F LTR+KLI +A L+GSDYTPG+ G+GPVTALE
Sbjct: 1021 GGTRVYKNMFNAAKFVECYLASDLASEFSLTRDKLIAIAQLLGSDYTPGIPGIGPVTALE 1080
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW-----------LAKKNKPDTHLTRKLRNVK--LN 474
IL++F + +FK W A P RK + K L
Sbjct: 1081 ILSEFP------------DLEQFKQWWTGVQDGSIPKAADATSPFRKRFRKNQATKLFLP 1128
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FP+ V +AYL P+++++ Q WG PDL LR F ++ GWS R D+ L+P+++ +
Sbjct: 1129 PTFPDPRVADAYLHPEVDSDPQPFEWGVPDLAALRAFLQSQIGWSWERTDEVLVPVIRDM 1188
Query: 535 SQR 537
++R
Sbjct: 1189 NRR 1191
>gi|414865352|tpg|DAA43909.1| TPA: hypothetical protein ZEAMMB73_723390 [Zea mays]
Length = 1531
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 172/347 (49%), Gaps = 79/347 (22%)
Query: 245 IKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
+K +T E D Q+ T AS + ++SR QE + L + E+ A+ S
Sbjct: 858 LKFATSEVDYTQICGNDDNHTISASYVDAELSRLRQEQIYLGHERRKL---ESHAESVSS 914
Query: 305 ELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDI 364
E+ E QELLQ+FG+P+I+AP EAEAQCA +E+ N GV+TDDSD+
Sbjct: 915 EM-------------FAECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDV 961
Query: 365 WLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVT 424
+LFGAR VYKN FD + +V Y DI L+RE+LI++ALL+GSDYT G+ G+G V
Sbjct: 962 FLFGARNVYKNIFDDRKYVETYFMKDIESELGLSREQLIRMALLLGSDYTEGVSGIGIVN 1021
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWL------------------AKKNK------- 459
A+E++ F D +++FK W+ +KK K
Sbjct: 1022 AIEVVHAFPEED---------GLQKFKEWIESPDPSIFGKLHMEISGRSKKRKLDENDSD 1072
Query: 460 ---------------------PDTHLTR----KLRNVKLN----DDFPNVSVIEAYLKPD 490
D H+ K RNV N FP+ V+ AY+ P
Sbjct: 1073 GKGKGLEPECIQGSDDKQSSNEDEHVKEIFMSKHRNVSKNWHVPATFPSEKVVNAYISPQ 1132
Query: 491 INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
++++ + +WG PDL LRR +FGW + + D+ L+P++++ ++
Sbjct: 1133 VDSSTEPFSWGRPDLGLLRRLCWERFGWGKEKADELLLPVLREYNKH 1179
>gi|448124207|ref|XP_004204862.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358249495|emb|CCE72561.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1067
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 144/230 (62%), Gaps = 26/230 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ QELL+ FG+P+I+AP EAEAQCA L G+ITDDSD +LFG VYKN F++K
Sbjct: 807 DVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDSDCFLFGGDKVYKNMFNQKK 866
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y+ DI + L+++ LI+LALL+GSDYT G++G+GPV A+EILA+F
Sbjct: 867 YVECYSQKDIESHLGLSQDNLIELALLLGSDYTRGVKGIGPVLAVEILAEFG-------- 918
Query: 442 YIVESMRRFKNW----LAKKNKPD----THLTRKLRN------VKLNDDFPNVSVIEAYL 487
S+ +FK W + PD T L + L N + L++ FP++ V +AY
Sbjct: 919 ----SLEKFKEWFDTNIHTTKPPDKSQMTSLQKNLLNRVKNGSLYLSETFPDMVVFDAYK 974
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+P+++++ WG P+L+ +R + GW+Q+RVD+ ++P+++ I+++
Sbjct: 975 RPEVDSDATPFKWGIPNLNDIRSYLIYNVGWTQSRVDEVMVPLIRDINRK 1024
>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
Length = 1209
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 161/295 (54%), Gaps = 34/295 (11%)
Query: 257 LLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYV 316
L E + R AS + + +E +E E E + + D++ V
Sbjct: 822 LAQEADEHARFASELNHKSEQENREAY------------ERELKALRTQQKKDRRDADEV 869
Query: 317 SRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG VYKN
Sbjct: 870 TQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKN 929
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F+ V Y + D+ L+RE+L+ +ALL+GSDYT GL GVGPVTA+EIL++F S
Sbjct: 930 MFNSNKLVECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVEILSEFPES 989
Query: 436 DSPNQNYIVESMRRFKNWLA--------KKNKPDTHLTRKLRNVKLND-----DFPNVSV 482
+ + F +W A K++ RK R ++ FPN +V
Sbjct: 990 EG--------GLAAFCHWWADVQGQRRPKEDDAPNAFRRKFRKSQVAKLFLPVGFPNPAV 1041
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
EAY+KP+++ + + WG P+L+GLR++ GWS+ R D+ L+P+++ +++R
Sbjct: 1042 REAYMKPEVDDSPETFQWGVPNLEGLRQYLMATIGWSEERTDEVLVPVIRDMNRR 1096
>gi|344228751|gb|EGV60637.1| hypothetical protein CANTEDRAFT_132346 [Candida tenuis ATCC 10573]
Length = 960
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 145/253 (57%), Gaps = 24/253 (9%)
Query: 297 AEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
E Q L K+ V++ M+ + QELL+ FG+PF+ AP EAEAQC L
Sbjct: 674 TEEQLLQERLLKQKRDSEEVTQAMINDVQELLRRFGIPFLTAPMEAEAQCVELLKLGLVD 733
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G++TDDSD +LFG VYKN F++K V Y + D+ L++EKLI+L LL+GSDYT
Sbjct: 734 GIVTDDSDTFLFGGDRVYKNMFNQKQFVECYLSEDVSGKLGLSQEKLIELGLLLGSDYTE 793
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTHLTRKLRN 470
G++G+GPV A+EILA+F S+ +FK W L KN + L + L N
Sbjct: 794 GVKGIGPVLAMEILAEFG------------SLHQFKEWFDDCNLRAKNDSSSSLKKNLLN 841
Query: 471 VKLND------DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
N FP+ V +AY+ P+++ + + WG PDLD +R F GWSQ RVD
Sbjct: 842 RIKNSKLFLPPSFPDSVVFDAYIHPEVDHSKDPIKWGVPDLDSIRSFLMYNVGWSQGRVD 901
Query: 525 QTLIPIMKKISQR 537
+ ++P+++ ++++
Sbjct: 902 EVMVPLIRDLNRK 914
>gi|225452522|ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
Length = 1513
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 147/272 (54%), Gaps = 50/272 (18%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +EL N GV+TDDSD++LFGAR+VYK
Sbjct: 834 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYK 893
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD++ +V Y DI L REK+I++ALL+GSDYT G+ G+G V A+E+L F
Sbjct: 894 NIFDERKYVETYFMKDIETELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPE 953
Query: 435 SD----------SPNQNYI----VESMRRFKNWLAKKNKPDTHLTR-------------- 466
D SP+ N + VE+ + +K D ++
Sbjct: 954 EDGLHKFREWVESPDPNILGKVNVETGSSSRKRGSKVGSGDQSHSKNNMDAFDENVSQNE 1013
Query: 467 -----------------KLRNVKLN----DDFPNVSVIEAYLKPDINTNVQKLAWGTPDL 505
K RNV N FP+ +VI AY P ++ + + +WG PDL
Sbjct: 1014 HNESVDDIQSGKQIFMDKHRNVSKNWHIPSSFPSETVISAYASPQVDQSTEPFSWGKPDL 1073
Query: 506 DGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
LR+ KFGW + D+ L+P++K+ ++
Sbjct: 1074 FVLRKLCLEKFGWGNQKADELLLPVLKEYNKH 1105
>gi|340517177|gb|EGR47422.1| predicted protein [Trichoderma reesei QM6a]
Length = 1166
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 146/243 (60%), Gaps = 23/243 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 856 DRRDADEVTQTMIAECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLF 915
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y A D+ L+RE+LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 916 GGTRVYKNMFNSNKFVECYIASDLEKEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 975
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW---LAKKNKPD-----THLTRKLRNVK-----LN 474
IL++F P ++ +V+ F+ W + + +P + RK R + L
Sbjct: 976 ILSEF-----PGKDGLVQ----FREWWKEVQSQTRPKEADAFSPFRRKFRKSQATKLFLP 1026
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FP+ +V EAYL P ++++ +K WG PD+ GLR + GWS+ R D+ L+P+++ +
Sbjct: 1027 LGFPSPAVYEAYLHPMVDSSTEKFQWGVPDVAGLREYLMATIGWSKERTDEVLVPVIRDM 1086
Query: 535 SQR 537
++R
Sbjct: 1087 NKR 1089
>gi|317140876|ref|XP_001818459.2| single-stranded DNA endonuclease [Aspergillus oryzae RIB40]
Length = 1135
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 138/241 (57%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL LFG+P+I AP EAEAQCA L G+ITDDSDI+LF
Sbjct: 795 DRRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLF 854
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ + L R KLI A L+GSDYT G+ G+GPVTALE
Sbjct: 855 GGTRVYKNMFNQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK-------KNKPDTHLTRKLR----NVKLNDD 476
IL +FS ++ F++W + + +K R + L+
Sbjct: 915 ILTEFS------------NLEEFRDWWTQVQMGMNLSDGEHAAFYKKFRKQASKIFLSPS 962
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FPN V AYL+P+++++ WG PDL GLR F GWSQ R D+ L+P+++ +++
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLHGLRNFLMATIGWSQERTDEVLVPVIRDMNR 1022
Query: 537 R 537
R
Sbjct: 1023 R 1023
>gi|83766314|dbj|BAE56457.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1066
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 138/241 (57%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL LFG+P+I AP EAEAQCA L G+ITDDSDI+LF
Sbjct: 795 DRRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLF 854
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ + L R KLI A L+GSDYT G+ G+GPVTALE
Sbjct: 855 GGTRVYKNMFNQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK-------KNKPDTHLTRKLR----NVKLNDD 476
IL +FS ++ F++W + + +K R + L+
Sbjct: 915 ILTEFS------------NLEEFRDWWTQVQMGMNLSDGEHAAFYKKFRKQASKIFLSPS 962
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FPN V AYL+P+++++ WG PDL GLR F GWSQ R D+ L+P+++ +++
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLHGLRNFLMATIGWSQERTDEVLVPVIRDMNR 1022
Query: 537 R 537
R
Sbjct: 1023 R 1023
>gi|410076602|ref|XP_003955883.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
gi|372462466|emb|CCF56748.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
Length = 988
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 142/242 (58%), Gaps = 25/242 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ + QELL FG+PF+ AP EAEAQCA L G+ITDDSD++LF
Sbjct: 716 DKRDSDEVTMDMITDVQELLSRFGIPFVTAPMEAEAQCAELIALGLVDGIITDDSDVFLF 775
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F K +V Y I + R+K+I+LALL+GSDYT G++G+GPV+++E
Sbjct: 776 GGTKVYKNLFQDKKYVEFYNYDTIEKSLGIDRKKMIELALLLGSDYTTGIKGMGPVSSME 835
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW----------LAKKNKPDTHLTRKLRN--VKLND 475
ILA+F + ++ FK W L +NK L ++L N V L+D
Sbjct: 836 ILAEF------------DDLKNFKEWYNEGQFDKKKLESQNKFQKDLRKRLVNNEVTLDD 883
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
FP+ V +AYL P+++ + WG PDLD LR F + W Q + D+ L+P++++I+
Sbjct: 884 TFPSELVFDAYLHPEVDHDSTPFVWGDPDLDMLRTFMKIRLNWPQEKSDEALVPLIREIN 943
Query: 536 QR 537
R
Sbjct: 944 GR 945
>gi|254581574|ref|XP_002496772.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
gi|238939664|emb|CAR27839.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
Length = 1030
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 156/282 (55%), Gaps = 26/282 (9%)
Query: 270 TITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGT-DKKRRPYVSRKML-EAQELL 327
I E M +E QE V A + E T DK+ V+ M+ + Q+LL
Sbjct: 719 NIAENMRKEEQEFSTFKNVLNNRVVDNAFMEDELYEQQTKDKRDSDEVTADMITDVQDLL 778
Query: 328 QLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYT 387
FGVP+I AP EAEAQCA+L GVITDDSD++LFG VYKN F ++++V Y
Sbjct: 779 SRFGVPYITAPMEAEAQCATLMRDRLVDGVITDDSDVFLFGGNKVYKNMFSERNYVEYYD 838
Query: 388 APDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESM 447
A I L R +I+LA L+GSDYT G++G+GPV+ +E++A+F S+
Sbjct: 839 AESIYKNLGLDRNGMIELAQLLGSDYTNGIKGMGPVSGMEVIAEFG------------SL 886
Query: 448 RRFKNWL----------AKKNKPDTHLTRKL--RNVKLNDDFPNVSVIEAYLKPDINTNV 495
F+ W ++NK L R+L V L+++FP+ +V AYL P+++ +
Sbjct: 887 EEFRKWHNEGQFDKKKQEQENKFQKDLRRRLVKNEVVLDENFPSETVKNAYLNPEVDNDK 946
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WGTPDLD LR F K GW Q + D+ L+P+++ +++R
Sbjct: 947 TEFVWGTPDLDMLRSFFKRKVGWPQEKTDEVLVPLIRDMNKR 988
>gi|393242077|gb|EJD49596.1| hypothetical protein AURDEDRAFT_182745 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 138/223 (61%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+LFG+P+I AP EAEAQCA+L +GVITDDSD++LFG+ V+KN F++ V
Sbjct: 891 LLRLFGIPYITAPMEAEAQCATLVALGLVEGVITDDSDVFLFGSARVFKNMFNQSKTVEC 950
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ A D+ L R+KLI+LA L+GSDY GL GVGPV A+EIL +F +D
Sbjct: 951 FIAGDLTRELGLDRDKLIRLAYLLGSDYVDGLPGVGPVVAMEILEEFPGAD--------- 1001
Query: 446 SMRRFKNWLAK----KNKPDTHLT-------RKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +F+ W K K+KP+ + + +K +++ L DD+PN V +AY P ++ +
Sbjct: 1002 GLHKFREWWVKVQSGKDKPEDNQSAFRKRFKKKFKSLHLEDDWPNAVVRDAYYHPTVDES 1061
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD L+ F + GW Q++VD L+PI+ ++ QR
Sbjct: 1062 DEPFKWGLPDLDALQHFLGQELGWGQDKVDDLLLPIIHRMGQR 1104
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLWKL+ G+PV +ET+E K +A+
Sbjct: 1 MGVKGLWKLVGPVGRPVLLETVEGKTMAI 29
>gi|408388533|gb|EKJ68217.1| hypothetical protein FPSE_11684 [Fusarium pseudograminearum CS3096]
Length = 1224
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 145/237 (61%), Gaps = 11/237 (4%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P++ AP EAEAQCA L G++TDDSD +LF
Sbjct: 887 DRRDADEVTQVMITECQALLRLFGIPYVTAPMEAEAQCAELVNLGLVDGIVTDDSDTFLF 946
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y DI LTRE+LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 947 GGTRVYKNMFNSNKFVECYLVSDIEKELSLTREQLISLAHLLGSDYTEGLPGVGPVTAVE 1006
Query: 428 ILAKFSPSDSPNQNY-----IVESMRRFKNWLAKKNKPDTHLTRKLRNVK--LNDDFPNV 480
IL++F P S N+ V+S R K+ A + P RK + K L FP+
Sbjct: 1007 ILSEF-PGRSGLNNFREWWKSVQSQTRPKD--ADVSTPFRKKFRKSQGTKLFLPPSFPSP 1063
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+V +AYL P+++ + + WG PD++GLR+F GWS+ R D+ L+P++K +++R
Sbjct: 1064 AVNDAYLHPEVDDSNEDFQWGVPDVEGLRQFLMATIGWSKERTDEVLVPVIKDMNKR 1120
>gi|212540874|ref|XP_002150592.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
gi|210067891|gb|EEA21983.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
Length = 1127
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 143/241 (59%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ +S+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 815 DRRDADEISQIMVSECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLF 874
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F++ V + + D+ + L R KLIQ A L+GSDYT G+ GVGPVTALE
Sbjct: 875 GGTRIYKNMFNQSKFVECFLSNDLEKEYALDRVKLIQFAHLLGSDYTEGIPGVGPVTALE 934
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK-------KNKPDTHLTRKLR----NVKLNDD 476
I+ +F+ ++ F++W + N P +K + V L
Sbjct: 935 IITEFN------------NLEEFRDWWMQVQMGVEIPNDPHQQFRKKFKKMATKVFLPPS 982
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ + EAY++P+++++ + WG PDL+GLR F GWSQ R D+ L+P+++ +++
Sbjct: 983 FPDRHIDEAYMQPEVDSDPSEFQWGVPDLNGLRSFLMATIGWSQQRTDEVLVPVIRDMNK 1042
Query: 537 R 537
R
Sbjct: 1043 R 1043
>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
Length = 1034
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 144/237 (60%), Gaps = 27/237 (11%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V+ M+ + QELL+ FG+P+I AP EAEAQCA L N G+ITDDSD +LFG VYK
Sbjct: 767 VTETMIRDVQELLRRFGIPYITAPMEAEAQCAELLKLNLVDGIITDDSDCFLFGGDKVYK 826
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F++K +V Y DI L++EKLI LALL+GSDYT G++G+GPV A+EILA+F
Sbjct: 827 NMFNQKQYVECYIMNDINSRMGLSQEKLIDLALLLGSDYTEGIKGIGPVMAMEILAEFG- 885
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNK----PD----THLTRKLRN-VK-----LNDDFPNV 480
S+++FK W + K PD T + R L N +K L + FP+
Sbjct: 886 -----------SLKKFKQWFDENTKTTVPPDKSGLTSIKRSLLNRIKNGTFFLPESFPDN 934
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ +AY +P+++ + + WG P LD +R F WSQ RVD+ ++P+++ ++++
Sbjct: 935 VIFDAYKQPEVDHDKSEFKWGVPSLDQIRSFLMYNVSWSQARVDEVMVPLIRDMNRK 991
>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
Length = 1121
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 160/299 (53%), Gaps = 46/299 (15%)
Query: 256 QLLLERGKQTRLASTITEQMSRE-----AQELLQLFGVPFIVAPGEAEAQCASLELGTDK 310
QL +E + R AST+ + E QEL QL + D+
Sbjct: 740 QLAMEAEEHARFASTLNSKSQAENAFDYEQELKQLRS-----------------QQKKDR 782
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+ VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG
Sbjct: 783 RDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGG 842
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+YKN F++ +V Y + D+ + L R+KLI + L+GSDYT G+ G+GPVTALEIL
Sbjct: 843 TRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEIL 902
Query: 430 AKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTH------LTRKLRNVKLNDDFP 478
+FS + F++W L K D H + + + L FP
Sbjct: 903 TEFS------------DLEEFRDWWSQVQLGYKIPDDPHEGFRKKFKKNVTKLFLPPGFP 950
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
N +V +AYL+P+++++ WG PDLD +R+F GWS R D+ L+P+++ +++R
Sbjct: 951 NKAVEKAYLEPEVDSDPSGFIWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDVNRR 1009
>gi|261198979|ref|XP_002625891.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis SLH14081]
gi|239595043|gb|EEQ77624.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis SLH14081]
Length = 1128
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 168/323 (52%), Gaps = 51/323 (15%)
Query: 234 TSGFFDYGCDVIKSSTLEKDR--DQLLLERGKQTRLASTITEQMSRE-----AQELLQLF 286
++ ++D G D S E D QL E + R AST+ + E QEL QL
Sbjct: 727 STRYYDDGDDF---SDPEDDELMHQLQKEAEEHARFASTLNSKSQAENAFNYEQELRQLR 783
Query: 287 GVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQC 345
+ D++ VS M+ E QELL+LFG+P+I AP EAEAQC
Sbjct: 784 S-----------------QQKKDRRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQC 826
Query: 346 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQL 405
A L GV+TDDSDI+LFG VYKN F+ V Y + D+ + L R KLIQ
Sbjct: 827 AELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFNTVKFVECYLSNDLEKEYNLDRSKLIQF 886
Query: 406 ALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKP 460
A L+GSDYT G+ GVGPVTALEIL +F ++ F++W + K
Sbjct: 887 AHLLGSDYTEGIPGVGPVTALEILTEFP------------TLEDFRDWWSQVQMGAKLPE 934
Query: 461 DTH------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAAN 514
D+H + + + L FP+ + AYL+P+++++ WG PDL+ LR+F +
Sbjct: 935 DSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAFQWGVPDLNALRQFLMS 994
Query: 515 KFGWSQNRVDQTLIPIMKKISQR 537
GWSQ R D+ L+P+++ +++R
Sbjct: 995 TIGWSQERTDEVLVPVIRDMNRR 1017
>gi|326663749|ref|XP_003197653.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Danio rerio]
Length = 1022
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 136/211 (64%), Gaps = 16/211 (7%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E+QELL+LFGVPFIVAP EAEAQCA+L+ + T G ITDDSDIWLFG R VY+NFF++
Sbjct: 661 ESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDDSDIWLFGGRHVYRNFFNQNK 720
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y D++ L R KLI LA L+GSDYT G+ GVG VT +EIL +F +
Sbjct: 721 YVEHYQIVDMQNQLGLDRSKLINLAYLLGSDYTEGIPGVGYVTGMEILNEFPGAG----- 775
Query: 442 YIVESMRRFKNWL--AKKNK------PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
+E + + W A++NK DT + +KLRN++++ FPN +V +AYL+P ++
Sbjct: 776 --LEPLVQLSEWWTEAQENKKLSVNPKDTKVKKKLRNLQIHPGFPNPAVAQAYLQPSVDQ 833
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
+ +WG P LD ++ + + K +Q R+D
Sbjct: 834 SDASFSWGRPHLDLIKEYPSPKPA-TQLRID 863
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV+GLWKLLE++GKP+ ETLE K+LAV I + + DR
Sbjct: 1 MGVHGLWKLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDR 45
>gi|238484915|ref|XP_002373696.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
gi|220701746|gb|EED58084.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
Length = 1135
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 138/241 (57%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL LFG+P+I AP EAEAQCA L G+ITDDSDI+LF
Sbjct: 795 DRRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLF 854
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ + L R KLI A L+GSDYT G+ G+GPVTALE
Sbjct: 855 GGTRVYKNMFNQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK-------KNKPDTHLTRKLR----NVKLNDD 476
IL +FS ++ F++W + + +K R + L+
Sbjct: 915 ILTEFS------------NLEEFRDWWTQVQMGMNLSDGEHAAFYKKFRKQASKIFLSPS 962
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FPN V AYL+P+++++ WG PDL GLR F GWSQ R D+ L+P+++ +++
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLHGLRDFLMATIGWSQERTDEVLVPVIRDMNR 1022
Query: 537 R 537
R
Sbjct: 1023 R 1023
>gi|400603046|gb|EJP70644.1| DNA excision repair protein [Beauveria bassiana ARSEF 2860]
Length = 1154
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 144/244 (59%), Gaps = 23/244 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 856 DRRDADEVTQVMVSECQSLLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLF 915
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y ++ L+R++LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 916 GGTRVYKNMFNSNKFVECYLGNELEKDLSLSRQQLIALAHLLGSDYTEGLPGVGPVTAVE 975
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW---LAKKNKP-----DTHLTRKLRNVK-----LN 474
I+++F D + RF+ W + +++P D+ +K R + L
Sbjct: 976 IISEFPGKD---------GLARFREWWDEVQVQSRPKAADADSPFRKKFRRTQAAKLFLP 1026
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FPN +V +AYL P ++ + + WG PD++GLRRF GW++ R D+ L+P+++ +
Sbjct: 1027 PGFPNSAVDDAYLHPQVDDSAEPFQWGVPDVEGLRRFLMATIGWTKERTDEVLVPVIRDM 1086
Query: 535 SQRS 538
++R
Sbjct: 1087 NRRG 1090
>gi|403217913|emb|CCK72405.1| hypothetical protein KNAG_0K00370 [Kazachstania naganishii CBS
8797]
Length = 979
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 144/243 (59%), Gaps = 25/243 (10%)
Query: 309 DKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ +M+E QELL FG+PFIV+P EAEAQCA L N G+ITDDSD++LF
Sbjct: 706 DKRDADEVTPQMVEDIQELLSRFGIPFIVSPMEAEAQCAELLGLNLVDGIITDDSDVFLF 765
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F + +V Y I + R ++I+LALL+GSDYTPG++ +GPV+++E
Sbjct: 766 GGTKVYKNLFQDRKYVEYYDYETIVRSLGIDRAQMIELALLLGSDYTPGIKSMGPVSSVE 825
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWL----------AKKNKPDTHLTRKL--RNVKLND 475
ILA+F + FK W +K NK L ++L +V L+
Sbjct: 826 ILAEFG------------DLSEFKRWYEEGQLNIEAQSKDNKFRRDLRKRLVKNDVLLDP 873
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+ +VI+AYL P+++ + W PDLD LR F + GW + D+ L+P+++ I+
Sbjct: 874 DFPSGTVIDAYLHPEVDHDKTSFRWSPPDLDMLRTFLHRRLGWPDEKSDEVLVPLIRDIN 933
Query: 536 QRS 538
+RS
Sbjct: 934 RRS 936
>gi|350632743|gb|EHA21110.1| hypothetical protein ASPNIDRAFT_45646 [Aspergillus niger ATCC 1015]
Length = 1130
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 159/297 (53%), Gaps = 40/297 (13%)
Query: 255 DQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRP 314
+QL E + R A+T+ E +PF + E + L K RR
Sbjct: 746 EQLAAEGEEHVRFAATLNSTSHTE---------LPF-----DYEQELRQLRSQQKKDRRD 791
Query: 315 Y--VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG
Sbjct: 792 ADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTR 851
Query: 372 VYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
VYKN F++ V Y D+ + L R KLI+LA L+GSDYT G+ G+GPVTALEIL +
Sbjct: 852 VYKNMFNQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTE 911
Query: 432 FSPSDSPNQNYIVESMRRFKNWLAKKNKP-----DTHLT------RKLRNVKLNDDFPNV 480
F ++ F++W + D+H T + + L FP+
Sbjct: 912 FG------------TLEDFRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDP 959
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V AYL+P+++++ WG PDL GLR F + GWSQ R D+ L+P+++ +++R
Sbjct: 960 RVDAAYLEPEVDSDPSPFQWGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRR 1016
>gi|391869945|gb|EIT79134.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 1066
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 138/241 (57%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL LFG+P+I AP EAEAQCA L G+ITDDSDI+LF
Sbjct: 795 DRRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLF 854
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ + L R KLI A L+GSDYT G+ G+GPVTALE
Sbjct: 855 GGTRVYKNMFNQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK-------KNKPDTHLTRKLR----NVKLNDD 476
IL +FS ++ F++W + + +K R + L+
Sbjct: 915 ILTEFS------------NLEEFRDWWTQVQMGMNLSDGEHAAFYKKFRKQASKIFLSPS 962
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FPN V AYL+P+++++ WG PDL GLR F GWSQ R D+ L+P+++ +++
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLHGLRDFLMATIGWSQERTDEVLVPVIRDMNR 1022
Query: 537 R 537
R
Sbjct: 1023 R 1023
>gi|239609845|gb|EEQ86832.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ER-3]
Length = 1166
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 168/323 (52%), Gaps = 51/323 (15%)
Query: 234 TSGFFDYGCDVIKSSTLEKDR--DQLLLERGKQTRLASTITEQMSRE-----AQELLQLF 286
++ ++D G D S E D QL E + R AST+ + E QEL QL
Sbjct: 765 STRYYDDGDDF---SDPEDDELMHQLQKEAEEHARFASTLNSKSQAENAFNYEQELRQLR 821
Query: 287 GVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQC 345
+ D++ VS M+ E QELL+LFG+P+I AP EAEAQC
Sbjct: 822 S-----------------QQKKDRRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQC 864
Query: 346 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQL 405
A L GV+TDDSDI+LFG VYKN F+ V Y + D+ + L R KLIQ
Sbjct: 865 AELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFNTVKFVECYLSNDLEKEYNLDRSKLIQF 924
Query: 406 ALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKP 460
A L+GSDYT G+ GVGPVTALEIL +F ++ F++W + K
Sbjct: 925 AHLLGSDYTEGIPGVGPVTALEILTEFP------------TLEDFRDWWSQVQMGAKLPE 972
Query: 461 DTH------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAAN 514
D+H + + + L FP+ + AYL+P+++++ WG PDL+ LR+F +
Sbjct: 973 DSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAFQWGVPDLNALRQFLMS 1032
Query: 515 KFGWSQNRVDQTLIPIMKKISQR 537
GWSQ R D+ L+P+++ +++R
Sbjct: 1033 TIGWSQERTDEVLVPVIRDMNRR 1055
>gi|361129990|gb|EHL01866.1| putative DNA repair protein rad13 [Glarea lozoyensis 74030]
Length = 1157
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 132/229 (57%), Gaps = 22/229 (9%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E Q LL+ FG+P+I+APGEAEAQCA L G ITDD DI+LFG VYKN F+
Sbjct: 783 ECQILLKKFGIPYIIAPGEAEAQCAELVRQGLVDGAITDDCDIFLFGGTRVYKNLFNSNK 842
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y DI L R+++I LA L+GSDY GL GVG VTA+E+L++FS SP
Sbjct: 843 DVECYLQKDIEQELSLGRDQMISLAQLLGSDYAEGLHGVGSVTAIELLSEFS---SPT-- 897
Query: 442 YIVESMRRFKNWLAKKNKPD--------THLTRKLRNVK-----LNDDFPNVSVIEAYLK 488
++ FK+W P + +K R + L FP+ +V EAY K
Sbjct: 898 ----GLQDFKHWWTSVQGPHPPPLSEETSTFRKKFRRAQASKLFLPAGFPSPAVAEAYYK 953
Query: 489 PDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P ++++ ++ WG PDL+GLR F GWSQ R D+ L+P+++ +++R
Sbjct: 954 PHVDSSKEEFRWGVPDLEGLRGFLMQTIGWSQERTDEVLVPVIRDMNRR 1002
>gi|327350765|gb|EGE79622.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ATCC
18188]
Length = 1166
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 168/323 (52%), Gaps = 51/323 (15%)
Query: 234 TSGFFDYGCDVIKSSTLEKDR--DQLLLERGKQTRLASTITEQMSRE-----AQELLQLF 286
++ ++D G D S E D QL E + R AST+ + E QEL QL
Sbjct: 765 STRYYDDGDDF---SDPEDDELMHQLQKEAEEHARFASTLNSKSQAENAFNYEQELRQLR 821
Query: 287 GVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQC 345
+ D++ VS M+ E QELL+LFG+P+I AP EAEAQC
Sbjct: 822 S-----------------QQKKDRRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQC 864
Query: 346 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQL 405
A L GV+TDDSDI+LFG VYKN F+ V Y + D+ + L R KLIQ
Sbjct: 865 AELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFNTVKFVECYLSNDLEKEYNLDRSKLIQF 924
Query: 406 ALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKP 460
A L+GSDYT G+ GVGPVTALEIL +F ++ F++W + K
Sbjct: 925 AHLLGSDYTEGIPGVGPVTALEILTEFP------------TLEDFRDWWSQVQMGAKLPE 972
Query: 461 DTH------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAAN 514
D+H + + + L FP+ + AYL+P+++++ WG PDL+ LR+F +
Sbjct: 973 DSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAFQWGVPDLNALRQFLMS 1032
Query: 515 KFGWSQNRVDQTLIPIMKKISQR 537
GWSQ R D+ L+P+++ +++R
Sbjct: 1033 TIGWSQERTDEVLVPVIRDMNRR 1055
>gi|346973852|gb|EGY17304.1| DNA-repair protein rad13 [Verticillium dahliae VdLs.17]
Length = 1187
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 158/282 (56%), Gaps = 27/282 (9%)
Query: 257 LLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYV 316
L E + R AS + + +E +E E E + + D++ V
Sbjct: 836 LAQEADEHARFASELNHKSEQENREAY------------ERELKALRTQQKKDRRDADEV 883
Query: 317 SRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG VYKN
Sbjct: 884 TQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKN 943
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F+ V Y + D+ L+RE+L+ +ALL+GSDYT GL GVGPVTA+EIL++F S
Sbjct: 944 MFNSNKLVECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVEILSEFPES 1003
Query: 436 DSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNV 495
+ + F +W A K + T+ V FPN +V EAY+KP+++ +
Sbjct: 1004 EG--------GLAAFCDWWADFRK--SQATKLFLPVG----FPNPAVREAYMKPEVDDSP 1049
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG P+L+GLR++ GWS+ R D+ L+P+++ +++R
Sbjct: 1050 ETFQWGVPNLEGLRQYLMATIGWSEERTDEVLVPVIRDMNRR 1091
>gi|134057863|emb|CAK38230.1| unnamed protein product [Aspergillus niger]
Length = 916
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 159/297 (53%), Gaps = 40/297 (13%)
Query: 255 DQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRP 314
+QL E + R A+T+ E +PF + E + L K RR
Sbjct: 532 EQLAAEGEEHVRFAATLNSTSHTE---------LPF-----DYEQELRQLRSQQKKDRRD 577
Query: 315 Y--VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG
Sbjct: 578 ADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTR 637
Query: 372 VYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
VYKN F++ V Y D+ + L R KLI+LA L+GSDYT G+ G+GPVTALEIL +
Sbjct: 638 VYKNMFNQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTE 697
Query: 432 FSPSDSPNQNYIVESMRRFKNWLAKKNKP-----DTHLT------RKLRNVKLNDDFPNV 480
F ++ F++W + D+H T + + L FP+
Sbjct: 698 FG------------TLEDFRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDP 745
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V AYL+P+++++ WG PDL GLR F + GWSQ R D+ L+P+++ +++R
Sbjct: 746 RVDAAYLEPEVDSDPSPFQWGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRR 802
>gi|296412156|ref|XP_002835792.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629585|emb|CAZ79949.1| unnamed protein product [Tuber melanosporum]
Length = 914
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 160/295 (54%), Gaps = 34/295 (11%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL+ E + R A+ + + ++ +E E E ++ D++
Sbjct: 503 QLVAESEEHARFAAELNNKPQQQTREGY------------ERELHTLRVQQAKDRRDADE 550
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V++ M+ E Q+LL LFG+P+I AP EAEAQCA L G++TDDSD +LFG VYK
Sbjct: 551 VTQAMVQECQQLLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYK 610
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F++ V Y A D+ + L R LI++A L+GSDYT G+ VGPVTA+E+LA+F+
Sbjct: 611 NMFNQAKFVECYLAGDLEKEYALDRTGLIRIAHLLGSDYTEGVPTVGPVTAMELLAEFA- 669
Query: 435 SDSPNQNYIVESMRRFKNWLAKKN----KP----DTHLTRKLR----NVKLNDDFPNVSV 482
+ N + E FK W KP D +K R V L +FP+ V
Sbjct: 670 ----SDNGLTE----FKEWWTAVQTGLRKPADDDDNPFRKKFRKNATKVFLPTNFPDPRV 721
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
EAY+ P+++ + + WG PDLDGLRRF GWSQ R D+ L+P++K ++ +
Sbjct: 722 DEAYMHPEVDHDPSQFEWGMPDLDGLRRFLMATVGWSQERTDEVLVPVIKDMNTK 776
>gi|47230549|emb|CAF99742.1| unnamed protein product [Tetraodon nigroviridis]
Length = 866
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 129/199 (64%), Gaps = 15/199 (7%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
LE+QELL+LFGVPF++AP EAEAQCA+L+ +HT G ITDDSD+WLFG R VYKNFF +
Sbjct: 675 LESQELLRLFGVPFLIAPMEAEAQCAALDRADHTHGTITDDSDVWLFGGRHVYKNFFSQN 734
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V + D++ L R KLI LA L+GSDYT G+ GVG VT +E+L +F+ P
Sbjct: 735 KYVEYFQYSDLQNALGLDRTKLINLAYLLGSDYTEGVAGVGYVTGMEVLNEFT---GPG- 790
Query: 441 NYIVESMRRFKNWLAKKNKP--------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
+E + +F W ++ + DT + +KLR +KL+ FPN +V +AYL+P ++
Sbjct: 791 ---LEPLVQFSKWWSEAQEKKRLVADPGDTKVKKKLRELKLHPGFPNPAVAQAYLQPCVD 847
Query: 493 TNVQKLAWGTPDLDGLRRF 511
+ +WG P +D ++ +
Sbjct: 848 QSDSGFSWGPPQVDMIKEY 866
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV+GLW+LLE++GKP+ ETLE K+LAV I + + DR
Sbjct: 1 MGVHGLWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDR 45
>gi|358387657|gb|EHK25251.1| hypothetical protein TRIVIDRAFT_208179 [Trichoderma virens Gv29-8]
Length = 1196
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 142/243 (58%), Gaps = 23/243 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 888 DRRDADEVTQTMITECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLF 947
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y D+ L+RE+LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 948 GGTRVYKNMFNSNKFVECYVGADLDKEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 1007
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW---LAKKNKP-----DTHLTRKLRNVK-----LN 474
IL++F D + +F+ W + + +P + RK R + L
Sbjct: 1008 ILSEFPGKD---------GLEKFREWWKEVQSQTRPKEADASSSFRRKFRKAQATKLFLP 1058
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FP+ +V EAYL P ++++ ++ WG PD+ GLR + GWS+ R D+ L+P+++ +
Sbjct: 1059 LGFPSPAVFEAYLHPMVDSSTEQFQWGVPDVAGLREYLMATIGWSKERTDEVLVPVIRDM 1118
Query: 535 SQR 537
++R
Sbjct: 1119 NKR 1121
>gi|150865308|ref|XP_001384465.2| hypothetical protein PICST_35911 [Scheffersomyces stipitis CBS
6054]
gi|149386564|gb|ABN66436.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 992
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 145/236 (61%), Gaps = 26/236 (11%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V++ M+ + QELL+ FG+P+I AP EAEAQCA L G+ITDDSD +LFG VYK
Sbjct: 724 VTQNMITDVQELLRRFGIPYITAPMEAEAQCAELVKIGLVDGIITDDSDCFLFGGTKVYK 783
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F++K +V Y+ D+ LTR+ LI+LALL+GSDYT G++G+GPV A+EILA+F
Sbjct: 784 NMFNQKQYVECYSQDDVVDKIGLTRKNLIELALLLGSDYTEGIKGIGPVLAMEILAEFG- 842
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKP-----------DTHLTRKLRNVK--LNDDFPNVS 481
S++ FK W +K K + +L ++RN K L + FP+
Sbjct: 843 -----------SLKNFKKWFDEKTKTVKSDKKDQTALEKNLLGRIRNGKLFLPERFPDSV 891
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V +AY P+++ + + WG P+LD +R F W+Q++VD+ +IP+++ ++++
Sbjct: 892 VFDAYEHPEVDHDRSEFKWGVPNLDQIRSFLMYNLRWTQDKVDEVMIPLIRDMNRK 947
>gi|317028500|ref|XP_001390185.2| single-stranded DNA endonuclease [Aspergillus niger CBS 513.88]
Length = 1100
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 159/297 (53%), Gaps = 40/297 (13%)
Query: 255 DQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRP 314
+QL E + R A+T+ E +PF + E + L K RR
Sbjct: 716 EQLAAEGEEHVRFAATLNSTSHTE---------LPF-----DYEQELRQLRSQQKKDRRD 761
Query: 315 Y--VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG
Sbjct: 762 ADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTR 821
Query: 372 VYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
VYKN F++ V Y D+ + L R KLI+LA L+GSDYT G+ G+GPVTALEIL +
Sbjct: 822 VYKNMFNQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTE 881
Query: 432 FSPSDSPNQNYIVESMRRFKNWLAKKNKP-----DTHLT------RKLRNVKLNDDFPNV 480
F ++ F++W + D+H T + + L FP+
Sbjct: 882 FG------------TLEDFRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDP 929
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V AYL+P+++++ WG PDL GLR F + GWSQ R D+ L+P+++ +++R
Sbjct: 930 RVDAAYLEPEVDSDPSPFQWGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRR 986
>gi|358375820|dbj|GAA92396.1| DNA excision repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 1135
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 159/297 (53%), Gaps = 40/297 (13%)
Query: 255 DQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRP 314
+QL E + R A+T+ E +PF + E + L K RR
Sbjct: 748 EQLAAEGEEHVRFAATLNSTSHTE---------LPF-----DYEQELRQLRSQQKKDRRD 793
Query: 315 Y--VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
VS+ M+ E Q+LL+LFG+P++ AP EAEAQCA L G+ITDDSD++LFG
Sbjct: 794 ADEVSQVMITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTR 853
Query: 372 VYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
VYKN F++ V Y D+ + L R KLI+LA L+GSDYT G+ G+GPVTALEIL +
Sbjct: 854 VYKNMFNQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTE 913
Query: 432 FSPSDSPNQNYIVESMRRFKNWLAKKNKP-----DTHLT------RKLRNVKLNDDFPNV 480
F ++ F++W + D+H T + + L FP+
Sbjct: 914 FG------------TLEEFRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDP 961
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V AYL+P+++++ WG PDL GLR F + GWSQ R D+ L+P+++ +++R
Sbjct: 962 RVDAAYLEPEVDSDPSPFQWGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRR 1018
>gi|255552654|ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3, putative [Ricinus communis]
Length = 1641
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 154/291 (52%), Gaps = 58/291 (19%)
Query: 304 LELGTDKKR----RPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVI 358
+ LG+++K+ VS +M E QELLQ+FG+P+I+AP EAEAQCA +EL N GV+
Sbjct: 946 MNLGSEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVV 1005
Query: 359 TDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQ 418
TDDSD++LFGAR VYKN FD + +V Y DI LTREKLI++ALL+GSDYT G+
Sbjct: 1006 TDDSDVFLFGARNVYKNIFDDRKYVETYFMKDIERELGLTREKLIRMALLLGSDYTEGIS 1065
Query: 419 GVGPVTALEILAKF--------------SP---------------------SDSPNQNYI 443
G+G V A+E++ F SP SDS N N +
Sbjct: 1066 GIGIVNAIEVVNAFPEEDGLEKFREWIYSPDPTILGKLDVRDGRSMRRKGESDSANNN-V 1124
Query: 444 VESMRRFKNWLAKKNKPDTH-------LTRKLRNVKLN----DDFPNVSVIEAYLKPDIN 492
V+S + + K+ H K RNV N FP+ +VI AY+ P ++
Sbjct: 1125 VDSFGKKVSESHKEEDSADHTQEIRQIFMDKHRNVSKNWHVPSSFPSEAVISAYMSPQVD 1184
Query: 493 TNVQKLAWGTPDLDGLRR------FAANKFGWSQNRVDQTLIPIMKKISQR 537
+ + WG PDL LRR KF W + D+ L+P++K+ ++
Sbjct: 1185 KSTEPFTWGKPDLHVLRRQVMIFIICWEKFAWGVQKSDELLLPVLKEYNKH 1235
>gi|154280855|ref|XP_001541240.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
gi|150411419|gb|EDN06807.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
Length = 1111
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 163/319 (51%), Gaps = 46/319 (14%)
Query: 237 FFDYGCDVIKSSTLEKDR--DQLLLERGKQTRLASTITEQMSRE-----AQELLQLFGVP 289
F Y D S E D QL E + R AST+ + E QEL QL
Sbjct: 705 FTQYDHDSDDFSDPEDDELIHQLQKEAEEHARFASTLNSKSQAENSFNYEQELKQL---- 760
Query: 290 FIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLE 349
+Q + D+ VS E QELL+LFG+P+I AP EAEAQCA L
Sbjct: 761 --------RSQQKKAQRDADEVSHIMVS----ECQELLRLFGLPYITAPMEAEAQCAELL 808
Query: 350 LGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLV 409
GV+TDDSDI+LFG VYKN F++ V Y + D+ + L R KLIQ A L+
Sbjct: 809 SLGLVDGVVTDDSDIFLFGGTRVYKNMFNQAKFVECYISNDLEKEYNLDRNKLIQFAHLL 868
Query: 410 GSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTH- 463
GSDYT G+ GVGPV+ALEIL +F ++ F++W + K D+H
Sbjct: 869 GSDYTEGIPGVGPVSALEILTEFP------------TLEDFRDWWSQVQMGAKLPEDSHS 916
Query: 464 -----LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW 518
+ + + L FP+ V AYL+P ++++ WG PDL+ LR+F + GW
Sbjct: 917 IFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAFQWGVPDLNALRQFLMSTIGW 976
Query: 519 SQNRVDQTLIPIMKKISQR 537
SQ R D+ L+P+++ +++R
Sbjct: 977 SQERTDEVLVPVIRDMNRR 995
>gi|326527491|dbj|BAK08020.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1503
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 156/293 (53%), Gaps = 68/293 (23%)
Query: 304 LELGTDKKR----RPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVI 358
++LG ++++ VS +M E QELLQ+FG+P+I+AP EAEAQCA +E+ N GV+
Sbjct: 855 VDLGNERRKLESHAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVV 914
Query: 359 TDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQ 418
TDDSD++LFGAR VYKN FD + +V Y DI LTRE+LI++A+L+GSDYT G+
Sbjct: 915 TDDSDVFLFGARNVYKNIFDDRKYVETYLMKDIESELGLTREQLIRMAMLLGSDYTEGIS 974
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL------------------------ 454
G+G V A+E++ F D +++F+ W+
Sbjct: 975 GIGIVNAIEVVHAFPEED---------GLQQFREWIESPDPAILGKFDVESSGSSKRRKS 1025
Query: 455 ------------------AKKNKPDTHLTRKL--------RNVKLN----DDFPNVSVIE 484
N ++ T+ + RNV N FP+ +VI
Sbjct: 1026 GGNESCEKGNSLEPECVEGSDNNQSSNETQHIKEVFMSNHRNVSKNWHIPSTFPSETVIN 1085
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
AY+ P ++ + ++ +WG PDL LR+ +FGW++ + D+ L+P++K+ ++
Sbjct: 1086 AYISPQVDDSTERFSWGRPDLSLLRKLCWERFGWNKEKADELLLPVLKEYNKH 1138
>gi|242800576|ref|XP_002483617.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC 10500]
gi|218716962|gb|EED16383.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC 10500]
Length = 1128
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 140/241 (58%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 816 DRRDADEVSQIMVSECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLF 875
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V + + D+ + L R KLIQ A L+GSDYT G+ GVGPVTALE
Sbjct: 876 GGTRVYKNMFNQSKFVECFLSSDLEKEYALDRIKLIQFAHLLGSDYTEGIPGVGPVTALE 935
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW-------LAKKNKPDTHLTRKLRNVK----LNDD 476
I+ +F+ ++ F++W + N P +K + + L
Sbjct: 936 IITEFT------------NLEEFRDWWMQVQMGMEIPNDPHQRFRKKFKKMATKIFLPPS 983
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ + EAYL P ++ + + WG PDL+GLR F GWSQ R D+ L+P+++ +++
Sbjct: 984 FPDRHIDEAYLHPAVDNDPSEFQWGVPDLNGLRSFLMATIGWSQERTDEVLVPVIRDMNK 1043
Query: 537 R 537
R
Sbjct: 1044 R 1044
>gi|409077739|gb|EKM78104.1| hypothetical protein AGABI1DRAFT_61094 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1128
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 135/223 (60%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA L GVITDDSD++LFGA+ VYKN F++ V
Sbjct: 760 MLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNMFNQSKTVEL 819
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R+ L++LA L+GSDYT GL GVGPV A+E+L +F PN+ E
Sbjct: 820 FLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKEF-----PNK----E 870
Query: 446 SMRRFKNWLAK-----------KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ RF +W + K +K +++ L D+PN +V +AY P ++++
Sbjct: 871 GLHRFADWWRRVQEGKDKEEESNTKTRRQFKKKFKDLYLPSDWPNPAVRDAYYHPAVDSS 930
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD LR F + GW Q +VD+ L+PI++K+++R
Sbjct: 931 EEPFKWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRR 973
>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
Length = 1126
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 46/299 (15%)
Query: 256 QLLLERGKQTRLASTITEQMSRE-----AQELLQLFGVPFIVAPGEAEAQCASLELGTDK 310
QL +E + R AST+ + E QEL QL + D+
Sbjct: 740 QLAMEAEEHARFASTLNSKSQAENAFDYEQELKQLRS-----------------QQKKDR 782
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+ VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG
Sbjct: 783 RDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGG 842
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+YKN F++ +V Y + D+ + L R+KLI + L+GSDYT G+ G+GPVTALEIL
Sbjct: 843 TRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEIL 902
Query: 430 AKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTH------LTRKLRNVKLNDDFP 478
+FS + F++W L K D H + + + L FP
Sbjct: 903 TEFS------------DLEEFRDWWSEIQLGNKIPDDIHAGFRKKFKKNVTKLFLPPGFP 950
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ +V +AYL+P+++ + + WG PDLD +R+F GWS R D+ L+P+++ +++R
Sbjct: 951 DKAVEKAYLEPEVDPDPSEFKWGVPDLDAVRQFLMTTIGWSPERTDEVLVPVIRDVNRR 1009
>gi|302507858|ref|XP_003015890.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
gi|291179458|gb|EFE35245.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
Length = 1120
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 46/299 (15%)
Query: 256 QLLLERGKQTRLASTITEQMSRE-----AQELLQLFGVPFIVAPGEAEAQCASLELGTDK 310
QL +E + R AST+ + E QEL QL + D+
Sbjct: 739 QLAMEAEEHARFASTLNSKSQAENAFDYEQELKQLRS-----------------QQKKDR 781
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+ VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG
Sbjct: 782 RDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGG 841
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+YKN F++ +V Y + D+ + L R+KL+ + L+GSDYT G+ G+GPVTALEIL
Sbjct: 842 TRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLVSFSHLLGSDYTEGIPGIGPVTALEIL 901
Query: 430 AKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTH------LTRKLRNVKLNDDFP 478
+FS + FK+W L K D H + + + L FP
Sbjct: 902 TEFS------------DLEEFKDWWSQVQLGNKIPDDPHAGFRKKFKKNITKLFLPPGFP 949
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ +V +AYL+P+++++ + WG PDLD +R+F GWS R D+ L+P+++ ++R
Sbjct: 950 DKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRR 1008
>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 990
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 140/235 (59%), Gaps = 25/235 (10%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V+ M+ + QELL+ FG+P+I AP EAEAQCA L G++TDDSD +LFG +YK
Sbjct: 725 VTEAMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGDKIYK 784
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD+K +V Y D+ LT+ KLI+LALL+GSDYT G++G+GPV A+EILA+F
Sbjct: 785 NMFDQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEILAEFG- 843
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKP---DTHLTR---------KLRNVKLNDDFPNVSV 482
++ +FK W K K T LT+ K + L D FP+ V
Sbjct: 844 -----------NLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSFPDKVV 892
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+AY+ P+++++ + WG PDLD +R F W+Q VD+ ++P+++ ++++
Sbjct: 893 EQAYISPEVDSDKTEFQWGVPDLDQIRSFLMYNLSWTQTEVDEVMVPLVQDMNKK 947
>gi|426199083|gb|EKV49008.1| hypothetical protein AGABI2DRAFT_217997 [Agaricus bisporus var.
bisporus H97]
Length = 1160
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 135/223 (60%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA L GVITDDSD++LFGA+ VYKN F++ V
Sbjct: 792 MLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNMFNQSKTVEL 851
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R+ L++LA L+GSDYT GL GVGPV A+E+L +F PN+ E
Sbjct: 852 FLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKEF-----PNK----E 902
Query: 446 SMRRFKNWLAK-----------KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ RF +W + K +K +++ L D+PN +V +AY P ++++
Sbjct: 903 GLHRFADWWRRVQEGKDKEEESNTKTRRQFKKKFKDLYLPSDWPNPAVRDAYYHPAVDSS 962
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD LR F + GW Q +VD+ L+PI++K+++R
Sbjct: 963 EEPFKWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRR 1005
>gi|18405624|ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog;
AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
AltName: Full=XPG homolog
gi|13649704|gb|AAK37472.1| UV hypersensitive protein [Arabidopsis thaliana]
gi|332643872|gb|AEE77393.1| DNA repair protein UVH3 [Arabidopsis thaliana]
Length = 1479
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 150/256 (58%), Gaps = 34/256 (13%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E N G++TDDSD++LFGAR+VYK
Sbjct: 921 VSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYK 980
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD + +V Y DI L+R+K+I++A+L+GSDYT G+ G+G V A+E++ F
Sbjct: 981 NIFDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPE 1040
Query: 435 SD----------SPNQNYIVESMRRFKNWLAKK------NK-----PDTHLTRKLRNVKL 473
D SP+ + ++ + + + K+ NK T T +++ + +
Sbjct: 1041 EDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGIISGASTDDTEEIKQIFM 1100
Query: 474 NDD------------FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQN 521
+ FP+ +VI AYL P ++ + +K +WG PDL LR+ KF W+
Sbjct: 1101 DQHRKVSKNWHIPLTFPSEAVISAYLNPQVDLSTEKFSWGKPDLSVLRKLCWEKFNWNGK 1160
Query: 522 RVDQTLIPIMKKISQR 537
+ D+ L+P++K+ +R
Sbjct: 1161 KTDELLLPVLKEYEKR 1176
>gi|443920093|gb|ELU40082.1| flap structure-specific endonuclease [Rhizoctonia solani AG-1 IA]
Length = 1377
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 137/222 (61%), Gaps = 18/222 (8%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
Q LL+LFGVPF+ AP EAEAQCA L +GVITDDSD++LFGA VY+N F++ V
Sbjct: 954 QILLRLFGVPFVNAPMEAEAQCAFLAQHGLVEGVITDDSDVFLFGAGRVYRNMFNQSKTV 1013
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYI 443
+ A D+ L RE LI LA L+GSDYT GL GVGPV A+EI+ +F P +N
Sbjct: 1014 ECFLAADLDRELGLDRETLISLAYLLGSDYTEGLPGVGPVVAMEIMKEF-----PGEN-- 1066
Query: 444 VESMRRFKNW-----LAKKNKPD--THLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
+R F W + K + D T + L ++ L P S EAYL+P ++ + +
Sbjct: 1067 --GLREFCKWWRKVQVGKDVEADLGTTFRKHLGSICLKPLTP--SKREAYLEPTVDESEE 1122
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ WG PDLDGLRRF ++ W +VD+T+IPI+++++QRS
Sbjct: 1123 RFQWGLPDLDGLRRFLGDELSWPTEKVDETIIPIIRRMTQRS 1164
>gi|11994123|dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]
Length = 1522
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 150/256 (58%), Gaps = 34/256 (13%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E N G++TDDSD++LFGAR+VYK
Sbjct: 961 VSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYK 1020
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD + +V Y DI L+R+K+I++A+L+GSDYT G+ G+G V A+E++ F
Sbjct: 1021 NIFDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPE 1080
Query: 435 SD----------SPNQNYIVESMRRFKNWLAKK------NK-----PDTHLTRKLRNVKL 473
D SP+ + ++ + + + K+ NK T T +++ + +
Sbjct: 1081 EDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGIISGASTDDTEEIKQIFM 1140
Query: 474 NDD------------FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQN 521
+ FP+ +VI AYL P ++ + +K +WG PDL LR+ KF W+
Sbjct: 1141 DQHRKVSKNWHIPLTFPSEAVISAYLNPQVDLSTEKFSWGKPDLSVLRKLCWEKFNWNGK 1200
Query: 522 RVDQTLIPIMKKISQR 537
+ D+ L+P++K+ +R
Sbjct: 1201 KTDELLLPVLKEYEKR 1216
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVG 139
MGV GLW+LL G+ V VETL NK LA+G
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIG 30
>gi|295662156|ref|XP_002791632.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279758|gb|EEH35324.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1178
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 141/241 (58%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS M+ E QELL+LFG+P+I AP EAEAQCA L GV+TDDSDI+LF
Sbjct: 836 DRRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLF 895
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ ++L R KLIQ A L+GSDYT G+ GVGPVTALE
Sbjct: 896 GGTRVYKNMFNQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 955
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTH------LTRKLRNVKLNDD 476
IL +FS ++ F++W + + D+H + + L
Sbjct: 956 ILTEFS------------TLEDFRDWWSQVQMGAQLPDDSHSAFRKKFKKNATKLFLPPG 1003
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL+P+++++ WG PDL+ LR+F GW+Q R D+ L+P+++ +++
Sbjct: 1004 FPDSRVDTAYLEPEVDSDPSAFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVIRDMNR 1063
Query: 537 R 537
R
Sbjct: 1064 R 1064
>gi|225558184|gb|EEH06469.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus G186AR]
Length = 1159
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 165/322 (51%), Gaps = 48/322 (14%)
Query: 235 SGFFDYGCDVIKSSTLEKDR--DQLLLERGKQTRLASTITEQMSRE-----AQELLQLFG 287
+ F Y D S E D QL E + R AST+ + E QEL QL
Sbjct: 752 NNFTHYDHDSDDFSDPEDDELIHQLQKEAEEHARFASTLNSKSQAENAFNYEQELKQL-- 809
Query: 288 VPFIVAPGEAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCA 346
+Q D+ VS M+ E QELL+LFG+P+I AP EAEAQCA
Sbjct: 810 ----------RSQQKKARRDADE-----VSHIMISECQELLRLFGLPYITAPMEAEAQCA 854
Query: 347 SLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLA 406
L GV+TDDSDI+LFG VYKN F++ V Y + D+ + L R KLIQ A
Sbjct: 855 ELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFNQAKFVECYISNDLEKEYNLDRNKLIQFA 914
Query: 407 LLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPD 461
L+GSDYT G+ GVGPV+ALEIL +F ++ F++W + K D
Sbjct: 915 HLLGSDYTEGIPGVGPVSALEILTEFP------------TLEDFRDWWSQVQMGAKLPED 962
Query: 462 TH------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANK 515
+H + + + L FP+ V AYL+P ++++ WG PDL+ LR+F +
Sbjct: 963 SHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAFQWGVPDLNALRQFLMST 1022
Query: 516 FGWSQNRVDQTLIPIMKKISQR 537
GWSQ R D+ L+P+++ +++R
Sbjct: 1023 IGWSQERTDEVLVPVIRDMNRR 1044
>gi|432119340|gb|ELK38422.1| DNA repair protein complementing XP-G cells [Myotis davidii]
Length = 1164
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 131/224 (58%), Gaps = 38/224 (16%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 777 FLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 836
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 837 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIATVGCVTAMEILNEFP------ 890
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KNK DT + +KLR ++L FPN +V +AYLKP
Sbjct: 891 -GHGLEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKP-- 947
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
FGW++ + D++L P++K++S
Sbjct: 948 ---------------------VRYFGWNRTKTDESLFPVLKQLS 970
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+PV ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRPVSPETLEGKILAVDISIWLNQALKGVRDRH 46
>gi|240273423|gb|EER36944.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H143]
Length = 1159
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 165/322 (51%), Gaps = 48/322 (14%)
Query: 235 SGFFDYGCDVIKSSTLEKDR--DQLLLERGKQTRLASTITEQMSRE-----AQELLQLFG 287
+ F Y D S E D QL E + R AST+ + E QEL QL
Sbjct: 752 NNFTHYDHDSDDFSDPEDDELIHQLQKEAEEHARFASTLNSKSQAENAFNYEQELKQL-- 809
Query: 288 VPFIVAPGEAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCA 346
+Q D+ VS M+ E QELL+LFG+P+I AP EAEAQCA
Sbjct: 810 ----------RSQQKKARRDADE-----VSHIMVSECQELLRLFGLPYITAPMEAEAQCA 854
Query: 347 SLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLA 406
L GV+TDDSDI+LFG VYKN F++ V Y + D+ + L R KLIQ A
Sbjct: 855 ELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFNQAKFVECYISNDLEKEYNLDRNKLIQFA 914
Query: 407 LLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPD 461
L+GSDYT G+ GVGPV+ALEIL +F ++ F++W + K D
Sbjct: 915 HLLGSDYTEGIPGVGPVSALEILTEFP------------TLEDFRDWWSQVQMGAKLPED 962
Query: 462 TH------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANK 515
+H + + + L FP+ V AYL+P ++++ WG PDL+ LR+F +
Sbjct: 963 SHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAFQWGVPDLNALRQFLMST 1022
Query: 516 FGWSQNRVDQTLIPIMKKISQR 537
GWSQ R D+ L+P+++ +++R
Sbjct: 1023 IGWSQERTDEVLVPVIRDMNRR 1044
>gi|325095909|gb|EGC49219.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H88]
Length = 1159
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 167/322 (51%), Gaps = 48/322 (14%)
Query: 235 SGFFDYGCDVIKSSTLEKDR--DQLLLERGKQTRLASTITEQMSRE-----AQELLQLFG 287
+ F Y D S E D QL E + R AST+ + E QEL QL
Sbjct: 752 NNFTHYDHDSDDFSDPEDDELIHQLQKEAEEHARFASTLNSKSQAENAFNYEQELKQL-- 809
Query: 288 VPFIVAPGEAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCA 346
+Q D+ VS M+ E QELL+LFG+P+I AP EAEAQCA
Sbjct: 810 ----------RSQQKKARRDADE-----VSHIMVSECQELLRLFGLPYITAPMEAEAQCA 854
Query: 347 SLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLA 406
L GV+TDDSDI+LFG VYKN F++ V Y + D+ + L R KLIQ A
Sbjct: 855 ELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFNQAKFVECYISNDLEKEYNLDRNKLIQFA 914
Query: 407 LLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAK----KNKP-D 461
L+GSDYT G+ GVGPV+ALEIL +F ++ F++W ++ N P D
Sbjct: 915 HLLGSDYTEGIPGVGPVSALEILTEFP------------TLEDFRDWWSQVQMGANLPED 962
Query: 462 TH------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANK 515
+H + + + L FP+ V AYL+P ++++ WG PDL+ LR+F +
Sbjct: 963 SHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAFQWGVPDLNALRQFLMST 1022
Query: 516 FGWSQNRVDQTLIPIMKKISQR 537
GWSQ R D+ L+P+++ +++R
Sbjct: 1023 IGWSQERTDEVLVPVIRDMNRR 1044
>gi|367016309|ref|XP_003682653.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
gi|359750316|emb|CCE93442.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
Length = 1012
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 144/242 (59%), Gaps = 25/242 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E Q+LL FG+PFI AP EAEAQCA L G+ITDDSD++LF
Sbjct: 741 DKRDSDEVTTDMIVEVQDLLSRFGIPFITAPMEAEAQCAELLGLKLVDGIITDDSDVFLF 800
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F +K++V Y I+ L R+ +I+LA L+GSDYT G++G+GPV+++E
Sbjct: 801 GGSRVYKNMFHEKNYVEFYDYQSIKQNLGLDRDTMIELAQLLGSDYTNGIKGMGPVSSME 860
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWL------AKKNKPDTHLTRKLRN------VKLND 475
+LA+F ++ +F++W KK + + R LR V L+
Sbjct: 861 VLAEFG------------NLIKFRDWYNEGQFDTKKQQAENKYERDLRKRLVKNEVVLSS 908
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+ V ++YL P+++ + WG PDLD LR+F + GW+Q + D+ L+P+++ I+
Sbjct: 909 DFPSELVRDSYLSPEVDHDKSTFIWGAPDLDMLRQFMRARVGWTQEKSDEILVPLIRDIN 968
Query: 536 QR 537
R
Sbjct: 969 NR 970
>gi|390600384|gb|EIN09779.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 1103
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 135/224 (60%), Gaps = 21/224 (9%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA+L G+ITDDSD++LFG + V KN F++ V
Sbjct: 734 MLRLFGIPYITAPMEAEAQCATLNELGLVDGIITDDSDVFLFGGKRVLKNMFNQSKTVEC 793
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ PD+ L R+ LI+LA L+GSDYT GL GVGPV A+E+L +F D
Sbjct: 794 FLLPDLARELGLDRDTLIRLAYLLGSDYTEGLPGVGPVVAMELLKEFQGED--------- 844
Query: 446 SMRRFKNW-----LAKKNKPDTHLTRKLRN-------VKLNDDFPNVSVIEAYLKPDINT 493
+ +FK+W + + + DT + R + LNDD+PN +V +AY P ++
Sbjct: 845 GLHKFKDWWRKVQMGRDREADTSTKFRKRFKKRFKDVLHLNDDWPNGAVRDAYYHPTVDE 904
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ + WG PDLD LR F ++ GW Q +VD+ L+PI+ K+++R
Sbjct: 905 SEEPFKWGLPDLDALRGFLYDELGWGQTKVDELLLPIIHKVTKR 948
>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 1119
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 46/299 (15%)
Query: 256 QLLLERGKQTRLASTITEQMSRE-----AQELLQLFGVPFIVAPGEAEAQCASLELGTDK 310
QL +E + R AST+ + E QEL QL + D+
Sbjct: 738 QLAMEAEEHARFASTLNSKSQAENAFDYEQELKQLRS-----------------QQKKDR 780
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+ VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG
Sbjct: 781 RDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGG 840
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+YKN F++ +V Y + D+ + L R+KLI + L+GSDYT G+ G+GPVTALEIL
Sbjct: 841 TRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEIL 900
Query: 430 AKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTH------LTRKLRNVKLNDDFP 478
+FS + F++W L K D H + + + L FP
Sbjct: 901 TEFS------------GLEEFRDWWSQVQLGNKIPDDPHARFRKKFKKNITKLFLPPGFP 948
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ +V +AYL+P+++++ + WG PDLD +R+F GWS R D+ L+P+++ ++R
Sbjct: 949 DKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRR 1007
>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
Length = 1119
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 46/299 (15%)
Query: 256 QLLLERGKQTRLASTITEQMSRE-----AQELLQLFGVPFIVAPGEAEAQCASLELGTDK 310
QL +E + R AST+ + E QEL QL + D+
Sbjct: 738 QLAMEAEEHARFASTLNSKSQAENAFDYEQELKQLRS-----------------QQKKDR 780
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+ VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG
Sbjct: 781 RDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGG 840
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+YKN F++ +V Y + D+ + L R+KLI + L+GSDYT G+ G+GPVTALEIL
Sbjct: 841 TRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEIL 900
Query: 430 AKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTH------LTRKLRNVKLNDDFP 478
+FS + F++W L K D H + + + L FP
Sbjct: 901 TEFS------------GLEEFRDWWSQVQLGNKIPDDPHARFRKKFKKNITKLFLPPGFP 948
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ +V +AYL+P+++++ + WG PDLD +R+F GWS R D+ L+P+++ ++R
Sbjct: 949 DKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRR 1007
>gi|225682262|gb|EEH20546.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb03]
Length = 1233
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 141/241 (58%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS M+ E QELL+LFG+P+I AP EAEAQCA L GV+TDDSDI+LF
Sbjct: 891 DRRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLF 950
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ ++L R KLIQ A L+GSDYT G+ GVGPVTALE
Sbjct: 951 GGTRVYKNMFNQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 1010
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----KNKPDTHLTRKLRNVKLN-------DD 476
IL +FS ++ F++W ++ PD + + K N
Sbjct: 1011 ILTEFS------------TLEDFRDWWSQVQMGAKLPDGSHSAFWKKFKKNATKLFLPPG 1058
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL+P+++++ WG PDL+ LR+F GW+Q R D+ L+P+++ +++
Sbjct: 1059 FPDSRVDTAYLEPEVDSDPSAFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVIRDMNR 1118
Query: 537 R 537
R
Sbjct: 1119 R 1119
>gi|226289636|gb|EEH45120.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb18]
Length = 1178
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 141/241 (58%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS M+ E QELL+LFG+P+I AP EAEAQCA L GV+TDDSDI+LF
Sbjct: 836 DRRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLF 895
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ ++L R KLIQ A L+GSDYT G+ GVGPVTALE
Sbjct: 896 GGTRVYKNMFNQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 955
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----KNKPDTHLTRKLRNVKLN-------DD 476
IL +FS ++ F++W ++ PD + + K N
Sbjct: 956 ILTEFS------------TLEDFRDWWSQVQMGAKLPDGSHSAFWKKFKKNATKLFLPPG 1003
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL+P+++++ WG PDL+ LR+F GW+Q R D+ L+P+++ +++
Sbjct: 1004 FPDSRVDTAYLEPEVDSDPSAFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVIRDMNR 1063
Query: 537 R 537
R
Sbjct: 1064 R 1064
>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
Length = 990
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 140/235 (59%), Gaps = 25/235 (10%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V+ M+ + QELL+ FG+P+I AP EAEAQCA L G++TDDSD +LFG +YK
Sbjct: 725 VTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGDKIYK 784
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD+K +V Y D+ LT+ KLI+LALL+GSDYT G++G+GPV A+EILA+F
Sbjct: 785 NMFDQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEILAEFG- 843
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKP---DTHLTR---------KLRNVKLNDDFPNVSV 482
++ +FK W K K T LT+ K + L D FP+ V
Sbjct: 844 -----------NLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSFPDKVV 892
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+AY+ P+++++ + WG PDLD +R F W+Q VD+ ++P+++ ++++
Sbjct: 893 EQAYMSPEVDSDKTEFQWGVPDLDQIRSFLMYNLLWTQTEVDEVMVPLVQDMNKK 947
>gi|299749580|ref|XP_001836208.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
gi|298408502|gb|EAU85580.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
Length = 1200
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 19/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA L GVITDDSD++LFGA V+KN F++ V
Sbjct: 803 MLRLFGIPYITAPMEAEAQCAELTSLGLVDGVITDDSDVFLFGASRVFKNMFNQSKTVEC 862
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R+ LIQLA L+GSDYT GL GVGPV A+E++ +F D
Sbjct: 863 FLLSDLERELGLDRDTLIQLAYLLGSDYTEGLAGVGPVVAMELVREFPGKD--------- 913
Query: 446 SMRRFKNWLAK----------KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNV 495
+ +FK W K K ++ +++ + D+PN +V +AY P ++++
Sbjct: 914 GLWKFKEWWTKVQTGKDGDESNTKFRKMFKKRFKDLYIAQDWPNTAVRDAYYHPTVDSSD 973
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ WG PDLDGLR F ++ GW Q++VD+ L+PI++K+++RS
Sbjct: 974 EPFKWGLPDLDGLRAFFNSELGWPQSKVDELLLPIIQKMNKRS 1016
>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
endonuclease, putative [Candida dubliniensis CD36]
gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
CD36]
Length = 992
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 136/228 (59%), Gaps = 24/228 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ QELL+ FG+P+I AP EAEAQCA L G++TDDSD +LFG +YKN FD+K
Sbjct: 734 DVQELLKRFGIPYITAPMEAEAQCAELFKIGLVDGIVTDDSDCFLFGGDKIYKNMFDQKQ 793
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y D+ LT+ KLI+LALL+GSDYT G++G+GPV A+EILA+F
Sbjct: 794 YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEILAEFG-------- 845
Query: 442 YIVESMRRFKNWLAKKNKP---DTHLTR---------KLRNVKLNDDFPNVSVIEAYLKP 489
++ +FK W K K T LT+ K + L D FP+ V +AY+ P
Sbjct: 846 ----NLEKFKEWFDKHAKTVADKTELTKLQKSLLDRIKKGKLFLPDSFPDKVVEQAYISP 901
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+++++ + WG PDLD +R F WSQ VD+ ++P+++ ++++
Sbjct: 902 EVDSDKTEFQWGVPDLDQIRSFLMYNLSWSQTEVDEVMVPLVQDMNKK 949
>gi|449298336|gb|EMC94351.1| hypothetical protein BAUCODRAFT_73871 [Baudoinia compniacensis UAMH
10762]
Length = 1348
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 134/231 (58%), Gaps = 24/231 (10%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E Q+LL+LFG+P++ AP EAEAQCA L G++TDDSD +LFG +YKN F++
Sbjct: 980 VTECQQLLRLFGLPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDCFLFGGTRIYKNMFNQ 1039
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y + D+ F+LTR+KLI +A L+GSDYT GL VGPVTALEIL +F
Sbjct: 1040 AKFVECYLSSDLEKEFDLTRQKLIAVAHLLGSDYTEGLPSVGPVTALEILGEFV------ 1093
Query: 440 QNYIVESMRRFKNW--------LAKKNKPDTHLTRKLR----NVKLNDDFPNVSVIEAYL 487
S+ FK+W + K D +K R + L FP+ V AY
Sbjct: 1094 ------SLSDFKDWWNGVQMNIIPKDVDKDNAFRKKFRKNATKLFLPPAFPDKRVDVAYE 1147
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
P+++++ Q WG PDLD LR F GWSQ R D+ L+P+++ +++R+
Sbjct: 1148 TPEVDSDPQPFQWGVPDLDALRSFLMATIGWSQERTDEVLVPVIRDMNRRA 1198
>gi|302927330|ref|XP_003054474.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
gi|256735415|gb|EEU48761.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
Length = 1192
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 145/237 (61%), Gaps = 11/237 (4%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 856 DRRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLF 915
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y D+ L+RE+LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 916 GGTRVYKNMFNSNKFVECYLGGDLEKELSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 975
Query: 428 ILAKFSPSDSPNQNYI-----VESMRRFKNWLAKKNKPDTHLTRKLRNVK--LNDDFPNV 480
IL++F P S +++ V+S R K A + P R+ + K L FP+
Sbjct: 976 ILSEF-PGKSGLEDFRDWWKEVQSQSRPKE--ADASSPFRKKFRRSQGTKLFLPPGFPSP 1032
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+V +AYL P+++ + + WG PD++GLR+F GWS+ R D+ L+P++K +++R
Sbjct: 1033 AVFDAYLNPEVDDSNESFQWGVPDVEGLRQFLMATIGWSKERTDEVLVPVIKDMNKR 1089
>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1222
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 142/243 (58%), Gaps = 26/243 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q+LL LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 928 DRRDADEVTQTMIAECQQLLTLFGLPYITAPMEAEAQCAELVNLGLVDGIVTDDSDTFLF 987
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y A D+ F LTREK+I +A L+GSDYT G+ G+GPVTALE
Sbjct: 988 GGTRVYKNMFNAAKFVECYLAQDLTSEFNLTREKMIDIAQLLGSDYTTGIPGIGPVTALE 1047
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVK-----LN 474
IL++F +++ F+ W + K +K R + L
Sbjct: 1048 ILSEF------------QTLEAFRTWWDGVQSGQIKKDEDAKNPFRKKFRKNQGTKLFLP 1095
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+FP+ V +AYL P+++++ + WG PDL LR F +++ GWS R D+ L+P+++ +
Sbjct: 1096 PNFPDPRVTDAYLHPEVDSDPEPFQWGVPDLAALRTFLSSQIGWSWERTDEVLVPVIRDM 1155
Query: 535 SQR 537
++R
Sbjct: 1156 NRR 1158
>gi|365983062|ref|XP_003668364.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
gi|343767131|emb|CCD23121.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
Length = 1021
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 161/293 (54%), Gaps = 39/293 (13%)
Query: 270 TITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL------------ELGTDKKRRPYVS 317
+TE + +E QE + + G+A +SL + DK+ V+
Sbjct: 700 NLTENIRKEQQEFEAFKDLTLL--NGKASGSTSSLIDKAFMEDELYEQQMKDKRDSDEVT 757
Query: 318 RKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 376
M++ Q+LL FG+PFIVAP EAEAQCA L N G++TDDSD++LFG VYKN
Sbjct: 758 PDMVQDVQDLLSRFGIPFIVAPMEAEAQCAELLHLNLVDGIVTDDSDVFLFGGSKVYKNM 817
Query: 377 FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
F +K++V Y + I L R +I++A L+GSDYT G++G+GPV++LEI+A+F
Sbjct: 818 FHEKNYVEFYDSASILRNIGLDRINMIEMAQLLGSDYTNGVKGMGPVSSLEIIAEFG--- 874
Query: 437 SPNQNYIVESMRRFKNWL------AKKNKPDTHLTRKLRN------VKLNDDFPNVSVIE 484
++R+FK W KK + ++ + LR + + +FP+ V +
Sbjct: 875 ---------NLRKFKEWYEEGQFNEKKQENESKFEKDLRKRLVKNEIVFDSNFPSELVKD 925
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
AYL P+++ + K W PDLD LR F K GW Q + D+ LIP+++ I++R
Sbjct: 926 AYLNPEVDHDKTKFIWNFPDLDLLREFLKRKIGWPQEKSDEVLIPLIQDINKR 978
>gi|302674926|ref|XP_003027147.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
gi|300100833|gb|EFI92244.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
Length = 1139
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 19/222 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P++ AP EAEAQCA+L N GVITDDSD++LFGA V+KN F++ V
Sbjct: 769 MLRLFGIPYMTAPMEAEAQCATLVSLNLVDGVITDDSDVFLFGAARVFKNMFNQSKTVEC 828
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ A D++ L R LI+LA L+GSDYT GL GVGPV A+E+L +F D
Sbjct: 829 FLAADLQRELGLDRGVLIRLAYLLGSDYTEGLPGVGPVMAMELLREFPGED--------- 879
Query: 446 SMRRFKNWLAK---------KNKP-DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNV 495
+ RF+ W + N P +K +++ L D+PN +V +AYL P ++ +
Sbjct: 880 GLERFREWWGRVQMGRDGEESNTPFRRRFKKKFKDLYLPPDWPNGAVRDAYLHPTVDESE 939
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLDGLR F + GWSQ++VD+ L+PI+ K+ +R
Sbjct: 940 EPFKWGLPDLDGLREFFNGELGWSQHKVDEILLPIISKMGKR 981
>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
Length = 1120
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 159/299 (53%), Gaps = 46/299 (15%)
Query: 256 QLLLERGKQTRLASTITEQMSRE-----AQELLQLFGVPFIVAPGEAEAQCASLELGTDK 310
QL +E + R AST+ + E QEL QL + D+
Sbjct: 739 QLAMEAEEHARFASTLNSKSQAENAFDYEQELKQLRS-----------------QQKKDR 781
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+ VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG
Sbjct: 782 RDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGG 841
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+YKN F++ +V Y + D+ + L R+KLI + L+GSDYT G+ G+GPVTALEIL
Sbjct: 842 TRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEIL 901
Query: 430 AKFSPSDSPNQNYIVESMRRFKNW-----LAKKNKPDTH------LTRKLRNVKLNDDFP 478
+FS + F++W L K D H + + L FP
Sbjct: 902 TEFS------------DLEEFRDWWSQVQLGNKIPDDPHAGFRKKFKKNTTKLFLPPGFP 949
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ +V +AYL+P+++++ + WG PDLD +R+F GWS R D+ L+P+++ ++R
Sbjct: 950 DKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRR 1008
>gi|451997573|gb|EMD90038.1| hypothetical protein COCHEDRAFT_1106592 [Cochliobolus heterostrophus
C5]
Length = 1297
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 142/243 (58%), Gaps = 26/243 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q+LL LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 930 DRRDADEVTQTMISECQQLLTLFGLPYITAPMEAEAQCAELVNLGLVDGIVTDDSDTFLF 989
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y + D+ F LTR+KLI +A L+GSDYT GL G+GPVTALE
Sbjct: 990 GGTRVYKNMFNAAKFVECYLSSDLTSEFSLTRQKLIDIAQLLGSDYTEGLPGIGPVTALE 1049
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVK-----LN 474
IL++F + + F+ W + K + + ++ R + L
Sbjct: 1050 ILSEF------------QDLTSFRKWWDGVQNGTIKKSDDAQSSFRKRFRKNQATKLFLP 1097
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FP+ V EAYL P+++++ + WG PDL LR + +++ GWS R D+ L+P+++ +
Sbjct: 1098 TSFPDPRVAEAYLHPEVDSSPEPFQWGVPDLAALRAYLSSQIGWSTERTDEVLVPVIRDM 1157
Query: 535 SQR 537
++R
Sbjct: 1158 NRR 1160
>gi|258577255|ref|XP_002542809.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
gi|237903075|gb|EEP77476.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
Length = 1143
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 130/401 (32%), Positives = 197/401 (49%), Gaps = 35/401 (8%)
Query: 155 RKEDNIIDAEEKDILEMIRAEEENEIEFEEEIAGGKEEKTEKIKLTREMLAEQQKILDSL 214
R E + D +K E R+ ++ I E AG ++ IK M + +L+
Sbjct: 650 RSESEVFD--DKQHKEPSRSPAKSNIGLLFESAGSAAVVSDAIKNDASM---ESPVLEQT 704
Query: 215 VKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQ 274
VK+K+ + + DVD++ +G VI E +L E + + Q
Sbjct: 705 VKEKSPTAEFEDVDISRVIGAGVNPSSHPVIPLELAEDTTQELFEEVQFSDPEEAELIHQ 764
Query: 275 MSREAQELLQLFG-VPFIVAPGEAEA---QCASLELGTDKKRRPY--VSRKML-EAQELL 327
++ E +E + + F A+A + L K RR VS M+ E Q+LL
Sbjct: 765 LAAETEEYARFASTLNFKSQAENADAFDRELKQLRAQQKKDRRDADEVSHIMVTECQQLL 824
Query: 328 QLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYT 387
+LFG+P+I AP EAEAQCA L G++TDDSD +LFG VYKN F++ V Y
Sbjct: 825 KLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMFNQAKFVECYL 884
Query: 388 APDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESM 447
D+ + L R+KLI A L+GSDYT G+ G+GPVTALEIL +FS +
Sbjct: 885 VSDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFS------------DL 932
Query: 448 RRFKNWLAKKNK----PDTHLTRKLRNVKLN-------DDFPNVSVIEAYLKPDINTNVQ 496
FK+W ++ PD ++ + K N FP+ V AYL+P+++++
Sbjct: 933 EDFKDWWSQVQMGVSIPDDVHSKFRKKFKKNAAKLFLPPAFPDRRVDAAYLEPEVDSDPS 992
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
WG PDL+ LR F GWS R D+ L+P+++ +++R
Sbjct: 993 AFQWGVPDLEALRHFLMTAVGWSPERTDEVLVPVIRDVNRR 1033
>gi|320167228|gb|EFW44127.1| DNA-repair protein rad13 [Capsaspora owczarzaki ATCC 30864]
Length = 1235
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 137/229 (59%), Gaps = 13/229 (5%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 376
S + + QELL+LFG+P++ AP EAEAQCA+L+L T G IT+DSD++LFGAR VY+NF
Sbjct: 887 SEMIADTQELLRLFGMPYLTAPMEAEAQCAALDLAGITDGTITEDSDVFLFGARRVYRNF 946
Query: 377 FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
F+ + Y + I Y L REKLI LALL+GSDYT G++ +GPV A+EIL F
Sbjct: 947 FNPNKYAEFYASSAIESYLALDREKLIDLALLLGSDYTSGVERIGPVLAMEILGDF---- 1002
Query: 437 SPNQNYIVESMRRFKNWLAKKN-KPDTHLTRKLRN------VKLNDDFPNVSVIEAYLKP 489
P+ + ++K + + + L RKL + D+FP+V V +AY P
Sbjct: 1003 -PSLQEFATFLHQYKFATSDLDLDAVSPLRRKLGKMCRKSPISPPDNFPDVRVRDAYRMP 1061
Query: 490 DINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ N K W P+L LR F + K GWSQ + D+ L+P ++++ QR
Sbjct: 1062 TVEVNPNDKFTWRVPELSVLREFTSRKLGWSQAQCDEFLVPAIRRLHQR 1110
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNII 161
MGV GLW +L+A+G+ V ++TL + VLA+ + + A+ D E N+I
Sbjct: 52 MGVKGLWTILDAAGQSVNLDTLASHVLAIDVSIWLNQHMKAMRD--AEGNVI 101
>gi|440633177|gb|ELR03096.1| hypothetical protein GMDG_05935 [Geomyces destructans 20631-21]
Length = 1232
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 165/335 (49%), Gaps = 43/335 (12%)
Query: 219 AKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSRE 278
A++DD D T + F D L L LE + R AS++ + +
Sbjct: 797 AENDDAFDRQAAHTISDDEFGDLSDPEDEELLA----HLALEAEEHARFASSLNNKAPQV 852
Query: 279 AQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY--VSRKML-EAQELLQLFGVPFI 335
QE + E + L K RR VS M+ E Q LL+LFG+P+I
Sbjct: 853 NQE--------------DYERELKQLRNQQKKDRRDADEVSHIMVTECQALLRLFGLPYI 898
Query: 336 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYF 395
AP EAEAQCA L G+ITDDSD++LFG VYKN F+ V Y A D+
Sbjct: 899 TAPMEAEAQCAELVTLGLVDGIITDDSDVFLFGGTRVYKNMFNSNKFVECYLASDLEKEL 958
Query: 396 ELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL- 454
L R+KLI+ A L+GSDYT GL G+GPVTALEI+++F SD ++ FK+W
Sbjct: 959 SLPRDKLIEFAHLLGSDYTEGLPGIGPVTALEIISEFPSSD---------GLQEFKDWWY 1009
Query: 455 -------AKKNKPDTHLTRKLRNVK-----LNDDFPNVSVIEAYLKPDINTNVQKLAWGT 502
K+ + RK R + L FP+ +V EAYL D+++ WG
Sbjct: 1010 DVQHNQRPKEADSTSSFRRKFRKSQASKLFLPPAFPSKAVTEAYLHADVDSTPDPFQWGV 1069
Query: 503 PDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
PDLD LR F GW+ D+ L+P+++ +++R
Sbjct: 1070 PDLDNLRSFLMATIGWTPECTDEVLVPVIQDMNRR 1104
>gi|115390695|ref|XP_001212852.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
gi|114193776|gb|EAU35476.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
Length = 1131
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 140/241 (58%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL LFG+P+I AP EAEAQCA L G+ITDDSDI+LF
Sbjct: 815 DRRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLF 874
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ V Y D+ + L R KLI A L+GSDYT G+ GVGPVTALE
Sbjct: 875 GGTRVYKNMFNQSKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGVGPVTALE 934
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----KNKPD-TH------LTRKLRNVKLNDD 476
IL +FS S+ F++W ++ N D +H ++ + L
Sbjct: 935 ILTEFS------------SLEEFRDWWSQVQMGMNANDGSHAAFYKKFKKQASKIFLPPA 982
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL+P+++++ WG PDL GLR + GWSQ R D+ L+P+++ +++
Sbjct: 983 FPDPRVDVAYLEPEVDSDPSPFQWGVPDLHGLRNYLMATIGWSQERTDEVLVPVIRDMNR 1042
Query: 537 R 537
R
Sbjct: 1043 R 1043
>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
Length = 1279
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 142/243 (58%), Gaps = 26/243 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 914 DRRDADEVTQSMITECQHLLTLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLF 973
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y A D+ F LTR+K+I +A L+GSDYT G+ G+GPVTALE
Sbjct: 974 GGTRVYKNMFNAAKFVECYLANDLVSEFSLTRDKMIAIAQLLGSDYTTGIPGIGPVTALE 1033
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVK-----LN 474
+LA+F ++ FK+W + K ++ R+ R + L
Sbjct: 1034 LLAEFP------------DLQDFKDWWTGVQNNTIPKDADKNSAFRRRFRRGQATKLFLP 1081
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FP+ V +AYL P+++++ + WG PDL LR F +++ GWS R D+ L+P+++ +
Sbjct: 1082 PGFPDQRVADAYLHPEVDSDPEPFQWGVPDLAALRTFLSSQIGWSWERTDEVLVPVIRDM 1141
Query: 535 SQR 537
++R
Sbjct: 1142 NRR 1144
>gi|388583607|gb|EIM23908.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 1046
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 138/227 (60%), Gaps = 20/227 (8%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E Q+LL+ FG+P+I AP EAEAQCA L N VITDDSD++LFGA VYKN F+ +
Sbjct: 724 EIQKLLRAFGIPYITAPMEAEAQCAKLAQMNLVDAVITDDSDVFLFGAPIVYKNMFNDRQ 783
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y + DI L+R++LI+LA ++GSDYT G GVGPV A+E+LA F+ ++N
Sbjct: 784 FVECYVSSDIERDLSLSRDRLIELAHILGSDYTNGFPGVGPVMAMELLADFA-----HEN 838
Query: 442 YIVESMRRFKNWLAK-KNKPDT----------HLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
+V F++W K +N DT + +K +N+ L+ +FP+ V AY
Sbjct: 839 TLVG----FRDWWIKVQNGKDTSNDTSTRFRKNFKKKSKNLFLDKEFPDPQVKGAYYGAK 894
Query: 491 INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+++ ++ WG P+LD LR + N GW ++VD T+IP+MK + +
Sbjct: 895 TDSSNEEFVWGIPNLDELREYLYNYLGWPAHKVDDTIIPVMKHMRNK 941
>gi|5020|emb|CAA47291.1| excision repair protein [Schizosaccharomyces pombe]
Length = 1113
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 145/243 (59%), Gaps = 21/243 (8%)
Query: 307 GTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIW 365
G++K+ V++ M+ E QELL+LFG+P+IVAP EAEAQC+ L G++TDDSD++
Sbjct: 744 GSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVF 803
Query: 366 LFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
LFG VY+N F++ V Y D++ F + + LI+LA L+GSDYT GL VGPV A
Sbjct: 804 LFGGTRVYRNMFNQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLA 863
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWL-------AKKNKPDTHLTRKLR----NVKLN 474
LEIL +F P D+ + FK W A KN +T + +++ + L
Sbjct: 864 LEILHEF-PGDT--------GLFEFKKWFQRLSTGHASKNDVNTPVKKRINKLVGKIILP 914
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+FPN V EAYL P ++ + Q WG PDLD LR+F GWS+ R ++ L+P+++ +
Sbjct: 915 SEFPNPLVDEAYLHPAVDDSKQSFQWGIPDLDELRQFLMATVGWSKQRTNEVLLPVIQDM 974
Query: 535 SQR 537
++
Sbjct: 975 HKK 977
>gi|451852103|gb|EMD65398.1| hypothetical protein COCSADRAFT_114116, partial [Cochliobolus sativus
ND90Pr]
Length = 1213
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 142/243 (58%), Gaps = 26/243 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q+LL LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 931 DRRDADEVTQTMISECQQLLALFGLPYITAPMEAEAQCAELVNLGLVDGIVTDDSDTFLF 990
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y + D+ F LTR+KLI +A L+GSDYT G+ G+GPVTALE
Sbjct: 991 GGTRVYKNMFNAAKFVECYLSSDLTSEFSLTRQKLIDIAQLLGSDYTEGIPGIGPVTALE 1050
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVK-----LN 474
IL++F + + F+ W + K + + R+ R + L
Sbjct: 1051 ILSEF------------QDLTAFRKWWDGVQNGSIKKSDDAQSSFRRRFRKNQATKLFLP 1098
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
FP+ V +AYL P+++++ + WG PDL LR + +++ GWS R D+ L+P+++ +
Sbjct: 1099 ASFPDPRVADAYLNPEVDSSPEPFQWGVPDLAALRAYLSSQIGWSTERTDEVLVPVIRDM 1158
Query: 535 SQR 537
++R
Sbjct: 1159 NRR 1161
>gi|366994113|ref|XP_003676821.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
gi|342302688|emb|CCC70465.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
Length = 1000
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 154/272 (56%), Gaps = 34/272 (12%)
Query: 285 LFGVPFIVAPGEAEAQCASLE------LGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVA 337
LF P I G + A+ A LE +K+ V+ +M++ QELL FGVP+I A
Sbjct: 702 LFNNPSI---GTSSAENAFLEDELYKQQVKEKRDSDEVTPEMIQDVQELLSRFGVPYITA 758
Query: 338 PGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFEL 397
P EAEAQCA L GV+TDDSD++LFG +YKN F +K++V Y + I L
Sbjct: 759 PMEAEAQCAELLQLKLVDGVVTDDSDVFLFGGSKIYKNMFHEKNYVEFYDSESILRNLGL 818
Query: 398 TREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL--- 454
RE +I+LA L+GSDYT G++G+GPV++LE+LA+F +++ F+NW
Sbjct: 819 DRENMIELAELLGSDYTNGIKGMGPVSSLEVLAEFG------------NLKEFRNWYNEG 866
Query: 455 ---AKKNKPDTHLTRKLR------NVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDL 505
KK + +T + LR + L+ +FP+ V +AY+ P+++ + WG PDL
Sbjct: 867 QFDKKKQEGETKFQKDLRKRLVNNKIVLDSNFPSELVHDAYINPEVDHDTTAFKWGLPDL 926
Query: 506 DGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
D LR F GW Q + D+ LIP+++ I+ R
Sbjct: 927 DLLRLFLKTHAGWPQEKSDEVLIPLIRTINNR 958
>gi|346321714|gb|EGX91313.1| DNA excision repair protein Rad2 [Cordyceps militaris CM01]
Length = 1162
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 25/245 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 860 DRRDADEVTQVMVSECQSLLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLF 919
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y ++ L+R++LI LA L+GSDYT GL GVGPVTA+E
Sbjct: 920 GGTRVYKNMFNSNKFVECYIGSELEKDLSLSRQQLISLAHLLGSDYTEGLPGVGPVTAVE 979
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWL----------AKKNKPDTHLTRKLRNVK----- 472
IL++F D + F+ W K + +K R +
Sbjct: 980 ILSEFPGRD---------GLGHFRAWWDAVQSSQPPRPKAEDASSPFRKKFRRAQAAKLF 1030
Query: 473 LNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L FPN +V +AYL P ++ + + WG PD++GLRRF GWS+ R D+ L+P+++
Sbjct: 1031 LPPGFPNHAVDDAYLHPVVDGSTEPFQWGVPDVEGLRRFLMATIGWSKERTDEVLVPVIR 1090
Query: 533 KISQR 537
+++R
Sbjct: 1091 DMNKR 1095
>gi|453088882|gb|EMF16922.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 1387
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P++ AP EAEAQCA L G++TDDSD +LF
Sbjct: 1025 DRRDADEVTQTMIQECQALLRLFGLPYVTAPMEAEAQCAELVHLGLVDGIVTDDSDCFLF 1084
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F++ V Y D+ F LTR+KLI +A L+GSDYT G+ GVGPVTALE
Sbjct: 1085 GGTRIYKNMFNQAKFVECYLTSDLEKEFGLTRQKLIAVANLLGSDYTEGVPGVGPVTALE 1144
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
I+++F + + + M N R + L FP+ V AYL
Sbjct: 1145 IISEFPDLEEFKEWWTAVQMNERPKSEDAGNSFRKKFRRNASKLFLPHGFPDKRVEMAYL 1204
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+P+++ + Q WG PDLD LR F GW+Q R D+ L+P++K +++R
Sbjct: 1205 EPEVDADSQAFQWGVPDLDKLRSFLMATIGWTQERTDEVLVPVIKDMNRR 1254
>gi|297600506|ref|NP_001049313.2| Os03g0205400 [Oryza sativa Japonica Group]
gi|255674294|dbj|BAF11227.2| Os03g0205400 [Oryza sativa Japonica Group]
Length = 1470
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 144/280 (51%), Gaps = 70/280 (25%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E+ N GV+TDDSD++LFGAR VYK
Sbjct: 852 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYK 911
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD + +V Y DI LTRE+LI++A+L+GSDYT G+ G+G V A+E+ F
Sbjct: 912 NIFDDRKYVETYLMKDIESELGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVAHAFPE 971
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL-------------------------- 468
D +++F+ W+ PD L KL
Sbjct: 972 ED---------GLQKFREWV---ESPDPTLLGKLGMESGSSSKKKKSGRNHSDGKGNSLE 1019
Query: 469 ---------------------------RNVKLN----DDFPNVSVIEAYLKPDINTNVQK 497
RNV N FP+ +VI AY+ P ++ + +
Sbjct: 1020 PEYAKGSDDSQSSNETQRIKEIFMSKHRNVSKNWHIPSTFPSEAVINAYISPQVDDSTEP 1079
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+WG PD LR+ +FGWS+ + D+ LIP++++ ++
Sbjct: 1080 FSWGRPDSGLLRKLCWERFGWSKEKADELLIPVLREYNKH 1119
>gi|358060342|dbj|GAA93747.1| hypothetical protein E5Q_00393 [Mixia osmundae IAM 14324]
Length = 1209
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 150/255 (58%), Gaps = 21/255 (8%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EAE + + TD++ ++++M E + +L+LFG+P++ AP EAEAQCA L +
Sbjct: 795 EAEIKVLGQQQKTDRRNADEITQQMAKEIRVMLRLFGIPYVDAPMEAEAQCAQLWMAGLV 854
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
G+ITDDSD++LFG V+KN F++ +V + DI L R+KL +LA +GSDY
Sbjct: 855 DGIITDDSDVFLFGGGRVFKNMFNQNKYVECFLLSDIERELSLDRDKLCKLAYFLGSDYV 914
Query: 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPD-------THLTRK 467
GL VGPV +E++ +F P +VE F+ W K K T R+
Sbjct: 915 EGLPKVGPVLGMELMREF-----PGPAGLVE----FRRWWIKVQKGQDGEADLRTAFRRR 965
Query: 468 ----LRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
++ + L++ +PN +V++AYL PD+ T+ ++ WG PDLDGLR F + GW+ +V
Sbjct: 966 FKKSMKTLVLDESWPNPAVMDAYLNPDVETSSERFTWGLPDLDGLRHFLMDSLGWAAPKV 1025
Query: 524 DQTLIPIMKKISQRS 538
+ L+P++K++S R+
Sbjct: 1026 EDLLLPLIKRMSDRN 1040
>gi|402083876|gb|EJT78894.1| DNA-repair protein rad13 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 140/232 (60%), Gaps = 12/232 (5%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS+ M+ E Q+LL+LFG+P+I AP EAEAQCA L G++TDDSD +LFG VYK
Sbjct: 889 VSQVMVAECQQLLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFGGTRVYK 948
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F+ V Y + D+ L R +LI LA L+GSDYT GL G+GPVTA+EIL++F
Sbjct: 949 NMFNGNKFVECYLSSDLEGDLSLGRPQLIALAQLLGSDYTEGLPGIGPVTAVEILSEFPG 1008
Query: 435 SDSPNQN----YIVESMRRFKNWLAKKNKPDTHLTRKLRNVK-----LNDDFPNVSVIEA 485
D Q + V+S+ A+ + + RK R + L FP+ +V EA
Sbjct: 1009 EDGLKQFAEWWHDVQSVTHLNPRDAEPER--STFRRKFRKSQGKRLFLPPGFPSPAVPEA 1066
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
Y++P+++++ Q WG PDL GLR F + GW + R D+ L+P+++ +++R
Sbjct: 1067 YMQPEVDSDPQPFQWGAPDLRGLRTFLMSTVGWGEERTDEILVPVIRDMNKR 1118
>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
Length = 1019
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 141/236 (59%), Gaps = 26/236 (11%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V+ M+ + QELL+ FG+P+I AP EAEAQCA L G++TDDSD +LFG +YK
Sbjct: 757 VTETMIRDVQELLKRFGIPYITAPMEAEAQCAELFRMGLVDGIVTDDSDCFLFGGSRIYK 816
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F++K +V Y A DI+ L ++KLI+LA+L+GSDYT G++G+GPV A+EILA+F
Sbjct: 817 NMFNQKQYVECYIAEDIKNKIGLDQDKLIELAMLLGSDYTEGIKGIGPVMAMEILAEFG- 875
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKP-----------DTHLTRKLRNVK--LNDDFPNVS 481
++ FK W + K + L +++N K L D FP+
Sbjct: 876 -----------TLSNFKLWFDRHAKSAERPQQEYTPLEKKLLTRIKNGKLFLPDGFPSSV 924
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V +AY +P+++ + WGTP LD +R F WSQ RVD+ ++P+++ ++++
Sbjct: 925 VRDAYKRPEVDRDDSAFKWGTPSLDQIRSFLMYNVQWSQARVDEVMVPLIRDMNRK 980
>gi|345571348|gb|EGX54162.1| hypothetical protein AOL_s00004g195 [Arthrobotrys oligospora ATCC
24927]
Length = 1248
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 141/241 (58%), Gaps = 20/241 (8%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q+LLQ+FG+P+I AP EAEAQCA L G++TDDSDI+LF
Sbjct: 859 DRRDADEVTKIMITECQQLLQMFGIPYITAPMEAEAQCAELVNLGLVDGIVTDDSDIFLF 918
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F++ +V Y A D+ + L R+K+I+LA L+GSDYT GL GVGPVTALE
Sbjct: 919 GGTRVYKNMFNQAKYVECYLASDLENEYSLDRKKMIRLAHLLGSDYTEGLVGVGPVTALE 978
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK-----------KNKPDTHLTRKLRNVKLNDD 476
+LA F D +++ FK W + K+K L + + L
Sbjct: 979 VLANFGGGD--------DALHDFKAWWTRIQSGFRDPADDKSKLKKSLKKLEDKLFLPPS 1030
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL P+++ + WG PDL GLR F GW+ R D+ L+P+++ +++
Sbjct: 1031 FPDDQVDMAYLNPEVDKDSTPFEWGVPDLHGLRTFLMATIGWTSERTDEVLVPVIRDMNR 1090
Query: 537 R 537
+
Sbjct: 1091 K 1091
>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
Length = 1293
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 142/243 (58%), Gaps = 26/243 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q+LL LFG+P++ AP EAEAQCA L G++TDDSD +LF
Sbjct: 930 DRRDADEVTQTMIAECQQLLTLFGLPYVTAPMEAEAQCAELVNLGLVDGIVTDDSDTFLF 989
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G VYKN F+ V Y A D+ F LTREK+I +A L+GSDYT G+ G+GPVTALE
Sbjct: 990 GGTRVYKNMFNAAKFVECYLAQDLASEFSLTREKMIAIAQLLGSDYTTGIPGIGPVTALE 1049
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLRNVK-----LN 474
IL++F +++ F+ W + K ++ R + L
Sbjct: 1050 ILSEF------------QTLEAFRAWWDGVQSGQIRKDEDAKNPFRKRFRKNQGTKLFLP 1097
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+FP+ V EAYL P+++++ + WG PDL LR F +++ GWS + D+ L+P+++ +
Sbjct: 1098 PNFPDPRVAEAYLHPEVDSDPEPFQWGVPDLASLRTFLSSQIGWSWEKTDEVLVPVIRDM 1157
Query: 535 SQR 537
++R
Sbjct: 1158 NRR 1160
>gi|449676998|ref|XP_002156033.2| PREDICTED: DNA repair protein complementing XP-G cells-like,
partial [Hydra magnipapillata]
Length = 431
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 137/221 (61%), Gaps = 10/221 (4%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ Q+LLQLFG+P++V+P EAEAQCA+L L T G ITDDSDI+LFGA VYKN F+K
Sbjct: 101 DVQDLLQLFGIPYLVSPMEAEAQCAALNLLKLTNGTITDDSDIFLFGAENVYKNIFNKDK 160
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
Y++ D+ LTREKLI +A L GSDYT GL GVG +TA+EIL F+ +
Sbjct: 161 IPECYSSKDLETLLYLTREKLIAVAFLTGSDYTEGLPGVGGITAMEILQAFAKKTAE--- 217
Query: 442 YIVESMRRFKNWL----AKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
E++ F+ W+ NK L KL + +F + V EAYL P ++ + +K
Sbjct: 218 ---ETLANFRAWVMSPNVTGNKVLDRLKAKLALDGIPSNFNSNEVWEAYLNPIVDQSKEK 274
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
WG PD++ +++FA++K WS + +TL P+++K +++
Sbjct: 275 FEWGNPDIESIKQFASDKMAWSFSNTLETLKPLLEKWKEKA 315
>gi|320033898|gb|EFW15844.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
Length = 1143
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL+LFG+P++ AP EAEAQCA L G++TDDSDI+LF
Sbjct: 805 DRRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLF 864
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F++ V Y A D+ + L R+KLI A L+GSDYT G+ G+GPVTALE
Sbjct: 865 GGTRIYKNMFNQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 924
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKN-----KPDTH------LTRKLRNVKLNDD 476
IL +F + F++W +K DTH + + L
Sbjct: 925 ILTEFP------------GLEEFRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPA 972
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL+P+++ + WG PDL+ LR+F + GWS R D+ L+P+++ +++
Sbjct: 973 FPDKRVDIAYLEPEVDPDPSAFQWGVPDLEALRQFLMSTVGWSSERTDEVLVPVIRDVNR 1032
Query: 537 R 537
R
Sbjct: 1033 R 1033
>gi|303310363|ref|XP_003065194.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240104854|gb|EER23049.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
delta SOWgp]
Length = 1143
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL+LFG+P++ AP EAEAQCA L G++TDDSDI+LF
Sbjct: 805 DRRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLF 864
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F++ V Y A D+ + L R+KLI A L+GSDYT G+ G+GPVTALE
Sbjct: 865 GGTRIYKNMFNQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 924
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKN-----KPDTH------LTRKLRNVKLNDD 476
IL +F + F++W +K DTH + + L
Sbjct: 925 ILTEFP------------GLEEFRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPA 972
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL+P+++ + WG PDL+ LR+F + GWS R D+ L+P+++ +++
Sbjct: 973 FPDKRVDIAYLEPEVDPDPSAFQWGVPDLEALRQFLMSTVGWSSERTDEVLVPVIRDVNR 1032
Query: 537 R 537
R
Sbjct: 1033 R 1033
>gi|45198651|ref|NP_985680.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|44984661|gb|AAS53504.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|374108910|gb|AEY97816.1| FAFR133Cp [Ashbya gossypii FDAG1]
Length = 970
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 143/232 (61%), Gaps = 5/232 (2%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ +M+ + Q+LL +FG+P++ AP EAEAQCA L G+ITDDSD++LF
Sbjct: 698 DKRDADEVTPEMIRDIQQLLSIFGIPYLTAPMEAEAQCAELLRLKLIDGIITDDSDVFLF 757
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G V+KN F +K++V Y I L R K I LA L+GSDYT G++G+GPV+ +E
Sbjct: 758 GGSKVFKNMFQEKNYVEYYNTETISAELGLDRLKFIALAQLMGSDYTNGIKGIGPVSGIE 817
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL--RNVKLNDDFPNVSVIEA 485
ILA ++ + Y R K+ L K++ +L +KL V L DDFP+ +V +A
Sbjct: 818 ILANYNTLEEFRTWYNEGQFR--KSLLDKESLFQKNLRKKLTKSGVVLGDDFPSAAVSDA 875
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
YL P+++ + K WG P+LD LR F + GW + D+ LIP+++++++R
Sbjct: 876 YLNPEVDHDTTKFVWGLPELDSLRTFLGSTLGWPTEKADEVLIPLIRELNKR 927
>gi|409048860|gb|EKM58338.1| hypothetical protein PHACADRAFT_193460 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1225
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 140/234 (59%), Gaps = 20/234 (8%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+S+ M A+ +L+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG V KN
Sbjct: 838 ISQVMHGAEMMLRLFGIPYITAPMEAEAQCAELLALGLVDGIITDDSDVFLFGGARVLKN 897
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F++ V + D+ L REKLI+LA L+GSDYT GL GVGPV A+E+L +FS S
Sbjct: 898 MFNQSKTVECFLLSDLGRELGLEREKLIRLAYLLGSDYTEGLPGVGPVVAMELLTEFSGS 957
Query: 436 DSPNQNYIVESMRRFKNWLAK-----------KNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
D + +F+ W K K+K ++ + + L +D+PN +V +
Sbjct: 958 D---------GLHKFREWWRKVQSGRDTLEDNKSKFRKRFKKRFKELYLPEDWPNPTVRD 1008
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
AY P ++++ + WG PDLD LR+F + GW+Q +VD L+P++ K+ +R+
Sbjct: 1009 AYYHPTVDSSEEPFKWGLPDLDALRQFFNAELGWAQEKVDDLLLPVIHKMGKRN 1062
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV LW LLE G+PVP+ET+E K +A+
Sbjct: 1 MGVKSLWSLLEPVGRPVPLETMEGKAMAI 29
>gi|402224833|gb|EJU04895.1| hypothetical protein DACRYDRAFT_104789 [Dacryopinax sp. DJM-731 SS1]
Length = 1334
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 139/229 (60%), Gaps = 20/229 (8%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ + Q +L+LFG+P+ VAP EAEAQCA L +G+ITDDSD++LFG V+KN F++
Sbjct: 973 ITQIQNMLRLFGIPYTVAPMEAEAQCAELVQLGLVEGIITDDSDVFLFGGLRVFKNMFNQ 1032
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V + D+ L R+KLI+LA L+GSDY GL VGPV A+E+L +F D
Sbjct: 1033 SKTVECFLLSDLGRELSLDRDKLIRLAYLLGSDYVDGLPKVGPVVAMELLREFPGED--- 1089
Query: 440 QNYIVESMRRFKNWLAK----KNKPDTHLT-------RKLRNVKLNDDFPNVSVIEAYLK 488
+ +FK W K K+KP + T ++ +++ L D+PN +V +AY
Sbjct: 1090 ------GLHKFKEWWVKVQSGKDKPADNATPFRRKFKKRYKDLYLPVDWPNSNVRDAYSH 1143
Query: 489 PDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P ++ + + WG PDLD +R F ++ GW+ ++VD+TL+PI++K+ QR
Sbjct: 1144 PTVDESTEPFKWGLPDLDAMRVFLRDELGWNASKVDETLLPIIRKVGQR 1192
>gi|119178413|ref|XP_001240880.1| hypothetical protein CIMG_08043 [Coccidioides immitis RS]
gi|392867161|gb|EAS29637.2| DNA excision repair protein (rad2) [Coccidioides immitis RS]
Length = 1142
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 24/241 (9%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ VS+ M+ E Q+LL+LFG+P++ AP EAEAQCA L G++TDDSDI+LF
Sbjct: 804 DRRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLF 863
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F++ V Y A D+ + L R+KLI A L+GSDYT G+ G+GPVTALE
Sbjct: 864 GGTRIYKNMFNQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 923
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKN-----KPDTH------LTRKLRNVKLNDD 476
IL +F + F++W +K DTH + + L
Sbjct: 924 ILTEFP------------GLEEFRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPA 971
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V AYL+P+++ + WG PDL+ LR+F + GWS R D+ L+P+++ +++
Sbjct: 972 FPDKRVDIAYLEPEVDPDPSAFQWGVPDLEALRQFLMSTVGWSPERTDEVLVPVIRDVNR 1031
Query: 537 R 537
R
Sbjct: 1032 R 1032
>gi|19112887|ref|NP_596095.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe 972h-]
gi|13432230|sp|P28706.2|RAD13_SCHPO RecName: Full=DNA repair protein rad13
gi|3130034|emb|CAA19011.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe]
Length = 1112
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 144/242 (59%), Gaps = 21/242 (8%)
Query: 308 TDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
++K+ V++ M+ E QELL+LFG+P+IVAP EAEAQC+ L G++TDDSD++L
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFL 803
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
FG VY+N F++ V Y D++ F + + LI+LA L+GSDYT GL VGPV AL
Sbjct: 804 FGGTRVYRNMFNQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLAL 863
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWL-------AKKNKPDTHLTRKLR----NVKLND 475
EIL +F P D+ + FK W A KN +T + +++ + L
Sbjct: 864 EILHEF-PGDT--------GLFEFKKWFQRLSTGHASKNDVNTPVKKRINKLVGKIILPS 914
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+FPN V EAYL P ++ + Q WG PDLD LR+F GWS+ R ++ L+P+++ +
Sbjct: 915 EFPNPLVDEAYLHPAVDDSKQSFQWGIPDLDELRQFLMATVGWSKQRTNEVLLPVIQDMH 974
Query: 536 QR 537
++
Sbjct: 975 KK 976
>gi|367004070|ref|XP_003686768.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
gi|357525070|emb|CCE64334.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
Length = 1051
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 139/233 (59%), Gaps = 25/233 (10%)
Query: 316 VSRKMLEA-QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V++ M+++ QELL FG+P+IVAP EAEAQCA L G+ITDDSD++LFG VYK
Sbjct: 786 VTQDMIKSVQELLTRFGIPYIVAPMEAEAQCAELLKLKLVDGIITDDSDVFLFGGSKVYK 845
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F +K++V Y + L R LI LALL+GSDYT G++G+GPV+ +EI+A+F
Sbjct: 846 NMFHEKNYVEFYDQDKLTVQLGLERSNLIDLALLLGSDYTSGIKGIGPVSGIEIIAEFG- 904
Query: 435 SDSPNQNYIVESMRRFKNW-----LAKKN-KPDTHLTRKLRN------VKLNDDFPNVSV 482
S+ F++W K N K ++ + LR + L+ +FP+ +V
Sbjct: 905 -----------SLENFRDWYMDGQFDKNNQKTESKFQKDLRKKLVKNEIILDSNFPSAAV 953
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
AYL P+++++ WG PDLD LR F + W+Q + D+ LIP++K I+
Sbjct: 954 RNAYLYPEVDSDKTNFTWGVPDLDMLRTFMLKEVRWTQEKSDEVLIPLIKDIN 1006
>gi|452847295|gb|EME49227.1| hypothetical protein DOTSEDRAFT_68105 [Dothistroma septosporum NZE10]
Length = 1395
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 139/243 (57%), Gaps = 25/243 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
D++ V++ M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSD +LF
Sbjct: 1012 DRRDADEVTQIMIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLF 1071
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F++ V Y D+ F+LTR+KLI +A L+GSDYT G+ G+GPVTALE
Sbjct: 1072 GGTRIYKNMFNQAKFVECYLTSDLEKEFDLTRDKLIAVAHLLGSDYTDGIPGIGPVTALE 1131
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW--------LAKKNKPDTHLTRKLR----NVKLND 475
I+++F S+ +FK W + K+ +K R + L
Sbjct: 1132 IISEFG------------SLEKFKEWWTAVQMNQIPKEADAKIPFRKKFRKNATKLFLPP 1179
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
FP+ V AY +PD++ + WG PDL LR F GW++ R D+ L+P++K ++
Sbjct: 1180 AFPDARVELAYQQPDVDPTQEAFQWGVPDLAALRSFLMATIGWNEERTDEVLVPVIKDMN 1239
Query: 536 QRS 538
+R+
Sbjct: 1240 RRT 1242
>gi|389749913|gb|EIM91084.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 1350
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 138/223 (61%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA+L +G+ITDDSD++LFG V+KN F++ V
Sbjct: 913 MLRLFGIPYITAPMEAEAQCATLVQLGLVEGIITDDSDVFLFGGLRVFKNMFNQSKTVEC 972
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R KL+QLA L+GSDYT GL GVGPV A+E+L +F D
Sbjct: 973 FLLSDLARELGLERNKLVQLAYLLGSDYTEGLPGVGPVVAMELLKEFHGDD--------- 1023
Query: 446 SMRRFKNWLAK----KNKPD-------THLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
++ F+ W K +++P+ ++ +++ L DD+PN +V EAY P ++ +
Sbjct: 1024 ALSDFREWWVKVQSGRDRPEESKSKFKKRFKKRFKDLYLPDDWPNAAVKEAYYHPTVDDS 1083
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLDGLR ++ GWS ++V++ L+PI++K+++R
Sbjct: 1084 EEPFKWGLPDLDGLRSLFQDELGWSSSKVEELLLPIIQKMNKR 1126
>gi|353238841|emb|CCA70774.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Piriformospora indica DSM 11827]
Length = 1153
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 137/223 (61%), Gaps = 16/223 (7%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+LFG+P+I AP EAEAQCA L +GVITDDSD++LFGA V+KN F++ V
Sbjct: 786 LLRLFGIPYITAPMEAEAQCAKLLSLGLVEGVITDDSDVFLFGATRVFKNMFNQSKTVEC 845
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ A D++ L +EKLI+LA L+GSDY GL+GVGPV A+EIL +F + +
Sbjct: 846 FLAADLQRELGLDQEKLIRLAYLLGSDYVDGLEGVGPVVAMEILNEFETAGKQE-----D 900
Query: 446 SMRRFKNWLAK-KNKPDTH----------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
S+ RFK W + ++ DT +K +N+ L D+PN +V +AYL P ++ +
Sbjct: 901 SLLRFKEWWRRVQSGQDTENDTGTEFRKRFKKKFKNLHLAGDWPNPAVRDAYLHPTVDES 960
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD LR F + W Q + D+ L+PI++K+ +R
Sbjct: 961 EEAFKWGLPDLDALRTFLHEELHWVQAKTDELLLPIIRKMGER 1003
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV LWKLL G+PV +ET+E K LA+
Sbjct: 1 MGVKQLWKLLSPVGRPVLLETMEGKALAI 29
>gi|301121670|ref|XP_002908562.1| DNA repair protein, putative [Phytophthora infestans T30-4]
gi|262103593|gb|EEY61645.1| DNA repair protein, putative [Phytophthora infestans T30-4]
Length = 483
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 135/241 (56%), Gaps = 37/241 (15%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E LL+LFGVPF+V+P EAEAQCA+LE GVITDDSDI+ FG + VYKN F
Sbjct: 196 VAEVMSLLRLFGVPFLVSPMEAEAQCAALEQLGLVDGVITDDSDIFPFGGQRVYKNIFHH 255
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+ V ++A DI +RE++I LALL+GSDYT G++G+G V A EI A +
Sbjct: 256 QKFVEAFSARDIEQELGFSREQIIALALLLGSDYTDGVRGIGIVNATEIAAAYPK----- 310
Query: 440 QNYIVESMRRFKNWL--------AKKNKPD-------------------THLTRKLRNVK 472
+E +R FK+W+ A++ K D +H T + R +
Sbjct: 311 ----IEGLREFKDWVGEFNVAEEAQRGKEDESGGDSDSEDETVRERFQRSHATAR-RKWE 365
Query: 473 LNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L D+FP+ V++AY+ P ++ + + +W PD+ LR + A FGW Q + D L P+ +
Sbjct: 366 LGDEFPSKQVVQAYMSPQVDRSDARFSWSAPDVASLRNYCAKAFGWDQQKSDGVLKPLEE 425
Query: 533 K 533
K
Sbjct: 426 K 426
>gi|363752988|ref|XP_003646710.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890346|gb|AET39893.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
Length = 988
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 133/228 (58%), Gaps = 24/228 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ QELL FG+P++ AP EAEAQCA L G+ITDDSDI+LFG VYKN F +K+
Sbjct: 730 QIQELLTRFGIPYVTAPMEAEAQCAELLKLKLVDGIITDDSDIFLFGGSNVYKNMFYEKA 789
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y++ I L R+ LI LA L+GSDYT G++GVGPV+ +EILA+F
Sbjct: 790 FVEYYSSDSISLNLGLNRDMLISLAELLGSDYTTGVKGVGPVSGMEILAEF--------- 840
Query: 442 YIVESMRRFKNW-----LAKKNKPD-----THLTRKL--RNVKLNDDFPNVSVIEAYLKP 489
+ F+NW KKN + +L RKL +V L D+FPN V AY+ P
Sbjct: 841 ---RDLETFRNWYNDGQFDKKNLENESTFRKNLRRKLMKNDVILGDNFPNPFVRNAYMNP 897
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+++ + WG PDLD LR + + GW + D+ L P+++++++R
Sbjct: 898 EVDHDTTNFVWGIPDLDQLRSYLHSNLGWPSEKSDEVLGPLIRELNKR 945
>gi|348681509|gb|EGZ21325.1| hypothetical protein PHYSODRAFT_455731 [Phytophthora sojae]
Length = 502
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 42/246 (17%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ E LL+LFGVPF+V+P EAEAQCA+LE GVITDDSDI+ FG + VYKN F
Sbjct: 210 VAEVMALLRLFGVPFLVSPMEAEAQCAALEQLGLVDGVITDDSDIFPFGGQRVYKNIFHH 269
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+ V ++A DI +RE++I LALL+GSDYT G++G+G V A EI A + P
Sbjct: 270 QKFVEAFSARDIERELGFSREQIIALALLLGSDYTDGVRGIGIVNATEIAAAY-----PG 324
Query: 440 QNYIVESMRRFKNWL--------------------------------AKKNKPDTHLTRK 467
+E +R FK W+ A++ +H T +
Sbjct: 325 ----IEGLREFKEWVREFDVAKEAERKTGEELDGDSEGNSEEDDVETARERFQRSHTTVR 380
Query: 468 LRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
R +L D+FP+ V++AY+ P ++ + + +W PDL LR + AN FGW Q + D L
Sbjct: 381 -RKWELGDEFPSKQVVQAYMSPQVDRSEARFSWSAPDLSALRNYCANAFGWDQQKSDGVL 439
Query: 528 IPIMKK 533
+P+ +K
Sbjct: 440 LPLEEK 445
>gi|449543076|gb|EMD34053.1| hypothetical protein CERSUDRAFT_107818 [Ceriporiopsis subvermispora
B]
Length = 1202
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 133/223 (59%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG + V KN F++ V
Sbjct: 823 MLRLFGIPYITAPMEAEAQCAELLTLGLVDGIITDDSDVFLFGGQRVLKNMFNQSKTVEC 882
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y PD+ L R+KLI+LA L+GSDYT GL GVGPV A+E+L +F ++
Sbjct: 883 YLLPDLDRELGLDRDKLIRLAYLLGSDYTEGLPGVGPVVAMELLTEFP---------GLD 933
Query: 446 SMRRFKNWLAK-----------KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +FK+W + K+K ++ + + L+ D+PN +V +AY P ++ +
Sbjct: 934 GLHKFKDWWQRVQSGRDSEADNKSKFRRRFKKRFKELYLSSDWPNPAVRDAYYHPTVDHS 993
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD LR + + GW Q +VD L+P+++K+ +R
Sbjct: 994 EEPFKWGLPDLDALREYFNAELGWQQGKVDDLLLPVIRKMGKR 1036
>gi|339259208|ref|XP_003369790.1| putative DNA-repair protein [Trichinella spiralis]
gi|316966016|gb|EFV50652.1| putative DNA-repair protein [Trichinella spiralis]
Length = 859
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 138/240 (57%), Gaps = 18/240 (7%)
Query: 313 RPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
R S+ + E + L+LFGVP + + EAEAQCA LE ++G ITDDSDIWLFG + V
Sbjct: 570 RTVTSQILDECEVFLRLFGVPIVKSLAEAEAQCAWLEQNQISEGTITDDSDIWLFGGQHV 629
Query: 373 YKNFFDKKSHVLRYTAPDIR------------YYFELTREKLIQLALLVGSDYTPGLQGV 420
Y+N F KK V + I+ + L REK I LA+LVG DY+ G++ +
Sbjct: 630 YRNLFVKKKLVQYFDMNTIKELSSLINCIAHPVFSALNREKFILLAMLVGCDYSQGVENL 689
Query: 421 GPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKP-DTHLTRKLRNVKLN--DDF 477
G VTALEI+A+F+ + Q+ +E++ F+ W P ++ +LR + + F
Sbjct: 690 GVVTALEIIAEFNS--AAEQSTPIETLVSFRQWFQSAPLPGESTFRTRLRKLCCHFPGTF 747
Query: 478 PNVSVIEAYLKPDINT-NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
P+ V +A+L P +N + + W PDLD +RR+A F WS+ + DQ L+P+MKK+ +
Sbjct: 748 PDQCVYDAFLNPKVNHFHAEDFKWNLPDLDAIRRYAEENFNWSKEKTDQHLLPVMKKLGR 807
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 107 IYIMGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
+ +MGV GLWK+L+A+ KPV +E+L K+LAV +
Sbjct: 71 VNVMGVKGLWKILDAASKPVTLESLSGKILAVDL 104
>gi|308810128|ref|XP_003082373.1| 5'-3' exonuclease (ISS) [Ostreococcus tauri]
gi|116060841|emb|CAL57319.1| 5'-3' exonuclease (ISS), partial [Ostreococcus tauri]
Length = 987
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 146/274 (53%), Gaps = 39/274 (14%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
E E Q LE K V+ +M + QELL LFG+P+I+AP EAEAQCA L
Sbjct: 599 EEERQMLELEHRQATKAAEQVTDEMYRDVQELLTLFGIPYIIAPQEAEAQCAYLNEQKLV 658
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
VITDDSD++LFGA VY+NFF K + Y+A IR L R + IQLALL+GSDYT
Sbjct: 659 DAVITDDSDVFLFGASLVYRNFFQDKKYCEVYSADRIRKDIGLDRNRFIQLALLLGSDYT 718
Query: 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL-------------------A 455
G+ G+G V ALEI++ F + ++E+ + FK W+
Sbjct: 719 EGVSGIGIVNALEIVSAF-------RGDVIEASKAFKEWVDLEELTMVPDHLLPNPSPSK 771
Query: 456 KKNKPDTHLTRKL--------RNVK----LNDDFPNVSVIEAYLKPDINTNVQKLAWGTP 503
KN D + L R++K + ++FP++ V++AY P ++ + + WG P
Sbjct: 772 SKNISDDGTEQSLAEAFKEKHRSLKKSWDVPENFPSIEVVKAYQNPSVDRSEEPFEWGKP 831
Query: 504 DLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
D+D LR + F W+++ DQ L P+MK +R
Sbjct: 832 DVDLLRLYCVKNFAWTRDATDQVLEPMMKAWEER 865
>gi|393220967|gb|EJD06452.1| PIN domain-like protein, partial [Fomitiporia mediterranea MF3/22]
Length = 1250
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 134/223 (60%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA+L GVITDDSD++LFGA+ VYKN F++ V
Sbjct: 826 MLRLFGIPYITAPMEAEAQCAALVDLGLVDGVITDDSDVFLFGAKRVYKNMFNQSKTVEC 885
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R LI+LA L+GSDYT GL GVGPV A+E+L +F P D +
Sbjct: 886 FLLTDLARELGLDRGTLIRLAYLLGSDYTLGLPGVGPVVAMELLQEF-PGD--------D 936
Query: 446 SMRRFKNWLAKKNKPDTHLTRKLRN-----------VKLNDDFPNVSVIEAYLKPDINTN 494
+ +FK+W K + + N + L D+PN +V +AY P ++T+
Sbjct: 937 GLHKFKDWWMKVQSGRDRESDNISNFRRRFKKRFKDLYLPGDWPNPAVRDAYYHPVVDTS 996
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLDGLR F ++ W+ +VD+ L+PI++++++R
Sbjct: 997 EEPFKWGLPDLDGLRSFFHDELSWNAGKVDELLLPIIQRMNKR 1039
>gi|303270955|ref|XP_003054839.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462813|gb|EEH60091.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 237
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 126/220 (57%), Gaps = 18/220 (8%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E Q+LL LFG+P+I+AP EAEAQCA L+ VITDDSD +LFGA+T+Y+N F+ K
Sbjct: 4 EVQQLLTLFGIPYIIAPQEAEAQCAWLDREGFVDAVITDDSDAFLFGAKTIYRNVFESKK 63
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y A + L R K+ QLALL+GSDYT G+ GVG V ALE++ F
Sbjct: 64 YVEFYDANRVDADLGLDRAKMAQLALLLGSDYTEGVTGVGIVNALEVVLNFPG------- 116
Query: 442 YIVESMRRFKNWLAKK---NKPDTHLTRKLRNVKLND------DFPNVSVIEAYLKPDIN 492
VE + +F W+ + KP KL++ L DFP+ V++AY P ++
Sbjct: 117 --VEGLTKFAEWVGESEFTGKPAAIREFKLKHRTLKKAWELPRDFPSERVLDAYANPSVD 174
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ +K WG PDLD LR F F W + D L+P++K
Sbjct: 175 ASREKFEWGEPDLDALRLFCGEHFAWRPTQTDDLLLPVVK 214
>gi|145352686|ref|XP_001420669.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580904|gb|ABO98962.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 271
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 140/243 (57%), Gaps = 34/243 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ QELL LFG+P+I+AP EAEAQCA L VITDDSD++LFGA VY+NFF +K
Sbjct: 4 DVQELLTLFGIPYIIAPQEAEAQCAYLNQHKLVDAVITDDSDVFLFGASHVYRNFFSEKK 63
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+ YTA I+ L R++ IQLALL+GSDYT G+ GVG V ALEI++ F +
Sbjct: 64 YCEVYTADRIKRELGLDRDRFIQLALLLGSDYTEGVGGVGIVNALEIVSVF-------KG 116
Query: 442 YIVESMRRFKNWL-------------------AKKNKPDTHLT----RKLRNVK----LN 474
++++ + F+ W+ + ++ D +T K R++K +
Sbjct: 117 NVMDASKAFREWIDMEELTMVPERLLPSPSKTSAESATDDAITAAFKEKHRSLKKSWEVP 176
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
++P++ V++AY P ++ + + WG PDLD LR F W+++ DQ L+P+MK
Sbjct: 177 ANYPSLEVVKAYQYPSVDQSEETFEWGKPDLDMLRLFCIKTLSWTRDAADQILLPMMKSW 236
Query: 535 SQR 537
S+R
Sbjct: 237 SKR 239
>gi|443897481|dbj|GAC74821.1| 5'-3' exonuclease [Pseudozyma antarctica T-34]
Length = 1544
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 145/256 (56%), Gaps = 22/256 (8%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
E+E E ++ ++++M E Q +L+LFG+P+I AP EAEAQCA L
Sbjct: 1032 ESEVNALRAEFANSRRSEEDITKQMAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLV 1091
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
G+ITDDSD++LFG +YKN F+ V + D++ L REKL++LA +GSDYT
Sbjct: 1092 DGIITDDSDVFLFGGTRIYKNMFNNNRIVECFLLSDMQRELGLDREKLVRLAYYLGSDYT 1151
Query: 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAK-KNKPDTH---------- 463
GL GVGPV A+E+LA F P ++ ++ +F+ W + + DTH
Sbjct: 1152 EGLAGVGPVVAMELLALF-----PGEDGLL----KFREWWMRVQTGADTHEHTRGKTMRR 1202
Query: 464 LTRKLRN-VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
+ + LRN V L +P +V++AY P ++ + + AWG PDLD LR F W ++
Sbjct: 1203 IKKNLRNKVHLEPSWPEPAVLDAYYAPTVDESDEPFAWGLPDLDSLRTFLGEYLHWPVSK 1262
Query: 523 VDQTLIPIMKKISQRS 538
DQ L+PI+++ + R+
Sbjct: 1263 TDQYLLPIIERQNART 1278
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW+LL+ +P+ +ETLE K LA+
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAI 29
>gi|390364842|ref|XP_790336.3| PREDICTED: DNA repair protein complementing XP-G cells-like
[Strongylocentrotus purpuratus]
Length = 375
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 152/267 (56%), Gaps = 23/267 (8%)
Query: 274 QMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKM-------LEAQEL 326
Q S + E+ + GV ++ E E + + L +K+RR + +++E+
Sbjct: 53 QESDQEPEIDEWHGV-YVDKMNEMEKKLHTERLALEKERRKQQKKSYSITDTMYADSKEM 111
Query: 327 LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 386
LQ FG+P+I +P EAEAQCA L+L N T+G ITDD DIWLFG R V+++FF KK +
Sbjct: 112 LQCFGIPYIESPQEAEAQCAFLDLTNQTEGTITDDGDIWLFGGRRVFRHFFSKKKDPEYF 171
Query: 387 TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
DI + L R+KLI LA LVGSDYT G+QG+G V A+EILA+F + + +++
Sbjct: 172 RVGDIERHLLLDRKKLINLAYLVGSDYTLGIQGIGSVGAMEILAEF-------KGHGLKT 224
Query: 447 MRRFKNWLAK---KNKPDTHLTR-KLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGT 502
++ FK+W ++ + P + TR K + L D+FPN + +AY P I+ + + WG
Sbjct: 225 LKDFKSWWSRTQDQGVPSLNATRSKWCKLVLPDEFPNPLIAKAYTNPAIDESEEGFQWGL 284
Query: 503 PDLDGLR----RFAANKFGWSQNRVDQ 525
PDL LR +F+ + W DQ
Sbjct: 285 PDLGLLREYPFKFSHKEKSWWSRTQDQ 311
>gi|325192518|emb|CCA26951.1| DNA repair protein putative [Albugo laibachii Nc14]
Length = 939
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 125/240 (52%), Gaps = 35/240 (14%)
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 384
ELL LFGVPF+V P EAEAQCA+LE G++TDDSDI+ FG VYKN F + V
Sbjct: 658 ELLTLFGVPFLVCPMEAEAQCATLEQLGLVDGIVTDDSDIFPFGGTKVYKNIFHHQKFVE 717
Query: 385 RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIV 444
+ DI TR +I LALL+GSDYTPG++G+G V A EI++ F S +
Sbjct: 718 AFDTRDIERELGFTRADMISLALLLGSDYTPGVRGIGIVNAAEIISSFGSSSA------- 770
Query: 445 ESMRRFKNW----------------------LAKKNKPD----THLTRKLRNVKLNDDFP 478
++ FK W L K + D TH + + R +L + FP
Sbjct: 771 -GLKEFKAWIEEFDVHEEANRRKEKRKGEEELEKMSPKDRFKYTHASVR-RKWELGETFP 828
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
N V+EAYL P ++T +K W PD L+ + FGW N++D L P+ K + S
Sbjct: 829 NAQVMEAYLHPQVDTCSKKFQWSLPDFTELKNYCTQVFGWEMNKIDGMLTPLAKTLENSS 888
>gi|270006914|gb|EFA03362.1| hypothetical protein TcasGA2_TC013347 [Tribolium castaneum]
Length = 1015
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 125/218 (57%), Gaps = 48/218 (22%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EAQELL+LFGVP+I+AP EAEAQCA LEL +TD
Sbjct: 680 EAQELLELFGVPYIIAPMEAEAQCAFLELIG-----LTD--------------------- 713
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
ELTRE++I LA+LVGSDYT GL GVGPVTALEILA F P +N
Sbjct: 714 --------------ELTREQMILLAMLVGSDYTTGLTGVGPVTALEILAAFPP-----KN 754
Query: 442 YIVESMRRFKNWLAKKNKP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + FKNW+ K P T L KL+NV ++FPN +++AYL+P + T+ +
Sbjct: 755 QLISGLAEFKNWVIKGKMPAPGRTSLRSKLKNVSFTENFPNPQIVQAYLEPQVETSKESF 814
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
WG D+ GL FA KFGW++ + ++ L PI++++ +
Sbjct: 815 TWGKLDVFGLVEFARQKFGWTKTKTEEILNPILRRMGE 852
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 46/57 (80%)
Query: 250 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306
L K++ +LL+E+ + R A ITEQM +EAQELL+LFGVP+I+AP EAEAQCA LEL
Sbjct: 652 LRKEQTELLVEKQTKERTAGNITEQMFQEAQELLELFGVPYIIAPMEAEAQCAFLEL 708
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 29/31 (93%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV+GLW+L+E SGKPVP+E+LENKVLAV +
Sbjct: 1 MGVHGLWRLIEPSGKPVPLESLENKVLAVDV 31
>gi|71019629|ref|XP_760045.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
gi|46099838|gb|EAK85071.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
Length = 1532
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 22/255 (8%)
Query: 297 AEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
+E E ++ ++++M E Q +L+LFG+P+I AP EAEAQCA L
Sbjct: 1011 SEVNALRAEFANSRRSEEDITKQMAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLVD 1070
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G+ITDDSD++LFG VYKN F+ V + D++ L REKL+QLA +GSDYT
Sbjct: 1071 GIITDDSDVFLFGGTRVYKNMFNNNKIVECFLLSDMQRELGLDREKLVQLAYYLGSDYTE 1130
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAK-----------KNKPDTHL 464
GL GVGPV A+E+LA F P Q+ ++ +F++W + + K +
Sbjct: 1131 GLVGVGPVVAMELLALF-----PGQDGLL----KFRDWWMRVQMGQDTEEHTRGKTMRRI 1181
Query: 465 TRKLRN-VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
R L N V L +P +V++AY P ++ + + AWG PDLD LR F W +
Sbjct: 1182 KRNLHNKVHLEPSWPEHAVLDAYFAPTVDESDEPFAWGLPDLDSLRTFLGEYLHWPVTKT 1241
Query: 524 DQTLIPIMKKISQRS 538
DQ L+PI+++ + R+
Sbjct: 1242 DQYLLPIIERQNTRN 1256
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW+LL+ +P+ +ETLE K LA+
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAI 29
>gi|170099279|ref|XP_001880858.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644383|gb|EDR08633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1137
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 136/224 (60%), Gaps = 20/224 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG + VYKN F++ V
Sbjct: 749 MLRLFGIPYITAPMEAEAQCAELVTLKLVDGIITDDSDVFLFGGQRVYKNMFNQSKTVEG 808
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L ++ LI+LA L+GSDY GL GVGPV A+E+L +F D
Sbjct: 809 FALADLTRDLGLDQDALIRLAYLLGSDYVEGLPGVGPVVAMELLQEFPGKD--------- 859
Query: 446 SMRRFKNWLAK----KNKPDTH-------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +FK+W K K+K + + +K +++ L D+PN +V +AY P ++++
Sbjct: 860 GLYKFKDWWTKVQAGKDKGEDNKSKFRKSFKKKFKDLYLPSDWPNSAVQDAYYHPIVDSS 919
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ WG PDLD LR F + GW + +VD+ L+PI++K+++RS
Sbjct: 920 EEPFKWGLPDLDALRDFLNQELGWGKAKVDENLLPIIQKMNKRS 963
>gi|392564416|gb|EIW57594.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 1244
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 137/224 (61%), Gaps = 20/224 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA+L G+ITDDSD++LFG V KN F++ V
Sbjct: 845 MLRLFGIPYITAPMEAEAQCAALLSFGLVDGIITDDSDVFLFGGGRVLKNMFNQSKTVEC 904
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R+KL++LA L+GSDYT GL GVGPV A+E+L++F P Q+
Sbjct: 905 FLLSDLERELGLDRDKLVRLAYLLGSDYTDGLPGVGPVVAMELLSEF-----PGQD---- 955
Query: 446 SMRRFKNWLAK----KNKPDTHLT-------RKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +F+ W K ++K + T +K +++ L ++PN +V +AY P ++ +
Sbjct: 956 GLHKFRAWWQKVQSGRDKAEESATRFRKRFKKKFKDLYLPGEWPNPAVRDAYYHPAVDES 1015
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ WG PDLD LR F + GW Q +VD L+PI++K+S+RS
Sbjct: 1016 REHFKWGMPDLDALRDFFNAELGWDQIKVDDLLLPIIRKMSKRS 1059
>gi|340500548|gb|EGR27416.1| hypothetical protein IMG5_195980 [Ichthyophthirius multifiliis]
Length = 989
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 28/239 (11%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+ K + ++LL LFG+P++ +P EAEAQCA LE+ G++TDDSD++LFG R VY+N
Sbjct: 660 IQFKFQQIKQLLILFGIPWVESPSEAEAQCAFLEMHQLVDGIVTDDSDVFLFGGRKVYRN 719
Query: 376 FFDKKSHVLRY-TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
F + S +RY +I L R++LI +AL +GSDYT G++GVG V + EI+ F
Sbjct: 720 LFSQNSQYVRYINIENIEKDLGLDRQRLILMALFLGSDYTLGIKGVGIVNSFEIVTAFDN 779
Query: 435 SDSPNQNYIVESMRRFKNWLAKKN----KPDTHLTR----------KLRNVKLN----DD 476
D +++RFK W +K + P H T +N K N +D
Sbjct: 780 MD---------ALKRFKIWASKADILLEDPSIHYTNISIKEKNYKEYHKNFKKNWEIPND 830
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
FP+ V+ AYLKP I+ +++ W P+ D L+ + + FGW + T+ P+ KK++
Sbjct: 831 FPSCKVVNAYLKPKIDESLEAFKWAKPNFDLLKLYCKSMFGWDYALIQDTIEPLEKKVN 889
>gi|395332541|gb|EJF64920.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 1217
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 135/224 (60%), Gaps = 20/224 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA+L G+ITDDSD++LFG V KN F++ V
Sbjct: 812 MLRLFGIPYITAPMEAEAQCAALLSLGLVDGIITDDSDVFLFGGGRVLKNMFNQSKTVEC 871
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R+KL++LA L+GSDYT GL GVGPV A+E+L++F D
Sbjct: 872 FLTTDLERELGLDRDKLVRLAYLLGSDYTEGLPGVGPVVAMELLSEFPGHD--------- 922
Query: 446 SMRRFKNWLAK----KNKPDTHLTR-------KLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +FK W K ++K + + K +++ L ++PN +V +AY P ++ +
Sbjct: 923 GLHKFKQWWMKVQSGRDKAEESASSFRKRFKKKFKDLYLLPEWPNPAVRDAYYHPTVDES 982
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ WG PDLD LR F ++ GW Q +VD L+PI++K+++RS
Sbjct: 983 TEPFKWGFPDLDALRGFFNSELGWDQTKVDDLLLPIIRKMNKRS 1026
>gi|403413406|emb|CCM00106.1| predicted protein [Fibroporia radiculosa]
Length = 2893
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG V KN F++ V
Sbjct: 2505 MLRLFGIPYITAPMEAEAQCAELLSLGLVDGIITDDSDVFLFGGMRVLKNMFNQSKTVEC 2564
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R+KLI+LA L+GSDYT GL GVGPV A+E+L +F P Q +
Sbjct: 2565 FLLSDLERELGLERDKLIRLAYLLGSDYTDGLPGVGPVVAMELLKEF-----PGQ----D 2615
Query: 446 SMRRFKNWL-----AKKNKPDTH------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +FK W K K DT+ ++ + + L D++PN +V +AY P ++ +
Sbjct: 2616 GLHKFKYWWQKVQSGKDTKEDTNSGFRKRFKKRFKELYLPDEWPNPAVRDAYHHPTVDES 2675
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD LR F ++ GW Q +VD L+PI++K+ +R
Sbjct: 2676 EEPFKWGLPDLDALRNFFNSELGWQQAKVDDLLLPIIRKMGKR 2718
>gi|343424970|emb|CBQ68507.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Sporisorium reilianum SRZ2]
Length = 1495
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 143/256 (55%), Gaps = 22/256 (8%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
E+E E ++ ++++M E Q +L+LFG+P+I AP EAEAQCA L
Sbjct: 983 ESEVNALRTEFANSRRSEEDITKQMAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLV 1042
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
G+ITDDSD++LFG+ +YKN F+ V + D++ L REKL++LA +GSDYT
Sbjct: 1043 DGIITDDSDVFLFGSTRIYKNMFNNNKIVECFLLSDMQRELGLDREKLVRLAYYLGSDYT 1102
Query: 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAK-----------KNKPDTH 463
GL GVGPV A+E+LA F P ++ ++ +F+ W + + K
Sbjct: 1103 DGLAGVGPVVAMELLALF-----PGEDGLL----KFREWWLRVQMGQDTEEHTRGKTMRR 1153
Query: 464 LTRKLRN-VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
+ + LRN V L +P +V++AY P ++ + + AWG PDLD LR F W +
Sbjct: 1154 IKKNLRNKVHLEPSWPEPAVLDAYYAPTVDESDEPFAWGLPDLDSLRTFLGEYLHWPVTK 1213
Query: 523 VDQTLIPIMKKISQRS 538
DQ L+PI+++ + R+
Sbjct: 1214 TDQYLLPIIERQNARN 1229
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW+LL+ +P+ +ETLE K LA+
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAI 29
>gi|320580410|gb|EFW94633.1| Single-stranded DNA endonuclease [Ogataea parapolymorpha DL-1]
Length = 1011
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 135/224 (60%), Gaps = 10/224 (4%)
Query: 318 RKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF 377
R +L+ Q++L FG+P+I AP EAEAQCA L G+ITDDSD +LFG VYKN F
Sbjct: 728 RMILDIQDMLSRFGLPYITAPMEAEAQCAELLRLGLVDGIITDDSDCFLFGGDRVYKNMF 787
Query: 378 DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS 437
++K+ V Y D+ L R LI LALL+GSDYT G++GVG V A+EILA+F +S
Sbjct: 788 NEKNFVECYQMEDLERDLGLDRRMLIDLALLLGSDYTEGIKGVGKVAAMEILAEFGTLES 847
Query: 438 PNQNYIVESMRRFKNWLAKKNKPDT-----HLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
++ ++N + ++K T + K ++ L +FP+ VIEAYL P+++
Sbjct: 848 FKHWWL-----DYQNGIIDESKETTVKRKLRKSLKKTDLYLTPEFPDKRVIEAYLHPEVD 902
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
+ + WG P+LD LR F GW + +VD L+PI++ +++
Sbjct: 903 HDKSEFQWGYPNLDKLRTFLMYNVGWGKEKVDTILLPIIQNMNK 946
>gi|388858154|emb|CCF48222.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Ustilago hordei]
Length = 1592
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 143/256 (55%), Gaps = 22/256 (8%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
E+E E ++ ++++M E Q +L+LFG+P+I AP EAEAQCA L
Sbjct: 1014 ESEVNALRAEFANSRRSEEDITKQMAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLV 1073
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
G+ITDDSD++LFG +YKN F+ V + D++ L REKL++LA +GSDYT
Sbjct: 1074 DGIITDDSDVFLFGGTRIYKNMFNNNKIVECFLLSDMQRELGLDREKLVRLAYYLGSDYT 1133
Query: 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAK-----------KNKPDTH 463
GL GVGPV A+E+LA F P ++ ++ +F++W + + K
Sbjct: 1134 EGLVGVGPVVAMELLALF-----PGEDGLL----KFRDWWMRVQMGQDTEEHTRGKTMRR 1184
Query: 464 LTRKLRN-VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
+ + LRN V L +P +V++AY P ++ + + AWG PDLD LR F W +
Sbjct: 1185 IKKNLRNKVHLEPSWPEPAVLDAYYNPTVDESDEPFAWGLPDLDSLRTFLGEYLHWPVTK 1244
Query: 523 VDQTLIPIMKKISQRS 538
DQ L+PI+++ + R+
Sbjct: 1245 TDQYLLPIIERQNVRN 1260
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW+LL+ +P+ +ETLE K LA+
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAI 29
>gi|336370553|gb|EGN98893.1| hypothetical protein SERLA73DRAFT_108084 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1055
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 134/223 (60%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG + V+KN F++ V
Sbjct: 750 LLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNMFNQSKTVEC 809
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R LI+LA L+GSDY GL GVGPV A+E+L +F D
Sbjct: 810 FLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKEFPGED--------- 860
Query: 446 SMRRFKNWLAK----KNKPDTH-------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +FK+W K ++K + + +K +++ L ++PN +V +AY P ++++
Sbjct: 861 GLHKFKDWWLKVQSGRDKDEENKSKFRKRFKKKYKDLYLPQEWPNAAVRDAYYHPTVDSS 920
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD LR F + GW Q++VD L+PI++K+++R
Sbjct: 921 EEPFKWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKR 963
>gi|401888761|gb|EJT52712.1| hypothetical protein A1Q1_02762 [Trichosporon asahii var. asahii CBS
2479]
Length = 1245
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 126/230 (54%), Gaps = 21/230 (9%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+++ Q LL+ FG+P+I AP EAEAQCA L G+ITDDSD++LFG +KN F+
Sbjct: 881 VVQIQTLLRHFGIPYITAPMEAEAQCAKLAELGLVDGIITDDSDVFLFGGTQCFKNIFND 940
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
A D+ LTRE+LI L+ L+GSDYT GL G+GPV ALE+LA F D
Sbjct: 941 NKFAECILATDVERELSLTRERLISLSYLLGSDYTIGLPGIGPVLALELLANFPGPD--- 997
Query: 440 QNYIVESMRRFKNWLAKKNK-------PDTHLTRKLR-----NVKLNDDFPNVSVIEAYL 487
+ RFK W + + DT R + ++ L D+PN V EAYL
Sbjct: 998 ------GLLRFKEWWTRVQRGQDLDVEADTKWKRNFKKRFSGSIFLLSDWPNPQVREAYL 1051
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P + + + WG P L LR F + WS ++VD L PI+++I+QR
Sbjct: 1052 YPTTDESDEPFHWGFPRLQALRTFLHEELSWSISKVDDELTPIVQRIAQR 1101
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW LL G+PV +E+LE K LA+
Sbjct: 1 MGVKGLWSLLNPVGRPVQIESLEGKRLAI 29
>gi|238579680|ref|XP_002389137.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
gi|215451076|gb|EEB90067.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
Length = 391
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 134/227 (59%), Gaps = 23/227 (10%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA L G+ITDDSD+++FG + VYKN F++ V
Sbjct: 2 MLRLFGIPYITAPMEAEAQCAVLVSLGLVDGIITDDSDVFVFGGQRVYKNMFNQSKTVEC 61
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L + LI+LA L+GSDY GL GVGPV A+E+L +F D
Sbjct: 62 FLLSDLSRELGLDQGTLIRLAYLLGSDYVEGLPGVGPVVAMELLKEFPGED--------- 112
Query: 446 SMRRFKNWLAK----KNKPD------TH----LTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +FK+W K ++K D TH K +++ L ++PN +V +AY P +
Sbjct: 113 GLHKFKDWWTKVQTGRDKEDHIAWLWTHKYLSSEDKTKDLYLPPEWPNSAVRDAYYHPTV 172
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ + + WG PDLD LR F + GW Q++VD L+PI++++++RS
Sbjct: 173 DESDEPFKWGLPDLDALREFLREELGWGQSKVDDLLLPIIQRVNKRS 219
>gi|336383338|gb|EGO24487.1| hypothetical protein SERLADRAFT_467880 [Serpula lacrymans var.
lacrymans S7.9]
Length = 413
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 134/223 (60%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+LFG+P+I AP EAEAQCA L G+ITDDSD++LFG + V+KN F++ V
Sbjct: 18 LLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNMFNQSKTVEC 77
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R LI+LA L+GSDY GL GVGPV A+E+L +F D
Sbjct: 78 FLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKEFPGED--------- 128
Query: 446 SMRRFKNWLAK----KNKPDTH-------LTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +FK+W K ++K + + +K +++ L ++PN +V +AY P ++++
Sbjct: 129 GLHKFKDWWLKVQSGRDKDEENKSKFRKRFKKKYKDLYLPQEWPNAAVRDAYYHPTVDSS 188
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD LR F + GW Q++VD L+PI++K+++R
Sbjct: 189 EEPFKWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKR 231
>gi|397601505|gb|EJK57927.1| hypothetical protein THAOC_21987, partial [Thalassiosira oceanica]
Length = 268
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 13/222 (5%)
Query: 329 LFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTA 388
L G+P++ +P EAEAQCA+LE GV+T+DSDI++FG + VYKNFFD++ V Y A
Sbjct: 1 LCGIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNFFDEQKFVEAYYA 60
Query: 389 PDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMR 448
DI L +++L+ LA+L+G DYT G++GVG V +E+L F P+ + + +
Sbjct: 61 RDIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAFPPAADGVEG-VHGGLS 119
Query: 449 RFKNWLAKKNK--------PDTHLTRKLRNVKLN----DDFPNVSVIEAYLKPDINTNVQ 496
RF++W+ N P+ K R+ + DFP+ +I AYLKP ++T+
Sbjct: 120 RFRDWMDGINDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYLKPAVDTSGT 179
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ W PDLD L+RF A+ GW + + + P++K + S
Sbjct: 180 RFTWARPDLDALQRFCADSLGWEREETARVVGPVLKVLESTS 221
>gi|392577233|gb|EIW70362.1| hypothetical protein TREMEDRAFT_43101 [Tremella mesenterica DSM 1558]
Length = 1306
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 131/230 (56%), Gaps = 21/230 (9%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ + Q LL+ FG+P+I AP EAEAQCA L G+ITDDSD++LFG +KN F+
Sbjct: 907 IAQIQTLLRHFGIPYITAPMEAEAQCAKLATLGLVDGIITDDSDVFLFGGNQCFKNIFND 966
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+V + + DI+ L RE+LI LA L+GSDYT GL GVGPV ALE+L+ F P
Sbjct: 967 SKYVECFLSSDIQREISLDRERLISLAYLLGSDYTIGLPGVGPVIALELLSNF-----PG 1021
Query: 440 QNYIVESMRRFKNW-----------LAKKNKPDTHLTRKLRN-VKLNDDFPNVSVIEAYL 487
+ + E FK W + + N +K +N + L D+PN V EAYL
Sbjct: 1022 RRGLEE----FKEWWLKVQRGQDEVIIENNNWKERFKKKNKNSIFLTTDWPNPLVREAYL 1077
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P+ + + ++ WG P L LR F + WS ++VD L PI+++I++R
Sbjct: 1078 FPETDDSKEEFHWGFPKLSSLRSFLHEELSWSISKVDDELTPIVQRIARR 1127
>gi|224006438|ref|XP_002292179.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
gi|220971821|gb|EED90154.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
Length = 307
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 19/228 (8%)
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 384
ELL+L G+P++ +P EAEAQCA+LE GV+T+DSDI++FG R VYKNFF+++ +V
Sbjct: 23 ELLELCGIPWVESPSEAEAQCAALEELGLVDGVVTEDSDIFVFGGRKVYKNFFNEQQYVE 82
Query: 385 RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIV 444
Y A D L + ++I LA+L+G DYT G++GVG V +EIL F P I
Sbjct: 83 AYYAKDAEKELALGKHQMIALAMLLGGDYTDGVKGVGIVNGMEILQAF-----PIGEDIH 137
Query: 445 ESMRRFKNWLAKKNKPDTHLTRKLRNVKL--------------NDDFPNVSVIEAYLKPD 490
S+++F+ WL P ++ L N + DFP+ ++I AY KP
Sbjct: 138 ASLQKFREWLDGMGDPPSNADGTLSNEMIFHKKHKSARHRWVAPSDFPSRAIISAYQKPT 197
Query: 491 INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
++ + + +W P+++GLR F + GW Q + + P++K + S
Sbjct: 198 VDKSEARFSWAKPNMEGLRHFCSETLGWDQEETSRIVGPVLKVLESGS 245
>gi|145546103|ref|XP_001458735.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426556|emb|CAK91338.1| unnamed protein product [Paramecium tetraurelia]
Length = 872
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 141/240 (58%), Gaps = 28/240 (11%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+ +K + ++LL LFG+P+I+APGEAEAQCA L+ VIT+DSD++LFGA V K
Sbjct: 558 MQQKFEDIRQLLALFGIPWIIAPGEAEAQCAYLQQNGLVDCVITEDSDVFLFGATKVLKG 617
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
FF+ K+ ++ Y I+ L R++LI LAL +GSDYT G++GVG V A+EI+ F
Sbjct: 618 FFESKTSLVYYDTQYIKEDLGLNRDQLIYLALFLGSDYTLGIKGVGIVNAMEIVEVFDN- 676
Query: 436 DSPNQNYIVESMRRFKNWLAK------------KNKPDTHLTRK--LRNVK----LNDDF 477
VE+++RF +W +K +N P+ K +N K L DF
Sbjct: 677 --------VEALKRFTSWASKADVLLENASSHYENIPEKERIYKEFHKNYKKYWELPSDF 728
Query: 478 PNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL-IPIMKKISQ 536
PN+ VI Y+KP ++ ++++ WG P ++ + F + + +SQ RV++T+ IP K I +
Sbjct: 729 PNIEVINGYMKPRVDESLEQFTWGQPAVEKIIEFCSQQLRYSQERVEETIKIPFQKIIQK 788
>gi|356498232|ref|XP_003517957.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like [Glycine
max]
Length = 1707
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 140/273 (51%), Gaps = 57/273 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E QELLQ+FG+P+I+AP EAEAQCA LEL GV+TDDSD+ LFGAR+VYKN FD +
Sbjct: 1025 ECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRK 1084
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI---------LAKF 432
+V Y DI LTREKLI++ALL+GSDYT G+ G+G V A+E+ L KF
Sbjct: 1085 YVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKF 1144
Query: 433 ------------------SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTR-------- 466
S S+S + +E + K++ ++
Sbjct: 1145 RQWVESPDPTILGRLDANSGSNSRKKGSKIEEKMNSSSCNVKESAVMQNICHAQEQNELS 1204
Query: 467 ------------KLRNVKLN----DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLR- 509
K RNV N FP+ +VI AY P ++ + + WG PD LR
Sbjct: 1205 DYIQEIKQTFFNKHRNVSKNWHIPSSFPSDTVISAYYSPHVDKSTEPFTWGKPDHLVLRK 1264
Query: 510 -----RFAANKFGWSQNRVDQTLIPIMKKISQR 537
R KFGW+ + D+ ++P++K+ ++R
Sbjct: 1265 XVHMFRLCWEKFGWTGQKADELILPVLKEYNKR 1297
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV+GLW+LL G+ V VETL K LAV
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKTLAV 29
>gi|406697519|gb|EKD00778.1| single-stranded DNA specific endodeoxyribonuclease [Trichosporon
asahii var. asahii CBS 8904]
Length = 1166
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 129/231 (55%), Gaps = 23/231 (9%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASL-ELGNHTQGVITDDSDIWLFGARTVYKNFFD 378
+++ Q LL+ FG+P+I AP EAEAQCA L ELG G+ITDDSD++LFG +KN F+
Sbjct: 802 VVQIQTLLRHFGIPYITAPMEAEAQCAKLAELG-LVDGIITDDSDVFLFGGTQCFKNIFN 860
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
A D+ LTRE+LI L+ L+GSDYT GL G+GPV ALE+LA F D
Sbjct: 861 DNKFAECILATDVERELSLTRERLISLSYLLGSDYTIGLPGIGPVLALELLANFPGPD-- 918
Query: 439 NQNYIVESMRRFKNWLAKKNK-------PDTHLTRKLR-----NVKLNDDFPNVSVIEAY 486
+ +FK W + + DT R + ++ L D+PN V EAY
Sbjct: 919 -------GLLKFKEWWMRVQRGQDLDVEADTKWKRNFKKRFSGSIFLLSDWPNPQVREAY 971
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L P + + + WG P L LR F + WS ++VD L PI+++I+QR
Sbjct: 972 LYPTTDESDEPFHWGFPRLQALRTFLHEELSWSISKVDDELTPIVQRIAQR 1022
>gi|328865755|gb|EGG14141.1| hypothetical protein DFA_11908 [Dictyostelium fasciculatum]
Length = 1098
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 22/219 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR---TVYKNFFD 378
E ELL +FG+PFI +P EAE+QCA L GV+TDDSDI LF ++ VY+N F
Sbjct: 789 ECHELLSMFGIPFITSPTEAESQCAELYNLGFVDGVVTDDSDILLFASQPDMAVYRNLFQ 848
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+Y +I+ L R+ LI LALL+G DYTPG+ G+G V A+EILA+F
Sbjct: 849 HDPQ--KYQPKEIKRLMGLERQDLISLALLLGCDYTPGVHGIGIVNAMEILAEF------ 900
Query: 439 NQNYIVESMRRFKNWLA--KKNKPDTH---LTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
E+++ FK +++ +KP H ++ +N+ L FP+ V++A++ P++N+
Sbjct: 901 ------ENLQDFKKYISGLDGSKPTDHPNFMSLLKKNLVLASTFPSDQVVQAFINPEVNS 954
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ + W PD++ LR KFGWS R+D L PI++
Sbjct: 955 SKEPFTWTHPDIESLRCLTIEKFGWSNERIDFVLNPILR 993
>gi|340376739|ref|XP_003386889.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Amphimedon queenslandica]
Length = 739
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 128/212 (60%), Gaps = 11/212 (5%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+LFG+P++ +P EAEAQC++LE + TQG ITDD+D++LFG VY++ F V
Sbjct: 456 LLRLFGLPYLESPSEAEAQCSTLESLSLTQGTITDDNDVFLFGGMNVYRHMFTGSHDVEY 515
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y DI L R LI LA L+G DYT G++GVG V ALE++ F + +E
Sbjct: 516 YRNADIETLLGLDRNNLIILAYLLGCDYTDGIEGVGVVNALELVQFF-------KGEGLE 568
Query: 446 SMRRFK----NWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWG 501
+ + K + N ++ L +K+R + DDFPNV + + Y++P ++ + + WG
Sbjct: 569 PLIKLKQCNIDCNTVNNLKESPLQKKIRGLSFPDDFPNVLIRDQYMRPAVDDSKETFEWG 628
Query: 502 TPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
T DLD +R F +KFGWS + D+ L+P++++
Sbjct: 629 TADLDLIRDFTLDKFGWSISHTDKLLLPVLRR 660
>gi|218192294|gb|EEC74721.1| hypothetical protein OsI_10446 [Oryza sativa Indica Group]
Length = 1487
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 148/299 (49%), Gaps = 91/299 (30%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E+ N GV+TDDSD++LFGAR VYK
Sbjct: 852 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYK 911
Query: 375 NFFDKKSHVLRY---------------TAPDIRYYFE-------LTREKLIQLALLVGSD 412
N FD + +V Y + +I +F+ LTRE+LI++A+L+GSD
Sbjct: 912 NIFDDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSD 971
Query: 413 YTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL------------------ 454
YT G+ G+G V A+E+ F D +++F+ W+
Sbjct: 972 YTEGISGIGIVNAIEVAHAFPEED---------GLQKFREWVESPDPTLLGKLGMESGSS 1022
Query: 455 ------------AKKNKPDTHLTR--------------------KLRNVKLN----DDFP 478
K N + T+ K RNV N FP
Sbjct: 1023 SKKKKSGRNHSDGKGNSLEPEYTKGSDDSQSSNETQRIKEIFMSKHRNVSKNWHIPSTFP 1082
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ +VI AY+ P ++ + + +WG PD LR KFGWS+ + D+ LIP++++ ++
Sbjct: 1083 SEAVINAYISPQVDDSTEPFSWGRPDSGLLR-----KFGWSKEKADELLIPVLREYNKH 1136
>gi|392595001|gb|EIW84325.1| hypothetical protein CONPUDRAFT_100293 [Coniophora puteana RWD-64-598
SS2]
Length = 1485
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 20/223 (8%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
+L+LFG+P+I AP EAEAQCA L +GVITDDSD++LFG V+KN F++ V
Sbjct: 960 MLRLFGIPYITAPMEAEAQCAELVQLGLVEGVITDDSDVFLFGGLRVFKNMFNQSKTVEC 1019
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ L R+ L++LA L+GSDY GL GVGPV A+E+L +F +D
Sbjct: 1020 FLLSDLARELGLERDTLVRLAYLLGSDYVEGLPGVGPVVAMELLKEFPGAD--------- 1070
Query: 446 SMRRFKNWLAK-----------KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +F++W K ++K +K +++ L ++PN V +AY P ++++
Sbjct: 1071 GLHKFRDWWGKVQSGRDREADSQSKFRKRFKKKFKDLYLPPEWPNPQVRDAYYHPTVDSS 1130
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ WG PDLD LR F + W Q +VD L+PI++K+S+R
Sbjct: 1131 REPFKWGMPDLDALREFLREELSWGQKKVDDLLLPIIQKMSRR 1173
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV LW L+E G+PVP+ET+E K +A+
Sbjct: 1 MGVKSLWSLVEPVGRPVPLETVEGKAMAI 29
>gi|164663201|ref|XP_001732722.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
gi|159106625|gb|EDP45508.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
Length = 1109
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 22/225 (9%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E Q LL++FG+P++ AP EAEAQCA L + + G+ITDDSD++LFG VY+N F+ +
Sbjct: 784 EIQALLRIFGLPYLTAPMEAEAQCAQLAMQHLVDGIITDDSDVFLFGGTPVYRNMFNNRR 843
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y D+ L+RE+LIQLA L+GSDYT GL GVGPV A+EIL+ F P D
Sbjct: 844 SVECYWMNDMHRELGLSRERLIQLAFLLGSDYTEGLPGVGPVLAMEILSLF-PGDY---- 898
Query: 442 YIVESMRRFKNWLAK------------KNKPDTHLTRKLRN-VKLNDDFPNVSVIEAYLK 488
++ F+ W ++K + R LR+ V L++++P+ V +AY +
Sbjct: 899 ----ALVHFREWWQHVQIGADDEVHDARSKVRRRIKRALRDKVHLSEEWPDPLVQQAYWE 954
Query: 489 PDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
P ++ + + WG DLD +R F W ++ DQ + P+M++
Sbjct: 955 PQVDDSDEPFVWGQADLDAIRAFLQEYLRWPPSKTDQYVQPVMEQ 999
>gi|321251586|ref|XP_003192115.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
gattii WM276]
gi|317458583|gb|ADV20328.1| Single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus gattii WM276]
Length = 1263
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 124/226 (54%), Gaps = 21/226 (9%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
Q LL+ FG+P+I AP EAEAQCA L G+ITDDSD++LFG +KN F+ +
Sbjct: 892 QTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNIFNDAKYA 951
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYI 443
+ D+ LTRE+LI LA +GSDYT GL G+GPV LEILA F P + +
Sbjct: 952 ECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEILANF-----PGERGL 1006
Query: 444 VESMRRFKNWLAKKNKPD------------THLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ FK W + + D + R L+++ L D+P+ V EAYL P +
Sbjct: 1007 YD----FKEWWGRVQRGDDTEEESGTRWRKSFKKRFLKSIYLAADWPDPLVREAYLYPTV 1062
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ + + WG P L LR F + WS ++VD L PI+++IS R
Sbjct: 1063 DESEEPFHWGFPRLSALRTFLHEELSWSISKVDDELTPIVQRISLR 1108
>gi|58258651|ref|XP_566738.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. neoformans JEC21]
gi|57222875|gb|AAW40919.1| single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1323
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 124/226 (54%), Gaps = 21/226 (9%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
Q LL+ FG+P+I AP EAEAQCA L G+ITDDSD++LFG +KN F+ +
Sbjct: 952 QTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNIFNDAKYA 1011
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYI 443
+ D+ LTRE+LI LA +GSDYT GL G+GPV LEILA F P + +
Sbjct: 1012 ECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEILANF-----PGERGL 1066
Query: 444 VESMRRFKNWLAKKNKPD------------THLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ FK W + K + + R L+++ L D+P+ V EAYL P +
Sbjct: 1067 YD----FKEWWGRVQKGNDTEEESGTKWRKSFKKRFLKSIYLTADWPDPLVREAYLYPTV 1122
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ + + WG P L LR F + WS ++VD L PI+++IS R
Sbjct: 1123 DESEEPFHWGFPRLSALRTFLHEELSWSISKVDDELTPIVQRISLR 1168
>gi|397639140|gb|EJK73406.1| hypothetical protein THAOC_04971, partial [Thalassiosira oceanica]
Length = 269
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 127/220 (57%), Gaps = 13/220 (5%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
G+P++ +P EAEAQCA+LE GV+T+DSDI++FG + VYKNFFD++ V Y A D
Sbjct: 4 GIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNFFDEQKFVEAYYARD 63
Query: 391 IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRF 450
I L +++L+ LA+L+G DYT G++GVG V +E+L F P+ + + + RF
Sbjct: 64 IERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAFPPAADGVEG-VHGGLSRF 122
Query: 451 KNWL--------AKKNKPDTHLTRKLRNVKLN----DDFPNVSVIEAYLKPDINTNVQKL 498
++W+ P+ K R+ + DFP+ +I AYL+P ++T+ +
Sbjct: 123 RDWMDGIGDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYLRPAVDTSGTRF 182
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
W PDLD L+RF A+ GW + + + P++K + S
Sbjct: 183 TWARPDLDALQRFCADALGWEREETARVVGPVLKVLESTS 222
>gi|134106579|ref|XP_778300.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261003|gb|EAL23653.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1323
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 124/226 (54%), Gaps = 21/226 (9%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
Q LL+ FG+P+I AP EAEAQCA L G+ITDDSD++LFG +KN F+ +
Sbjct: 952 QTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNIFNDAKYA 1011
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYI 443
+ D+ LTRE+LI LA +GSDYT GL G+GPV LEILA F P + +
Sbjct: 1012 ECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEILANF-----PGERGL 1066
Query: 444 VESMRRFKNWLAKKNKPD------------THLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ FK W + K + + R L+++ L D+P+ V EAYL P +
Sbjct: 1067 YD----FKEWWGRVQKGNDTEEESGTKWRKSFKKRFLKSIYLTADWPDPLVREAYLYPTV 1122
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ + + WG P L LR F + WS ++VD L PI+++IS R
Sbjct: 1123 DESEEPFHWGFPRLSALRTFLHEELSWSISKVDDELTPIVQRISLR 1168
>gi|222624409|gb|EEE58541.1| hypothetical protein OsJ_09837 [Oryza sativa Japonica Group]
Length = 1494
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 147/302 (48%), Gaps = 97/302 (32%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E+ N GV+TDDSD++LFGAR VYK
Sbjct: 859 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYK 918
Query: 375 NFFDKKSHVLRY---------------TAPDIRYYFE-------LTREKLIQLALLVGSD 412
N FD + +V Y + +I +F+ LTRE+LI++A+L+GSD
Sbjct: 919 NIFDDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSD 978
Query: 413 YTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL---- 468
YT G+ G+G V A+E+ F D +++F+ W+ PD L KL
Sbjct: 979 YTEGISGIGIVNAIEVAHAFPEED---------GLQKFREWV---ESPDPTLLGKLGMES 1026
Query: 469 -------------------------------------------------RNVKLN----D 475
RNV N
Sbjct: 1027 GSSSKKKKSGRNHSDGKGNSLEPEYAKGSDDSQSSNETQRIKEIFMSKHRNVSKNWHIPS 1086
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
FP+ +VI AY+ P ++ + + +WG PD LR KFGWS+ + D+ LIP++++ +
Sbjct: 1087 TFPSEAVINAYISPQVDDSTEPFSWGRPDSGLLR-----KFGWSKEKADELLIPVLREYN 1141
Query: 536 QR 537
+
Sbjct: 1142 KH 1143
>gi|405117687|gb|AFR92462.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. grubii H99]
Length = 1222
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 124/224 (55%), Gaps = 21/224 (9%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+ FG+P+I AP EAEAQCA L G+ITDDSD++LFG +KN F+ +V
Sbjct: 837 LLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGGQCFKNIFNDAKYVEC 896
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
+ D+ LTRE+LI LA +GSDYT GL GVGPV LEILA F P + + +
Sbjct: 897 FLLADVERELMLTRERLISLAYFLGSDYTLGLPGVGPVMGLEILANF-----PGERGLYD 951
Query: 446 SMRRFKNWLAKKNKPD------------THLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
FK W + + + + R L+++ L D+P+ V EAYL P ++
Sbjct: 952 ----FKEWWGRVQRGNDTEEESGTKWRKSFKRRFLKSIYLTADWPDPLVREAYLYPTVDE 1007
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ + WG P L LR F + WS ++VD L PI++++S R
Sbjct: 1008 SEEPFHWGFPRLSALRTFLHEELSWSISKVDDELTPIVQRVSLR 1051
>gi|50551183|ref|XP_503065.1| YALI0D20240p [Yarrowia lipolytica]
gi|49648933|emb|CAG81257.1| YALI0D20240p [Yarrowia lipolytica CLIB122]
Length = 1115
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 135/233 (57%), Gaps = 26/233 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR---TVYKNFFD 378
E Q+LLQLFG+PFI AP EAEAQCA+L + GVIT+DSD++LF + V+KNFF+
Sbjct: 822 ECQQLLQLFGIPFITAPTEAEAQCATLVNLDLVDGVITEDSDVFLFSSNPRMRVFKNFFN 881
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+V Y +I L R+ L+ LALL+GSDYT GL G+GPV+A+EILA+F +P
Sbjct: 882 SNKYVECYKTGEIEQTLNLERKDLVDLALLLGSDYTDGLPGIGPVSAMEILAEFK---AP 938
Query: 439 NQNYIVESMRRFKNWL-------AKKNKPDTHLT-------RKLRNVKLNDDFPNVSVIE 484
++ ++R FK+W A + K D R L + L+ FP+ +
Sbjct: 939 GKD----TLREFKDWWESQLVERANRGKSDNTSAFKSKFSKRFLSKLFLSASFPSEKIRL 994
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
YL+P ++ + WG P L GLR + + G N +D L+P++++++ +
Sbjct: 995 GYLEPSVDDDKTPFKWGHPSLVGLREYLGDTIGG--NSIDSLLLPVLQQMNAK 1045
>gi|324501186|gb|ADY40530.1| DNA repair protein RAD2 [Ascaris suum]
Length = 947
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 46/246 (18%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E QELL+L G+PF+V+PGEAEAQC LE QG+++DDSD+WLFGA TVYKN F++K
Sbjct: 498 ECQELLRLCGIPFVVSPGEAEAQCCELERLGLVQGIVSDDSDVWLFGASTVYKNMFNQKR 557
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS-PS----D 436
V +++ I LTR + +Q+ALL G DYTPGL +G VTALE++++F+ PS D
Sbjct: 558 RVQMFSSETIHKQLGLTRWETVQIALLSGGDYTPGLDNIGVVTALELISEFALPSEDNCD 617
Query: 437 SPNQNYIVESMRRFKNWLAKK--------------------------------NKPDTHL 464
Q + V ++R +WL + NK +T
Sbjct: 618 EEAQAFAV--LQRISDWLNGREESRNKEQQSTLSTDEHSSSTSKGQKRRSKEGNKFETAR 675
Query: 465 TRKLRN-VKLNDD------FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFG 517
KLR ++ N++ FP+ + EAY +P ++ + +K WGT L F + G
Sbjct: 676 RLKLRAIIERNNEKEVIKAFPSREIFEAYSRPLVDKSNEKPIWGTVKEKELEEFVRQRLG 735
Query: 518 WSQNRV 523
W Q+R+
Sbjct: 736 WDQDRL 741
>gi|195559286|ref|XP_002077347.1| GD20054 [Drosophila simulans]
gi|194202449|gb|EDX16025.1| GD20054 [Drosophila simulans]
Length = 259
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 102/144 (70%), Gaps = 7/144 (4%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QE L+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 5 ISQRMSIDCQEQLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 64
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 65 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 124
Query: 435 SDS-----PNQNYIVESMRRFKNW 453
D NQ+ +++++ +F++W
Sbjct: 125 QDGNGPGICNQS-VLQTLIKFRDW 147
>gi|118386483|ref|XP_001026360.1| XPG N-terminal domain containing protein [Tetrahymena thermophila]
gi|89308127|gb|EAS06115.1| XPG N-terminal domain containing protein [Tetrahymena thermophila
SB210]
Length = 1113
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 131/234 (55%), Gaps = 28/234 (11%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+ K + ++LL LFGVP++ AP EAEAQCA LE G+ITDDSD++LFG + +Y+
Sbjct: 751 IQDKFQQVRQLLLLFGVPWVEAPSEAEAQCAFLEQIKLVDGIITDDSDVFLFGGKNIYRG 810
Query: 376 FFDKKSHVLRY-TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
F K++ +RY I + R+KLI +AL +GSDYT G++GVG V A+EI F
Sbjct: 811 LFGKEADYVRYINGESIEKEMGVNRDKLIYMALFLGSDYTLGIKGVGIVNAMEICTAFEN 870
Query: 435 SDSPNQNYIVESMRRFKNWLAKKN----KPDTH---LTRKLRNVK-----------LNDD 476
+++++RFK W +K + P H ++ K +N K + ++
Sbjct: 871 ---------IDALKRFKVWASKADVLLEDPSIHYKNISLKEKNYKELHKNYKKHWEIPEE 921
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPI 530
FP+ VI AYL P+++ + + WG P L LR + N FGW+ + +L P+
Sbjct: 922 FPSQKVINAYLNPNVDKSDEAFQWGKPSLGLLRAYCQNIFGWNDEITNYSLKPL 975
>gi|116180814|ref|XP_001220256.1| hypothetical protein CHGG_01035 [Chaetomium globosum CBS 148.51]
gi|88185332|gb|EAQ92800.1| hypothetical protein CHGG_01035 [Chaetomium globosum CBS 148.51]
Length = 1765
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 141/296 (47%), Gaps = 55/296 (18%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
Q+ E + R AS + + RE Q+ E E + + D++
Sbjct: 775 QMAEEAEEHARFASQLNNKSQRENQQAY------------EQELRALRAQQKKDRRDADE 822
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V++ M+ E Q LL LFG+P+I AP EAEAQCA L N G++TDDSD +LFG VYK
Sbjct: 823 VTQVMVTECQALLTLFGIPYITAPMEAEAQCAELVHLNLVDGIVTDDSDTFLFGGTRVYK 882
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N F GL GVGPVTALEIL++F
Sbjct: 883 NMF--------------------AGNNSSPSPTSSAPTTPKGLPGVGPVTALEILSEF-- 920
Query: 435 SDSPNQNYIVESMRRFKNW---LAKKNKPDTH-----LTRKLRNVK-----LNDDFPNVS 481
P +N + E F++W + + +P RK R L FPN +
Sbjct: 921 ---PGKNGLSE----FRDWWQDIQNRGRPKDADAAFPFRRKFRKAHATKLFLPPGFPNPA 973
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V +AYL PD+++N + WG PDLDGLR+F N GW Q R D+ L+P+++ +++R
Sbjct: 974 VADAYLHPDVDSNTEPFQWGVPDLDGLRQFLMNTIGWGQERTDEVLVPVIRDMNKR 1029
>gi|328774021|gb|EGF84058.1| hypothetical protein BATDEDRAFT_2594, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 284
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 23/200 (11%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL +FG+P+IVA EAE+QCA L+ +G++TDDSD+++FG VYKN F + V
Sbjct: 108 LLFIFGIPYIVATTEAESQCAFLQKQGLVEGIVTDDSDVFVFGGEVVYKNMFTQTRSVEI 167
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
YT ++ L+REKLI LA L+GSDYTPGL G+GPVT++EIL ++ N +Y
Sbjct: 168 YTMDRLQEQLGLSREKLILLAYLLGSDYTPGLVGIGPVTSVEILNEWC-----NLDY--- 219
Query: 446 SMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDL 505
+K +L +KL + D FP++ V+ AY+ P ++ ++ WG PDL
Sbjct: 220 ------------SKGGRNLAKKL---DIPDGFPDLRVLNAYINPVVDQDLTNFTWGEPDL 264
Query: 506 DGLRRFAANKFGWSQNRVDQ 525
+G+R F +K WS VDQ
Sbjct: 265 EGIRHFLEHKLQWSHETVDQ 284
>gi|384249049|gb|EIE22531.1| hypothetical protein COCSUDRAFT_6698, partial [Coccomyxa
subellipsoidea C-169]
Length = 262
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 134/240 (55%), Gaps = 33/240 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ QELLQLFG+P+I+AP EAEAQCA L+ GV+TDD+D++LFGA+ VY++ F+ +
Sbjct: 4 DCQELLQLFGLPYIIAPSEAEAQCAWLDANGLVDGVVTDDNDVFLFGAKHVYRHIFENRK 63
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y D+ L ++ LI LALL+GSDYT G+ G+G V A+E + F D
Sbjct: 64 YVEEYRTEDVERELGLDQDGLIALALLLGSDYTEGVAGIGIVNAIETVKAFQKED----- 118
Query: 442 YIVESMRRFKNWLAKKNK-----------PDTH---------LTRKLRNVKLN----DDF 477
+R+F+ W+ ++ PD + RK RNV+ N F
Sbjct: 119 ----GLRKFREWVMNPDEAELLAAQEADPPDPYAGDDPEIAEYKRKHRNVRKNWELPASF 174
Query: 478 PNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P++ VIEAY K ++ + ++ G PD LR F KF W+ ++VD+ L P++K R
Sbjct: 175 PDIRVIEAYRKASVDDSKERFTHGRPDAQLLRAFCKEKFNWNADKVDEILEPVLKAYDAR 234
>gi|255070381|ref|XP_002507272.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
gi|226522547|gb|ACO68530.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
Length = 1108
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 132/264 (50%), Gaps = 64/264 (24%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
Q+LL LFGVP+++AP EAEAQCA + VIT+DSD +LFGA TVY+N F+ K +V
Sbjct: 805 QDLLTLFGVPYVIAPQEAEAQCAWMNSEGLVDAVITEDSDAFLFGASTVYRNVFNTKKYV 864
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYI 443
Y+ +I+ L R ++ +LALL+GSDYT G+ GVG V ALEI + FS D
Sbjct: 865 EVYSVENIQRDIGLKRAQMAELALLLGSDYTEGIPGVGIVNALEIASVFSGMD------- 917
Query: 444 VESMRRFKNWLAKKNKPDT--------------------------HL-TRKLRNVKLN-- 474
+ F+NW+ + PD HL + K +N+ L
Sbjct: 918 --GLTTFRNWVENGDLPDQVNRGNRCLAGSSLPKKHVVAKDGEGGHLVSDKEKNIDLKEG 975
Query: 475 --------------------------DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGL 508
+DFP+V+VIEAY KP ++++ L WG P+ + L
Sbjct: 976 EVANIYLQREIFKQKHQAARTRWILPNDFPSVAVIEAYAKPLVDSSKVHLEWGKPNFELL 1035
Query: 509 RRFAANKFGWSQNRVDQTLIPIMK 532
R F F W + D+ L P+++
Sbjct: 1036 RVFCLESFNWGIGKTDELLEPVIQ 1059
>gi|403347306|gb|EJY73073.1| hypothetical protein OXYTRI_05797 [Oxytricha trifallax]
Length = 1055
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 133/280 (47%), Gaps = 56/280 (20%)
Query: 305 ELGTDKKRRPYVSRK-MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
EL K Y S++ E + LL+L G+PF+ AP EAE+QCA LE+ GV+T+DSD
Sbjct: 739 ELEKTAKHFTYFSQENTQELKTLLRLCGIPFVQAPFEAESQCAFLEINGLVDGVVTEDSD 798
Query: 364 IWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPV 423
+ LFGAR VY+N FD+ +Y I L R+ LI++AL +GSDYT G++G+ V
Sbjct: 799 VLLFGARKVYRNIFDRNKFAEKYDMKIIEREMGLDRDDLIKMALFMGSDYTMGVRGIAAV 858
Query: 424 TALEILAKFSPSDSPNQNYIVESMRRFKNWL----------------------------- 454
A+EI+ F E + +FK W+
Sbjct: 859 NAIEIINSFQGD---------EGLEKFKQWVDIKQQIQDQAQKDSDEAGIVKKSQKQKLI 909
Query: 455 ---------AKKNKPDTHLTRKLRNVKLN--------DDFPNVSVIEAYLKPDINTNVQK 497
K +P+T + ++ + N DFP+ VI+AY P I+ + +K
Sbjct: 910 EALENALTDEDKERPETEIEKEYKEKHKNWRRHWEFPQDFPSNEVIKAYKDPSIDDSKEK 969
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
WGTP L+ FA K GW +DQ + K++ +R
Sbjct: 970 FTWGTPAFQELKSFAIMKLGWEGRDLDQYFNIVEKRMKER 1009
>gi|452824082|gb|EME31087.1| DNA excision repair protein ERCC-5 [Galdieria sulphuraria]
Length = 928
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 117/352 (33%), Positives = 179/352 (50%), Gaps = 59/352 (16%)
Query: 213 SLVKKKAKSDDVID--VDLTETSTSGFFDYGCDVIKSSTLEKDRDQ-----LLLERGKQT 265
SL K S+D+I VD + S S F D + S E+DRD+ +L K
Sbjct: 524 SLQVGKEDSEDMISSKVDEEKDSFSYFGDTQDTYFEESLDEEDRDREVSRDFILPDEK-- 581
Query: 266 RLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEA-Q 324
+ ++ +E +EL Q F L+ G+D ++ +M E +
Sbjct: 582 --LENLFQEFEKERRELRQEF---------------THLKSGSD-----IITDEMCEEIR 619
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 384
ELL++ G+P+I AP EAEAQCA +GV+T+DSD +LFGA+TV++N F+ K +V
Sbjct: 620 ELLRMLGIPYIQAPMEAEAQCAYFSQVGLVEGVVTEDSDAFLFGAKTVFRNIFEDKKYVE 679
Query: 385 RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIV 444
+Y DI Y L REKLI L+LL+GSDYT G+ GVG V A EI+ F PS
Sbjct: 680 QYEMEDIERYLGLNREKLILLSLLLGSDYTQGIHGVGVVNATEIMRAF-PS--------F 730
Query: 445 ESMRRFKNWLAKKNKPDTHLT-----------------RKL-RNVKLNDDFPNVSVIEAY 486
E + F +W + + + ++ RK+ RN ++D FPN V++AY
Sbjct: 731 EELIEFAHWANQLSLKEERISLDSEDPNFVKNEFFLKHRKMKRNWVIHDSFPNKHVVDAY 790
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
P ++T+ + P++ L F KFGW+ ++V + +IP++K R+
Sbjct: 791 RYPMVDTSSIEFHCQRPNIAQLVEFCRAKFGWNSDKVKKLVIPVLKAYDARN 842
>gi|281212257|gb|EFA86417.1| xeroderma pigmentosum group G family protein [Polysphondylium
pallidum PN500]
Length = 1515
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 127/242 (52%), Gaps = 41/242 (16%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART---VYKNF 376
+ E +LL LFG+PFI +P EAEAQCA L GV+T+DSD LFG + VY++
Sbjct: 1003 LRECHDLLSLFGIPFITSPTEAEAQCAELFALGLIDGVVTEDSDTLLFGKSSDMVVYRHL 1062
Query: 377 FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
F + +Y DI + R+ LI LA+L+G DYT G++G+G V A+EI+++F
Sbjct: 1063 FQQPE---KYCMSDIEKTIGVNRDDLINLAMLLGCDYTAGVKGIGIVNAMEIISEFD--- 1116
Query: 437 SPNQNYIVESMRRF--KNWLAKK------------------------NKPDTHLTRKLRN 470
+E +F K++ + K N+ L+N
Sbjct: 1117 ------TLEEFAKFIRKDYGSGKKSSRDKDKDGDKDKDENDEDLDIFNEERYRFKTLLKN 1170
Query: 471 VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPI 530
+KL D FP+ V A+ PD+N + ++ W PDLD LR+ +KFGW + +VD L+PI
Sbjct: 1171 IKLPDSFPSEQVRLAFQSPDVNLSSEEFTWSCPDLDSLRKLTRDKFGWDKLKVDNILLPI 1230
Query: 531 MK 532
++
Sbjct: 1231 LR 1232
>gi|385304582|gb|EIF48594.1| single-stranded dna cleaves single-stranded dna during nucleotide
excision repair [Dekkera bruxellensis AWRI1499]
Length = 577
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 117/196 (59%), Gaps = 28/196 (14%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+L+ Q+LL FG+PFI AP EAEAQCA L G++TDDSD +LFG +YKN F++
Sbjct: 367 ILDVQDLLSRFGIPFITAPMEAEAQCAELFGLKLVDGIVTDDSDCFLFGGSIIYKNMFNE 426
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
K+ V Y DI LTR+++I LAL++GSDYT GL+GVG VTA+EIL++F
Sbjct: 427 KNFVECYQLEDIARDMGLTRKQMIDLALMLGSDYTSGLKGVGKVTAVEILSEFG------ 480
Query: 440 QNYIVESMRRFKNW--------LAKKNKPDTHLTRKLR------NVKLNDDFPNVSVIEA 485
+ F+NW + K N D RK+R ++ L DFP+ +VI+A
Sbjct: 481 ------DLVTFRNWWLEYQGGKIDKSN--DNKXRRKIRKQMXKADLFLGRDFPDPAVIBA 532
Query: 486 YLKPDINTNVQKLAWG 501
YL P+++ + K++ G
Sbjct: 533 YLHPEVDHDXNKVSMG 548
>gi|298711922|emb|CBJ48609.1| DNA repair enzyme [Ectocarpus siliculosus]
Length = 1835
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 127/243 (52%), Gaps = 30/243 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E +LL+LFGVP++VAP EAEAQC LE G +TDDSD + FG R VYKN F +
Sbjct: 1307 EVMDLLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSDRK 1366
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y PD + ++++ LALL+GSDYT G++GVG V A+E++ F P + +
Sbjct: 1367 FVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAF-PLEGKGAH 1425
Query: 442 YIVESMRRFKNW--------------LAKKNKPDT----------HLT-RKLRNV-KLND 475
+ + +FK W L K+ HL R RN + D
Sbjct: 1426 H---GLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVPD 1482
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
FP+ VI AY P ++ + + +W PD+DGL GW +++ D L+P++K++
Sbjct: 1483 GFPSEEVINAYNNPQVDRSEEPFSWAAPDVDGLMALCQRVLGWDRDQSDGLLMPMVKELD 1542
Query: 536 QRS 538
+ S
Sbjct: 1543 RGS 1545
>gi|108706747|gb|ABF94542.1| XPG I-region family protein, expressed [Oryza sativa Japonica Group]
Length = 1477
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 133/281 (47%), Gaps = 92/281 (32%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E+ N GV+TDDSD++LFGAR VYK
Sbjct: 852 VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYK 911
Query: 375 NFFDKKSHVLRY---------------TAPDIRYYFE-------LTREKLIQLALLVGSD 412
N FD + +V Y + +I +F+ LTRE+LI++A+L+GSD
Sbjct: 912 NIFDDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSD 971
Query: 413 YTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL---- 468
YT G+ G+G V A+E+ F D +++F+ W+ PD L KL
Sbjct: 972 YTEGISGIGIVNAIEVAHAFPEED---------GLQKFREWV---ESPDPTLLGKLGMES 1019
Query: 469 -------------------------------------------------RNVKLN----D 475
RNV N
Sbjct: 1020 GSSSKKKKSGRNHSDGKGNSLEPEYAKGSDDSQSSNETQRIKEIFMSKHRNVSKNWHIPS 1079
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKF 516
FP+ +VI AY+ P ++ + + +WG PD LR+ + +F
Sbjct: 1080 TFPSEAVINAYISPQVDDSTEPFSWGRPDSGLLRKRSNVEF 1120
>gi|313246225|emb|CBY35158.1| unnamed protein product [Oikopleura dioica]
Length = 846
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 121/217 (55%), Gaps = 14/217 (6%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A E+L LFG APGEAEAQCA E+ N TQG ITDD D +LFG RTV K
Sbjct: 620 DAAEMLTLFGCGVFFAPGEAEAQCAEFEMTNITQGTITDDGDTFLFGGRTVIKGL----- 674
Query: 382 HVLRYTAPDIRYYF---ELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L P ++Y E +RE LI LA L GSDY G++ VG TA++IL +F S
Sbjct: 675 -TLGNMVP-VKYDIQETEFSREFLIALAQLTGSDYCNGIKSVGSKTAIKILEEFDDRRSE 732
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTH---LTRKLRNVKLNDDFPNVSVIEAYLKPDINT-N 494
+ + + + ++ N K T+ L KL+ + ++ DFP+ AYL P++
Sbjct: 733 DPHLTLNTFSKWWNTHHKSLTTGTNGIPLRAKLKKLNIDADFPSDRSRHAYLHPNVEKLK 792
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
+K+ + PDL+ +R++AA K W + +DQ +IP++
Sbjct: 793 DKKIRFTVPDLNRIRQYAARKLEWQEEAIDQHIIPLL 829
>gi|74141150|dbj|BAE35888.1| unnamed protein product [Mus musculus]
Length = 644
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 93/142 (65%), Gaps = 9/142 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 499 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 558
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 559 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 613
Query: 440 QNYIVESMRRFKNWL--AKKNK 459
+ ++ + +F W A+ NK
Sbjct: 614 RG--LDPLLKFSEWWHEAQNNK 633
>gi|156395868|ref|XP_001637332.1| predicted protein [Nematostella vectensis]
gi|156224443|gb|EDO45269.1| predicted protein [Nematostella vectensis]
Length = 250
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +ML E+QELL+LFGVPF+V+P EAEAQCA L++ T G ITDDSD++LFG R VYK
Sbjct: 121 VSTEMLNESQELLRLFGVPFLVSPMEAEAQCAFLDMTGQTDGTITDDSDVFLFGGRRVYK 180
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
N F++ H YT DI L+R K+I+LA + GSDYT G+QG+G V+A+E+L +FS
Sbjct: 181 NIFNQNKHAECYTCEDIDKGLALSRSKMIKLAFVTGSDYTEGIQGLGAVSAMEVLHEFS 239
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW+LLE GKPV +E+L+ KVLAV
Sbjct: 1 MGVKGLWQLLEPVGKPVTLESLQGKVLAV 29
>gi|393908823|gb|EFO27494.2| hypothetical protein LOAG_00986 [Loa loa]
Length = 880
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 32/236 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ Q+LL++ G+P+++APGEAEAQC LE G+I+DDSD+W FGA VYKN F++K
Sbjct: 498 DCQDLLRICGIPYVIAPGEAEAQCCELERLGLVHGIISDDSDVWSFGAAMVYKNMFNQKR 557
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP----SDS 437
+ Y+ I L+R + +Q+ALL G DYT GL GVG V ALE++++F+ D+
Sbjct: 558 RLQMYSMETIHNQLGLSRWEAVQIALLSGGDYTSGLGGVGVVAALELISEFATVSRQVDT 617
Query: 438 PNQNYIVESMRRFKNWLAK-------------------KNKPDTHLTRKLRNVKLNDD-- 476
E++ R WL + + K TR+L+ +L +
Sbjct: 618 EPSEQAFENLHRISAWLNRHGSWNDLPPSCGSNNEQDMQKKKSMENTRRLKLRRLIEKNN 677
Query: 477 -------FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQ 525
FP+ V AY KP ++ +++K W + + L F K GW + +++
Sbjct: 678 ATETLEAFPSREVFNAYAKPLVDNSMEKPKWRNINTEELESFVWEKLGWDRKHLEK 733
>gi|312067080|ref|XP_003136574.1| hypothetical protein LOAG_00986 [Loa loa]
Length = 882
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 32/236 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ Q+LL++ G+P+++APGEAEAQC LE G+I+DDSD+W FGA VYKN F++K
Sbjct: 500 DCQDLLRICGIPYVIAPGEAEAQCCELERLGLVHGIISDDSDVWSFGAAMVYKNMFNQKR 559
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP----SDS 437
+ Y+ I L+R + +Q+ALL G DYT GL GVG V ALE++++F+ D+
Sbjct: 560 RLQMYSMETIHNQLGLSRWEAVQIALLSGGDYTSGLGGVGVVAALELISEFATVSRQVDT 619
Query: 438 PNQNYIVESMRRFKNWLAK-------------------KNKPDTHLTRKLRNVKLNDD-- 476
E++ R WL + + K TR+L+ +L +
Sbjct: 620 EPSEQAFENLHRISAWLNRHGSWNDLPPSCGSNNEQDMQKKKSMENTRRLKLRRLIEKNN 679
Query: 477 -------FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQ 525
FP+ V AY KP ++ +++K W + + L F K GW + +++
Sbjct: 680 ATETLEAFPSREVFNAYAKPLVDNSMEKPKWRNINTEELESFVWEKLGWDRKHLEK 735
>gi|384493818|gb|EIE84309.1| hypothetical protein RO3G_09019 [Rhizopus delemar RA 99-880]
Length = 816
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 103/146 (70%), Gaps = 2/146 (1%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK ++ +M+ + QELL+LFG+P+IV+P EAEAQCA+LE +G ITDDSD++LF
Sbjct: 646 DKGNSDDITDQMIGDIQELLKLFGIPYIVSPMEAEAQCAALERLKLIEGTITDDSDVFLF 705
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
GA VYKN F+++ V Y DI L+R KLIQLA L+GSDYT G+ GVGPV A+E
Sbjct: 706 GASRVYKNMFNQQRFVECYRTEDIEREMMLSRNKLIQLAYLLGSDYTEGIPGVGPVAAME 765
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNW 453
IL +F PSD+ + + I +++FK+W
Sbjct: 766 ILDEF-PSDTQDDDDIDGPLKKFKDW 790
>gi|313217057|emb|CBY38243.1| unnamed protein product [Oikopleura dioica]
gi|313224508|emb|CBY20298.1| unnamed protein product [Oikopleura dioica]
Length = 538
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 119/214 (55%), Gaps = 8/214 (3%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A E+L LFG APGEAEAQCA E+ N TQG ITDD D +LFG R V K
Sbjct: 312 DAAEMLTLFGCGVFFAPGEAEAQCAEFEMTNITQGTITDDGDTFLFGGRIVIKGLTLGNM 371
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
++Y + E +RE LI LA L GSDY G++ VG TA++IL +F S + +
Sbjct: 372 VPVKYDVQET----EFSREFLIALAQLTGSDYCNGIKSVGSKTAIKILEEFDDRRSEDPH 427
Query: 442 YIVESMRRFKNWLAKKNKPDTH---LTRKLRNVKLNDDFPNVSVIEAYLKPDINT-NVQK 497
+ + ++ N K T+ L KL+ + ++ DFP+ AYL P++ +K
Sbjct: 428 LTLNTFSKWWNTHHKSLTTGTNGIPLRAKLKKLNIDADFPSDRSRHAYLHPNVEKLKDKK 487
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
+ + PDL+ +R++AA K W + +DQ +IP++
Sbjct: 488 IRFTVPDLNRIRQYAARKLEWQEQAIDQHIIPLL 521
>gi|124800975|ref|XP_001349570.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
gi|3845138|gb|AAC71842.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
Length = 1516
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 32/226 (14%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL FG+P+I +P EAEAQC+ L N+ +I+DDSD+ +F +TV KNFF+KK V
Sbjct: 1218 LLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKNFFNKKKTVEV 1277
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF------------- 432
Y I L +E+LI ++LL G DYT G+ G+G V ALEI+ F
Sbjct: 1278 YEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIV 1337
Query: 433 -SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLN----DDFPNVSVIEAYL 487
+P ++N E +++F N TH +N KLN ++FP+ V + +
Sbjct: 1338 SNPFRKIDKNMYNEEIQQFLN---------TH-----KNYKLNWIFPNNFPDREVYKCFK 1383
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
P + T+++K W PD+ + +F S+ +V L PI++K
Sbjct: 1384 YPKVCTDIKKFEWHVPDIKSITKFLHKTTNISEEKVLNVLNPILQK 1429
>gi|221487998|gb|EEE26212.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 2004
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 22/223 (9%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+ FGVPFI APGEAEA A L N VI+DDSD +FGAR +Y+NFF+ K V
Sbjct: 1432 LLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVFGAREIYRNFFENKKSVEM 1491
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y A I + L +++LI LA+L+G DYT G++G+G V A+E+L + PS +E
Sbjct: 1492 YEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAVEVLRAY-PS--------LE 1542
Query: 446 SMRRFKNWLAKK-----NKPDTHLTRKLRNVKLN--------DDFPNVSVIEAYLKPDIN 492
S+R F+ W D+ RK + N DFP+ V +A+ P ++
Sbjct: 1543 SLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSPEVFDAFESPLVD 1602
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + +W PD+D + + G ++ V L+P +++ +
Sbjct: 1603 RSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYT 1645
>gi|237832503|ref|XP_002365549.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
gi|211963213|gb|EEA98408.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
Length = 2004
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 22/223 (9%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+ FGVPFI APGEAEA A L N VI+DDSD +FGAR +Y+NFF+ K V
Sbjct: 1432 LLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVFGAREIYRNFFENKKSVEM 1491
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y A I + L +++LI LA+L+G DYT G++G+G V A+E+L + PS +E
Sbjct: 1492 YEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAVEVLRAY-PS--------LE 1542
Query: 446 SMRRFKNWLAKK-----NKPDTHLTRKLRNVKLN--------DDFPNVSVIEAYLKPDIN 492
S+R F+ W D+ RK + N DFP+ V +A+ P ++
Sbjct: 1543 SLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSPEVFDAFESPLVD 1602
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + +W PD+D + + G ++ V L+P +++ +
Sbjct: 1603 RSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYT 1645
>gi|221508520|gb|EEE34089.1| DNA-repair protein xp-G, putative [Toxoplasma gondii VEG]
Length = 2004
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 22/223 (9%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+ FGVPFI APGEAEA A L N VI+DDSD +FGAR +Y+NFF+ K V
Sbjct: 1432 LLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVFGAREIYRNFFENKKSVEM 1491
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y A I + L +++LI LA+L+G DYT G++G+G V A+E+L + PS +E
Sbjct: 1492 YEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAVEVLRAY-PS--------LE 1542
Query: 446 SMRRFKNWLAKK-----NKPDTHLTRKLRNVKLN--------DDFPNVSVIEAYLKPDIN 492
S+R F+ W D+ RK + N DFP+ V +A+ P ++
Sbjct: 1543 SLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSPEVFDAFESPLVD 1602
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + +W PD+D + + G ++ V L+P +++ +
Sbjct: 1603 RSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYT 1645
>gi|47201249|emb|CAF87424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 175
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
+ELL+LFGVPF++AP EAEAQCA+L+ + T G ITDDSD+WLFG R VYKNFF + +V
Sbjct: 56 EELLRLFGVPFLIAPMEAEAQCAALDRADQTHGTITDDSDVWLFGGRHVYKNFFSQNKYV 115
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
+ D++ L R KLI LA L+GSDYT G+ GVG VT +E+L +F+
Sbjct: 116 EYFQYSDLQNALGLDRTKLINLAYLLGSDYTEGVAGVGYVTGMEVLNEFT 165
>gi|449019441|dbj|BAM82843.1| probable excision repair protein ERCC5 [Cyanidioschyzon merolae
strain 10D]
Length = 1117
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 127/249 (51%), Gaps = 31/249 (12%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V+ +M + + LLQL G+P+I A EAEAQCA L+ V+T+DSD +LFGA VY+
Sbjct: 763 VTEQMFADTKRLLQLLGIPYIEAAMEAEAQCAFLDRAGIVDAVVTEDSDAFLFGASRVYR 822
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF-- 432
+ F+ +V Y I L+R+KLI L LL+GSDY+ G+ GVG V A EI+ F
Sbjct: 823 HIFEDSKYVEEYEMNRIERNMGLSRDKLICLGLLLGSDYSDGVYGVGIVNATEIVEAFCR 882
Query: 433 -----SPSDSPNQNYIVESMRRFKNWL---------AKKNKPDT--------HLTRKLRN 470
P SP + ++ F+ WL A + P+ H+ K
Sbjct: 883 DPDPACPDTSPEREPF-RGLQDFREWLDAVHLGDDPASVSDPEPRRAAFKKLHINMKRNW 941
Query: 471 VKLNDDFPNVSVIEAYLKPDINTN-----VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQ 525
L+ FPN VIEA+L+P ++T+ + PD LR F + FGW +++Q
Sbjct: 942 NLLDKTFPNRHVIEAFLRPQVDTSWLHRRRELFPNCGPDPVALRAFCHDLFGWDSAKLEQ 1001
Query: 526 TLIPIMKKI 534
L P+++
Sbjct: 1002 ALGPVVQAF 1010
>gi|221053197|ref|XP_002257973.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
gi|193807805|emb|CAQ38510.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
Length = 1431
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 25/224 (11%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL +FG+P++ +P EAEAQC+ L N+ +I+DDSD+ +F +TV KNFF+KK V
Sbjct: 1110 LLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKNFFNKKKTVEV 1169
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y I L +++LI L+LL G DYT G+ GVG V ALEI+ F P+ E
Sbjct: 1170 YERKLIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKAF-PT--------FE 1220
Query: 446 SMRRFKNWLAK------------KNKPDTHLTRKLRNVKLN----DDFPNVSVIEAYLKP 489
+++ K ++ N+ + +N KLN +FP+ V + + P
Sbjct: 1221 DLKKLKEIVSNPFRDLSKDDKYFNNEEVQRFLKTHKNYKLNWIFPKNFPDREVYKCFKYP 1280
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
+ T+++K W P+L + RF + ++ ++ L PI++K
Sbjct: 1281 KVCTDIEKFQWHLPNLTHISRFLQKETNIAEEKIYNVLNPILQK 1324
>gi|401409161|ref|XP_003884029.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
gi|325118446|emb|CBZ53997.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
Length = 1924
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 22/223 (9%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+ FGVPF+ APGEAEA A N VI+DDSD +FGAR +Y+NFF+ K V
Sbjct: 1438 LLRAFGVPFVTAPGEAEATAAYFTAQNLADAVISDDSDALVFGAREIYRNFFENKKSVEM 1497
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y A I + L +++LI LA+L+G DYT G++G+G V A+E+L + PS ++
Sbjct: 1498 YEASFIAHKLGLDQQQLILLAMLLGCDYTLGVKGIGIVNAVEVLRAY-PS--------LD 1548
Query: 446 SMRRFKNWLAKK-----NKPDTHLTRKLRNVKLN--------DDFPNVSVIEAYLKPDIN 492
++R F+ W D+ RK + N DFP+ V +A+ P ++
Sbjct: 1549 ALRAFRAWAEAPWTLGIEAADSAEVRKYKEAHKNYRLQWLFPHDFPSPEVFDAFESPLVD 1608
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + +W PD++ + + G ++ V L+P +K+ +
Sbjct: 1609 RSREPFSWAVPDVEAIVSIMTHAGGLRRSEVLDCLLPAVKRYT 1651
>gi|358341292|dbj|GAA49005.1| DNA excision repair protein ERCC-5 [Clonorchis sinensis]
Length = 1013
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 117/224 (52%), Gaps = 39/224 (17%)
Query: 318 RKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF 377
R + EAQ LLQLFG+PFIV+P EAEAQC +L+ V +DDSD+W FGAR V ++ F
Sbjct: 604 RCVEEAQNLLQLFGMPFIVSPEEAEAQCVALQQSGLVDLVASDDSDVWPFGARLVCRHLF 663
Query: 378 -----DKKSHVLR--------YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVT 424
D K V R YT D++ L +++LALL GSDYTPG+Q VGPVT
Sbjct: 664 AGGAVDTKPKVTRKAPRVPSQYTLDDVQRTVGLNTMNILRLALLCGSDYTPGVQNVGPVT 723
Query: 425 ALEILAKFSPSDSPNQNY--------------IVESMRRFKNWLAKKNK----------P 460
A+EIL +F D ++ +VE + RF W +K
Sbjct: 724 AVEILNEFGEIDDNASDFTLVGGTETADLAVRVVEPLERFTAWYRAASKVVAEGDAKSLN 783
Query: 461 DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI--NTNVQKLAWGT 502
+ + +K + FP+ ++EAYL+P++ + V+ A+ T
Sbjct: 784 TSQVRKKWLKFCPPEGFPDPRIVEAYLRPNVLRHGGVECCAYTT 827
>gi|260825215|ref|XP_002607562.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
gi|229292910|gb|EEN63572.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
Length = 162
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 80/112 (71%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+E+QELL+LFG+P++ +P EAEAQCA L+ T+G ITDDSD+WLFG R VYKNFF ++
Sbjct: 39 VESQELLRLFGIPYVQSPTEAEAQCAFLDQSKQTEGTITDDSDVWLFGGRQVYKNFFSQQ 98
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
+ + D+ + R +LI ALL GSDYT G+QGVG V A+E+L +F
Sbjct: 99 RDMEVFKYKDVVSQLAMDRSRLINFALLTGSDYTEGIQGVGKVLAMEVLQEF 150
>gi|156093896|ref|XP_001612986.1| DNA repair endonuclease [Plasmodium vivax Sal-1]
gi|148801860|gb|EDL43259.1| DNA repair endonuclease, putative [Plasmodium vivax]
Length = 1473
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 25/228 (10%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL +FG+P++ +P EAEAQC+ L N+ +I+DDSD+ +F +TV KNFF++K V
Sbjct: 1141 LLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKNFFNRKKTVEV 1200
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y I L +++LI L+LL G DYT G+ GVG V ALEI+ F E
Sbjct: 1201 YERKLIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKAFP---------TFE 1251
Query: 446 SMRRFKNWLAK------------KNKPDTHLTRKLRNVKLN----DDFPNVSVIEAYLKP 489
+++ K ++ N+ + +N KLN ++FP+ V + P
Sbjct: 1252 DLKKLKEIVSNPFRDLSQDDKYFHNEEVKRFLQTHKNYKLNWIFPNNFPDREVYRCFKYP 1311
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ T++QK W P+L + +F ++ ++ L PI++K R
Sbjct: 1312 KVCTDIQKFQWHLPNLSHITKFLNKATNIAEEKISNVLNPILQKYDVR 1359
>gi|402588539|gb|EJW82472.1| XPG domain-containing protein [Wuchereria bancrofti]
Length = 604
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 82/114 (71%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ Q LL++ G+PF++APGEAEAQC LE QG+I+DDSD+WLFGA VYKN F++K
Sbjct: 473 DCQNLLRICGIPFVIAPGEAEAQCCELEKLGLVQGIISDDSDVWLFGAAVVYKNMFNQKR 532
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
+ Y+ IR L+R + IQ+ALL G DYT GL+GVG V ALE++++F+ +
Sbjct: 533 RLQMYSMESIRNQLGLSRWEAIQIALLSGGDYTNGLEGVGVVAALELISEFATA 586
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 106 NIYIMGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
NI MG+ GLW++LE +PV +E+LE K LA+ I
Sbjct: 2 NITGMGIQGLWQVLEPVAEPVTLESLEGKRLAIDI 36
>gi|390371157|dbj|GAB65038.1| DNA repair endonuclease [Plasmodium cynomolgi strain B]
Length = 1505
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 14/221 (6%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL +FG+P++ +P EAEAQC+ L N+ +I+DDSD+ +F +TV KNFF++K V
Sbjct: 1175 LLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKNFFNRKKTVEV 1234
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ-NYIV 444
Y I L +++LI L+LL G DYT G+ GVG V ALEI+ F D + IV
Sbjct: 1235 YERKHIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKAFPTFDDLKKLKEIV 1294
Query: 445 ESMRR--------FKNWLAKKNKPDTHLTRKLRNVKLN----DDFPNVSVIEAYLKPDIN 492
+ R F N N+ + + +N K N +FP+ V + + P +
Sbjct: 1295 SNPFRDLSKDDKYFHNEEV-HNEEVKNFLKSHKNYKFNWIFPKNFPDREVYKCFKYPKVC 1353
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
T++QK W P+L + +F ++ ++ L PI++K
Sbjct: 1354 TDIQKFQWHFPNLSHITKFLHKATNIAEEKIFNVLNPILQK 1394
>gi|68076243|ref|XP_680041.1| DNA repair endonuclease [Plasmodium berghei strain ANKA]
gi|56500911|emb|CAH98970.1| DNA repair endonuclease, putative [Plasmodium berghei]
Length = 1262
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 36/235 (15%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL FG+P+I AP EAEAQC+ L N+ +I+DDSD+ +F +T+ KNFF+KK V
Sbjct: 946 LLDFFGIPYIQAPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKNFFNKKKTVEV 1005
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS-------- 437
Y I L ++ LI +++L G DYT G+ GVG V ALEI+ F D
Sbjct: 1006 YEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGVGIVNALEIVKAFPTFDDLKILKEIV 1065
Query: 438 ----------PNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLN----DDFPNVSVI 483
++N + +++F N TH RN KLN +FP+ V
Sbjct: 1066 SNPLRDIYQENDENNYSDEIKKFLN---------TH-----RNYKLNWIFPKNFPDKEVY 1111
Query: 484 EAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ + P + +++K+ W P+++ + + S++++ L PI+KK + ++
Sbjct: 1112 KCFKYPKVCKDIKKIEWHAPNMNKIIHYLNKTTNISEDKIFNVLDPILKKYNVKT 1166
>gi|70953099|ref|XP_745672.1| DNA repair endonuclease [Plasmodium chabaudi chabaudi]
gi|56526070|emb|CAH76802.1| DNA repair endonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 1281
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 112/216 (51%), Gaps = 8/216 (3%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL FG+P+I +P EAEAQC+ L N+ +I+DDSD+ +F +T+ KNFF+KK V
Sbjct: 964 LLNFFGIPYIQSPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKNFFNKKKTVEV 1023
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN--QNYI 443
Y I L ++ LI +++L G DYT G+ G+G V ALE++ F D + +
Sbjct: 1024 YEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGIGIVNALEVVKAFPTFDDLKILKEIV 1083
Query: 444 VESMRRFKNWLAKKNKPD--THLTRKLRNVKLN----DDFPNVSVIEAYLKPDINTNVQK 497
+R + N D H +N KLN +FP+ V + + P + +++K
Sbjct: 1084 SNPLRHLYQENDENNYSDEIKHFLNTHKNYKLNWIFPKNFPDREVYKCFKYPKVCKDIKK 1143
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
W P+++ + + S+ ++ L PI+KK
Sbjct: 1144 FEWHPPNMNNIIHYLNKTTNISEEKIFNVLDPILKK 1179
>gi|290992099|ref|XP_002678672.1| predicted protein [Naegleria gruberi]
gi|284092285|gb|EFC45928.1| predicted protein [Naegleria gruberi]
Length = 985
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 121/263 (46%), Gaps = 48/263 (18%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
A++LL GVP++V+P EA+AQC L N VIT+DSD++LFGA VY+N F H
Sbjct: 670 AKDLLTYLGVPYLVSPSEADAQCGFLSKHNLVDAVITEDSDLFLFGANCVYRNVFGSTRH 729
Query: 383 VLR-----YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS-- 435
+ + Y +I TR LIQ+ALL+GSDYT G+ VGPVTA +++ F+P
Sbjct: 730 IDKNIIEEYRMDNIFKVLGFTRTNLIQIALLLGSDYTDGVHNVGPVTATQVVDAFNPEEK 789
Query: 436 --DSPNQNYIVESMRRFKNWL--------------AKKNKPDTHLTRKLRNVKLNDDFPN 479
D N + + ++ FK W+ KK + + + FP+
Sbjct: 790 ELDEDNLEEVTQGLKDFKLWVEDDTFNMGRTQKSWGKKGDFQFNYKGSKKKFIFPEGFPD 849
Query: 480 VSVIEAYLKPDINTNVQKLAWGT-----------------------PDLD--GLRRFAAN 514
+I+AY KP ++ ++ W P L+ G F
Sbjct: 850 SKIIDAYTKPQVDDSLSDFVWADIDSDPSTQSSSSQVTASSSSTDPPKLNWQGFYTFCLE 909
Query: 515 KFGWSQNRVDQTLIPIMKKISQR 537
+ S+ VD + PI+ + +R
Sbjct: 910 RMNMSREEVDSYIQPILTERKKR 932
>gi|328857380|gb|EGG06497.1| hypothetical protein MELLADRAFT_36164 [Melampsora larici-populina
98AG31]
Length = 288
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 89/135 (65%), Gaps = 2/135 (1%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ Q +L+LFG+P++++P EAEAQCA L G+ITDDSD++LFG VYKN F++
Sbjct: 131 DIQSMLRLFGIPYVISPMEAEAQCAELLKKGLVDGIITDDSDVFLFGGTRVYKNMFNQNK 190
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
V Y D+ L+R++LIQLA L+GSDYT GL GVGPVTA+EIL++F D
Sbjct: 191 FVECYLMNDLEKELGLSRQRLIQLAYLLGSDYTEGLAGVGPVTAMEILSEF--DDEHLTV 248
Query: 442 YIVESMRRFKNWLAK 456
++S+ FK W K
Sbjct: 249 AGLDSLINFKRWWMK 263
>gi|82914773|ref|XP_728841.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485391|gb|EAA20406.1| XPG I-region, putative [Plasmodium yoelii yoelii]
Length = 1274
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 112/216 (51%), Gaps = 8/216 (3%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL LFG+P+I +P EAEAQCA L N+ +I+DDSD+ +F +T+ KNFF+KK V
Sbjct: 936 LLDLFGIPYIQSPCEAEAQCAYLNNNNYCDAIISDDSDVIVFSGKTIIKNFFNKKKTVEV 995
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN--QNYI 443
Y I L ++ LI +++L G DYT G+ GVG V ALEI+ F + + +
Sbjct: 996 YEKNLIERKLGLYQDDLINISMLCGCDYTIGVHGVGIVNALEIIKAFPTFEDLKFLKEIV 1055
Query: 444 VESMRRFKNWLAKKNKPD--THLTRKLRNVKLN----DDFPNVSVIEAYLKPDINTNVQK 497
+R + N D +N KLN +FP+ V + P + +++K
Sbjct: 1056 SNPLRHIYQENYENNYSDEIKIFLNSHKNYKLNWIFPKNFPDKEVYNCFKNPKVCKDIKK 1115
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
+ W P+++ + + S+ ++ L PI+KK
Sbjct: 1116 IEWHVPNMNKIIYYLNKATNISKEKIFNVLDPILKK 1151
>gi|156084190|ref|XP_001609578.1| Rad2 endonuclease [Babesia bovis T2Bo]
gi|154796830|gb|EDO06010.1| Rad2 endonuclease, putative [Babesia bovis]
Length = 1002
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 103/203 (50%), Gaps = 27/203 (13%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL LFGVPFIVAP EAEAQCA L GVI+DDSD FGA+ V+KNF+ +
Sbjct: 692 LLDLFGVPFIVAPSEAEAQCAHLNNTGLCFGVISDDSDTLAFGAKRVFKNFYSGNVFEV- 750
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y A I + L R ++ LA+L G DYTPG++G+G V ALE++ F D
Sbjct: 751 YVADRILHELGLGRNEIALLAILCGCDYTPGVRGIGVVNALEVIKAFPTFD--------- 801
Query: 446 SMRRFKNWLA---------------KKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
+ F+ W K+ ++H+ ++ + DFPN L P
Sbjct: 802 DLYEFRRWATSDCDITTVTQDTCPLKQAYKESHVNYRM-HWSFGSDFPNREAYNLLLSPV 860
Query: 491 INTNVQKLAWGTPDLDGLRRFAA 513
+++ K W TPD DG+ RF +
Sbjct: 861 VSSTF-KPKWRTPDYDGIMRFMS 882
>gi|403223884|dbj|BAM42014.1| uncharacterized protein TOT_040000390 [Theileria orientalis strain
Shintoku]
Length = 784
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 25/230 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ Q LL+LFGVP+++AP EAE+QCA + VI+DDSD +FGAR + KNF++
Sbjct: 480 DTQALLELFGVPYLIAPSEAESQCAYMNKKGDCYAVISDDSDALVFGARCLLKNFYNDNV 539
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
L YTA IR + R++L +A++ G DYT G++G+G V ALE++ +
Sbjct: 540 FEL-YTAERIRKELGIGRKQLALIAVICGCDYTNGVRGIGVVNALEVIKAYPK------- 591
Query: 442 YIVESMRRFKNW------LAKKNKPDTHLTRKLRNVKLN--------DDFPNVSVIEAYL 487
E + FK+W + + L + + +N DFPN + +L
Sbjct: 592 --FEDLHEFKHWATSDCSVESATSDECQLRSEYKKAHINYRVHWTFSSDFPNREAYDLFL 649
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+P T+ L+W PD L F + Q +V Q L + + SQ+
Sbjct: 650 RP-TTTDEYHLSWKKPDFKPLLEFMLKRSSLPQEQVKQCLDLLYVRRSQQ 698
>gi|397584929|gb|EJK53123.1| hypothetical protein THAOC_27498, partial [Thalassiosira oceanica]
Length = 252
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 28/225 (12%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+L G+P++ +P EAEAQCA+LE GV+T+DSDI++FG + VYK R
Sbjct: 15 LLRLCGIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKGH--------R 66
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
A + R+ G DYT G++GVG V +E+L F P+ + +
Sbjct: 67 ARAGPGQGQARRPRDA-------PGRDYTDGVRGVGIVNGMEVLRAFPPAADGVEG-VHG 118
Query: 446 SMRRFKNWLAK--------KNKPDTHLTRKLRNVKLN----DDFPNVSVIEAYLKPDINT 493
+ RF++W+ P+ K R+ + DFP+ +I AYL+P ++T
Sbjct: 119 GLSRFRDWMDGIGDVLPDDATPPEVAFHGKHRSARARWAAPADFPSRGIITAYLRPAVDT 178
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ + W PDLD L+RF A+ GW + + + P++K + S
Sbjct: 179 SRTRFTWARPDLDALQRFCADTLGWEREETARVVGPVLKVLESTS 223
>gi|399217224|emb|CCF73911.1| unnamed protein product [Babesia microti strain RI]
Length = 895
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 101/182 (55%), Gaps = 20/182 (10%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+LF +P I AP EAEAQCA L + GVI+DDSD +FGA V KNFF+K+ ++
Sbjct: 616 LLKLFKIPIIFAPSEAEAQCAQLNIEQSVYGVISDDSDTLVFGAIRVVKNFFNKQRNLEL 675
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
Y + +I+ LTREKL +ALL G DYT G++G+G V ALEI+ + D
Sbjct: 676 YQSQNIKQTLGLTREKLALIALLCGCDYTSGVKGIGIVNALEIIEAYPTFD--------- 726
Query: 446 SMRRFKNWLAK--KNKPDTHLTR---KLRNVKLND------DFPNVSVIEAYLKPDINTN 494
+ F++W N D+ R K+R+ K + DFPN+ + P ++ N
Sbjct: 727 DLYHFRDWATNIYSNTNDSCEIRNRYKVRHEKCRNGWIFHADFPNIHAYNLLMSPKVDLN 786
Query: 495 VQ 496
++
Sbjct: 787 IE 788
>gi|429329613|gb|AFZ81372.1| DNA-repair protein xp-G, putative [Babesia equi]
Length = 839
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 29/230 (12%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
Q++L+LFG+P+IVAP EAE+QCA L VITDDSD +FGA V KNF++ S++
Sbjct: 535 QKMLKLFGIPYIVAPSEAESQCAHLNESGACYAVITDDSDALVFGANRVLKNFYN--SNI 592
Query: 384 LR-YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNY 442
YT+ + + R++L +A++ G DYT G++GVG + ALEI+ + P N
Sbjct: 593 FEVYTSERLFSQLGIGRQELALIAIICGCDYTTGIKGVGIINALEIIKAY-----PTFND 647
Query: 443 IVESMRRFKNWLA---------------KKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
+ E F+ W KK + H+ ++ + DFPN+ L
Sbjct: 648 LYE----FRKWATSDCDLETAISDPCPLKKAYKEAHINYRIH-WTFSSDFPNLEAYNLLL 702
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P+I TN KL+W TP++ + F + V+ + +M K SQ+
Sbjct: 703 HPNI-TNEFKLSWVTPNIPAILTFMEKNSTLPKEEVECCINTLMTKKSQQ 751
>gi|323456781|gb|EGB12647.1| hypothetical protein AURANDRAFT_4733, partial [Aureococcus
anophagefferens]
Length = 238
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 73/111 (65%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ LL+L GVP++VAP EAEAQCA+LE +GV+TDDSD + FGAR VYKN FD +
Sbjct: 128 DTMHLLRLLGVPYVVAPMEAEAQCAALEAAGLCEGVVTDDSDAFCFGARRVYKNIFDDRK 187
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
+V Y A D L R++ LALL+G DY G+ GVG V A+E+L F
Sbjct: 188 YVEAYYASDCARDLRLGRDEFCALALLLGGDYDNGVAGVGVVNAMEVLQAF 238
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI-LYFTQ 145
MGV GLWKLL G+ + VETLE+ LA+ + ++ TQ
Sbjct: 1 MGVQGLWKLLAPCGRRISVETLEHTTLAIDVSIWLTQ 37
>gi|196004776|ref|XP_002112255.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
gi|190586154|gb|EDV26222.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
Length = 247
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELL LFG+P+IV+P EAEAQCA L+ N T G ITDDSDI+LFG R +Y+
Sbjct: 119 VSNEMYSECQELLSLFGIPYIVSPMEAEAQCAVLDFTNQTDGTITDDSDIFLFGGRNIYR 178
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
F + Y + I+ L R+K+I LA L+GSDYT G++ VG V A+E+L+ F
Sbjct: 179 YVFRESKLAEFYDSQRIQRLMGLDRKKMITLAYLLGSDYTDGIKNVGIVMAMELLSTFG 237
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 28/31 (90%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE++G+P+ +E+LENK+LAV I
Sbjct: 1 MGVKGLWKLLESAGQPITLESLENKILAVDI 31
>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
Length = 835
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 31/215 (14%)
Query: 312 RRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
+ PY + +LL+ FGVP+IVAP EAE+QCA + VI+DDSD +FGA+
Sbjct: 524 KNPYYD----DVHKLLEHFGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKC 579
Query: 372 VYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
+ KNF++ K L YT IR + R++L +A++ G DYT G++G+G V ALE++
Sbjct: 580 LLKNFYNDKVFEL-YTLDRIRRELGIGRKQLALIAIICGCDYTTGVKGIGIVNALEVIKA 638
Query: 432 FSPSDSPNQNYIVESMRRFKNWLA---------------KKNKPDTHLTRKLRNVKLNDD 476
+ D + F++W +K+ H+ ++ N + D
Sbjct: 639 YPTFD---------DLYDFRDWATNDCNLKSAVADECPIRKSYKIAHINYRV-NWTFSPD 688
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRF 511
FPN +L P + N KL W P ++ L F
Sbjct: 689 FPNREAYNMFLNPSVTDNY-KLQWSQPKMESLTSF 722
>gi|392885946|ref|NP_491891.2| Protein XPG-1 [Caenorhabditis elegans]
gi|351063324|emb|CCD71482.1| Protein XPG-1 [Caenorhabditis elegans]
Length = 820
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
QE L G+P+I +PGEAEAQC LE GV++DDSD+W FGA+ VY++ F K V
Sbjct: 473 QEFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHMFSKNRRV 532
Query: 384 LRY-----TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS--D 436
RY D F L RE I +ALL G DY GL VG + ALE+++++ D
Sbjct: 533 QRYGEQTTANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALELVSEYVECRID 592
Query: 437 SPNQNYIVES--MRRFKNWLA-------KKNKPDTHLTRKLRNVKLNDDFPNVSV----- 482
+ N ++E+ MR KN + K + R+V +D N+
Sbjct: 593 NTNDLKVIENRIMRLLKNVESLFLTAPDDKRVASRNAMMLRRHVTEANDMENIKCVCSNQ 652
Query: 483 --IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW 518
+ AYL P ++++ +KL W ++ +RR + W
Sbjct: 653 DAVHAYLHPIVDSSSEKLRWRQMNIPLIRRILHQRLQW 690
>gi|268568094|ref|XP_002640157.1| C. briggsae CBR-XPG-1 protein [Caenorhabditis briggsae]
Length = 886
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 111/238 (46%), Gaps = 26/238 (10%)
Query: 304 LELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
L D +R P + R + QE L G+P+I APGEAEAQC LE GV++DDSD
Sbjct: 459 LNYDDDNERTPELYRDL---QEFLTNAGIPWIEAPGEAEAQCVELEKLGLVDGVVSDDSD 515
Query: 364 IWLFGARTVYKNFFDKKSHVLRY---TAP--DIRYYFELTREKLIQLALLVGSDYTPGLQ 418
+W FG + VY++ F K V RY TA D F L RE I +A+L G DY PGL
Sbjct: 516 VWAFGVKHVYRHMFAKNRRVQRYGEQTAANRDNCKLFCLQREDYISIAILAGGDYCPGLV 575
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNK-----PD------------ 461
VG + ALE++++F + I R L K + PD
Sbjct: 576 KVGAIGALELVSEFVEKRNDQSETIDIIENRILQLLEKAGQLFLSSPDEKRFNSRKALIL 635
Query: 462 -THLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW 518
H+T + + N + AYL P ++ + +KL W ++ +R+ + W
Sbjct: 636 KRHVTEANERELIENVCSNKDAVHAYLHPTVDDSSEKLRWRQMNIPLIRQILHQRLQW 693
>gi|390365680|ref|XP_003730870.1| PREDICTED: uncharacterized protein LOC100889325 [Strongylocentrotus
purpuratus]
Length = 1543
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 15/227 (6%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
K R + S + E QELL+L GVP I + GEAEA CA+L G +T+D D +L+GA
Sbjct: 132 KASRSHFSGWLKECQELLELMGVPCIQSKGEAEAMCAALNSAGIVDGCMTEDGDAFLYGA 191
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI 428
R VY+N V Y DI +L R +L+ LA+L+G DY P G+ GVG A+
Sbjct: 192 RIVYRNLNMATGKVDCYRMDDIETKLDLDRGRLVALAILLGCDYLPKGVPGVGKEVAMRF 251
Query: 429 LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLN----DDFPNVSVIE 484
+ S V+ + F++W + LT + R+V+ + FPN VI+
Sbjct: 252 MKSLPSS--------VDPLNLFQDW--RGGCASACLTNEERDVRKKSVRVEGFPNQDVIQ 301
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
+L+ W P L L++F K W + ++P+M
Sbjct: 302 EFLRNKERPPTHHSEWRRPLLLHLQQFNLVKMEWPIEYTQEKVVPLM 348
>gi|302845188|ref|XP_002954133.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
gi|300260632|gb|EFJ44850.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
Length = 254
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 12/142 (8%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
GVP + P AEAQCA LE+ GV+TDD+D++LFGAR VY++ F+ K +V Y D
Sbjct: 99 GVPTVSEPAAAEAQCAFLEVSGLVDGVVTDDNDVFLFGARHVYRHIFENKKYVEEYQMSD 158
Query: 391 IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRF 450
+ LTRE+L ++ALL+GSDYT G G+G V A+E++ F P +E ++RF
Sbjct: 159 VERELGLTRERLAEMALLLGSDYTEGCGGIGIVNAVEVVQAF-PG--------LEGLQRF 209
Query: 451 KNWLAKKNKPDTHLTRKLRNVK 472
++W+ PD + R ++
Sbjct: 210 RSWV---ESPDVGIVAAARQLQ 228
>gi|340056397|emb|CCC50728.1| putative DNA repair protein RAD2 [Trypanosoma vivax Y486]
Length = 753
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 121/265 (45%), Gaps = 19/265 (7%)
Query: 287 GVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCA 346
GV +V+ G A A G R V ++LE ELL G+PFI++P EA+AQCA
Sbjct: 444 GVKSLVSTGVAPAS----SFGVRPDVRRVVPFELLEIVELLDCCGIPFIISPNEADAQCA 499
Query: 347 SLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLA 406
L V T+DSD+ + GA TV + FF V+ Y D+ + + L+ LA
Sbjct: 500 YLNSQRLVDAVFTEDSDVIVHGAPTVLRGFFSGNRQVVAYHQSDL-LTCGVDKSVLVALA 558
Query: 407 LLVGSDYTPGLQGVGPVTALEILAKF--SPSDSPNQNYIVESMRRFKNWLA----KKNKP 460
+L+G DY G+ G+ + AL ++A +P S +N V M W + ++ +
Sbjct: 559 ILLGCDYAEGVHGLSLLEALHVVASVWRTPCGSSVENGAVHVMEMLSRWSSAVEQRRIQW 618
Query: 461 DTHLT--------RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFA 512
D T K + DFP + V+EA+ P+I+ + PD LR FA
Sbjct: 619 DEECTLLQFYKRCTKWFALDFPVDFPQLHVLEAFFSPNIDADPTPFKCAAPDWGRLRAFA 678
Query: 513 ANKFGWSQNRVDQTLIPIMKKISQR 537
+ N Q L K+ ++R
Sbjct: 679 GTHGLLASNFCRQLLDTAQKECTKR 703
>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
Ankara]
gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
Length = 899
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 27/207 (13%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
+LL FGVP+IVAP EAE+QCA + VI+DDSD +FGA+ + KNF++ K
Sbjct: 593 HKLLDHFGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFYNDKVFE 652
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYI 443
L Y IR + R++L +A++ G DYT G++G+G V ALE++ + P+
Sbjct: 653 L-YKLDRIRRELGIGRKQLALIAIICGCDYTNGVKGIGIVNALEVIKAY-PT-------- 702
Query: 444 VESMRRFKNWLA---------------KKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLK 488
E + F++W +K+ H+ ++ N + DFPN +L
Sbjct: 703 FEDLYDFRDWATSDLSVKGAVTDECPIRKSYKLAHVNYRV-NWTFSPDFPNREAYNMFLN 761
Query: 489 PDINTNVQKLAWGTPDLDGLRRFAANK 515
P + T+ KL W PD++ L F K
Sbjct: 762 PSV-TDSYKLEWRPPDVNSLISFMGRK 787
>gi|424513647|emb|CCO66269.1| DNA excision repair protein Rad2 [Bathycoccus prasinos]
Length = 1311
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 87/132 (65%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E QELL L G+P++VAP EAEA+CA L GV T+DSD++LFGA V++N F+
Sbjct: 877 EVQELLMLLGIPYVVAPEEAEAECAHLNRTGKVDGVFTNDSDVFLFGATLVFRNAFENTK 936
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+ Y + I L RE++IQLA+L+GSDYT G+ G+G V A+E+LA FS +D N
Sbjct: 937 AIQMYKSSRIEKQLGLNRERMIQLAMLLGSDYTVGIDGIGIVNAMEVLAGFSDADKENGA 996
Query: 442 YIVESMRRFKNW 453
+E +++FK W
Sbjct: 997 ESLEGLKQFKKW 1008
>gi|168010775|ref|XP_001758079.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690535|gb|EDQ76901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1718
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 11/207 (5%)
Query: 250 LEKDRDQLLL-------ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCA 302
L KDR+++L+ ER +R + + +E +ELL G+ E
Sbjct: 971 LAKDREEMLMHEAGLLAEREALSRDEAELQAVFEKEQEELLA--GIDKERELLLEEEAEL 1028
Query: 303 SLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
+++ V+ +M E QELLQ+FG+P+++AP EAEAQCA L+ GV+TDD
Sbjct: 1029 RELQKKNERNADSVTSEMFAECQELLQMFGLPYVIAPMEAEAQCAFLDAEKLVDGVVTDD 1088
Query: 362 SDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVG 421
D++LFG R VYKN FD + +V Y D+ L R+KLI++ALL+GSDYT G+ G+G
Sbjct: 1089 VDVFLFGGRNVYKNIFDDRKYVETYYMKDVETELGLDRDKLIRMALLLGSDYTEGVSGIG 1148
Query: 422 PVTALEILAKFSPSDS-PNQNYIVESM 447
V A+E++ F D N +VES+
Sbjct: 1149 IVNAIEVVNAFDEDDGLKNFKEMVESV 1175
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 469 RNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLI 528
+N K+ + FP+ +V+ Y P + + Q +WG PDL+ LR+F +F W + + D+ L+
Sbjct: 1275 KNWKIPESFPSEAVVAEYKSPRVEKSKQGFSWGRPDLEALRKFCLERFSWPKEKADELLL 1334
Query: 529 PIMKK 533
++K+
Sbjct: 1335 SVLKE 1339
>gi|67937671|gb|AAY83298.1| unknown [Babesia sp. WA1]
Length = 954
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 384
E+L LFG+P++ AP EAEAQC L VI+DDSD FGAR + KNFF+ + +
Sbjct: 649 EMLDLFGIPYMHAPSEAEAQCCFLNQSGEVYAVISDDSDTLPFGARRILKNFFNSRVFEI 708
Query: 385 RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIV 444
Y + I+ L++E+L LA++ G DYT G+ G+G V ALE++ + P N
Sbjct: 709 -YLSSRIKSELGLSQEQLALLAIICGCDYTDGVCGIGIVNALEVIKAY-----PTFN--- 759
Query: 445 ESMRRFKNW------LAKKNKPDTHLTRKLRNVKLN--------DDFPNVSVIEAYLKPD 490
+ F+ W L K + + + +N DFPN+ +LKP
Sbjct: 760 -DLYAFRAWATTDVDLKNATKDECPIREAYKKAHINYRVHWKFSCDFPNLEAYTLFLKPR 818
Query: 491 INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
I+ Q W P + +++F N ++D L
Sbjct: 819 IDKRSQ-FKWTPPQVPEIKQFMTNNSSLPPEQIDACL 854
>gi|209878979|ref|XP_002140930.1| DNA-repair protein UVH3 [Cryptosporidium muris RN66]
gi|209556536|gb|EEA06581.1| DNA-repair protein UVH3, putative [Cryptosporidium muris RN66]
Length = 1017
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 30/201 (14%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+ + LLQ FG+P+I +PGEAEAQ + L GV++DDSD LFGA+ VY+NFF
Sbjct: 746 FQVRMLLQAFGIPWIDSPGEAEAQASILTQLGLCDGVLSDDSDCILFGAKCVYRNFF-CG 804
Query: 381 SHVLRYTAPDIRYYFEL-TREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+ V +Y DI + + +++ LALL+G DYT G+ GVGPV ALEIL + PN
Sbjct: 805 TTVEKYVKVDIENFLGIKNHDQMCILALLLGCDYTVGVSGVGPVNALEILKAY-----PN 859
Query: 440 QNYIVESMRRFKNW---LAKKNKPDTHLTRKLRNV----------------KLNDDFPNV 480
+ M + K W LA + D + + N+ DFP+
Sbjct: 860 ----LSDMEKLKQWSTNLANRYDSDDGINLQTDNIVQQEFKRVHSNYRYQWSFPSDFPSD 915
Query: 481 SVIEAYLKPDINTNVQKLAWG 501
+VI A P ++ +++ +G
Sbjct: 916 AVINAIRNPTVDKSMEPFIFG 936
>gi|405969706|gb|EKC34660.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 955
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 18/213 (8%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--DK 379
E E+L GVP++ +PGEAEA CA+L +T+D D +L+GARTVY+NF K
Sbjct: 117 ECCEMLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDAFLYGARTVYRNFTMNTK 176
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEILAKFSPSDSP 438
HV Y D+ L+REKL+ +ALL+G DY P G+ GVG A++++ P
Sbjct: 177 DPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPGVGVERAIKMMNAL-----P 231
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+ N ++RF+ W + P++ + V++ + VI+ + + T
Sbjct: 232 SSNV----LKRFETW---SSMPESCC---VDTVEVYIRRKALLVIQEFFQEKKKTPRHIS 281
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
W P + L+ F NK W + ++P++
Sbjct: 282 EWCRPSMSKLQVFCLNKLEWPVEYTVEKVLPLI 314
>gi|256070941|ref|XP_002571800.1| xp-G/rad2 DNA repair endonuclease family [Schistosoma mansoni]
gi|353228641|emb|CCD74812.1| putative xp-G/rad2 DNA repair endonuclease family [Schistosoma
mansoni]
Length = 991
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 14/153 (9%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
++ + +R + EAQ+LL LFG PF+V+P EAEAQC +L+ V +DDSD+W FG
Sbjct: 648 RQAQSTTTRCISEAQDLLHLFGFPFVVSPEEAEAQCVALQRHGLVDLVASDDSDVWPFGV 707
Query: 370 RTVYKNFF--------DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVG 421
+ V ++ F ++ Y +++ LT E +++L LL GSDYT G+ VG
Sbjct: 708 KLVCRHLFGTGGGDNLKSTTNPSIYKLDEVKRKLGLTIENILRLTLLCGSDYTHGIDQVG 767
Query: 422 PVTALEILAKFSPSDSPNQNYIVESMRRFKNWL 454
PVTA+EIL++F D + N NWL
Sbjct: 768 PVTAIEILSEFDVGDDDSLNC------EINNWL 794
>gi|308473689|ref|XP_003099068.1| CRE-XPG-1 protein [Caenorhabditis remanei]
gi|308267722|gb|EFP11675.1| CRE-XPG-1 protein [Caenorhabditis remanei]
Length = 828
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 117/256 (45%), Gaps = 29/256 (11%)
Query: 304 LELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
L D ++ P + R + QE L G+P+I APGEAEAQC LE GV++DDSD
Sbjct: 459 LNYDDDNEKTPELYRDL---QEFLTNAGIPWIEAPGEAEAQCVELERLGLVDGVVSDDSD 515
Query: 364 IWLFGARTVYKNFFDKKSHVLRY---TAPDIR--YYFELTREKLIQLALLVGSDYTPGLQ 418
+W FG + VY++ F K V RY TA + F L RE I +ALL G DY+ GL
Sbjct: 516 VWAFGVKHVYRHMFAKNRRVQRYGEKTAANRENCRLFCLQREDFISIALLSGGDYSSGLV 575
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNK-----PD------------ 461
VG + ALE++++F + + +R L K PD
Sbjct: 576 KVGAIGALELVSEFVECRTDQLENLELVEKRILKLLEKVGHLFLTSPDEKRSVGRKAMIL 635
Query: 462 -THLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW-- 518
H+T + + N + AYL P ++ + +K W ++ +R+ + W
Sbjct: 636 RRHVTEANEKDLIENVCSNHDAVHAYLHPLVDGSSEKFRWRQMNIPLIRQILHQRLQWPD 695
Query: 519 -SQNRVDQTLIPIMKK 533
SQ+ +Q +K
Sbjct: 696 RSQHHEEQNSFDAFRK 711
>gi|71745604|ref|XP_827432.1| DNA repair protein RAD2 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831597|gb|EAN77102.1| DNA repair protein RAD2, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 746
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 39/301 (12%)
Query: 228 DLTETST--SGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQL 285
+ TETS S F +G V+ S L KD ++LL S IT + E L+
Sbjct: 395 NCTETSCGLSEFNPFGGVVVPSGNLRKDEKEVLLN-------TSVIT------SSETLET 441
Query: 286 FGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQC 345
G+P V S E +K+ P+ ++L ELL G+P++++P EA+AQC
Sbjct: 442 TGIPLKVPS-------VSREHVREKQVVPF---ELLGIVELLDCCGIPYVLSPNEADAQC 491
Query: 346 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQL 405
A L V T+DSD+ + GA V + FF K HV+ Y D+ + + L+ L
Sbjct: 492 AFLNEQRVVDAVFTEDSDVIVHGAPVVLRGFFSKGRHVVAYRQSDL-LACGVDKVVLVAL 550
Query: 406 ALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMR-RFKNWLA---KKNKP- 460
ALL+G DY G+ G+ + +L ++A + + E +R +W + ++ P
Sbjct: 551 ALLLGCDYAEGVNGLSLLESLHVIAATWRQTTNSVEGGAEQVRDMLSSWCSAVRRRRIPW 610
Query: 461 --DTHLTRKLRN------VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFA 512
D LTR RN ++L D FP V++AY P +NT+ + PD LR FA
Sbjct: 611 GEDVPLTRFYRNYVKWSTLQLADSFPESHVVDAYFNPTVNTDTRPFVCAAPDWTKLRLFA 670
Query: 513 A 513
+
Sbjct: 671 S 671
>gi|115474331|ref|NP_001060762.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|75162699|sp|Q8W5R1.1|GENL2_ORYSJ RecName: Full=Flap endonuclease GEN-like 2; AltName: Full=OsSEND-1;
AltName: Full=Single-strand DNA endonuclease 1
gi|16923283|dbj|BAB72003.1| single-strand DNA endonuclease-1 [Oryza sativa Japonica Group]
gi|113622731|dbj|BAF22676.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|222639760|gb|EEE67892.1| hypothetical protein OsJ_25722 [Oryza sativa Japonica Group]
Length = 641
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 114/238 (47%), Gaps = 37/238 (15%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN-FFDKK 380
EA+ L G+P + EAEAQCASL+L + G T DSD +LFGARTVY++ F +
Sbjct: 126 EAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDVFIGEG 185
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI R LI LA+L+GSDY+ G+ G GP TA ++ S
Sbjct: 186 GYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVK------SVGD 239
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVS----------------VIE 484
N I++ + L+ K K K++D P S VI
Sbjct: 240 NLILDQI------LSNGVKATRKCKGKNSGNKVDDMCPKASSCEVGMTQDSDGQFRDVIN 293
Query: 485 AYLKPDINT----NVQKLAWGTPDL-DGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
AYL+P ++ VQ++ P L L++ F WS + DQ ++P KI++R
Sbjct: 294 AYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILP---KIAER 348
>gi|218200332|gb|EEC82759.1| hypothetical protein OsI_27479 [Oryza sativa Indica Group]
Length = 632
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 114/238 (47%), Gaps = 37/238 (15%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN-FFDKK 380
EA+ L G+P + EAEAQCASL+L + G T DSD +LFGARTVY++ F +
Sbjct: 117 EAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDVFIGEG 176
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI R LI LA+L+GSDY+ G+ G GP TA ++ S
Sbjct: 177 GYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVK------SVGD 230
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVS----------------VIE 484
N I++ + L+ K K K++D P S VI
Sbjct: 231 NLILDQI------LSNGVKATRKCKGKNSGNKVDDMCPKASSCEVGMTQDSDGQFRDVIN 284
Query: 485 AYLKPDINT----NVQKLAWGTPDL-DGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
AYL+P ++ VQ++ P L L++ F WS + DQ ++P KI++R
Sbjct: 285 AYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILP---KIAER 339
>gi|261331631|emb|CBH14625.1| DNA repair protein RAD2, putative [Trypanosoma brucei gambiense
DAL972]
Length = 746
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 39/301 (12%)
Query: 228 DLTETST--SGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQL 285
+ TETS S F +G V+ S L KD ++LL S IT + E L+
Sbjct: 395 NCTETSCGLSEFNPFGGVVVPSRNLRKDEKEVLLN-------TSVIT------SSETLET 441
Query: 286 FGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQC 345
G+P V S E +K+ P+ ++L ELL G+P++++P EA+AQC
Sbjct: 442 TGIPLKVPS-------VSREHVREKQVVPF---ELLGIVELLDCCGIPYVLSPNEADAQC 491
Query: 346 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQL 405
A L V T+DSD+ + GA V + FF K HV+ Y D+ + + L+ L
Sbjct: 492 AFLNEQRVVDAVFTEDSDVIVHGAPVVLRGFFSKGRHVVAYRQSDL-LACGVDKVVLVAL 550
Query: 406 ALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMR-RFKNWLA---KKNKP- 460
ALL+G DY G+ G+ + +L ++A + + E +R +W + ++ P
Sbjct: 551 ALLLGCDYAEGVNGLSLLESLHVIAATWRQTTNSVEGGAEQVRDMLSSWCSAVRRRRIPW 610
Query: 461 --DTHLTRKLRN------VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFA 512
D LTR RN ++L D FP V++AY P +NT+ + PD LR FA
Sbjct: 611 GEDVPLTRFYRNYVKWSTLQLADSFPESHVVDAYFNPTVNTDTRPFVCAEPDWTKLRLFA 670
Query: 513 A 513
+
Sbjct: 671 S 671
>gi|66356946|ref|XP_625651.1| XPG, DNA excision repair protein, flap endonuclease [Cryptosporidium
parvum Iowa II]
gi|46226699|gb|EAK87678.1| XPG, DNA excision repair protein, flap endonuclease [Cryptosporidium
parvum Iowa II]
Length = 1147
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 27/223 (12%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+ G+P+I +PGEAEAQ + L N GV++DDSD +FGA+ +++NFF S V
Sbjct: 886 LLKALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSGNS-VEM 944
Query: 386 YTAPDIRYYFELTR-EKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIV 444
Y ++ Y + + E+ LA+L+G DYT G+ G+GPV A+E+L + +
Sbjct: 945 YDLNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKAYPE---------L 995
Query: 445 ESMRRFKNWLAKKNKPDTH-----------LTRKLRNVKLN----DDFPNVSVIEAYLKP 489
E M F+NW K + ++ R N + + DFP I A P
Sbjct: 996 EDMILFQNWSMNKFQDKSNDLINDTFERAEFKRNHSNYRHSWVFPPDFPCFDAIHAMKNP 1055
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+I +N K +G D + N + +V + PI+K
Sbjct: 1056 NIISNF-KPTFGKIDKNSTIELITNNTNLTHEKVSLIIDPIIK 1097
>gi|34558672|gb|AAQ75078.1| RAD2 [Cryptosporidium parvum]
Length = 1147
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 27/223 (12%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+ G+P+I +PGEAEAQ + L N GV++DDSD +FGA+ +++NFF S V
Sbjct: 886 LLKALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSGNS-VEM 944
Query: 386 YTAPDIRYYFELTR-EKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIV 444
Y ++ Y + + E+ LA+L+G DYT G+ G+GPV A+E+L + +
Sbjct: 945 YDLNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKAYPE---------L 995
Query: 445 ESMRRFKNWLAKKNKPDTH-----------LTRKLRNVKLN----DDFPNVSVIEAYLKP 489
E M F+NW K + ++ R N + + DFP I A P
Sbjct: 996 EDMILFQNWSMNKFQDKSNDLINDTFERAEFKRNHSNYRHSWVFPPDFPCFDAIHAMKNP 1055
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+I +N K +G D + N + +V + PI+K
Sbjct: 1056 NIISNF-KPTFGKIDKNSTIELITNNTNLTHEKVSLIIDPIIK 1097
>gi|67589751|ref|XP_665434.1| RAD2 [Cryptosporidium hominis TU502]
gi|54656123|gb|EAL35205.1| RAD2 [Cryptosporidium hominis]
Length = 1158
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 27/223 (12%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL+ G+P+I +PGEAEAQ + L N GV++DDSD +FGA+ +++NFF S V
Sbjct: 897 LLKALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSGNS-VEM 955
Query: 386 YTAPDIRYYFELTR-EKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIV 444
Y ++ Y + + E+ LA+L+G DYT G+ G+GPV A+E+L + +
Sbjct: 956 YDLNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKAYPE---------L 1006
Query: 445 ESMRRFKNWLAKKNKPDTH-----------LTRKLRNVKLN----DDFPNVSVIEAYLKP 489
E M F+NW K + ++ R N + + DFP I A P
Sbjct: 1007 EDMILFQNWSMNKFQDKSNDLINDTFERAEFKRNHSNYRHSWVFPPDFPCFDAIHAMKNP 1066
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+I +N K +G D + N + +V + PI+K
Sbjct: 1067 NIISNF-KPTFGKIDKNSTIELITNNTNLTHEKVSLIIDPIIK 1108
>gi|341885112|gb|EGT41047.1| hypothetical protein CAEBREN_21721 [Caenorhabditis brenneri]
Length = 833
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 26/238 (10%)
Query: 304 LELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
L D + P + R + QE L G+P+I APGEAEAQC LE GV++DDSD
Sbjct: 463 LNYDGDDDKTPELYRDL---QEFLTNAGIPWIEAPGEAEAQCVELERLGLVDGVVSDDSD 519
Query: 364 IWLFGARTVYKNFFDKKSHVLRY---TAPDIR--YYFELTREKLIQLALLVGSDYTPGLQ 418
+W FG + VY++ F K V RY T + + F L RE + +ALL G DY+ GL
Sbjct: 520 VWAFGVKHVYRHMFSKNRKVQRYGERTTANRKNCNLFCLEREDYVSIALLSGGDYSSGLY 579
Query: 419 GVGPVTALEILAKFSPS---DSPNQNYIVESMRRFKNWLAK--KNKPDT----------- 462
VG + ALE++++F + N + + + + R N + PD
Sbjct: 580 KVGAIGALELVSEFVECRIDKTENLDLVEQRIIRLLNKVHNLFLTPPDAKRDVSRKAMML 639
Query: 463 --HLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW 518
H+T + N + AYL P ++ + +K W + +R+ + W
Sbjct: 640 RRHVTEANEKELIESVCSNHDAVHAYLHPLVDASSEKFRWRQMSIPLIRQILNQRLQW 697
>gi|341882846|gb|EGT38781.1| hypothetical protein CAEBREN_21263 [Caenorhabditis brenneri]
Length = 809
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 26/238 (10%)
Query: 304 LELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
L D + P + R + QE L G+P+I APGEAEAQC LE GV++DDSD
Sbjct: 436 LNYDGDDDKTPELYRDL---QEFLTNAGIPWIEAPGEAEAQCVELERLGLVDGVVSDDSD 492
Query: 364 IWLFGARTVYKNFFDKKSHVLRYTAPDIR-----YYFELTREKLIQLALLVGSDYTPGLQ 418
+W FG + VY++ F K V RY F L RE + +ALL G DY+ GL
Sbjct: 493 VWAFGVKHVYRHMFSKNRKVQRYGERTTANRENCKLFCLEREDYVSIALLSGGDYSSGLY 552
Query: 419 GVGPVTALEILAKFSPS---DSPNQNYIVESMRRFKNWLAK--KNKPDT----------- 462
VG + ALE++++F + N + + + + R N + PD
Sbjct: 553 KVGAIGALELVSEFVECRIDKTENLDLVEQRIIRLLNKVHNLFLTPPDAKRDVSRKAMML 612
Query: 463 --HLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW 518
H+T + N + AYL P ++ + +K W + +R+ + W
Sbjct: 613 RRHVTEANEKELIESVCSNHDAVHAYLHPLVDASSEKFRWRQMSIPLIRQILNQRLQW 670
>gi|255539481|ref|XP_002510805.1| conserved hypothetical protein [Ricinus communis]
gi|223549920|gb|EEF51407.1| conserved hypothetical protein [Ricinus communis]
Length = 586
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 376
SR + EA+ L G+ + + EAEAQCA L + G + DSD++LFGARTVY++
Sbjct: 120 SRMIKEAKILGLALGISCLDSLEEAEAQCALLNSESLCDGCFSSDSDVFLFGARTVYRDI 179
Query: 377 -FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
HV+ Y DI R LI LALL+GSDY+ G++G+GP +A +I+
Sbjct: 180 CLGDGGHVVCYEMADIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV------ 233
Query: 436 DSPNQNYIVESMRRFKNWLAKKNKPDTHLTR-----KLRNVKLNDDFPN-----VSVIEA 485
S + +++ + AKK K T+ NV +D + VI+A
Sbjct: 234 KSVGDHNVLQQIASGGLSFAKKTKASKKQTQLKSFGPESNVNGSDKISERQNQFLQVIDA 293
Query: 486 YLKP-----DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
YLKP D +T + LA L++ A FGWS D+ ++P KI++R
Sbjct: 294 YLKPKCHSADSDTVYRVLAQPPFQCAKLQQLCARFFGWSSEITDEYILP---KIAER 347
>gi|51092043|gb|AAT94435.1| RE62451p [Drosophila melanogaster]
Length = 932
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 855 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 914
Query: 375 NFFDKKSHVLRYTAPDI 391
NFF + HV+ + A I
Sbjct: 915 NFFAQNKHVMEFRAEQI 931
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKL+E GKPVPVETLE K+LAV I
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDI 31
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMAL--------PPPSVSREVD 84
A+R+ ++K ++ AD++++ LL++L +++++ LGKN L PP + E D
Sbjct: 89 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 148
Query: 85 MFELPPAPAQTVQDEEEDT 103
+F+LP PA +VQD ++++
Sbjct: 149 LFKLPELPAASVQDNQDES 167
>gi|156045904|ref|XP_001589507.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980]
gi|154693624|gb|EDN93362.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1188
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL +E + R AST+ + +E + E E + + D++
Sbjct: 836 QLAIEAEEHARFASTLNNKSEKENHDSY------------EKELKALRSQQKKDRRDADE 883
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS M+ E Q LL+LFG+P+I AP EAEAQCA L G++TDDSDI+LFG VYK
Sbjct: 884 VSHIMITECQALLRLFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDIFLFGGTRVYK 943
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
N F+ V Y D+ L+R++LI +A L+GSDYT
Sbjct: 944 NLFNSNKLVECYLLSDLEKELSLSRDQLISIAHLLGSDYT 983
>gi|449330042|gb|AGE96307.1| DNA repair protein rad2 [Encephalitozoon cuniculi]
Length = 562
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+SR + + +L++F +P++ AP EA+ QC + N GVIT+D+D+ L+G TVY+N
Sbjct: 385 ISRVLGLVKSVLEVFNIPYVDAPMEADGQCGFMCHNNVVDGVITEDNDVLLYGG-TVYRN 443
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
FF K + +Y+ I +L R+ LI L+ L+GSDYT G++G+GPV ALE + K S
Sbjct: 444 FFRKDREIEKYSLDRIERELQLDRKNLITLSYLLGSDYTDGVKGIGPVKALEAIRKGS 501
>gi|85014439|ref|XP_955715.1| DNA repair protein [Encephalitozoon cuniculi GB-M1]
gi|19171409|emb|CAD27134.1| similarity to DNA repair protein RAD2 (fragment) [Encephalitozoon
cuniculi GB-M1]
Length = 562
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+SR + + +L++F +P++ AP EA+ QC + N GVIT+D+D+ L+G TVY+N
Sbjct: 385 ISRVLGLVKSVLEVFNIPYVDAPMEADGQCGFMCHNNVVDGVITEDNDVLLYGG-TVYRN 443
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
FF K + +Y+ I +L R+ LI L+ L+GSDYT G++G+GPV ALE + K S
Sbjct: 444 FFRKDREIEKYSLDRIERELQLDRKNLITLSYLLGSDYTDGVKGIGPVKALEAIRKGS 501
>gi|303390841|ref|XP_003073651.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
gi|303302798|gb|ADM12291.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
Length = 558
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+ R M +++L++F + ++ AP EA+AQC + N GVIT+D+D+ L+G TVY+N
Sbjct: 381 ICRVMRLIKDILEVFNISYVEAPSEADAQCGFMCRNNTVDGVITEDNDVLLYGG-TVYRN 439
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
FF + + +Y+ I+ L R+ LI+L+ L+GSDYT G++G+GPV ALE + K S
Sbjct: 440 FFRRDRGIEKYSLERIKKELNLDRKNLIELSYLLGSDYTLGVKGIGPVKALEAVRKGS 497
>gi|397513474|ref|XP_003827038.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Pan paniscus]
gi|397513476|ref|XP_003827039.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Pan paniscus]
gi|397513478|ref|XP_003827040.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan paniscus]
Length = 908
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GARTVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GARTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|114576279|ref|XP_001136636.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan
troglodytes]
gi|410034836|ref|XP_003949810.1| PREDICTED: flap endonuclease GEN homolog 1 [Pan troglodytes]
gi|410218742|gb|JAA06590.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410255580|gb|JAA15757.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410287868|gb|JAA22534.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410352247|gb|JAA42727.1| Gen homolog 1, endonuclease [Pan troglodytes]
Length = 908
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GARTVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GARTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|395828598|ref|XP_003787457.1| PREDICTED: flap endonuclease GEN homolog 1 [Otolemur garnettii]
Length = 884
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSLLKECLEMLECLGIPWVQAAGEAEAMCAHLNAGGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVYKNF K HV YT ++ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYKNFTMNTKDPHVDCYTMSSVKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|326916541|ref|XP_003204565.1| PREDICTED: flap endonuclease GEN homolog 1-like, partial [Meleagris
gallopavo]
Length = 897
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Query: 302 ASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
AS + G + R + E +LL+ GVP++ A GEAEA CA L H G IT+D
Sbjct: 96 ASNKHGAARTGRSLFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITND 155
Query: 362 SDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQ 418
D++L+GA+TVY+NF K+ H+ YT I+ RE LI LA+L+G DY P G+
Sbjct: 156 GDVFLYGAQTVYRNFAMNSKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVP 215
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW 453
GVG AL+++ QN ++RF+ W
Sbjct: 216 GVGKEQALKLIETLR-----GQNL----LQRFEQW 241
>gi|401828649|ref|XP_003888038.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
gi|392999112|gb|AFM99057.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
Length = 564
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+SR + +++L +F + ++ AP EA++QC + N GVIT+D+D+ L+G T+++N
Sbjct: 387 ISRALRIIKDVLDVFNISYVDAPTEADSQCGFMCYSNIVDGVITEDNDVLLYGG-TIFRN 445
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
FF K + +Y+ I +L R+ LI+L+ L+GSDYTPG++G+GPV AL+ + K
Sbjct: 446 FFRKDREIEKYSLEKIEEELKLDRKNLIELSHLLGSDYTPGVRGIGPVKALDAVRK 501
>gi|332253767|ref|XP_003276003.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Nomascus
leucogenys]
gi|332253769|ref|XP_003276004.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Nomascus
leucogenys]
Length = 907
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFTSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVNGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|363732508|ref|XP_419963.2| PREDICTED: flap endonuclease GEN homolog 1 [Gallus gallus]
Length = 639
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Query: 302 ASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
AS + G + R + E +LL+ GVP++ A GEAEA CA L H G IT+D
Sbjct: 96 ASNKHGVARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITND 155
Query: 362 SDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQ 418
D++L+GA+TVY+NF K+ H+ YT I+ RE LI LA+L+G DY P G+
Sbjct: 156 GDVFLYGAQTVYRNFAMNSKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIP 215
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW 453
GVG AL+++ QN ++RF+ W
Sbjct: 216 GVGKEQALKLIETLR-----GQNL----LQRFEQW 241
>gi|157819261|ref|NP_001100380.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Rattus norvegicus]
gi|149046241|gb|EDL99134.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (mapped) [Rattus norvegicus]
Length = 862
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 57/83 (68%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 766 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 825
Query: 380 KSHVLRYTAPDIRYYFELTREKL 402
V Y D E KL
Sbjct: 826 NKFVEYYQYVDFYNQLESGGTKL 848
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+PV E LE KVLAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRPVSPEALEGKVLAVDISIWLNQALKGVRDRH 46
>gi|396082166|gb|AFN83777.1| Rad2 [Encephalitozoon romaleae SJ-2008]
Length = 559
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+ R + +++L +F + ++ AP EA++QC + N GVIT+D+D+ L+G TVY+N
Sbjct: 382 ICRVLRIIKDVLDVFNISYVDAPTEADSQCGFMCYRNIVDGVITEDNDVLLYGG-TVYRN 440
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
FF + + +Y+ I L R+ LI+L+ ++GSDYTPG++G+GPV ALE + K S
Sbjct: 441 FFRRDREIEKYSLEKIEKDLRLDRKNLIRLSHMLGSDYTPGVKGIGPVKALEAVRKGS 498
>gi|109658826|gb|AAI17205.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
gi|313883890|gb|ADR83431.1| Gen homolog 1, endonuclease (Drosophila) (GEN1), transcript variant
2 [synthetic construct]
Length = 908
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|109658672|gb|AAI17207.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
Length = 908
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|194018531|ref|NP_872431.3| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|194018535|ref|NP_001123481.1| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|290457644|sp|Q17RS7.2|GEN_HUMAN RecName: Full=Flap endonuclease GEN homolog 1
Length = 908
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|193643497|ref|XP_001947849.1| PREDICTED: flap endonuclease GEN-like [Acyrthosiphon pisum]
Length = 477
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 27/272 (9%)
Query: 282 LLQLFGVPFIVAPGEAEA-QCASLELGTDKKRRPY---VSRKML-----EAQELLQLFGV 332
LL + +P V GE + +++E + + P + RK L + + LL + GV
Sbjct: 62 LLLIGAIPIFVFDGEPPLLKYSTIEKRINGNKAPIKTNIIRKRLNSLQKQCELLLNIMGV 121
Query: 333 PFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKKSHVLRYTAPDI 391
+ GEAE CA L G++T DSD +L+GAR VY+NF V Y I
Sbjct: 122 TCVYGHGEAEQLCAILNKNGIVNGIVTQDSDCFLYGARVVYRNFNASGNGSVDVYCMGSI 181
Query: 392 RYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRF 450
++ R K+I L+LL G DY G+ G+G TA++ L S + + +++ +R +
Sbjct: 182 EKNLKIGRSKMIALSLLCGCDYDEKGVLGIGKDTAIKFL------QSLDDDAVLDRLRHW 235
Query: 451 KN--------WLAKKNKPDTHLTRKLRNVKL-NDDFPNVSVIEAYLKPDINTNVQKLAWG 501
+N K + L K+RN + N FP+ +VIE +LK N W
Sbjct: 236 RNDPVLNSAAMDIKSQTNEIKLELKIRNKAIENKSFPSEAVIEEFLKAP-NCPEVSAKWI 294
Query: 502 TPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
PD++ +FA K W + + +P++ +
Sbjct: 295 LPDINSFIKFALTKLCWEREYAIEKFLPLLTR 326
>gi|47077235|dbj|BAD18538.1| unnamed protein product [Homo sapiens]
Length = 908
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|432096863|gb|ELK27441.1| Flap endonuclease GEN like protein 1 [Myotis davidii]
Length = 903
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ELL+ G+P++ A GEAEA C+ L+ + G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLELLECLGIPWVQAAGEAEAMCSYLDASGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GARTVY+NF K HV YTA I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GARTVYRNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|74196654|dbj|BAE34428.1| unnamed protein product [Mus musculus]
Length = 739
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 37 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 96
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 97 GAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 156
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWL 454
AL++L F Q+ ++RF W+
Sbjct: 157 ALKLLQIFK-----GQSL----LQRFNQWI 177
>gi|357139431|ref|XP_003571285.1| PREDICTED: flap endonuclease GEN-like 2-like [Brachypodium
distachyon]
Length = 706
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 16/234 (6%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN- 375
SR + EA+ L G+P + E EAQCA L L + +G T DSD +LFGARTVY++
Sbjct: 119 SRMIKEAKNLGLALGIPCLDGVEEGEAQCALLNLTSLCEGCFTSDSDAFLFGARTVYRDV 178
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F + +V+ Y DI R+ LI LALL+G DY+ G++G GP A ++
Sbjct: 179 FIGEGGYVICYEMEDIEKKLGFGRKSLISLALLLGCDYSNGVRGFGPEAACRLVKSMGED 238
Query: 436 DSPNQ--NYIVESMRRFKNWLAKKNKP---DTHLTRKLRNVKLNDDFPNV--SVIEAYLK 488
+Q + V++ R+ K + NK D ++ D + I A+L+
Sbjct: 239 TILDQILSDGVKATRKCKAKMVGINKKKVGDVSTEASSSEAAMSQDSGDQFREAITAFLE 298
Query: 489 PDINT----NVQKLAWGTPDLDG-LRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P ++ NV+++ P L L++ F W+ + D+ ++P KI++R
Sbjct: 299 PKCHSPDSENVRRVCCQHPFLRSQLQQICEKCFDWTPEKTDEYILP---KIAER 349
>gi|348574836|ref|XP_003473196.1| PREDICTED: flap endonuclease GEN homolog 1-like [Cavia porcellus]
Length = 906
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 85/150 (56%), Gaps = 14/150 (9%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L+ G G +T+D D +L+
Sbjct: 102 SQKSGRSHFKSVLRECLEMLESLGIPWVQAAGEAEAMCAHLDAGGQVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YTA I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNPKDPHVDCYTASSIKNKLGLDRDALVALAVLLGCDYLPKGVPGVGREQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVES-MRRFKNW 453
AL+++ Q+ ES ++RF W
Sbjct: 222 ALKLI----------QSLKGESLLQRFDQW 241
>gi|383418083|gb|AFH32255.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
gi|383418085|gb|AFH32256.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
Length = 907
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|355751124|gb|EHH55379.1| hypothetical protein EGM_04579 [Macaca fascicularis]
Length = 907
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|109102065|ref|XP_001092423.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Macaca
mulatta]
gi|109102069|ref|XP_001092651.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 4 [Macaca
mulatta]
Length = 907
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|355565476|gb|EHH21905.1| hypothetical protein EGK_05073 [Macaca mulatta]
Length = 907
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|402890148|ref|XP_003908353.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Papio anubis]
gi|402890150|ref|XP_003908354.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Papio anubis]
gi|402890152|ref|XP_003908355.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Papio anubis]
Length = 906
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|73980577|ref|XP_540093.2| PREDICTED: flap endonuclease GEN homolog 1 [Canis lupus familiaris]
Length = 908
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKAGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YTA I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|148666016|gb|EDK98432.1| RIKEN cDNA 5830483C08 [Mus musculus]
Length = 908
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWL 454
AL++L F Q+ ++RF W+
Sbjct: 222 ALKLLQIFK-----GQSL----LQRFNQWI 242
>gi|148540148|ref|NP_796305.3| flap endonuclease GEN homolog 1 [Mus musculus]
gi|166221585|sp|Q8BMI4.2|GEN_MOUSE RecName: Full=Flap endonuclease GEN homolog 1
gi|60334795|gb|AAH90653.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957028|gb|AAI38159.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957572|gb|AAI38158.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
Length = 908
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWL 454
AL++L F Q+ ++RF W+
Sbjct: 222 ALKLLQIFK-----GQSL----LQRFNQWI 242
>gi|26326997|dbj|BAC27242.1| unnamed protein product [Mus musculus]
Length = 908
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWL 454
AL++L F Q+ ++RF W+
Sbjct: 222 ALKLLQIFK-----GQSL----LQRFNQWI 242
>gi|26326927|dbj|BAC27207.1| unnamed protein product [Mus musculus]
Length = 908
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWL 454
AL++L F Q+ ++RF W+
Sbjct: 222 ALKLLQIFK-----GQSL----LQRFNQWI 242
>gi|431911852|gb|ELK13996.1| Flap endonuclease GEN like protein 1 [Pteropus alecto]
Length = 903
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R Y + E ELL G+P++ A GEAEA CA L + G +TDD D +L+
Sbjct: 102 SQKTGRSYFKSVLRECLELLDCIGIPWVQAAGEAEAMCAYLNASGYVDGCLTDDGDTFLY 161
Query: 368 GARTVYKNF--FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFAMTSKDPHVDCYTMSSIMSELGLNRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|354481807|ref|XP_003503092.1| PREDICTED: flap endonuclease GEN homolog 1 [Cricetulus griseus]
Length = 876
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+ VY+NF K HV YTA I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQMVYRNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL++L
Sbjct: 222 ALKLL 226
>gi|449283697|gb|EMC90302.1| Flap endonuclease GEN like protein 1, partial [Columba livia]
Length = 542
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 12/154 (7%)
Query: 303 SLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 362
S ++G + R + E ELL+ GVP++ A GEAEA CA L H G IT+D
Sbjct: 32 SKKVGAARTGRSLFKAMLKECLELLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDG 91
Query: 363 DIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQG 419
D++L+GA TVY+NF K ++ YT I+ RE LI LA+L+G DY P G+ G
Sbjct: 92 DVFLYGAHTVYRNFAMNAKDPYLDCYTMSSIKETLGCDRESLIGLAVLLGCDYLPKGVPG 151
Query: 420 VGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW 453
VG AL+++ QN ++RF+ W
Sbjct: 152 VGKEQALKLIDTLQ-----GQNL----LQRFEQW 176
>gi|410955794|ref|XP_003984535.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Felis catus]
Length = 913
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 111 SQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLY 170
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT P I+ L RE L+ LA+L+G DY P G+ GVG
Sbjct: 171 GAQTVYRNFSMNTKDPHVDCYTMPSIKSKLGLDREALVGLAILLGCDYLPKGVPGVGKEQ 230
Query: 425 ALEIL 429
AL+++
Sbjct: 231 ALKLI 235
>gi|357498397|ref|XP_003619487.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|355494502|gb|AES75705.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 571
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 28/220 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EA+ L GV + EAEAQCA L + G + DSDI+LFGARTVY++
Sbjct: 124 EAKILGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICLGDG 183
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI R+ LI L+LL+GSDY PG+ G+GP +A +I+ S
Sbjct: 184 GYVVCYEMADIERKLGFGRDSLICLSLLLGSDYYPGVHGLGPDSACQIVK------SIGD 237
Query: 441 NYIVESMRRFKN----WLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN-- 494
++ +++F + W+ K RK K+ D + VI+AYLKP ++
Sbjct: 238 KFV---LKKFASEGLGWVKK---------RKGGQNKIGRDDTILQVIDAYLKPKCHSADS 285
Query: 495 ---VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
++ LA L A F W R D ++P +
Sbjct: 286 EFLLKALATYPFQRTKLHHICAVSFEWPSERTDGYILPCI 325
>gi|300120755|emb|CBK20997.2| unnamed protein product [Blastocystis hominis]
Length = 548
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 64/95 (67%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+++ E+L +FG+P++ APGEAEAQCA L+L GVI++DSD++ FG +T+Y+NFF
Sbjct: 445 IMDIVEILHIFGIPYVFAPGEAEAQCAFLDLMELVDGVISNDSDVFAFGGKTMYRNFFVD 504
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
V Y DI L R ++I+LALL+G DY
Sbjct: 505 NRFVEVYKIEDIEKERGLNRNRIIELALLLGCDYC 539
>gi|157821963|ref|NP_001100187.1| flap endonuclease GEN homolog 1 [Rattus norvegicus]
gi|149050926|gb|EDM03099.1| similar to RIKEN cDNA 5830483C08 gene (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 908
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL++L
Sbjct: 222 ALKLL 226
>gi|389603118|ref|XP_001568459.2| putative DNA repair protein RAD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505733|emb|CAM43572.2| putative DNA repair protein RAD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1029
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 22/221 (9%)
Query: 313 RPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
R V ++L ELL GVP++++P EA+AQCA L V T+DSD+ + GA TV
Sbjct: 731 RAVVPFELLNVVELLDCCGVPYVLSPAEADAQCAFLARRGLVDAVFTEDSDVLVHGATTV 790
Query: 373 YKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL--- 429
+ FF + HV+ Y + +T+ L+ LA L+G DY G+ G+G V AL+ L
Sbjct: 791 LRGFFSQSKHVVAYEQTHLSAC-GITKTVLVALASLLGCDYAEGISGIGLVGALKALVVA 849
Query: 430 ---AKFSPSDSPNQNYIVESMRRFKNWLAKK----NKPDTHLT-----------RKLRNV 471
A+ + + + + ++ +RR+ + + + D + + R +
Sbjct: 850 WTAAENAEDGAASSSAVLHVLRRWAQLVQRPPHSWQEVDDDMCVLQFALLQADLAQWRTL 909
Query: 472 KLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFA 512
+ FP +EA+ +++++ W PD LR FA
Sbjct: 910 EHRACFPEAHAVEAFFDAEVDSDTTPFEWLPPDWQRLRVFA 950
>gi|344246628|gb|EGW02732.1| Flap endonuclease GEN-like 1 [Cricetulus griseus]
Length = 317
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+ VY+NF K HV YTA I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQMVYRNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL++L
Sbjct: 222 ALKLL 226
>gi|385302733|gb|EIF46850.1| structure-specific endonuclease rad27 [Dekkera bruxellensis
AWRI1499]
Length = 305
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 106/206 (51%), Gaps = 25/206 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA+ LL+L G+P++ AP EAE+QCA L + G ++D D + + +N +S
Sbjct: 67 EAKHLLRLMGIPYVEAPCEAESQCAELAKAGNVYGAASEDMDTLCYQPTVLLRNVTAAES 126
Query: 382 HVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L+ DI+ F++T E+ + + +L+G DY ++GVGPVTA +++ K+ +
Sbjct: 127 RKLKIDQYDIKEVLKGFDMTIEEFVDMCILLGCDYCETIRGVGPVTATKLIRKYKSLEK- 185
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
IV+++ K P + K+ D++P E +L P++ +
Sbjct: 186 ----IVDAI---------KQDPKSKF-------KVPDNWPYKEARELFLHPEVKPGSEIN 225
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD++GL +F + G+S+ R+
Sbjct: 226 LKWEEPDVEGLVQFMVKENGFSEQRI 251
>gi|302772224|ref|XP_002969530.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
gi|300163006|gb|EFJ29618.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 17/202 (8%)
Query: 300 QCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVIT 359
Q A L L +K + R + +A L FG+P +V+ EAEAQCA+L T
Sbjct: 4 QVAGLPLKRNKGSQ--FGRMVEDATALATAFGIPCLVSLEEAEAQCAALNAMGFADACFT 61
Query: 360 DDSDIWLFGARTVYKNFFDK--KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGL 417
DSD LFGA+ VYK+ K +SHV+ Y IR F R LI L +L+G DY PG+
Sbjct: 62 ADSDALLFGAKVVYKDISLKPGESHVVAYDMTKIRNAFGYGRNSLIALGILLGCDYFPGV 121
Query: 418 QGVGPVTALEILAKFSPSDSPNQNYIVESMRR------FKNWLAKKNKPDTHLTRKLRNV 471
G+GP A +I+ KF ++ I+E M R K L K+K ++ ++
Sbjct: 122 HGLGPEKAQQIVKKF------GEDKILEEMLRQGPVTLAKRTLKCKDKENSTVSSDAHGF 175
Query: 472 KLNDDFPNVSVIEAYLKPDINT 493
+D+ I AY P +
Sbjct: 176 SEDDNMA-CKAIFAYTHPKCHA 196
>gi|340506781|gb|EGR32852.1| hypothetical protein IMG5_068750 [Ichthyophthirius multifiliis]
Length = 348
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 24/234 (10%)
Query: 298 EAQCASLELG------TDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLEL 350
E Q A+L++G ++R ++++ M +A ++LQL GVP I AP EAEAQCA+L
Sbjct: 113 EKQKAALDIGDMEEALKMEQRNLFITKDMKNDAIKMLQLLGVPVIQAPCEAEAQCAALTK 172
Query: 351 GNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVG 410
+T+D D FG T+ + KK ++ + ELT+E+ + L +L G
Sbjct: 173 AKKVFATVTEDMDALTFGTPTLLRGLNSKKEPIIEIDYNLMLQELELTQEQFVDLCILCG 232
Query: 411 SDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRN 470
DY + G+GP+TA + +++ +N +A K + ++K +
Sbjct: 233 CDYLVRIDGIGPITAYK---------------LIKEHLTLENVIAYMEKANDENSKK-QK 276
Query: 471 VKLNDDFPNVSVIEAYLKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
K+ ++ V + + P I + +L W PD++GL++F + G++++RV
Sbjct: 277 FKIPSEYNYVGARDLFFNPVIEDPEKMELKWTKPDIEGLKQFLVQEKGFNEDRV 330
>gi|226529749|ref|NP_001149363.1| XPG I-region family protein [Zea mays]
gi|224029981|gb|ACN34066.1| unknown [Zea mays]
gi|413941545|gb|AFW74194.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 111/234 (47%), Gaps = 16/234 (6%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN- 375
SR + EA+ L G+P + EAEAQCA L + G T DSD +LFGA+TVY++
Sbjct: 120 SRMIKEAKHLGLALGIPCLDGMEEAEAQCALLNFSSLCDGCFTSDSDSFLFGAKTVYRDV 179
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F + +V+ Y DI+ R LI LA+L+GSDY+ G+ G GP A ++
Sbjct: 180 FIGEGGYVICYEMEDIQNKLGFGRNSLISLAVLLGSDYSNGVHGFGPEAACRLVKSLGDD 239
Query: 436 DSPNQ--NYIVESMRRFKNWLAKKNKPDTHLT---RKLRNVKLNDDFPNV--SVIEAYLK 488
Q + V+ R+ K + N T V +N D + +I AYL+
Sbjct: 240 TVLGQILSDGVKPARKCKGKGSGANAGTVGGTCPKASTCEVGINQDSGSQFRDIINAYLE 299
Query: 489 PDINT----NVQKLAWGTPDLDG-LRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P ++ VQ+ P L L + F WS + D+ ++P KI++R
Sbjct: 300 PKCHSPDSEAVQRACSQRPFLRSQLHQICEQYFAWSPVKTDEYILP---KIAER 350
>gi|145514642|ref|XP_001443226.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124447858|sp|A0CYG2.1|FEN12_PARTE RecName: Full=Flap endonuclease 1-2; Short=FEN-1-2; AltName:
Full=Flap structure-specific endonuclease 1-2
gi|124410604|emb|CAK75829.1| unnamed protein product [Paramecium tetraurelia]
Length = 390
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 33/234 (14%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R +S M E A ++LQL G P I+AP EAEAQCA L T+D D F
Sbjct: 132 QRTTTISSIMKEDAIKMLQLMGCPVIIAPCEAEAQCAELCRAGKIYATATEDMDALTFRT 191
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ + F KK + D+ ELT E+ + L +L G DYT ++G+GP TA +++
Sbjct: 192 PVLLRGFNTKKEPIYEIIYDDMIKELELTYEQFVDLCILCGCDYTEKIEGIGPGTAYKLI 251
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
++ + I+E +++ A++ K N+ P +V +L
Sbjct: 252 KEYKSIEG-----ILEHVQKVN---AEREK--------------NNQNPKYTVPSKFLYQ 289
Query: 490 D-----INTNVQK-----LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
D I VQK L W PD+D L++F + G++++R+D L I KK
Sbjct: 290 DSRELFITPLVQKGDELQLTWNKPDVDNLKKFLIEEKGFAESRIDNGLKRIAKK 343
>gi|395509172|ref|XP_003758878.1| PREDICTED: uncharacterized protein LOC100916082 [Sarcophilus
harrisii]
Length = 978
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 103/199 (51%), Gaps = 22/199 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--DK 379
E +LL+ GVP++ A GEAEA CA L+ + G +TDD D +L+GA+TVY+NF K
Sbjct: 115 ECLDLLECLGVPWVQASGEAEAMCAYLDAHGYVDGCLTDDGDAFLYGAQTVYRNFTMNAK 174
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEILAKFSPSDSP 438
HV YT I+ L R+ LI LA+L+G DY P G+ GVG AL+++
Sbjct: 175 DPHVDCYTMSSIKRDLGLDRDTLIGLAVLLGCDYLPKGVPGVGKELALKLVRSLK----- 229
Query: 439 NQNYIVESMRRFKNWLAKKNKPD--THLTRKLR--NVKLNDDFPNVSVI--EAYLKPDIN 492
QN +++F W + + PD RK NV + P++ E++L +
Sbjct: 230 GQNL----LQKFDQWKEESHSPDLPPAPVRKPAHCNVCAHPGLPSIGDFPRESHL---LT 282
Query: 493 TNVQKLAWGTP-DLDGLRR 510
V LA G P D+ G R
Sbjct: 283 ARVPALARGQPGDVSGHWR 301
>gi|145514173|ref|XP_001442997.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124467070|sp|A0CXT3.1|FEN11_PARTE RecName: Full=Flap endonuclease 1-1; Short=FEN-1-1; AltName:
Full=Flap structure-specific endonuclease 1-1
gi|124410358|emb|CAK75600.1| unnamed protein product [Paramecium tetraurelia]
Length = 390
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R +S M E A ++L+L G P I+AP EAEAQCA L T+D D F
Sbjct: 132 QRTTTISSVMKEDAIKMLKLMGCPVIIAPCEAEAQCAELCRAGKIYATATEDMDALTFRT 191
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ + F KK + D+ E+T E+ + L +L G DYT ++G+GP TA +++
Sbjct: 192 PVLLRGFNTKKEPIYEIIYDDMMKELEITYEQFVDLCILCGCDYTEKIEGIGPGTAYKLI 251
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
+F + I+E +++ N +KNK + T + F E ++ P
Sbjct: 252 KEFKSIEG-----ILEHVQKV-NAEREKNKQNPKYT-------VPTKFLYQDSRELFITP 298
Query: 490 DINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
+ + +L W PD++ L++F + G++++R+D L I KK
Sbjct: 299 LVQKGEEIQLTWNKPDVENLKKFLVEEKGFAESRIDNGLKRIAKK 343
>gi|452843959|gb|EME45893.1| hypothetical protein DOTSEDRAFT_22018 [Dothistroma septosporum
NZE10]
Length = 925
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK--- 379
A++LL+ FG P+ +APGEAEA+CA L+ V+++D D +FG+ KN+ +
Sbjct: 107 AKQLLKQFGFPWHIAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLKNWSSEGTS 166
Query: 380 --KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALEILAKFSPSD 436
+HV Y A + + + RE +I +AL+ G DY T G+ G GP A + D
Sbjct: 167 KVPTHVNVYRAQETKEKSGMDREGMILVALMSGGDYITEGIPGCGPKLACDAARAGFGRD 226
Query: 437 SPN--QNYIVESMRRFKNWLAKK--NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
+N E ++ ++ L + H +RK + + DDFPN V+ Y P I+
Sbjct: 227 MCEVARNKDKEGLKAWRERLQHQIVTNEAKHFSRKNSKLVIPDDFPNQEVLGYYTHPCIS 286
Query: 493 TNVQ------KLAWGTP-DLDGLRRFAANKFGWS 519
T + L W P D LR FAA+ F W+
Sbjct: 287 TPDKLERLRNSLQWDQPIDFAALRSFAADAFDWT 320
>gi|426334793|ref|XP_004028921.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Gorilla
gorilla gorilla]
gi|426334795|ref|XP_004028922.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 908
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNADGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|302810129|ref|XP_002986756.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
gi|300145410|gb|EFJ12086.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
Length = 336
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 376
R + +A L FG+P +V+ EAEAQCA+L T DSD LFGA+ VYK+
Sbjct: 19 GRMVEDATALATAFGIPCLVSLEEAEAQCAALNAMGFADACFTADSDALLFGAKVVYKDI 78
Query: 377 FDK--KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
K +SHV+ Y IR F R LI L +L+G DY PG+ G+GP A +I+ KF
Sbjct: 79 SLKPGESHVVAYDMTKIRNAFGYGRNSLIALGILLGCDYFPGVHGLGPEKAQQIVKKF-- 136
Query: 435 SDSPNQNYIVESMRR------FKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLK 488
++ I+E M R K L K+K ++ + +D+ I AY
Sbjct: 137 ----GEDKILEEMLRQGPVTLAKRTLKCKDKANSTVASDAHGFSEDDNMA-CKAIFAYTH 191
Query: 489 PDINT 493
P +
Sbjct: 192 PKCHA 196
>gi|401429746|ref|XP_003879355.1| putative DNA repair protein RAD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495605|emb|CBZ30910.1| putative DNA repair protein RAD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 930
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 28/231 (12%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G + R + ++L ELL GVP++++P EA+AQCA L V T+DSD+ +
Sbjct: 626 GAARTNRVVIPFELLNVVELLDCCGVPYVLSPAEADAQCAFLARCGLVDAVFTEDSDVLV 685
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
GA TV + FF + +V+ Y + +T+ L+ LA L+G DYT G+ G+G V AL
Sbjct: 686 HGATTVLRGFFAQSKNVVAYEQTHL-SACGITKTVLVALASLLGCDYTEGVCGIGLVGAL 744
Query: 427 EIL------AKFSPSDSPNQNYIVESMRRFKNWLAKKNKP-------DTHLT-------- 465
E L A+ + + + + + ++ +RR W +P D H+T
Sbjct: 745 EALVVAWTTAENAEAGAASSSAVLHLLRR---WALLVQRPPRSWQDVDDHMTILQFALLQ 801
Query: 466 ---RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAA 513
+ R ++ FP +EA+ ++ + W PD +R FA
Sbjct: 802 AAVAQWRTLEQRACFPEAHAVEAFFDAKVDLDTTPFQWRPPDWQRIRVFAG 852
>gi|398023565|ref|XP_003864944.1| DNA repair protein RAD2, putative [Leishmania donovani]
gi|322503180|emb|CBZ38264.1| DNA repair protein RAD2, putative [Leishmania donovani]
Length = 930
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 28/232 (12%)
Query: 305 ELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDI 364
E G + R + ++L ELL GVP++++P EA+AQCA L V T+DSD+
Sbjct: 624 EGGAARTNRVVIPFELLNVVELLDCCGVPYVLSPAEADAQCAFLARCGLVDAVFTEDSDV 683
Query: 365 WLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVT 424
+ GA TV + FF + +V+ Y + +T+ L+ LA L+G DYT G+ G+G V
Sbjct: 684 LVHGATTVLRGFFAQSKNVVAYEQTHLSAC-GITKTVLVALASLLGCDYTEGVCGIGLVG 742
Query: 425 ALEILA------KFSPSDSPNQNYIVESMRRFKNWLAKKNKP-------DTHLT------ 465
ALE L + + + + + + ++ +RR W +P D H+T
Sbjct: 743 ALEALVVAWTTAESAEAGAASSSAVLHLLRR---WALLVQRPPRSWQEVDDHMTILQFAL 799
Query: 466 -----RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFA 512
+ R ++ FP +EA+ ++ + W PD +R FA
Sbjct: 800 LRAHVAQWRTLEQRACFPEAHAVEAFFDAKVDLDTTPFQWLPPDWQRIRVFA 851
>gi|146101653|ref|XP_001469167.1| putative DNA repair protein RAD2 [Leishmania infantum JPCM5]
gi|134073536|emb|CAM72269.1| putative DNA repair protein RAD2 [Leishmania infantum JPCM5]
Length = 930
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 28/232 (12%)
Query: 305 ELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDI 364
E G + R + ++L ELL GVP++++P EA+AQCA L V T+DSD+
Sbjct: 624 EGGAARTNRVVIPFELLNVVELLDCCGVPYVLSPAEADAQCAFLARCGLVDAVFTEDSDV 683
Query: 365 WLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVT 424
+ GA TV + FF + +V+ Y + +T+ L+ LA L+G DYT G+ G+G V
Sbjct: 684 LVHGATTVLRGFFAQSKNVVAYEQTHLSAC-GITKTVLVALASLLGCDYTEGVCGIGLVG 742
Query: 425 ALEILA------KFSPSDSPNQNYIVESMRRFKNWLAKKNKP-------DTHLT------ 465
ALE L + + + + + + ++ +RR W +P D H+T
Sbjct: 743 ALEALVVAWTTAESAEAGAASSSAVLHLLRR---WALLVQRPPRSWQEVDDHMTILQFAL 799
Query: 466 -----RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFA 512
+ R ++ FP +EA+ ++ + W PD +R FA
Sbjct: 800 LRAHVAQWRTLEQRACFPEAHAVEAFFDAKVDLDTTPFQWLPPDWQRIRVFA 851
>gi|396498478|ref|XP_003845243.1| similar to flap structure-specific endonuclease [Leptosphaeria
maculans JN3]
gi|312221824|emb|CBY01764.1| similar to flap structure-specific endonuclease [Leptosphaeria
maculans JN3]
Length = 935
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 33/223 (14%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A++LL+ FG P +APGEAEA+CA L+ V+++D D +FG+ +N+ +KS
Sbjct: 104 AKQLLKQFGFPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGITLRNWSPEKSG 163
Query: 382 ----HVLRYTAPDIRYYFE-LTREKLIQLALLVGSDYTP-GLQGVGPVTALEI------- 428
HV Y A + + L RE +I +AL+ G DY P G+ G GP TA E
Sbjct: 164 NTPTHVNVYDAIETKNGPSGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKAGFGS 223
Query: 429 -LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTH--LTRKLRNVKLNDDFPNVSVIEA 485
L K S SD ++ R+++ L + K + RK +K+ DDFP + ++
Sbjct: 224 DLCKISTSDR-------RAVSRWRDRLQHELKTNESKLFKRKHGALKIPDDFPRLDILGY 276
Query: 486 YLKPDIN--TNVQKL----AWGTPDLD--GLRRFAANKFGWSQ 520
Y P I+ T + KL W DLD GLR F + F W Q
Sbjct: 277 YTHPAISNQTGLDKLRRSIKWDQ-DLDFAGLRSFTHDAFDWIQ 318
>gi|242080167|ref|XP_002444852.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
gi|241941202|gb|EES14347.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
Length = 698
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 18/235 (7%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN- 375
SR + EA+ L G+P + EAEAQCA L + G T DSD +LFGARTVY++
Sbjct: 120 SRMIKEAKHLGLALGIPCLDGVEEAEAQCAMLNFASLCDGCFTSDSDSFLFGARTVYRDV 179
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F + +V+ Y DI+ R LI LA+L+GSDY+ G+ G GP A L K
Sbjct: 180 FIGEGGYVICYEMEDIQKKLGFGRNSLISLAVLLGSDYSNGVHGFGPELACR-LVKSVGD 238
Query: 436 DSPNQNYIVESMRRFKNWLAKKNKP------DTHLTRKLRNVKLNDDFPNV--SVIEAYL 487
D+ + + ++ + K + T V +N D +I AYL
Sbjct: 239 DAILDQILSDGVKPARKCKGKNSGAIAGRVGGTCPKASTCEVGINQDSGGQFRDIINAYL 298
Query: 488 KPDINT----NVQKLAWGTPDLDG-LRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+P ++ VQ+ P L L++ F WS + D+ ++P KI++R
Sbjct: 299 EPKCHSPDSEAVQRACSQQPFLRSQLQQICEQYFEWSPVKTDEYILP---KIAER 350
>gi|451854672|gb|EMD67964.1| hypothetical protein COCSADRAFT_187007 [Cochliobolus sativus
ND90Pr]
Length = 934
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 29/221 (13%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A++LL+ FG P +APGEAEA+CA L+ V+++D D +FG+ +N+ +KS
Sbjct: 109 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLRNWSPEKSG 168
Query: 382 ----HVLRYTAPDIRYYFE-LTREKLIQLALLVGSDYTP-GLQGVGPVTALEI------- 428
HV Y A + + L RE +I +AL+ G DY P G+ G GP TA E
Sbjct: 169 KTPTHVNVYDAVETKNGPSGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKAGFGA 228
Query: 429 -LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
L K +DS I + R ++ L K RK +K+ DDFP + ++ Y
Sbjct: 229 DLCKIPRNDS---RAIAQWKERLQHEL--KTNESKFFKRKHGALKIPDDFPRLDILGYYT 283
Query: 488 KPDINTNV------QKLAWGTPDLD--GLRRFAANKFGWSQ 520
P I+ + + W DLD GLR F + F W++
Sbjct: 284 HPAISNQAGLDKLRRSINWDR-DLDFPGLREFTQDAFDWAK 323
>gi|149390675|gb|ABR25355.1| endonuclease putative [Oryza sativa Indica Group]
Length = 262
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA ++ D
Sbjct: 23 ECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSS 82
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + ELT ++ I L +L G DY ++G+G TAL+++ + +S
Sbjct: 83 KKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIES- 141
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + ++ +D+P + +P++ ++ +L
Sbjct: 142 ----ILENINKDR-------------------YQIPEDWPYQEARRLFKEPNVTLDIPEL 178
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL +F + G++Q+RV + +
Sbjct: 179 KWNAPDEEGLVQFLVKENGFNQDRVTKAI 207
>gi|426223166|ref|XP_004005748.1| PREDICTED: flap endonuclease GEN homolog 1 [Ovis aries]
Length = 931
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 122 SQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDTFLY 181
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 182 GAQTVYRNFTMNTKDPHVDCYTMSSIKTKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQ 241
Query: 425 ALEIL 429
AL+++
Sbjct: 242 ALKLI 246
>gi|353235791|emb|CCA67798.1| probable DNA repair endonuclease rad2 [Piriformospora indica DSM
11827]
Length = 366
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 114/220 (51%), Gaps = 10/220 (4%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P +VAP EAEAQCA L G G ++D D F + + ++ +
Sbjct: 105 ECRKLLGLMGIPVVVAPSEAEAQCAELARGGLVYGAGSEDMDTLTFNSPILLRHLTFSEN 164
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + P + E+ + ++L +L+G DY ++GVGP +AL++L +
Sbjct: 165 RKEPILEISLPAVLEGLEMDMPQFVELCILLGCDYLEPIKGVGPKSALKLLREHG----- 219
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN-TNVQK 497
+ +VE +R K + + +K V + +++P + +L+PD+ + +
Sbjct: 220 SLGAVVEHLRS-KQASREDADEEGEGKKKKGGVHVPEEWPWERAKDLFLQPDVTPADSFE 278
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L W PDLDGL +F + G++++RV + + K I +
Sbjct: 279 LEWKAPDLDGLVQFLVTEKGFNEDRVRKGAEKLTKHIGAK 318
>gi|329664332|ref|NP_001192379.1| flap endonuclease GEN homolog 1 [Bos taurus]
gi|296482355|tpg|DAA24470.1| TPA: flap structure-specific endonuclease-like [Bos taurus]
Length = 906
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|317374863|sp|B8AW67.1|FEN11_ORYSI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|218197185|gb|EEC79612.1| hypothetical protein OsI_20807 [Oryza sativa Indica Group]
Length = 380
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA ++ D
Sbjct: 141 ECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + ELT ++ I L +L G DY ++G+G TAL+++ + +S
Sbjct: 201 KKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIES- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + ++ +D+P + +P++ ++ +L
Sbjct: 260 ----ILENINKDR-------------------YQIPEDWPYQEARRLFKEPNVTLDIPEL 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL +F + G++Q+RV + +
Sbjct: 297 KWNAPDEEGLVQFLVKENGFNQDRVTKAI 325
>gi|440909937|gb|ELR59789.1| Flap endonuclease GEN-like protein 1, partial [Bos grunniens mutus]
Length = 906
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|452000823|gb|EMD93283.1| hypothetical protein COCHEDRAFT_1223047 [Cochliobolus
heterostrophus C5]
Length = 926
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 29/221 (13%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A++LL+ FG P +APGEAEA+CA L+ V+++D D +FG+ +N+ +KS
Sbjct: 109 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLRNWSPEKSG 168
Query: 382 ----HVLRYTAPDIRYYFE-LTREKLIQLALLVGSDYTP-GLQGVGPVTALEI------- 428
HV Y A + + L RE +I +AL+ G DY P G+ G GP TA E
Sbjct: 169 KTPTHVNIYDAVETKNGPSGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKAGFGA 228
Query: 429 -LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
L K +DS I + R ++ L K RK +K+ DDFP + ++ Y
Sbjct: 229 DLCKIPRNDS---RAIAQWKERLQHEL--KTNESKFFKRKHGALKIPDDFPRLDILGYYT 283
Query: 488 KPDINTNV------QKLAWGTPDLD--GLRRFAANKFGWSQ 520
P I+ + + W DLD GLR F + F W++
Sbjct: 284 HPAISNQAGLDKLRRSINWDR-DLDFPGLREFTQDAFDWAK 323
>gi|115465159|ref|NP_001056179.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|62510701|sp|Q9SXQ6.1|FEN11_ORYSJ RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A; AltName:
Full=OsFEN-1a
gi|4587225|dbj|BAA36171.1| FEN-1 [Oryza sativa Japonica Group]
gi|113579730|dbj|BAF18093.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|222632398|gb|EEE64530.1| hypothetical protein OsJ_19381 [Oryza sativa Japonica Group]
Length = 380
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA ++ D
Sbjct: 141 ECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + ELT ++ I L +L G DY ++G+G TAL+++ + +S
Sbjct: 201 KKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIES- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + ++ +D+P + +P++ ++ +L
Sbjct: 260 ----ILENINKDR-------------------YQIPEDWPYQEARRLFKEPNVTLDIPEL 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL F + G++Q+RV + +
Sbjct: 297 KWNAPDEEGLVEFLVKENGFNQDRVTKAI 325
>gi|344280345|ref|XP_003411944.1| PREDICTED: flap endonuclease GEN homolog 1 [Loxodonta africana]
Length = 739
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 12/160 (7%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNANGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ +A+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGVAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHL 464
AL+++ ++RF W K DT +
Sbjct: 222 ALKLIQTLRGQS---------LLQRFNQWNEKSCYSDTQI 252
>gi|224136982|ref|XP_002322464.1| predicted protein [Populus trichocarpa]
gi|222869460|gb|EEF06591.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 70/115 (60%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA+++ G+P + + EAEAQCA L + G + DSD++LFGARTVY++ +
Sbjct: 125 EAKDIGLALGIPCLDSIEEAEAQCALLNTESLCDGCFSSDSDVFLFGARTVYRDICLGEG 184
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
HV+ Y ++ R LI LAL++GSDY+PG+ G+GP +A +I+ S+
Sbjct: 185 HVVCYEMEEVERKLGFGRNSLITLALILGSDYSPGVHGLGPESACQIVKSIGDSN 239
>gi|443691424|gb|ELT93282.1| hypothetical protein CAPTEDRAFT_209048 [Capitella teleta]
Length = 270
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 314 PYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVY 373
P S K+ E Q LL L G+P + + GEAEA C L +GVIT+DSD +LFGA VY
Sbjct: 101 PEFSSKVREMQHLLDLLGIPSVQSSGEAEALCGVLNERGVVEGVITNDSDAFLFGATKVY 160
Query: 374 KNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILA 430
KNF K+S Y ++ R+ L+ LALL G D+T G QGVG AL++L
Sbjct: 161 KNFTANKAKESEQEVYRMKRLQGLLGADRKGLVALALLAGCDFTSGSQGVGSTGALKLLK 220
Query: 431 KFSPSDSPNQNY 442
+ P P + Y
Sbjct: 221 HWGPQVDPIERY 232
>gi|440296320|gb|ELP89147.1| hypothetical protein EIN_485090 [Entamoeba invadens IP1]
Length = 688
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 37/222 (16%)
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 384
E++ +P + +P EAEAQCA V ++DSD+++FGA+ V +NF
Sbjct: 470 EMVTALEIPHVFSPWEAEAQCAYYNKTKMCDYVASNDSDVFVFGAKNVIRNFLIDGEVAT 529
Query: 385 RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS----------- 433
+TA LT+EK I LALL+GSD+T G+ VGP A++I+ F
Sbjct: 530 IHTA-------NLTQEKYIFLALLLGSDFTEGVGKVGPKRAIQIIKMFDTPEQFAKVMHV 582
Query: 434 -------PSDSPN------QNYIVESMRRFKNWLAKKNKPDTHLTRKLRNV-KLNDDFPN 479
PS N + ++E MR K+ +A+ K D +L+NV L D FP+
Sbjct: 583 SDTFTSFPSKDVNSSKGEDKKSVMEEMRNEKD-IARLYKKDID---QLKNVITLKDTFPD 638
Query: 480 VSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQN 521
VI+AYL P+I Q + + L+ +A K W+++
Sbjct: 639 QQVIKAYLHPNIREE-QLILTSQYSKEKLQTYAKEKLDWNEH 679
>gi|149728133|ref|XP_001503466.1| PREDICTED: flap endonuclease GEN homolog 1 [Equus caballus]
Length = 908
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|327261246|ref|XP_003215442.1| PREDICTED: flap endonuclease GEN homolog 1-like [Anolis
carolinensis]
Length = 631
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
GT + R ++ + E E+L+ GVP++ A GEAEA CA L + IT+D D +L
Sbjct: 101 GTTRTGRSHLKSFLKECLEMLECLGVPWVQAAGEAEAMCAYLNSNGYVDACITNDGDAFL 160
Query: 367 FGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
+GA+TVY+NF K HV Y+ I +RE LI LA+L+G DY P G+ GVG
Sbjct: 161 YGAQTVYRNFTMNTKDPHVDCYSISAIEEKLGCSRESLIGLAVLLGCDYLPKGVPGVGKE 220
Query: 424 TALEIL 429
AL ++
Sbjct: 221 QALRLI 226
>gi|281344218|gb|EFB19802.1| hypothetical protein PANDA_002978 [Ailuropoda melanoleuca]
Length = 906
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|195626660|gb|ACG35160.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 16/234 (6%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN- 375
SR + EA+ L G+P + EAEAQCA L + G T DSD +LFGA+T Y++
Sbjct: 120 SRMIKEAKHLGLALGIPCLDGMEEAEAQCALLNFSSLCDGCFTSDSDSFLFGAKTFYRDV 179
Query: 376 FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
F + +V+ Y DI+ R LI LA+L+GSDY+ G+ G GP A ++
Sbjct: 180 FIGEGGYVICYEMEDIQNKLGFGRNSLISLAVLLGSDYSNGVHGFGPEAACRLVKSLGDD 239
Query: 436 DSPNQ--NYIVESMRRFKNWLAKKNKPDTHLT---RKLRNVKLNDDFPNV--SVIEAYLK 488
Q + V+ R+ K + N T V +N D + +I AYL+
Sbjct: 240 TVLGQILSDGVKPARKCKGKGSGANAGTVGGTCPKASTCEVGINQDSGSQFRDIINAYLE 299
Query: 489 PDINT----NVQKLAWGTPDLDG-LRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
P ++ VQ+ P L L + F WS + D+ ++P KI++R
Sbjct: 300 PKCHSPDSEAVQRACSQRPFLRSQLHQIYEQYFAWSPVKTDEYILP---KIAER 350
>gi|402466077|gb|EJW01645.1| hypothetical protein EDEG_03812 [Edhazardia aedis USNM 41457]
Length = 856
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 384
++L++F +PF+ AP EA++QCA L N VIT+D+DI+LFG + +Y+N+F ++
Sbjct: 646 DILKIFNLPFVEAPLEADSQCAYFSLKNIVDAVITEDNDIFLFGGKKIYRNYFKNGKNID 705
Query: 385 RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI------LAKFSPSDSP 438
Y +I+ ++R+++I ++L++GSDY G++G G +L++ LAK + +++
Sbjct: 706 LYDINEIKKI--ISRDEMIMISLILGSDYCDGIKGFGLKKSLDLIKYSRNLAKIAENETK 763
Query: 439 NQN 441
N N
Sbjct: 764 NPN 766
>gi|301758368|ref|XP_002915044.1| PREDICTED: flap endonuclease GEN homolog 1-like [Ailuropoda
melanoleuca]
Length = 907
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|402218593|gb|EJT98669.1| PIN domain-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 399
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 11/206 (5%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q+LL L G+P +VAP EAEAQCA L G ++D D F + ++ F +
Sbjct: 141 ECQKLLALMGIPCVVAPSEAEAQCAELARGGKVFAAGSEDMDTLTFNTPILLRHLTFSEA 200
Query: 380 KSHVLRYTAPDIRY-YFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
K + + ++ E+ K I L +L+G DY ++G+GP +AL+++ +
Sbjct: 201 KKMPISEISLELALEGLEMNMSKFIDLCILLGCDYLEPIKGIGPKSALKLV-----REHD 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN-TNVQK 497
N I+E++R + K++K D +K V++ DD+P E ++ P + +
Sbjct: 256 NMEEILETLR--GKMVKKESKGDGTPPKKRGGVQVPDDWPWEKAKELFIHPAVTPADELT 313
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G++++RV
Sbjct: 314 LEWKDPDVDGLIEFLVRQKGFNEDRV 339
>gi|344233741|gb|EGV65611.1| PIN domain-like protein [Candida tenuis ATCC 10573]
Length = 376
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 25/218 (11%)
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ EA++LL+L G+P+I AP EAEAQCA L G ++D D +
Sbjct: 129 KRMVRVSREHNDEAKKLLELMGIPYINAPCEAEAQCAELARGGKVFAAASEDMDTICYSP 188
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ ++ + D + FE+ ++ I L +L+G DY ++GVGPVTA
Sbjct: 189 PYLLRHLTFSEARKIPIDQIDCKTAIEGFEMDKKTFIDLCILLGCDYCETIKGVGPVTAF 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ ++ ++++ +F N + PD KL +++P E +
Sbjct: 249 KLI---------KEHGSIDNIVKFIN-----DNPDK------TKYKLPENWPYEEARELF 288
Query: 487 LKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRV 523
L PDI + W PDL+G+ F N G+S++RV
Sbjct: 289 LNPDITPCSELSFKWKEPDLEGMIEFMVNDKGFSEDRV 326
>gi|146171182|ref|XP_001470841.1| flap endonuclease-1 [Tetrahymena thermophila]
gi|317376196|sp|A4VDN2.1|FEN1_TETTS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146145019|gb|EDK31639.1| flap endonuclease-1 [Tetrahymena thermophila SB210]
Length = 384
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 24/235 (10%)
Query: 297 AEAQCASLELG------TDKKRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLE 349
AE Q ++E G ++R +++++M +A +LLQL GVP I+AP EAEAQCA+L
Sbjct: 112 AEKQKTAIETGDMQEALKQEQRNLHITKEMKADAIKLLQLVGVPVILAPCEAEAQCAALA 171
Query: 350 LGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLV 409
+T+D D F + +N KK + + +L+ + + L +L
Sbjct: 172 KAKKVFATVTEDMDALTFATPFLLRNLNSKKEPITEINYEKMLQELKLSHNEFVDLCILC 231
Query: 410 GSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLR 469
G DY ++GVGPV A +++ ++ + ++E M KK K
Sbjct: 232 GCDYLGRIEGVGPVNAFKLI-----TEHKSLEKVLEHMEEVNKQSTKKQK---------- 276
Query: 470 NVKLNDDFPNVSVIEAYLKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + VS + ++ P++ + +L W PD++ L++F + G+S+ RV
Sbjct: 277 -YTVPSSYDYVSARDLFINPEVTDPETIQLEWKKPDVEELKKFLVEEKGFSEQRV 330
>gi|311253092|ref|XP_003125389.1| PREDICTED: flap endonuclease GEN homolog 1 [Sus scrofa]
Length = 906
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L G +T+D D +L+
Sbjct: 102 SHKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|294658624|ref|XP_460967.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
gi|317374925|sp|Q6BLF4.2|FEN1_DEBHA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|202953266|emb|CAG89325.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
Length = 379
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL+L GVP++ AP EAEAQCA L G ++D D + + ++ S
Sbjct: 141 EAKKLLELMGVPYVNAPCEAEAQCAELARGGKVFAAASEDMDTICYQPPFLLRHL--TFS 198
Query: 382 HVLRYTAPDIRY-----YFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+ I+Y E+ RE I L +L+G DY ++GVGPVTA +++ + D
Sbjct: 199 EARKMPIDQIQYEKVLEALEMDRETFIDLCILLGCDYCETIRGVGPVTAFKLIKEHGSLD 258
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNV 495
IVE + N PD N K+ +D+P + ++ PD I+ +
Sbjct: 259 K-----IVEYL---------TNNPDKT------NFKVPEDWPYDEARKLFINPDTIDASE 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD++GL ++ + G+S++R+
Sbjct: 299 VNLKWKEPDVEGLIQYMVKEKGFSEDRI 326
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LL+L GVP++ AP EAEAQCA L G
Sbjct: 134 VTREQNDEAKKLLELMGVPYVNAPCEAEAQCAELARG 170
>gi|260796605|ref|XP_002593295.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
gi|229278519|gb|EEN49306.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
Length = 790
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 79/152 (51%), Gaps = 13/152 (8%)
Query: 306 LGTDKK-RRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDI 364
LG KK +R + + E LL G+P + + GEAEA CA L + G +TDD D
Sbjct: 105 LGKPKKMKRSHFKAILKECILLLDGLGIPHVQSKGEAEAFCALLNRESLVDGCLTDDGDA 164
Query: 365 WLFGARTVYKNF-FDKKS-HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVG 421
+L+GARTVY+N DKK HV Y DI L R KL+ LALL+G DY P G+ GVG
Sbjct: 165 FLYGARTVYRNLTLDKKDPHVDCYQMSDIEEKLLLDRNKLVGLALLLGCDYCPKGVPGVG 224
Query: 422 PVTALEILAKFSPSDSPNQNYIVESMRRFKNW 453
A+ ++ D + RFK W
Sbjct: 225 KELAVRVMTALETCD---------VLERFKVW 247
>gi|383854420|ref|XP_003702719.1| PREDICTED: flap endonuclease GEN-like [Megachile rotundata]
Length = 717
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
K RRP ++R + E +ELL G+ I GEAEA CA L G I+ DSD +L+GA
Sbjct: 103 KGRRPQLNRILKECKELLGYMGLACIQGQGEAEAMCAHLNEDGLVHGCISQDSDCFLYGA 162
Query: 370 RTVYKNFFDKK--------SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVG 421
+ VY+NF V Y+ I +L R K+I LALL G DY GL GVG
Sbjct: 163 KVVYRNFCTSAQGNRGGTGGAVDEYSIEKIEKALDLGRNKMIALALLCGCDYDEGLNGVG 222
Query: 422 PVTALEILAKFSPSDSPNQNYIVESMRRFKNW 453
A+++ D I+E R K+W
Sbjct: 223 KEAAMKLFKIVKDED------IIE---RLKSW 245
>gi|403358237|gb|EJY78757.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 967
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 25/215 (11%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
M +A++LL+L G P I APGEAEAQCA L ++D D FG + + + F K
Sbjct: 143 MRDAKKLLRLMGCPVIDAPGEAEAQCAHLVKLGLAFATASEDMDSLTFGTKVLLRGFNSK 202
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
K +++ ++ F + ++ I L +L G DYT + G+GP+ A + L++
Sbjct: 203 KEPIIQIDLEEVLEGFMMNHDQFIDLCILCGCDYTTSITGIGPIKAYQYLSEHGG----- 257
Query: 440 QNYIVESMRR---FKN---WLAKK-NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
I+E++ + ++N W KK + P+ L ++ R + N P + ++ L+
Sbjct: 258 ---IIENVIKKVEYENQKPWKKKKYHIPENFLFKEARELFKN---PRIEKDQSKLEY--- 308
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
K+ W PD +GL+ F + G+S +VD L
Sbjct: 309 ----KIKWTKPDEEGLKEFLITQKGFSDVKVDSGL 339
>gi|241627391|ref|XP_002409855.1| endonuclease, putative [Ixodes scapularis]
gi|215503262|gb|EEC12756.1| endonuclease, putative [Ixodes scapularis]
Length = 384
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 24/218 (11%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+R+ E + LL L GVP+I AP EAEAQCA L G G T+D D FG
Sbjct: 126 KRLVKVTRQHGEDCKRLLGLMGVPYIEAPCEAEAQCAELVKGGKVYGTATEDMDGLTFGT 185
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ +K + + + EL R++ I L +L+G DY ++G+GP A+
Sbjct: 186 NVLLRHMTYSEARKMPIKEFNLERVLSGLELNRDEFIDLCILLGCDYCESIRGIGPKRAI 245
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
E++ + +S+ + + + K DT T + +D+P + +
Sbjct: 246 ELIKQH------------KSIEKIISSIDTKACCDTKYT-------IPEDWPFKEARQLF 286
Query: 487 LKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRV 523
L+P++ + +L W PD DGL +F + G+S+ R+
Sbjct: 287 LEPEVTPASEIQLKWTDPDEDGLVKFLCEENGFSEERI 324
>gi|389595061|ref|XP_003722753.1| putative DNA repair protein RAD2 [Leishmania major strain Friedlin]
gi|323363981|emb|CBZ12987.1| putative DNA repair protein RAD2 [Leishmania major strain Friedlin]
Length = 931
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 28/231 (12%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G + R + ++L ELL GVP++++P EA+AQCA L V T+DSD+ +
Sbjct: 627 GAARTHRVVIPFELLNVVELLDCCGVPYVLSPAEADAQCAFLARCGLVDAVFTEDSDVLV 686
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
GA V + FF + +V+ Y + +T+ L+ LA L+G DYT G+ G+G V AL
Sbjct: 687 HGATRVLRGFFAQSKNVVAYEQTHL-SACGITKTVLVALASLLGCDYTEGVCGIGLVGAL 745
Query: 427 EILA------KFSPSDSPNQNYIVESMRRFKNWLAKKNKP-------DTHLT-------- 465
E L + + + + + + ++ +RR W +P D H+T
Sbjct: 746 EALVVAWTTAESAEAGAASSSAVLHLLRR---WALLVQRPPRSWQEVDDHMTILQFALLQ 802
Query: 466 ---RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAA 513
+ R ++ FP +EA+ ++ + W PD +R FA
Sbjct: 803 VHVAQWRTLEQRACFPEAHAVEAFFDAKVDLDTTPFQWLPPDWQRIRVFAG 853
>gi|359490377|ref|XP_002263340.2| PREDICTED: flap endonuclease GEN-like 2-like [Vitis vinifera]
gi|297741051|emb|CBI31782.3| unnamed protein product [Vitis vinifera]
Length = 565
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 111/241 (46%), Gaps = 38/241 (15%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EA+ L G+P + EAEAQCA L + G T DSD++LFGARTVY++ +
Sbjct: 124 EAKVLGLALGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTVYRDICLGEG 183
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI R LI LALL+GSDY+ G+ G GP +A +I+ S +
Sbjct: 184 GYVVCYEMADIESTLGFGRNSLITLALLLGSDYSQGVHGFGPESACQIV------KSVGE 237
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVS------------------- 481
+++ + AKK+K +RK V +D N S
Sbjct: 238 EVVLKKIALEGISFAKKSKG----SRKQGQVLKCNDKENCSDHEMNINGSEHSSQREFLR 293
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANK-----FGWSQNRVDQTLIPIMKKISQ 536
VI+AYLKP ++ L +R A K F W + D+ ++P KI++
Sbjct: 294 VIDAYLKPKCHSADSDAVHRALALLPFQRTEAQKICAQLFEWPPEKTDEYILP---KIAE 350
Query: 537 R 537
R
Sbjct: 351 R 351
>gi|432330136|ref|YP_007248279.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
gi|432136845|gb|AGB01772.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
Length = 333
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 43/226 (19%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
++ELL L G+P + APGE EAQ A + VI+ D D LFGA T+ +N
Sbjct: 136 SRELLGLMGIPVVQAPGEGEAQAAFMVARGDCLYVISQDYDTLLFGAPTLVRNLTVSGKR 195
Query: 383 VL----------RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
+ R + +LTRE+LI++ +LVG+D+ PG++GVG T L+I+ K
Sbjct: 196 KIRGRQITVNPERIVLAETLAGLKLTREQLIEIGILVGTDFNPGVEGVGAKTGLKIVQK- 254
Query: 433 SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
F L +K DF V+E +LKP +
Sbjct: 255 ---------------GEFAAKLKEKQP----------------DFDPAPVMEMFLKPPVT 283
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
T +A G PD +G+++ + + +S+ RVD+ L K Q++
Sbjct: 284 TEYS-VAAGHPDAEGIKKMLCDGYDFSEERVDKALEGFSVKAGQKT 328
>gi|393232393|gb|EJD39975.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 400
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E + LL+L G+P ++AP EAEAQCA L G ++D D FGA +Y++ ++
Sbjct: 141 ECRRLLRLMGIPVVIAPSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILYRHLTFSEA 200
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ D++ + +T ++ I+L LL+G DY ++GVGP +AL+ + + D
Sbjct: 201 KKQPISEIDLQKALDGLNMTMDQFIELCLLLGCDYLEPIKGVGPKSALKYMREMGSLDK- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN-TNVQK 497
IV+ +R + A +++ K V++ + +P + ++KPD+ + +
Sbjct: 260 ----IVDHLREKQ---ADRDEAVDAGKAKKGGVQVPEHWPWEEAKKLFIKPDVTPADEVE 312
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G++++RV
Sbjct: 313 LEWKNPDVDGLVDFLVKEKGFNEDRV 338
>gi|195629924|gb|ACG36603.1| flap endonuclease 1a [Zea mays]
Length = 379
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+R+ E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA
Sbjct: 129 KRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASEDMDSLTFGA 188
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
++ D KK V+ + + ELT ++ I L +L G DY ++G+G TAL
Sbjct: 189 PRXLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTAL 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + +S I+E++ + + ++ +D+P +
Sbjct: 249 KLIRQHGSIES-----ILENLNKDR-------------------YQIPEDWPYQEARRLF 284
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P++ ++ +L W PD +GL F G++++RV + +
Sbjct: 285 KEPNVTLDIPELKWTAPDEEGLISFLVKDNGFNEDRVTKAI 325
>gi|317374910|sp|B4FHY0.1|FEN1_MAIZE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194695278|gb|ACF81723.1| unknown [Zea mays]
Length = 379
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+R+ E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA
Sbjct: 129 KRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASEDMDSLTFGA 188
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
++ D KK V+ + + ELT ++ I L +L G DY ++G+G TAL
Sbjct: 189 PRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTAL 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + +S I+E++ + + ++ +D+P +
Sbjct: 249 KLIRQHGSIES-----ILENLNKDR-------------------YQIPEDWPYQEARRLF 284
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P++ ++ +L W PD +GL F G++++RV + +
Sbjct: 285 KEPNVTLDIPELKWTAPDEEGLISFLVKDNGFNEDRVTKAI 325
>gi|340501530|gb|EGR28305.1| hypothetical protein IMG5_178850 [Ichthyophthirius multifiliis]
Length = 322
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R +++++M +A ++L+L G P I APGEAEAQCA+L +T+D D FG
Sbjct: 108 QRNIFITQEMKNDAIKMLKLLGFPVIEAPGEAEAQCAALTKTGQVFATVTEDMDALTFGT 167
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ + KK ++ + E + + I L +L G DY ++G+GPV A +++
Sbjct: 168 TILLRGLNSKKEPIVEINHYQMLKELEFSENQFIDLCILCGCDYLEKIEGIGPVNAYKLI 227
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
+F ++ N+I + RF P + +++RN+ + KP
Sbjct: 228 KEFKNLENT-INFIEKKQNRFI-------IPKNYNFQEVRNL--------------FQKP 265
Query: 490 DINTNVQK--LAWGTPDLDGLRRFAANKFGWSQNRV 523
+I NV+K + W P+L+ L +F + G++Q R+
Sbjct: 266 EI-ENVEKIEIKWQKPNLEKLNQFLVQEKGFNQERI 300
>gi|357132761|ref|XP_003567997.1| PREDICTED: flap endonuclease 1-A-like [Brachypodium distachyon]
Length = 380
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP + AP EAEAQCA+L + + V ++D D FGA ++ D S
Sbjct: 141 DCKRLLRLMGVPVVEAPCEAEAQCAALCIKDKVYAVASEDMDSLTFGAPRFVRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
++ + I E T ++ I L +L G DY ++G+G +TAL+++ + +
Sbjct: 201 RKIPIMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQHGSIEG- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + K ++ +D+P + +P++ ++ +L
Sbjct: 260 ----ILENINKDK-------------------YQIPEDWPYEEARRLFKEPNVTLDLPEL 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL F + G++Q+RV + +
Sbjct: 297 KWTAPDEEGLVNFLVKENGFNQDRVTKAI 325
>gi|55733906|gb|AAV59413.1| putative flap endonuclease 1 [Oryza sativa Japonica Group]
Length = 380
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 27/218 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA ++ D
Sbjct: 144 ECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSS 203
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + ELT ++ I L +L G DY ++G+G TAL+++ + +S
Sbjct: 204 KKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIES- 262
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + ++ +D+P + +P++ ++ +L
Sbjct: 263 ----ILENINKDR-------------------YQIPEDWPYQEARRLFKEPNVTLDIPEL 299
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
W PD +GL F + G++Q+R + + K SQ
Sbjct: 300 KWNAPDEEGLVEFLVKENGFNQDRAIEKIKFAKNKSSQ 337
>gi|339253602|ref|XP_003372024.1| flap endonuclease 1a [Trichinella spiralis]
gi|316967624|gb|EFV52031.1| flap endonuclease 1a [Trichinella spiralis]
Length = 381
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 29/218 (13%)
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R VS++ + E + LL+L G+P+I AP EAEAQCA+L T+D D FG+
Sbjct: 138 RRLTKVSKEHVDECKRLLKLMGIPYIEAPCEAEAQCAALVKAKKVFAAATEDMDTLTFGS 197
Query: 370 RTV--YKNFFD-KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ Y F + KK + + D+ + +T E+ + +L+G DY P ++GVGP A
Sbjct: 198 DIMLRYLTFSEAKKMPIKEFRFDDVLHGLNMTHEEFVDFCILLGCDYCPTIKGVGPKKAY 257
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ ++ N IVE L KK P + +++ +V + +
Sbjct: 258 DLIKQYR-----NLEVIVEK-------LDKKKYP------------IPENWQYKAVRKLF 293
Query: 487 LKPD-INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
L+P+ I+ N +L W PD GL F N+ + NRV
Sbjct: 294 LEPEVIDCNTIELTWKDPDEQGLITFLVNEKNFGHNRV 331
>gi|432945552|ref|XP_004083655.1| PREDICTED: flap endonuclease GEN homolog 1-like [Oryzias latipes]
Length = 783
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF--FDK 379
E E+L GVP+++A GEAEA CA L+ G IT+D D +L+GARTVY+NF K
Sbjct: 118 ECAEMLDYLGVPWVMAAGEAEAMCAYLDSQGLVDGCITNDGDAFLYGARTVYRNFNMSSK 177
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL 429
+ Y ++ L+RE L+ LA+L+G DY P G+ GVG AL ++
Sbjct: 178 DPQIDCYQTSRVQTELNLSRENLVGLAILLGCDYIPKGIPGVGKEQALRLI 228
>gi|403288138|ref|XP_003935270.1| PREDICTED: flap endonuclease GEN homolog 1 [Saimiri boliviensis
boliviensis]
Length = 909
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAVGCVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
gi|73919351|sp|Q6L2I9.1|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
Length = 338
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 45/245 (18%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EA A ++ + R Y++ ++ E++ LL L G+P++ AP E EAQ + + L
Sbjct: 107 EAIASNDDAKIRSLSSRINYITDDIVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDV 166
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFE------------LTREKL 402
V++ D D LFGA+ + +NF + T+ I E ++RE+L
Sbjct: 167 NAVVSQDYDCLLFGAKRILRNFTVYGRRRIAGTSRTINVNPEIIDLNENLSNLGISREQL 226
Query: 403 IQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDT 462
I + +L G+D+ PG++G+G TAL ++ K++ D
Sbjct: 227 IYIGILTGTDFNPGVKGIGAKTALSLIKKYN---------------------------DI 259
Query: 463 HLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
+ K++N+ + D+ +IE ++ P N ++ + PD DG+ F K +S++R
Sbjct: 260 YSVIKIKNIGI-DNLD--EIIEFFMNPPHND--YEIKFNEPDFDGIIDFLCGKHNFSESR 314
Query: 523 VDQTL 527
V++TL
Sbjct: 315 VNETL 319
>gi|443725425|gb|ELU13028.1| hypothetical protein CAPTEDRAFT_123501, partial [Capitella teleta]
Length = 206
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++ + ++ ELL L GVP + + GEAEA CA L VIT+D D +L+GAR VY+N
Sbjct: 74 IAVQFIQCCELLDLLGVPHVQSSGEAEAMCAQLNKEKVVDAVITNDGDAFLYGARKVYRN 133
Query: 376 FF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEILAKF 432
F K HV Y +I L R+ L+ LALL+G DY P G+ GVG T L+++A+
Sbjct: 134 FTMNTKDPHVESYCMDEIEDKLSLDRKTLVALALLLGCDYAPQGVAGVGKETVLKLIAEL 193
Query: 433 S 433
+
Sbjct: 194 N 194
>gi|323457006|gb|EGB12872.1| hypothetical protein AURANDRAFT_19112 [Aureococcus anophagefferens]
Length = 396
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 20/230 (8%)
Query: 316 VSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VSRK + ++LL+L GVP + AP EAEAQCA L G V T+D D FG+ +
Sbjct: 139 VSRKDCDDVKQLLRLMGVPVVDAPCEAEAQCAELVRGGKAHAVGTEDMDALTFGSTRQLR 198
Query: 375 NF-FDKKS---HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILA 430
N F KKS VL T + L+ + + +L G DYT ++GVGP TAL+++
Sbjct: 199 NMTFTKKSKDDKVLEITHAAVLEGLGLSNAEFVDFCILCGCDYTSTIRGVGPKTALKLVK 258
Query: 431 KFSPSDSPNQNYIVESMRRF--KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLK 488
+ ++ + R W + P RN+ N + +E
Sbjct: 259 EHGSIEAILAKGLKAKQRGDVPDEWDDADDGPFVPAYVGARNLFNNHEVTPCGDVE---- 314
Query: 489 PDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
L+WG PD GLR F + G+ + RV+ L + QR+
Sbjct: 315 ---------LSWGKPDEAGLRAFLVERMGFGEQRVEGALKRLTSAQGQRT 355
>gi|340709477|ref|XP_003393334.1| PREDICTED: flap endonuclease GEN-like [Bombus terrestris]
Length = 725
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 313 RPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
R +R + E +E+LQL G+ + GEAEA CA L G I+ DSD +L+GA+TV
Sbjct: 106 RTQFNRILNECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKTV 165
Query: 373 YKNFF--------DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVT 424
Y+NF V Y I EL R K+I LALL G DY GL GVG
Sbjct: 166 YRNFCTSTQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALALLCGCDYNDGLNGVGKEA 225
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFK 451
A+++ + D I+E M+ ++
Sbjct: 226 AMKLFKIVNDED------ILERMKSWR 246
>gi|407408222|gb|EKF31745.1| DNA repair protein RAD2, putative [Trypanosoma cruzi marinkellei]
Length = 734
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 106/193 (54%), Gaps = 11/193 (5%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
G+PF+++P EA+AQCA L V ++DSD+ + GA V + FF K +V+ Y D
Sbjct: 460 GIPFVLSPHEADAQCAFLSQQRLVDAVFSEDSDVIVHGATVVLRGFFSKNRYVVVYRQSD 519
Query: 391 IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS-PNQNYIVESMRR 449
+ + ++ L+ LALL+G DY G+ GV + AL I+A F +S +++++ + R
Sbjct: 520 LAMC-GVDKDVLVALALLLGCDYAEGVDGVSLLEALRIIAAFWHQESVQGPSHVLDMLTR 578
Query: 450 FKN--------WLAKKNKPDTHLT-RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
+++ W + ++L RK +++ DFP V V++A+ ++ +++ A
Sbjct: 579 WRDAVVQRRFVWEEEGVLLQSYLNWRKWSTLRVAADFPQVPVVDAFFNATVDADMRAFAV 638
Query: 501 GTPDLDGLRRFAA 513
+PD + LR FA
Sbjct: 639 ASPDWNRLRTFAG 651
>gi|449498163|ref|XP_002196947.2| PREDICTED: flap endonuclease GEN homolog 1 [Taeniopygia guttata]
Length = 617
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G + R + E E+L+ GVP++ A GEAEA CA L G +T+D D++L
Sbjct: 101 GAVRTGRSLFKAMLKECLEMLECLGVPWVQAAGEAEAMCAYLNAKGLVDGCLTNDGDVFL 160
Query: 367 FGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
+GA+TVY+NF K H+ YT I+ RE LI LA+L+G DY P G+ GVG
Sbjct: 161 YGAQTVYRNFAMNAKDPHLDSYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKE 220
Query: 424 TALEILAKFSPSDSPNQNYIVESMRRFKNW 453
AL+++ + ++RF+ W
Sbjct: 221 QALKLIETLQGEN---------LLQRFEQW 241
>gi|226478114|emb|CAX72750.1| Flap endonuclease 1 [Schistosoma japonicum]
Length = 389
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
+ ++LL+L GVPF+ APGEAEAQCA+L V T+D D FG + ++
Sbjct: 140 DCKQLLRLMGVPFVNAPGEAEAQCAALAKSGKVYAVGTEDMDALAFGTPVLLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + LT ++ + L +L+G DY ++G+GP AL++L K+ D
Sbjct: 200 RKMAIQEFNLASVLEGLSLTMDQFVDLCILLGCDYVDTIRGIGPKKALDLLHKYHSIDCV 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N + K P + +D+P + +L P++ + ++ +
Sbjct: 260 LKN------------IDKSKYP------------VPNDWPYEDAKKLFLNPEVTDPSLIE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL F +K G+++ R+
Sbjct: 296 LKWDEPDEEGLVEFLCHKHGFNEERI 321
>gi|307184932|gb|EFN71197.1| Flap endonuclease GEN [Camponotus floridanus]
Length = 738
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 21/161 (13%)
Query: 313 RPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
R +R + E +E+L+ G+ + + GEAEA CA L G ++ DSD +L+GA+ V
Sbjct: 107 RTQFNRVLNECKEMLKFMGIACVQSYGEAEAMCAYLNENGLVDGCVSQDSDCFLYGAKIV 166
Query: 373 YKNFFDKKSH-------VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
Y+NF K + + Y I + R K+I LALL G DY+ G+ GVG A
Sbjct: 167 YRNFCTSKGNNGATAGSIDVYNMEKIEKTLNIGRNKMIVLALLCGCDYSEGVNGVGKEAA 226
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTR 466
L+ F D N ++R +NW K DT L R
Sbjct: 227 LKF---FKTVDDEN------VLQRIQNW-----KTDTSLDR 253
>gi|452983877|gb|EME83635.1| hypothetical protein MYCFIDRAFT_154172 [Pseudocercospora fijiensis
CIRAD86]
Length = 788
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK-- 380
A++LL+ F P+ VAPGEAEA+CA L+ V+++D D +FG+ T +N+ +
Sbjct: 107 AKQLLKQFAFPWHVAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGTTLRNWTAESTN 166
Query: 381 ---SHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALEIL-AKFSPS 435
+HV Y A + + L RE +I +AL+ G DY T G+ G GP + A F
Sbjct: 167 KTPTHVNVYRAAETKEKSGLDREGMILVALMSGGDYITEGIPGCGPRVGCDAARAGF--- 223
Query: 436 DSPNQNYIVESMRR----FKNWLAK-----KNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+ + + RR K W + + H +RK +K+ DDFPN V+ Y
Sbjct: 224 ---GRELVNLAKRRDMSGLKAWRERLQHEIQTNESKHFSRKNNTLKIPDDFPNREVLGYY 280
Query: 487 LKPDINTNVQ------KLAWGTP-DLDGLRRFAANKFGW 518
P +T + L W D LR FA + F W
Sbjct: 281 TDPCTSTPEKLMRLRADLKWDQEIDFPALRSFAGDAFDW 319
>gi|189192965|ref|XP_001932821.1| flap structure-specific endonuclease [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978385|gb|EDU45011.1| flap structure-specific endonuclease [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 936
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 102/223 (45%), Gaps = 37/223 (16%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A++LL+ FG P +APGEAEA+CA L+ V+++D D +FG+ +N+ +KS
Sbjct: 104 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGITIRNWSPEKSG 163
Query: 382 ----HVLRYTAPDIRY-YFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI------- 428
HV Y A + + L RE +I +A++ G DY P G+ G GP TA E
Sbjct: 164 NTPTHVNVYDAVETKNGQSGLDREGMILVAMMSGGDYVPEGIPGCGPKTACEAAKAGFGA 223
Query: 429 -LAKFSPSDSPNQNYIVESMRRFKNWLAK-----KNKPDTHLTRKLRNVKLNDDFPNVSV 482
L K +D+ R W A+ K RK +K+ DDFP + +
Sbjct: 224 ELCKIPKNDA----------RAMSEWKARLQHELKTNESKIFKRKHGALKIPDDFPRLDI 273
Query: 483 IEAYLKPDINTNV------QKLAWGTP-DLDGLRRFAANKFGW 518
+ Y P I+ + + W D GLR F + F W
Sbjct: 274 LGYYTHPAISNQAGLDKLRRSINWDKELDFSGLREFTHDAFDW 316
>gi|317374937|sp|C5WU23.2|FEN12_SORBI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
Length = 428
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+RK + + LL+L GVP + APGEAEAQCA+L + V ++D D FGA
Sbjct: 156 KRTVKVTRKHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDSLTFGA 215
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R ++ D KKS V + + LT ++ I L +L G DY ++G+G AL
Sbjct: 216 RRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRAL 275
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + + QN + RF + +D+P V +
Sbjct: 276 KLIRQHGCIEEVLQNL---NQTRF---------------------SVPEDWPYQEVRTLF 311
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P+++ + W +PD +GL F + + +S +RV + +
Sbjct: 312 KEPNVSAGISDFTWTSPDTEGLMGFLSTENSFSPDRVTKAV 352
>gi|126344550|ref|XP_001362314.1| PREDICTED: flap endonuclease 1-like [Monodelphis domestica]
Length = 380
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 48/216 (22%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P++ APGEAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKQLLRLMGIPYLEAPGEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL----------EI 428
KK + + + LT+E+ + L +L+GSDY ++G+GP A+ EI
Sbjct: 200 KKLPIQEFHLSRVLQGLGLTQEQFVDLCILLGSDYCESIRGIGPKRAIDLIQQHKSIEEI 259
Query: 429 LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLK 488
+ K PS P +NWL K+ + HL +L+
Sbjct: 260 IRKLDPSKYPVP----------ENWLHKEAQ---HL---------------------FLE 285
Query: 489 PDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
PD+ + N +L WG PD +GL +F + ++++RV
Sbjct: 286 PDVLDVNTVELKWGEPDEEGLVQFMCGEKQFNEDRV 321
>gi|308504826|ref|XP_003114596.1| CRE-CRN-1 protein [Caenorhabditis remanei]
gi|308258778|gb|EFP02731.1| CRE-CRN-1 protein [Caenorhabditis remanei]
Length = 382
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
+ ++LL L G+P + AP EAEAQCA L G T+D D FG+ + ++
Sbjct: 140 DVKQLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTATEDMDALTFGSCVLLRHLLAPES 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I +LT E+ I L +L+G DY ++GVGP A+E++ ++
Sbjct: 200 KKIPIKEFHLARILEEMKLTEEEFIDLCILLGCDYCGTIRGVGPKRAVELINQYK----- 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
N I+E++ L K P +D+P E +L+PD+ + +
Sbjct: 255 NIETILENID-----LTKYPPP--------------EDWPYKRARELFLQPDVTKGEEIE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD++G+ RF +S+ R+ L + K
Sbjct: 296 LTWKEPDVEGIVRFMCGDKNFSEERIRSALTRMQK 330
>gi|295671342|ref|XP_002796218.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284351|gb|EEH39917.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 593
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 28/230 (12%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++R + +++L+QLF PF +APGEAEA+CA L+ V++DD D +FG+ N
Sbjct: 126 LARIIRRSKDLIQLFRFPFHIAPGEAEAECARLQTFGAVDAVMSDDVDTIMFGSNVTMMN 185
Query: 376 FFDKKS-------HVLRY----TAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
+ + S HV Y +A L R +I ALL G DY P G+ GP
Sbjct: 186 YSKENSSGTNAATHVTLYRTKESADGQIANVPLDRGGMILFALLSGGDYLPAGVPKCGPK 245
Query: 424 TALEI-LAKFS----PSDSPNQNYIVESMRRFKNWLAKKNKPDT--HLTRKLRNVKLNDD 476
A EI LA F S ++ + +R+++ L + +T + K + V++ D
Sbjct: 246 LAGEIALAGFGNELLQSVEGSEPEVAVKLRQWRERLQSQLHENTEGYFKCKHKAVQIPDS 305
Query: 477 FPNVSVIEAYLKPDINTNVQKL-------AWGTP-DLDGLRRFAANKFGW 518
FP++ ++ Y P + ++++KL W DL+GLR F N FGW
Sbjct: 306 FPDLRILRDYTHP-VVSSLEKLREAQLSFIWDQAIDLEGLRDFVENDFGW 354
>gi|413946273|gb|AFW78922.1| flap endonuclease 1a [Zea mays]
Length = 523
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+R+ E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA
Sbjct: 273 KRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASEDMDSLTFGA 332
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
++ D KK V+ + + ELT ++ I L +L G DY ++G+G TAL
Sbjct: 333 PRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTAL 392
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + +S I+E++ + + ++ +D+P +
Sbjct: 393 KLIRQHGSIES-----ILENLNKDR-------------------YQIPEDWPYQEARRLF 428
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P++ ++ +L W PD +GL F G++++RV + +
Sbjct: 429 KEPNVTLDIPELKWTAPDEEGLISFLVKDNGFNEDRVTKAI 469
>gi|449446177|ref|XP_004140848.1| PREDICTED: flap endonuclease GEN-like 2-like [Cucumis sativus]
Length = 563
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 106/226 (46%), Gaps = 21/226 (9%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EAQ L G+P + A EAEAQCA L G T DSD +LFGARTVY++
Sbjct: 124 EAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDICLGDS 183
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
HV+ Y DI R +I ALL+GSDY+ G+ G+G +A + L K + Q
Sbjct: 184 GHVVCYEMDDIETRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQ-LVKAVGDGAVLQ 242
Query: 441 NYIVESMRRFKNWLAKK--NKPDTHLTRKLRNVKL--NDDFPNVSVIEAYLKPDINTNVQ 496
E + LAKK N L + + D+F VI+AYLKP ++
Sbjct: 243 KITSEGLA-----LAKKGENSKKQGLPKSGHGHYMLKCDEFSE--VIDAYLKPKCHSADS 295
Query: 497 KLAWGTPDLD-----GLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ D L++ A F WS + D+ ++P KI++R
Sbjct: 296 EAVTRVLDQHPFQHVKLQQICAEFFEWSPEKTDENILP---KIAER 338
>gi|291387124|ref|XP_002710085.1| PREDICTED: Gen homolog 1, endonuclease [Oryctolagus cuniculus]
Length = 904
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 313 RPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
R + + E +LL G+P++ A GEAEA CA L + G +T+D D +L+GA+TV
Sbjct: 107 RSHFKLVLRECLDLLDCLGIPWVQAAGEAEAMCAYLNAEGYVDGCLTNDGDAFLYGAQTV 166
Query: 373 YKNFFD--KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL 429
Y+NF K HV Y+ I+ L R+ L+ LA+L+G DY P G+ GVG AL+++
Sbjct: 167 YRNFTMNVKDPHVDCYSMSSIKVQLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLI 226
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKN-KPDTHLTRKLRNVKL 473
++RF W K + P +T+KL + +
Sbjct: 227 QILKGQS---------LLQRFDQWNEKSHSNPQPAVTKKLAHCSV 262
>gi|351699459|gb|EHB02378.1| Flap endonuclease GEN-like protein 1 [Heterocephalus glaber]
Length = 910
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G+ + R + E E+L+ GVP++ A GEAEA CA L G +TDD D +L
Sbjct: 101 GSQRTGRSRFKLVLRECLEMLECLGVPWVQAAGEAEAMCAHLNGTGRADGCLTDDGDAFL 160
Query: 367 FGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
+GA+TVY+NF + HV YT I+ L R+ L+ LA+L+G DY P + GVG
Sbjct: 161 YGAQTVYRNFTMNAQDPHVDCYTMSSIKNKLGLDRDALVGLAILLGCDYLPKAIPGVGKE 220
Query: 424 TALEIL 429
AL ++
Sbjct: 221 QALTLI 226
>gi|225560221|gb|EEH08503.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 827
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 123/270 (45%), Gaps = 33/270 (12%)
Query: 282 LLQLFGVP---FIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAP 338
L++L G+P + G Q +L R + R + ++ L+ LF P AP
Sbjct: 64 LVRLTGLPVHPLFIYDGPQRPQYKRGKLIDRNNRAGDLGRIIRRSKHLIDLFRFPHHTAP 123
Query: 339 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS-------HVLRY----T 387
GEAEA+CA L+ V++DD D +FG++ NF + S HV Y +
Sbjct: 124 GEAEAECARLQTSGVVDAVMSDDVDAIMFGSKVTIMNFSKESSSGTNAATHVTLYQTEES 183
Query: 388 APDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKF------SPSDSPN 439
+ L R +I ALL G DY P G+ GP A EI+ A F + SP
Sbjct: 184 GDGRKRNVLLDRGAMILFALLSGGDYLPTGVPKCGPKLAGEIIQAGFGNELLQAIEGSPA 243
Query: 440 QNYI-VESMR-RFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN--- 494
+ + +E R R +N L + + H K + VK+ D FP++ V+ Y P ++++
Sbjct: 244 EVAVKLEKWRERLRNELHENG--EGHFKCKHKAVKIPDCFPDLKVLGDYTHPVVSSSEKL 301
Query: 495 ---VQKLAWGTP-DLDGLRRFAANKFGWSQ 520
+ W D++GLR F N FGW +
Sbjct: 302 NELQRSFKWDQAIDIEGLRNFVWNDFGWQR 331
>gi|242032391|ref|XP_002463590.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
gi|241917444|gb|EER90588.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
Length = 477
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+RK + + LL+L GVP + APGEAEAQCA+L + V ++D D FGA
Sbjct: 205 KRTVKVTRKHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDSLTFGA 264
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R ++ D KKS V + + LT ++ I L +L G DY ++G+G AL
Sbjct: 265 RRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRAL 324
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + + QN + RF + +D+P V +
Sbjct: 325 KLIRQHGCIEEVLQNL---NQTRF---------------------SVPEDWPYQEVRTLF 360
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P+++ + W +PD +GL F + + +S +RV + +
Sbjct: 361 KEPNVSAGISDFTWTSPDTEGLMGFLSTENSFSPDRVTKAV 401
>gi|300706556|ref|XP_002995534.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
gi|239604679|gb|EEQ81863.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
Length = 563
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
+++L++F +P++ +P E++AQCASL GVIT+DSDI L G VYKNFF K ++
Sbjct: 396 KDILKIFNMPYLDSPSESDAQCASLCKSGVVDGVITEDSDILLHGG-VVYKNFFRKNKYI 454
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+Y I L+ LI L ++GSDYT G++G+G A+E +
Sbjct: 455 TKYDPKKIYEVMGLSLNDLISLGYILGSDYTVGIKGIGIKKAVEYI 500
>gi|296224442|ref|XP_002758061.1| PREDICTED: flap endonuclease GEN homolog 1 [Callithrix jacchus]
Length = 909
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAVGRVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV Y I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYKMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNW--LAKKNKPDTHLTRKLRNVKL 473
AL+++ ++RF W + + P+ +T+KL + +
Sbjct: 222 ALKLIQILKGQS---------LLQRFNRWNETSCNSSPEPLVTKKLAHCSI 263
>gi|308499054|ref|XP_003111713.1| hypothetical protein CRE_03137 [Caenorhabditis remanei]
gi|308239622|gb|EFO83574.1| hypothetical protein CRE_03137 [Caenorhabditis remanei]
Length = 447
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 26/249 (10%)
Query: 310 KKRRPY-------VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 362
+KRR + ++ +++ LL FGV I+APG+ EAQCA LE G IT D
Sbjct: 96 RKRRSFGDSPFTNLADHVIKTNSLLSHFGVKVIIAPGDGEAQCARLEELGVVSGCITTDF 155
Query: 363 DIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYF--------ELTREKLIQLALLVGSDYT 414
D +LFG + +Y+ F + + D+ + ++ R LI A+L+G DY
Sbjct: 156 DYFLFGGKNLYRFDFSATTMLSGARLHDVTHLSLGRMNIEKKVARPHLIATAILLGCDYY 215
Query: 415 P-GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKK---NKPDTHLTRKLRN 470
G+Q +G +T +ILA+F + + V + RF +++ ++ D+ +LR
Sbjct: 216 QRGVQNIGIITVFDILAEFGDNGCKETDPQV-ILDRFSSYVRREIPARSEDSSRKLRLRG 274
Query: 471 VKLN--DDFPNVS----VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
K N D FPN + I+ Y++P ++ + ++ + + + GWS R+
Sbjct: 275 KKFNFPDGFPNCTAVGNAIKMYMQPAVSNQIPRITSQITNFQKVEEILVKECGWSPQRLQ 334
Query: 525 QTLIPIMKK 533
+ + M +
Sbjct: 335 REVTTSMTR 343
>gi|169606572|ref|XP_001796706.1| hypothetical protein SNOG_06329 [Phaeosphaeria nodorum SN15]
gi|160707030|gb|EAT86160.2| hypothetical protein SNOG_06329 [Phaeosphaeria nodorum SN15]
Length = 739
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 107/221 (48%), Gaps = 31/221 (14%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK-- 380
A++LL+ FG P +APGEAEA+CA L+ V+++D D +FG+ +N+ +K
Sbjct: 57 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGITIRNWSPEKGS 116
Query: 381 -----SHVLRYTAPDIRYYFE-LTREKLIQLALLVGSDYTP-GLQGVGPVTALEI----- 428
+HV Y A + + L R+ +I +AL+ G DY P G+ G GP TA E
Sbjct: 117 SGKTPTHVNVYDAVETKSGPSGLDRDGMILVALMSGGDYVPEGIPGCGPKTACEAAKAGF 176
Query: 429 ---LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
L + SD + + E R ++ L K RK +K+ DDFP + ++
Sbjct: 177 GRDLCRIPTSD---KRAMSEWRERLQHEL--KTNESKLFRRKHGTLKIPDDFPRLDILGY 231
Query: 486 YLKPDINTNV------QKLAWGTPDLD--GLRRFAANKFGW 518
Y P I+ V + + W DLD GLR F + F W
Sbjct: 232 YTHPAISNQVGLDKLRRSINWDQ-DLDFPGLRDFTHDAFDW 271
>gi|357441985|ref|XP_003591270.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480318|gb|AES61521.1| Flap endonuclease 1a [Medicago truncatula]
Length = 384
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + AP EAEAQCA+L V ++D D FGA ++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + I +LT ++ I L +L G DY ++G+G +TAL+++ + +
Sbjct: 201 KKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKI 260
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN--VQ 496
+N S R+ ++ DD+P + +P+++T+ V
Sbjct: 261 LENI---SKERY---------------------QVPDDWPYQEARRLFKEPEVSTDDEVL 296
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
L W PD +GL F N+ G++ +RV + +
Sbjct: 297 NLKWSPPDEEGLITFLVNENGFNSDRVTKAI 327
>gi|154276716|ref|XP_001539203.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414276|gb|EDN09641.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 826
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 123/270 (45%), Gaps = 33/270 (12%)
Query: 282 LLQLFGVP---FIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAP 338
L++L G+P + G Q +L R + R + ++ L+ LF P AP
Sbjct: 65 LVRLTGLPVHPLFIYDGPQRPQYKRGKLIDRNNRVGDLGRIIRRSKHLIDLFHFPHHTAP 124
Query: 339 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS-------HVLRY----T 387
GEAEA+CA L+ V++DD D +FG++ NF + S HV Y +
Sbjct: 125 GEAEAECARLQSSGVVDAVMSDDVDAIMFGSKVTIMNFSKENSSGTNAATHVTLYQTEES 184
Query: 388 APDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKF------SPSDSPN 439
+ L R +I ALL G DY P G+ GP A EI+ A F + SP
Sbjct: 185 GDGRKRNVLLDRGAMILFALLSGGDYLPTGVPKCGPKLAREIIQAGFGNELLQAIEGSPA 244
Query: 440 QNYI-VESMR-RFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN--- 494
+ + +E R R +N L + + H K + VK+ D FP++ V+ Y P ++++
Sbjct: 245 EVAVKLEKWRERLRNELHENG--EGHFRCKHKAVKIPDCFPDLKVLGDYTHPVVSSSEKL 302
Query: 495 ---VQKLAWGTP-DLDGLRRFAANKFGWSQ 520
+ W D++GLR F N FGW +
Sbjct: 303 NELQRSFKWDQAIDIEGLRNFVWNDFGWQR 332
>gi|357441987|ref|XP_003591271.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480319|gb|AES61522.1| Flap endonuclease 1a [Medicago truncatula]
Length = 369
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + AP EAEAQCA+L V ++D D FGA ++ D
Sbjct: 126 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSS 185
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + I +LT ++ I L +L G DY ++G+G +TAL+++ + +
Sbjct: 186 KKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKI 245
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN--VQ 496
+N S R+ ++ DD+P + +P+++T+ V
Sbjct: 246 LENI---SKERY---------------------QVPDDWPYQEARRLFKEPEVSTDDEVL 281
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
L W PD +GL F N+ G++ +RV + +
Sbjct: 282 NLKWSPPDEEGLITFLVNENGFNSDRVTKAI 312
>gi|291242835|ref|XP_002741315.1| PREDICTED: flap endonuclease 1-like [Saccoglossus kowalevskii]
Length = 334
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 99/231 (42%), Gaps = 45/231 (19%)
Query: 311 KRRPYVSRKML-----EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIW 365
+++P + R L E +LL + GVP+I A GEAEA CA L GV T+D D +
Sbjct: 98 EKKPGMQRTRLKTLQYECCKLLDVLGVPYIQATGEAEAMCALLNKEGLVDGVFTEDGDAF 157
Query: 366 LFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGP 422
L+GA+ VYKN SHV Y DI L R KLI +ALL+G DY + G+ VG
Sbjct: 158 LYGAKKVYKNLTAGSNGSHVDVYDMLDIEEKLTLNRNKLIAMALLMGCDYLSDGVPSVGK 217
Query: 423 VTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDT-------------------- 462
A +++ ++ + RF W +K++ D
Sbjct: 218 TNATQLMHSLGD---------IDVLERFHEWTQEKSQDDDPNQIVTSDEDDDGRSIKRKR 268
Query: 463 -------HLTRKLRNVKLN-DDFPNVSVIEAYLKPDINTNVQKLAWGTPDL 505
L K++ L D FPN VI+ +L P TPD
Sbjct: 269 RKKKRKLTLEEKIKCKALKIDGFPNQKVIDEFLIPKDVVPSTPFQHATPDF 319
>gi|328792793|ref|XP_001120033.2| PREDICTED: flap endonuclease GEN-like [Apis mellifera]
Length = 713
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 78/166 (46%), Gaps = 22/166 (13%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KK R + + E +E+L+ G+ + GEAEA CA L G I+ DSD +L+GA
Sbjct: 103 KKGRTQFKKILNECKEMLEYMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGA 162
Query: 370 RTVYKNFFDKK--------SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVG 421
+ VY+NF V Y I +L R K+I LALL G DY GL GVG
Sbjct: 163 KVVYRNFCTSAQGNRGGTGGAVDEYRLEKIEKVLQLGRNKMIVLALLCGCDYDDGLNGVG 222
Query: 422 PVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRK 467
A+++ D I+E R KNW K DT L RK
Sbjct: 223 KEAAMKLFKIVENKD------IIE---RIKNW-----KTDTSLDRK 254
>gi|400597409|gb|EJP65142.1| DNA repair endonuclease rad2 [Beauveria bassiana ARSEF 2860]
Length = 808
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 17/213 (7%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK-- 379
+A+ L++LFG+P + APGEAEA+CA L+ V+++D D +FG +N+ +
Sbjct: 102 QAKRLIRLFGLPALDAPGEAEAECALLQRHGIVDAVLSEDVDTIMFGCTKTLRNWSAEGK 161
Query: 380 ----KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFS 433
+HV Y + + L R+ ++ +AL+ G DY P GL G G A E A F
Sbjct: 162 TVTVPTHVSLYDTAAVANH-GLDRQGMVLVALMSGGDYLPDGLPGCGVKVACEAANAGFG 220
Query: 434 PSDSPNQNYIVESMRRFKNWLAKK--NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
S + S+ ++ L + H K +++ + DDFPN+ ++ Y P +
Sbjct: 221 SSLCKLKTSDTASIDAWRAELRHELVTNESGHFRTKHKSLNIPDDFPNMEILRYYTHPVV 280
Query: 492 N--TNV----QKLAWGTPDLDGLRRFAANKFGW 518
+ TN+ QKL T DL LR FA F W
Sbjct: 281 SPKTNLETIRQKLQPMTIDLASLREFARETFDW 313
>gi|350420439|ref|XP_003492509.1| PREDICTED: flap endonuclease GEN-like [Bombus impatiens]
Length = 724
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
K R +R + E +E+LQL G+ + GEAEA CA L G I+ DSD +L+GA
Sbjct: 103 KGGRTQFNRILNECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGA 162
Query: 370 RTVYKNFF--------DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVG 421
+ VY+NF V Y I EL R K+I LALL G DY GL GVG
Sbjct: 163 KVVYRNFCTSTQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALALLCGCDYNDGLNGVG 222
Query: 422 PVTALEILAKFSPSDSPNQNYIVESMRRFKNW 453
A+++ + D ++R K+W
Sbjct: 223 KEAAMKLFKIVNDKD---------ILQRMKSW 245
>gi|325090233|gb|EGC43543.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 827
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 121/268 (45%), Gaps = 33/268 (12%)
Query: 282 LLQLFGVP---FIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAP 338
L++L G+P + G Q +L R + R + ++ L+ LF P AP
Sbjct: 64 LVRLTGLPVHPLFIYDGPQRPQYKRGKLIDRNNRAGDLGRIIRRSKHLIDLFRFPHHTAP 123
Query: 339 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS-------HVLRY----T 387
GEAEA+CA L+ V++DD D +FG++ NF + S HV Y +
Sbjct: 124 GEAEAECARLQTSGVVDAVMSDDVDAIMFGSKVTIMNFSKESSSGTNAATHVTLYQTEES 183
Query: 388 APDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKF------SPSDSPN 439
+ L R +I ALL G DY P G+ GP A EI A F + SP
Sbjct: 184 GNGRKRNVLLDRGAMILFALLSGGDYLPTGVPKCGPKLAGEITQAGFGNELLQAIEGSPA 243
Query: 440 QNYI-VESMR-RFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN--- 494
+ + +E R R +N L + + H K + VK+ D FP++ V+ Y P ++++
Sbjct: 244 EVAVKLEKWRERLRNELHENG--EGHFKCKHKAVKIPDCFPDLKVLGDYAHPVVSSSEKL 301
Query: 495 ---VQKLAWGTP-DLDGLRRFAANKFGW 518
+ W D++GLR F N FGW
Sbjct: 302 NELQRSFKWDQAIDIEGLRNFVWNDFGW 329
>gi|242091235|ref|XP_002441450.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
gi|317374865|sp|C5YUK3.1|FEN11_SORBI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|241946735|gb|EES19880.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
Length = 380
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + AP EAEA+CA+L + V ++D D FGA ++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAECAALCKNDKVFAVASEDMDSLTFGAPRFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + ELT ++ I L +L G DY ++G+G TAL+++ + +S
Sbjct: 201 KKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIES- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + ++ +D+P + +P++ +V +L
Sbjct: 260 ----ILENLNKDR-------------------YQIPEDWPYQEARRLFKEPNVTLDVPEL 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL F G++++RV + +
Sbjct: 297 KWTPPDEEGLISFLVKDNGFNEDRVTKAI 325
>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
gi|122094730|sp|Q178M1.1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|108878396|gb|EAT42621.1| AAEL005870-PA [Aedes aegypti]
Length = 380
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 28/218 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ELL+L GVP++ AP EAEAQCA+L G T+D D FG+ + ++
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATATEDMDALTFGSNILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + I ELTR++ I L +L+G DY ++G+GP A+E++ K +
Sbjct: 200 RKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDYCDSIRGIGPKKAVELINKHRTIEKI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N + +NW ++ V+ + +P++ N +
Sbjct: 260 LENLDTKKYVVPENW----------------------NYQQARVL--FKEPEVANPEEVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
L WG PD +GL ++ ++++R+ I+K S
Sbjct: 296 LKWGEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKS 333
>gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max]
gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|255640175|gb|ACU20378.1| unknown [Glycine max]
Length = 382
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + AP EAEAQCA+L GV+++D D FGA ++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYGVVSEDMDSLTFGAPKFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + I +T ++ I L +L G DY ++G+G +TAL+++ + ++
Sbjct: 201 KKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENI 260
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+N E + NW P + +P + T+ ++L
Sbjct: 261 PENLNKERYQIPDNW------------------------PYQEARRLFKEPLVITDEKEL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W +PD +GL F N+ G++++RV + +
Sbjct: 297 DIKWSSPDEEGLITFLVNENGFNRDRVTKAI 327
>gi|452840124|gb|EME42062.1| hypothetical protein DOTSEDRAFT_174868 [Dothistroma septosporum
NZE10]
Length = 393
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 29/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
EAQ LL+L GVPFI+AP EAEAQCA L ++D D F + + ++ F ++
Sbjct: 140 EAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDSPVLLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + E+ +++ I L +L+G DY ++G+GP ALE++ K ++
Sbjct: 200 RKEPIQEIFLDRVLEGLEMDQKQFIDLCILLGCDYLDPVKGIGPKVALELIKKHKTLEN- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+VE +++ + L +D+P +L+PD++
Sbjct: 259 ----VVEEIKKGSKY------------------TLPEDWPFADARALFLEPDVHKADHPD 296
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W +PD++GL +F + G+S++RV
Sbjct: 297 CDFKWESPDVEGLVKFLVEEKGFSEDRV 324
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + EAQ LL+L GVPFI+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAEAQRLLKLMGVPFIIAPTEAEAQCAVL 166
>gi|407922590|gb|EKG15687.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 691
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 20/215 (9%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK-- 380
A++LL+ FG PF +APGEAEA+CA L+ V+++D D +FG+R +N+ ++
Sbjct: 104 AKQLLKQFGFPFHIAPGEAEAECALLQREGIVDVVLSEDVDTLMFGSRITLRNWSPEQKS 163
Query: 381 ----SHVLRYTAPDIRYYFE-LTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFS 433
+HV Y A + L RE +I +AL+ G DY P G+ G GP TA E A F
Sbjct: 164 SKVPTHVNVYDAGKTKSGPSGLDREGMILVALMSGGDYLPEGIPGCGPKTACEAARAGFG 223
Query: 434 PSDSPNQNYIVESMRRFKNWLAK--KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +++ ++ LA+ + RK + + +DFP ++ Y+ P I
Sbjct: 224 HRLCAIKKKDTAALQAWREDLARELRTNESKFFKRKHGTLSVPEDFPRADILGYYVSPAI 283
Query: 492 NTN------VQKLAWGTPDLD--GLRRFAANKFGW 518
++ + L W DL+ GLR F A+ F W
Sbjct: 284 SSPEALERLKRNLRWDQ-DLNFAGLRTFTADAFEW 317
>gi|71425588|ref|XP_813131.1| DNA repair protein RAD2 [Trypanosoma cruzi strain CL Brener]
gi|70877987|gb|EAN91280.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 108/193 (55%), Gaps = 11/193 (5%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
G+PF+++P EA+AQCA L V ++DSD+ + GA V + FF K +V+ Y D
Sbjct: 470 GIPFVLSPHEADAQCAFLSQQRLVDAVFSEDSDVIVHGANVVLRGFFSKNRYVVVYRQSD 529
Query: 391 IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS-PNQNYIVESMRR 449
+ + ++ L+ LALL+G DY G+ GV + AL I+ F +S +++++ ++R
Sbjct: 530 L-AMCGVDKDVLVALALLLGCDYAEGVDGVSLLEALRIITAFWHQESVQGPSHVLDMLKR 588
Query: 450 FKNWLAKKNKP--------DTHLT-RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
+++ +A++ ++L R+ +++ DFP V V++A+ ++ +++ A
Sbjct: 589 WRDAVAQRRFVWEEEGVLLQSYLNWRRWSTLRVAADFPQVPVVDAFFNATVDADMRPFAV 648
Query: 501 GTPDLDGLRRFAA 513
+P+ + LR FA
Sbjct: 649 ASPEWNRLRTFAG 661
>gi|391334775|ref|XP_003741776.1| PREDICTED: flap endonuclease 1-like [Metaseiulus occidentalis]
Length = 379
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
+AQ LL L GVPF+VAP EAEAQCA L T+D D FGA + ++
Sbjct: 140 DAQRLLALMGVPFLVAPCEAEAQCAELVKAQKVYAAATEDMDCLTFGASVLLRHMTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + P I T+ + I L +L+G DY ++G+GP A+E++
Sbjct: 200 RKMPIKEFNLPKILAELNFTQREFIDLCILLGCDYCGTIKGIGPKRAIELM--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+ +E++ KN KK P +D+ E + KPD+ +
Sbjct: 251 RSHRCIENV--LKNIDTKKYPPP-------------EDWQFERARELFEKPDVTPGSELD 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD +GL +F + G+++ R+
Sbjct: 296 FKWTEPDEEGLVKFLCEENGFNEERI 321
>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
Length = 380
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 31/224 (13%)
Query: 307 GTDKKRRPYV---SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
G DK + V S E +ELL+L GVPF+ AP EAEAQCA++ T+D D
Sbjct: 122 GIDKFSKRLVKVTSTHTTECKELLKLMGVPFVEAPCEAEAQCAAMVKAGKVYATATEDMD 181
Query: 364 IWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGV 420
FG+ + ++ +K + + + E++R++ I L +L+G DY ++GV
Sbjct: 182 ALTFGSPVLLRHMTFSEARKMPIQEFQLDSVLETMEMSRDEFIDLCILLGCDYCNSIKGV 241
Query: 421 GPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNV 480
GP A+E++ ++ ++ I+E++ DT + ++ +D+P
Sbjct: 242 GPKRAIELMRQYKSLEN-----IIENL-------------DT------KKYQVPEDWPYK 277
Query: 481 SVIEAYLKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+++P+I + L W PD +GL +F G++++RV
Sbjct: 278 EARRLFIEPEITDPETIDLKWIDPDEEGLVKFLCGNRGFNEDRV 321
>gi|330914144|ref|XP_003296510.1| hypothetical protein PTT_06636 [Pyrenophora teres f. teres 0-1]
gi|311331271|gb|EFQ95374.1| hypothetical protein PTT_06636 [Pyrenophora teres f. teres 0-1]
Length = 934
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A++LL+ FG P +APGEAEA+CA L+ V+++D D +FG+ +N+ +KS
Sbjct: 104 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGITIRNWSPEKSG 163
Query: 382 ----HVLRYTAPDIRY-YFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI------- 428
HV Y A + + L RE +I +A++ G DY P G+ G GP TA E
Sbjct: 164 NTPTHVNVYDAVETKNGQSGLDREGMILVAMMSGGDYVPEGIPGCGPKTACEAAKAGFGA 223
Query: 429 -LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
L K +D+ + E R ++ L K RK +K+ +DFP + ++ Y
Sbjct: 224 ELCKIPKNDA---RAMSEWKVRLQHEL--KTNESKIFKRKHGALKIPEDFPRLDILGYYT 278
Query: 488 KPDINTNV------QKLAWGTP-DLDGLRRFAANKFGW 518
P I+ + + W D GLR F + F W
Sbjct: 279 HPAISNQAGLDKLRRSINWDKELDFSGLREFTHDAFDW 316
>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
gi|166973703|sp|A5UL52.1|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
[Methanobrevibacter smithii ATCC 35061]
Length = 327
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 48/224 (21%)
Query: 311 KRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 370
K PY+ + +++LL + G+P+I A GE EAQ A L V + D D LFGA+
Sbjct: 126 KLSPYI---IESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAK 182
Query: 371 TVYKNFFDKKSHVLRYTAPDIRYY--------FELTREKLIQLALLVGSDYTPGLQGVGP 422
V +N + D+ YY ++ RE+LI + +L+G+D++ GL+GVG
Sbjct: 183 RVVRNL------AINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGA 236
Query: 423 VTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSV 482
TAL++ K +N LAK + +H ++R
Sbjct: 237 KTALKLAKK----------------GELENKLAKLQEESSHDISEVR------------- 267
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQT 526
E +L ++NTN K+ W P + + F + G+SQ+RV +
Sbjct: 268 -EIFLNHNVNTNY-KIRWKKPAKNDIIDFLCEEHGFSQDRVSKA 309
>gi|320582300|gb|EFW96517.1| 5' to 3' exonuclease, 5' flap endonuclease [Ogataea parapolymorpha
DL-1]
Length = 374
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 26/224 (11%)
Query: 305 ELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
EL +KR+ V+R+ E AQ LL+L G+P+++AP EAEAQCA L ++D D
Sbjct: 123 ELQRFEKRQVKVTREQNEQAQHLLRLMGIPYVIAPCEAEAQCAELARKGKVYAAASEDMD 182
Query: 364 IWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGV 420
+ +N KK V +T + F + + L +L+G DY ++G+
Sbjct: 183 TLCYQPPFFLRNVTAAESKKLKVDEFTTSAVLEGFGMDINTFVDLCILLGCDYCETIKGI 242
Query: 421 GPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNV 480
GPVTA +++ + + I+E + +N P K+ +++P
Sbjct: 243 GPVTAFKLIKEHGSIEK-----IIEFI---------ENDPKCKY-------KVPENWPYN 281
Query: 481 SVIEAYLKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
E +L P++ N + L W PDLDGL F + G+++ R+
Sbjct: 282 EARELFLNPEVLNGDDIDLKWTDPDLDGLIEFMVKENGFNEQRI 325
>gi|440492480|gb|ELQ75044.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 728
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 251 EKDRDQLL-LERGKQTRLASTITE--QMSREAQELLQLFGVPFIVAPGEAEAQCASL--- 304
E+ RD++ LER +TR + + E ++ +++L + G+P+I AP E+++Q L
Sbjct: 488 ERVRDRMASLERNIRTRSINLMNELQCITVLMKKMLTILGIPYIDAPYESDSQLGYLNNE 547
Query: 305 -ELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
EL ++++ + + E + Q+F +A +IT+D+D
Sbjct: 548 CELERNERKSVFNPEEKCEHLDTNQVFNDKIYNLKVDA---------------IITEDND 592
Query: 364 IWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPV 423
++LFGA VYK++F K L YT +IR L RE LI+L++ +G+DYT G +G+GP
Sbjct: 593 VFLFGANRVYKDYF--KCPKL-YTMQNIRDKLNLNREDLIKLSVFLGNDYTVGFRGIGPK 649
Query: 424 TALEIL 429
ALEIL
Sbjct: 650 KALEIL 655
>gi|413932541|gb|AFW67092.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 411
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + APGEAEAQCA+L + V ++D D FGAR ++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDTLTFGARRFLRHLTDLGY 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KKS V + + LT ++ I L +L G DY ++G+G AL+++ + +
Sbjct: 201 KKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGCIEEV 260
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
QN + RF + +D+P V + +P++ +
Sbjct: 261 LQNL---NQTRF---------------------SVPEDWPYQEVRTLFKEPNVCAGIPDF 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W +PD +GL F + + +S +RV + +
Sbjct: 297 TWTSPDPEGLMDFLSTENSFSPDRVTKAV 325
>gi|149239008|ref|XP_001525380.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
gi|317374907|sp|A5E121.1|FEN1_LODEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146450873|gb|EDK45129.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 384
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLELMGIPYVNAPCEAEAQCAELARGGKVFAAASEDMDTLCYEPPQLLRHLTFAEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + T + ++T+E+ I L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 201 RKMPIDQITYKEAIQGLDMTKEQFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
IV+ ++ PD K+ +++P + ++KP++ ++ +
Sbjct: 260 ----IVKYLQ---------ENPDK------TKYKVPENWPYNEARQLFMKPEVLPALEVE 300
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PDLDGL + G+S++R+
Sbjct: 301 LKWKEPDLDGLIEYMVKNKGFSEDRI 326
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 264 QTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
Q RL +Q + EA++LL+L G+P++ AP EAEAQCA L G
Sbjct: 128 QKRLVRVSRDQ-NDEAKKLLELMGIPYVNAPCEAEAQCAELARG 170
>gi|124360865|gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
Length = 547
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 305 ELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDI 364
E G R SR + E EL +L G+P + A GEAEA CA L H IT DSD
Sbjct: 40 EEGVSAGRNSTFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDA 99
Query: 365 WLFGARTVYKNFF-DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGP 422
+LFGA+ + K+F + K Y DI L R+ LI ++LLVG+D+ G+QG+G
Sbjct: 100 FLFGAKCIIKSFSPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGI 159
Query: 423 VTALEILAKFSPSD 436
+AL + F D
Sbjct: 160 DSALRFVQAFGEDD 173
>gi|226288989|gb|EEH44501.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 566
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++R + +++L++LF P+ +APGEAEA+CA L+ V++DD D +FG+R N
Sbjct: 101 LARIIRRSKDLIKLFRFPYHIAPGEAEAECARLQTFGAVDAVMSDDVDTIMFGSRVTIMN 160
Query: 376 FFDKKS-------HVLRY----TAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
+ + S HV Y +A L R +I ALL G DY P G+ GP
Sbjct: 161 YSKEDSSGTNAATHVTLYRTKESADGQIANVPLDRGGMILFALLSGGDYLPAGVPKCGPK 220
Query: 424 TALEI-LAKFS----PSDSPNQNYIVESMRRFKNWLAKKNKPDT--HLTRKLRNVKLNDD 476
A EI LA F S +++ + +R+++ L + +T + K + V++ D
Sbjct: 221 LAGEIALAGFGNELLQSVEGSESELAVKLRQWRERLQSQLHENTEGYFKCKHKAVQIPDS 280
Query: 477 FPNVSVIEAYLKPDINTNVQ------KLAWGTP-DLDGLRRFAANKFGWSQN 521
FP++ ++ Y P +++ + W DL+GLR F FGW +
Sbjct: 281 FPDLKILRDYTHPVVSSPEKLREAQLSFIWDQAIDLEGLRDFVEKDFGWRRG 332
>gi|356532054|ref|XP_003534589.1| PREDICTED: flap endonuclease GEN-like 1-like [Glycine max]
Length = 607
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 300 QCASLEL--------GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELG 351
+C+ +EL G +R S + E EL++L G+P + A GEAEA CA L
Sbjct: 93 RCSGIELANLPVPEEGVSAERNRLFSSHVQECAELVELLGMPVLKAKGEAEALCAQLNSE 152
Query: 352 NHTQGVITDDSDIWLFGARTVYKNFF-DKKSHVLRYTAPDIRYYFELTREKLIQLALLVG 410
H IT DSD +LFGA+ + K F + K Y DI L R+ LI ++LLVG
Sbjct: 153 GHVDACITADSDAFLFGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVG 212
Query: 411 SDY-TPGLQGVGPVTALEILAKFSPSDSPNQ 440
D+ G++G+G TAL + FS D N+
Sbjct: 213 DDHDINGVRGIGLDTALHFVKAFSEDDILNR 243
>gi|367031946|ref|XP_003665256.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
gi|347012527|gb|AEO60011.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
Length = 395
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L GVP+IVAP EAEAQCA L ++D D F A + ++
Sbjct: 140 ECQRLLKLMGVPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDAPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ + L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPIQEIHVSKVLEGLNMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE M KN P T + DD+P E + PD+ L
Sbjct: 259 ----VVEFM---------KNDPKGRYT-------VPDDWPFEDARELFFSPDVRQADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F ++ G+S++RV
Sbjct: 299 CDFKWEKPDIEGLVQFLVHEKGFSEDRV 326
>gi|410926473|ref|XP_003976703.1| PREDICTED: flap endonuclease GEN homolog 1-like [Takifugu rubripes]
Length = 827
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--DK 379
E ++L + GVP++ A GEAEA CA L+ G IT+D D +L+GA+ VY+NF K
Sbjct: 117 ECADMLDILGVPWVTAAGEAEAMCAFLDSQGLVDGCITNDGDAFLYGAQIVYRNFHTNSK 176
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL 429
V Y ++ L+RE L+ LA+L+G DY P G+ GVG AL++L
Sbjct: 177 DPLVDCYKTSRVQTELHLSRENLVGLAVLLGCDYIPKGIPGVGKEQALKLL 227
>gi|410909029|ref|XP_003967993.1| PREDICTED: flap endonuclease 1-like [Takifugu rubripes]
Length = 380
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 34/218 (15%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E ++LL L GVP+I AP EAEA CA+L T+D D FG + ++ ++
Sbjct: 140 ECKKLLTLMGVPYIEAPCEAEASCAALVKAGKVFATATEDMDGLTFGTNVLLRHLTASEA 199
Query: 382 HVLRYTAPDIRYYFE-------LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
L P ++F LT E+ I L +L+G DY ++G+GP A++++ +
Sbjct: 200 KKL----PIQEFHFSRVLQETGLTNEQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGS 255
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ +N ++WL K + R + +N D + S +E
Sbjct: 256 IEEILENIDTNKYPSPEDWLFK----------EARGLFVNPDVVDCSTVE---------- 295
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L WG PD DGL +F N+ +S++R+ I+K
Sbjct: 296 ---LKWGEPDEDGLIQFMCNEKQFSEDRIRNGCKKIVK 330
>gi|407847469|gb|EKG03173.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 107/193 (55%), Gaps = 11/193 (5%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
G+PF+++P EA+AQCA L V ++DSD+ + GA V + FF K +V+ Y D
Sbjct: 470 GIPFVLSPHEADAQCAFLSQQRLVDAVFSEDSDVIVHGANVVLRGFFSKNRYVVVYRQSD 529
Query: 391 IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS-PNQNYIVESMRR 449
+ + ++ L+ LALL+G DY G+ GV + AL I+ F +S +++++ + R
Sbjct: 530 L-AMCGVDKDVLVALALLLGCDYAEGVDGVSLLEALRIITAFWHQESVQGPSHVLDMLTR 588
Query: 450 FKNWLAKKNKP--------DTHLT-RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
+++ +A++ ++L R+ +++ DFP V V++A+ ++ +++ A
Sbjct: 589 WRDAVAQRRFVWEEEGVLLQSYLNWRRWSTLRVAADFPQVPVVDAFFSATVDADMRPFAV 648
Query: 501 GTPDLDGLRRFAA 513
+P+ + LR FA
Sbjct: 649 ASPEWNRLRTFAG 661
>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
gi|317374890|sp|B4J6M4.1|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
Length = 388
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + ELT ++ I L +L+G DY ++GVGP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIRGVGPKRAIELIKSYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N +NW K+ + E +++PD+ + +
Sbjct: 260 LENIDTNKYAVPENWNYKRAR------------------------ELFIEPDVTDASTID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD DGL +F +++ RV
Sbjct: 296 LKWTDPDEDGLVQFLCGDRQFNEERV 321
>gi|167378108|ref|XP_001734673.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165903695|gb|EDR29139.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 755
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 324 QELLQLF---GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
Q+L+++F +P+I+APGEAEAQC LE + T+DSDI+++GA+ V KN F
Sbjct: 563 QKLIKMFKEINIPYIIAPGEAEAQCYQLEHDGLCDYIATNDSDIFVYGAKNVIKNLF-TS 621
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
SH L Y++ F+ + +++ +LLV SDY+ G+ +GP++A +I+ F
Sbjct: 622 SHPLLYSSST----FDYSLDQIRLYSLLVPSDYSNGIPNIGPISAKKIINSF 669
>gi|358333862|dbj|GAA32436.2| flap endonuclease-1 [Clonorchis sinensis]
Length = 350
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
+ +ELL+L GVP+I APGEAEAQCA+L V T+D D FG + ++
Sbjct: 104 DCKELLRLMGVPYIKAPGEAEAQCAALAKAGKVYAVGTEDMDALAFGCPVLLRHLTFSEA 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + P + EL+ ++ + L +L+G DY ++G+GP A+++L K
Sbjct: 164 RKLPIQEFNLPSVLAGLELSMDQFVDLCILLGCDYVDTIRGIGPKKAIDLLRK------- 216
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
I E ++ + + +++P + ++ P+I + +
Sbjct: 217 -HKSIEEVLKNIDH----------------SKYPVPEEWPYEEAKKLFVTPEIEDPEKIE 259
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ W PD +GL F +K G+++ RV +MK
Sbjct: 260 IKWSEPDEEGLVAFLCHKHGFNEERVRNGAKKLMK 294
>gi|330797354|ref|XP_003286726.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
gi|325083324|gb|EGC36780.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
Length = 383
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSRK E +LL L GVP + AP EAEAQCA + ++D D G+
Sbjct: 129 KRTISVSRKQNEECIKLLTLMGVPVVKAPCEAEAQCAEIVKSGKAWATGSEDMDSLTLGS 188
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ + F KK +L + P + LT E+ I L +L+G DY ++G+GP A
Sbjct: 189 TVLLRRLFFSEAKKMPILEFELPSVLEGLGLTYEEFIDLGILLGCDYCDSIKGIGPKRAF 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
E++ K +++ L K P + + FP V E +
Sbjct: 249 ELIQKH------------KTLEEIIKHLDKSKYP------------IPEFFPYQEVRELF 284
Query: 487 LKPDI--NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
PD+ + W PD++GL F + G+S RV Q +
Sbjct: 285 KHPDVIPGDQLPAFQWKDPDVEGLNEFLVKEMGFSDVRVAQGI 327
>gi|357507117|ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
gi|355498862|gb|AES80065.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 612
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 305 ELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDI 364
E G R SR + E EL +L G+P + A GEAEA CA L H IT DSD
Sbjct: 105 EEGVSAGRNSTFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDA 164
Query: 365 WLFGARTVYKNFF-DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGP 422
+LFGA+ + K+F + K Y DI L R+ LI ++LLVG+D+ G+QG+G
Sbjct: 165 FLFGAKCIIKSFSPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGI 224
Query: 423 VTALEILAKFSPSDSPNQ 440
+AL + F D N+
Sbjct: 225 DSALRFVQAFGEDDILNR 242
>gi|317374903|sp|D3TQJ5.1|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
Length = 382
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 26/220 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + ++
Sbjct: 140 EAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSGILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + F LT ++ I L +L+G DY G++G+GP A E++ + ++
Sbjct: 200 RKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIRGIGPKRATELMNSYKDIET- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E + R K + P+ + R + +N + + S +E L
Sbjct: 259 ----ILEKIDRKKYTV-----PEDWNYQIARELFVNPEVADPSSLE-------------L 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
W PD DGL RF ++++RV I+K S ++
Sbjct: 297 KWFDPDEDGLVRFFCGDRQFNEDRVRSGAKKILKCKSSQT 336
>gi|407916553|gb|EKG09919.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 392
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 29/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+P+I+AP EAEAQCA L ++D D F + + ++ F ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLTFNSPVLLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + E+ RE+ I L +L+G DY ++GVGP TAL+++
Sbjct: 200 RKEPIQEIHLDKVLEGLEMEREQFIDLCILLGCDYLDPIKGVGPSTALKLV--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
++ +E + +F +K P +D+P +L+PD++
Sbjct: 251 REHKNLEGVVKFMQGNSKYTIP--------------EDWPYQDARLLFLEPDVHPADHPE 296
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ W PD+DGL +F + G++++RV
Sbjct: 297 CEFKWDAPDVDGLIKFLVEEKGFNEDRV 324
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+P+I+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVL 166
>gi|451853401|gb|EMD66695.1| hypothetical protein COCSADRAFT_35197 [Cochliobolus sativus ND90Pr]
Length = 395
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q+LL+L G+P+IVAP EAEAQCA+L G ++D D F + + ++
Sbjct: 140 ECQQLLKLMGIPYIVAPTEAEAQCATLAKGGKVYAAASEDMDTLTFASPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + E+ +++ I L +L+G DY ++G+GP TAL+++ +
Sbjct: 200 RKEPILEIHLDKVLEGLEMDQKQFIDLCILLGCDYLDPIKGIGPSTALKLI-----REHK 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+ +VE ++ ++ + + + DD+P +L+PD+ +
Sbjct: 255 DLEGVVEHIK----------------SQSSKKLTIPDDWPFADARLLFLEPDVLPADAPE 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVEEKHFNEDRV 326
>gi|430812753|emb|CCJ29874.1| unnamed protein product [Pneumocystis jirovecii]
Length = 225
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 28/217 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P++ AP EAEAQCA+L ++D DI F + ++
Sbjct: 18 ECKKLLKLMGIPYVDAPCEAEAQCAALAKAGKVYAAASEDMDILCFSTPILLRHLTFSEQ 77
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + E+ + L +L+G DY ++G+GP ALE++ ++ D+
Sbjct: 78 KKEPITEVNLEKALKELNMPLEQFVDLCILLGCDYCEPIKGIGPKRALELIREYKSLDA- 136
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
F N+ A K+K + +++P E +LKPDI + +
Sbjct: 137 -----------FINF-ADKSK-----------YHIPENWPYKDARELFLKPDITDPETFE 173
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
L W +PD +GL F + G+S+ RV+ ++ + K +
Sbjct: 174 LKWESPDAEGLLDFLVKEKGFSEERVNNGIVRLEKTL 210
>gi|356559829|ref|XP_003548199.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 588
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EA+ L G+ + EAEAQCA L + G + DSDI+LFGARTVY++
Sbjct: 126 EAKVLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDG 185
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI R+ LI L+LL+GSDY G+ G+GP +A +I+ S
Sbjct: 186 GYVVCYEMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVK------SIGD 239
Query: 441 NYIVESMRRFKN----WLAKKNKPDTHLTRKLRNVKL------NDDFPN---VSVIEAYL 487
YI +++F + W+ K+ + L L + L ND P+ + VI AY+
Sbjct: 240 KYI---LKKFASEGLGWVKKRKGIPSILHSNLIILILILYSCKNDLRPDDNILQVINAYM 296
Query: 488 KP-----DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIP 529
KP D + + LA L++ F W + D ++P
Sbjct: 297 KPKCHQADSDIVHKALAQYPFQRTKLQQICVGFFEWPSEKTDGYILP 343
>gi|317376190|sp|D3BN56.1|FEN1_POLPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|281203217|gb|EFA77418.1| XPG [Polysphondylium pallidum PN500]
Length = 388
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 310 KKRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
+KR SRK E ++LL+L GVP + AP EAEAQCA L G ++D D G
Sbjct: 128 QKRTISASRKQNEECKKLLELMGVPIVQAPCEAEAQCAELCKGGKAWATGSEDMDSLTLG 187
Query: 369 ARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ + +K ++ + +LT ++ + L +L+G DY ++G+GP +
Sbjct: 188 TTILLRRLTFSEARKLPIMEIELEKVLDGLDLTHDQFVDLCILLGCDYCDTIKGIGPKKS 247
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
+++ K N +++++ R KN + + FP V E
Sbjct: 248 FDMITKHK-----NIQTVIQNIDRTKNPIP-------------------ESFPYEEVREL 283
Query: 486 YLKPDI--NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+ PD+ ++ ++ W PD+DGL ++ + G+++ RV Q +
Sbjct: 284 FKNPDVIKCQDLPEIVWKEPDVDGLIKYLVGEMGFNETRVQQGI 327
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 264 QTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
Q R S +Q + E ++LL+L GVP + AP EAEAQCA L G
Sbjct: 128 QKRTISASRKQ-NEECKKLLELMGVPIVQAPCEAEAQCAELCKG 170
>gi|88603762|ref|YP_503940.1| flap endonuclease-1 [Methanospirillum hungatei JF-1]
gi|121721338|sp|Q2FNC9.1|FEN_METHJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|88189224|gb|ABD42221.1| flap endonuclease 1 [Methanospirillum hungatei JF-1]
Length = 333
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 43/226 (19%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
A++L+QL G+P + AP E EAQ A + L V++ D D LFG + +N
Sbjct: 136 ARQLIQLMGLPVVDAPSEGEAQGAYMVLKGDADYVVSQDYDTLLFGTPVLVRNLTISGKR 195
Query: 383 VL----------RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
L R D+ ++TRE+LI++A+L G+D+ PG++G+G T L+ +
Sbjct: 196 RLHGRQITVQPERIVLSDVLSTLDITREQLIEIAILTGTDFNPGIRGIGAKTGLKKI--- 252
Query: 433 SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
K + D+ + KL DF V +L P +
Sbjct: 253 -----------------------KSGEFDSIIREKL------PDFDPEPVRSFFLNPPV- 282
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
T+ L G D DG+R F + G+SQ+RVD L I KK Q++
Sbjct: 283 TDSYTLDPGRIDRDGIRAFLCGEHGFSQDRVDPVLDKISKKEKQKT 328
>gi|115456427|ref|NP_001051814.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|62510683|sp|Q75LI2.1|FEN12_ORYSJ RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B; AltName:
Full=OsFEN-1b
gi|317374867|sp|B8AMS4.1|FEN12_ORYSI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|40714676|gb|AAR88582.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|108711942|gb|ABF99737.1| Flap endonuclease-1b, putative, expressed [Oryza sativa Japonica
Group]
gi|113550285|dbj|BAF13728.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|215692762|dbj|BAG88230.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194043|gb|EEC76470.1| hypothetical protein OsI_14202 [Oryza sativa Indica Group]
gi|222626117|gb|EEE60249.1| hypothetical protein OsJ_13256 [Oryza sativa Japonica Group]
Length = 412
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V++K E + LL L GVP + APGEAEAQCA+L + + ++D D FGA
Sbjct: 129 KRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGA 188
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R ++ D K+S V + + LT ++ I L +L G DY ++G+G AL
Sbjct: 189 RRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRAL 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + YI E ++ TR + +D+P V +
Sbjct: 249 KLIRQ--------HGYIEEVVQNLSQ------------TR----YSVPEDWPYQEVRALF 284
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P++ T++ W PD +GL F A + +S +RV +++
Sbjct: 285 KEPNVCTDIPDFLWTPPDEEGLINFLAAENNFSPDRVVKSV 325
>gi|29467052|dbj|BAC66965.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|37496995|dbj|BAC98428.1| flap endonuclease-1b [Oryza sativa Japonica Group]
Length = 412
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V++K E + LL L GVP + APGEAEAQCA+L + + ++D D FGA
Sbjct: 129 KRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGA 188
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R ++ D K+S V + + LT ++ I L +L G DY ++G+G AL
Sbjct: 189 RRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRAL 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + YI E ++ TR + +D+P V +
Sbjct: 249 KLIRQ--------HGYIEEVVQNLSQ------------TR----YSVPEDWPYQEVRALF 284
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P++ T++ W PD +GL F A + +S +RV +++
Sbjct: 285 KEPNVCTDIPDFLWTPPDEEGLINFLAAENNFSPDRVVKSV 325
>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
gi|317374896|sp|B4LM90.1|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
Length = 386
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + ELT ++ I L +L+G DY ++GVGP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIKGVGPKRAIELIKSYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N +NW K+ + E +++PD+ + +
Sbjct: 260 LENIDTSKYPVPENWNYKRAR------------------------ELFIEPDVADASAID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD DGL +F +++ RV
Sbjct: 296 LKWTEPDEDGLVQFLCGDRQFNEERV 321
>gi|71421804|ref|XP_811914.1| DNA repair protein RAD2 [Trypanosoma cruzi strain CL Brener]
gi|70876631|gb|EAN90063.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 107/193 (55%), Gaps = 11/193 (5%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
G+PF+++P EA+AQCA L V ++DSD+ + GA V + FF K +V+ Y D
Sbjct: 470 GIPFVLSPHEADAQCAFLSQQRLVDAVFSEDSDVIVHGADVVLRGFFSKNRYVVVYRQSD 529
Query: 391 IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS-PNQNYIVESMRR 449
+ + ++ L+ LALL+G DY G+ GV + AL I+ F +S +++++ + R
Sbjct: 530 LAMC-GVDKDVLVALALLLGCDYAEGVDGVSLLEALRIITAFWHQESVQGPSHVLDMLTR 588
Query: 450 FKNWLAKKNKP--------DTHLT-RKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
+++ +A++ ++L R+ +++ DFP V V++A+ ++ +++ A
Sbjct: 589 WRDAVAQRRFVWEEEGVLLQSYLNWRRWSTLRVAADFPQVPVVDAFFNATVDADMRPFAV 648
Query: 501 GTPDLDGLRRFAA 513
+P+ + LR FA
Sbjct: 649 ASPEWNRLRTFAG 661
>gi|156845450|ref|XP_001645616.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
gi|317376167|sp|A7TJ59.1|FEN1_VANPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156116281|gb|EDO17758.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 377
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P+I AP EAE+QCA L ++D D + + ++
Sbjct: 138 EAKQLLELMGIPYITAPCEAESQCAELAKCGKVYAAASEDMDTLCYRTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++ ++ +
Sbjct: 198 KKEPIHEIDTELVLKGLDLTLEQFVDLGIMLGCDYCDSIKGVGPVTALKLIKEYGSLEKI 257
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+ +ES W K+ +D+P E +LKPD IN N +
Sbjct: 258 IE--YIESDSSNSKW------------------KIPNDWPYKDARELFLKPDVINGNEVE 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P+ GL F + +S+ RV
Sbjct: 298 LKWQPPNEKGLIDFLCGEKKFSEERV 323
>gi|354546051|emb|CCE42780.1| hypothetical protein CPAR2_204230 [Candida parapsilosis]
Length = 383
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLELMGIPYVNAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPYLLRHLTFAEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + T + + +++ I L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 201 RKMPIDQITYSEAMEGLGMPKDQFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+VE ++ N PD K+ +++P E +L P++ + +
Sbjct: 260 ----LVEYLQ---------NNPDK------TKFKVPENWPYKEARELFLHPEVMEASKVE 300
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL + + G+S++R+
Sbjct: 301 LKWKEPDVDGLIEYMVKQKGFSEDRI 326
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 278 EAQELLQLFGVPFIVAPGEAEAQCASLELG 307
EA++LL+L G+P++ AP EAEAQCA L G
Sbjct: 141 EAKKLLELMGIPYVNAPCEAEAQCAELARG 170
>gi|449510827|ref|XP_004163772.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Cucumis
sativus]
Length = 382
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP I AP EAEAQCA+L V ++D D FG+ ++ D S
Sbjct: 141 DCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I LT ++ I L +L G DY ++G+G +TAL+++ + +S
Sbjct: 201 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIES- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + ++ DD+P + + +P + T+ ++L
Sbjct: 260 ----ILENINK-------------------ERYQIPDDWPYKEARQLFKEPLVCTDEEQL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W TPD +GL F N+ G++ RV + +
Sbjct: 297 DIKWTTPDEEGLLTFLVNENGFNSERVTKAV 327
>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
Length = 342
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 50/228 (21%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN------ 375
+A++LLQL G+P + AP E EAQ A + + + D D LFGA + +N
Sbjct: 134 DAKQLLQLMGIPIVQAPSEGEAQAAYMAMKGDVYASASQDYDSLLFGAPRLVRNLTITGK 193
Query: 376 --------FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTAL 426
+ + K ++ D+ ++TREKLI+LA+LVG+DY P G++G+GP AL
Sbjct: 194 RKMPGKDVYVEVKPELI--ILEDVLNQLKITREKLIELAILVGTDYNPGGIKGIGPKKAL 251
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
EI+ K+S K+ LAK K D + E +
Sbjct: 252 EIV-KYS-----------------KDPLAKFQK--------------QSDVDLYQIKEFF 279
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
L P + T+ L W PD +G+ RF ++ +S+ RV + + K I
Sbjct: 280 LNPPV-TDEYSLTWKEPDEEGIIRFLCDEHDFSEERVKNGIERLKKAI 326
>gi|449435964|ref|XP_004135764.1| PREDICTED: flap endonuclease 1-like [Cucumis sativus]
Length = 377
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP I AP EAEAQCA+L V ++D D FG+ ++ D S
Sbjct: 141 DCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I LT ++ I L +L G DY ++G+G +TAL+++ + +S
Sbjct: 201 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIES- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + ++ DD+P + + +P + T+ ++L
Sbjct: 260 ----ILENINK-------------------ERYQIPDDWPYKEARQLFKEPLVCTDEEQL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W TPD +GL F N+ G++ RV + +
Sbjct: 297 DIKWTTPDEEGLLTFLVNENGFNSERVTKAV 327
>gi|50556476|ref|XP_505646.1| YALI0F20042p [Yarrowia lipolytica]
gi|74632421|sp|Q6C116.1|FEN1_YARLI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49651516|emb|CAG78455.1| YALI0F20042p [Yarrowia lipolytica CLIB122]
Length = 389
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL L G+P + AP EAEAQCA L ++D D FG+ + ++
Sbjct: 152 EAKKLLTLMGIPIVEAPCEAEAQCAKLAEAGKVYAAASEDMDTLCFGSPVLLRHLTFSEA 211
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + I E+T + I L +L+G DY ++GVGP TAL+++ + +
Sbjct: 212 KKMPISEINFAKILEGLEMTHAQFIDLCILLGCDYADTIRGVGPQTALKLMKEHGSLEK- 270
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
IVE + KN K +K+ +++P V PD+ +++
Sbjct: 271 ----IVEHIE--KNPSGK--------------LKVPENWPYQEVRALLQAPDVLDSSSCD 310
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ W PD++GL F G+S++RV +MK++
Sbjct: 311 IKWNNPDVEGLVDFLVRDKGFSEDRVRAGAARLMKQV 347
>gi|395330939|gb|EJF63321.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 429
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 11/206 (5%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+PF+VAP EAEAQCA L G ++D D FGA + ++
Sbjct: 159 ECRKLLTLMGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILLRHLTFSEA 218
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K+ + + E+ + +L +L+G DY ++GVGP AL++L +
Sbjct: 219 RKTPISEISLEKALEGLEMDMSQFTELCILLGCDYLEPIKGVGPKGALKLLREHG----- 273
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN-TNVQK 497
+V +R + K++ + +K V++ D++P + + KPD+ + +
Sbjct: 274 TLGKVVAHLR--EKAAEKEDAGEDGGKKKKGGVQIPDEWPWEAAKALFSKPDVTPADELE 331
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W +PD++GL F + G+++ RV
Sbjct: 332 LEWKSPDIEGLVDFLVKEKGFNEERV 357
>gi|225681808|gb|EEH20092.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 566
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 26/232 (11%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++R + +++L++LF P+ +APGEAEA+CA L+ V++DD D +FG+R N
Sbjct: 101 LARIIRRSKDLIELFRFPYHIAPGEAEAECARLQTFGAVDAVMSDDVDTIMFGSRVTIMN 160
Query: 376 FFDKKS-------HVLRYTAPDIR----YYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
+ + S HV Y + L R +I ALL G DY P G+ GP
Sbjct: 161 YSKEDSSGTNAATHVTLYRTKESVDGQIANVPLDRGGMILFALLSGGDYLPAGVPKCGPK 220
Query: 424 TALEI-LAKFS----PSDSPNQNYIVESMRRFKNWLAKKNKPDT--HLTRKLRNVKLNDD 476
A EI LA F S +++ + +R+++ L + +T + K + V++ D
Sbjct: 221 LAGEIALAGFGNELLQSVEGSESELAVKLRQWRERLQSQLHENTEGYFKCKHKAVQIPDS 280
Query: 477 FPNVSVIEAYLKPDINTNVQ------KLAWGTP-DLDGLRRFAANKFGWSQN 521
FP++ ++ Y P +++ + W DL+GLR F FGW +
Sbjct: 281 FPDLKILRDYTHPVVSSPEKLREAQLSFIWDQAIDLEGLRDFVEKDFGWRRG 332
>gi|403162368|ref|XP_003322600.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172578|gb|EFP78181.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 387
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 27/220 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++VAP EAEAQCA L G G ++D D FG + ++
Sbjct: 141 ECRRLLTLMGIPWVVAPSEAEAQCAELCRGGLVYGAGSEDMDTLTFGTPILLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ELT E+ I+ +L G DY L+GV TA +++ + +
Sbjct: 201 RKMPILTVNLEKVLSGLELTMEQFIEFCVLCGCDYVDPLKGVAAKTAHKLMMEHGSLEK- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+VE +R + KN P +D+P + KP++ + + K
Sbjct: 260 ----VVEHLRE-----SSKNPPP-------------EDWPWEEARALFQKPEVTPSSELK 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L W PD++GL F + G+ + RV + + + ++Q+
Sbjct: 298 LEWKKPDVEGLVDFLVKEKGFDEERVKKGAAKLTQAMTQK 337
>gi|328852744|gb|EGG01887.1| hypothetical protein MELLADRAFT_110505 [Melampsora larici-populina
98AG31]
Length = 385
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
E + LL L G+P+++AP EAEAQCA L G G ++D D FG + ++ F +
Sbjct: 141 ECRRLLTLMGIPWVIAPSEAEAQCAELCKGGLVYGAGSEDMDTLTFGTPLLLRHLTFSEA 200
Query: 381 SHVLRYTA--PDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V T + +LT E+ I +L G DY L+GV TAL+++ + ++
Sbjct: 201 RKVPINTVNLSKVLAGLDLTMERFIDFCILCGCDYVDPLKGVAAKTALKLIKEHGSLEA- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+V+ +++ KN P +D+P E ++KPD I + K
Sbjct: 260 ----VVDHLQQ-----TGKNPPP-------------EDWPWAEAKELFVKPDVIKSEDIK 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G+ + RV
Sbjct: 298 LEWNMPDVDGLVEFLVKEKGFDEERV 323
>gi|429854713|gb|ELA29705.1| DNA-repair protein rad2 [Colletotrichum gloeosporioides Nara gc5]
Length = 394
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+PFIVAP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 ECQRLLKLMGIPFIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + RE+ + L +L+G DY + VGP TAL+++ + D
Sbjct: 200 RKEPIQEVHIDKVLEGLGMEREQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLDK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE++ K P ++ +D+P E + KPD+ L
Sbjct: 259 ----LVEAI---------KEDPKG-------KYQIPEDWPYQDARELFFKPDVRPADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD+DGL +F + G+S++RV
Sbjct: 299 CDFKWEKPDMDGLVQFLVTEKGFSEDRV 326
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+PFIVAP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAECQRLLKLMGIPFIVAPTEAEAQCAVL 166
>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
Length = 327
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 48/224 (21%)
Query: 311 KRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 370
K PY+ + +++LL + G+P+I A GE EAQ A L V + D D LFGA+
Sbjct: 126 KLSPYI---IESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAK 182
Query: 371 TVYKNFFDKKSHVLRYTAPDIRYY--------FELTREKLIQLALLVGSDYTPGLQGVGP 422
V +N + D+ YY ++ RE+LI + +L+G+D++ GL+GVG
Sbjct: 183 RVVRNL------AINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGA 236
Query: 423 VTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSV 482
TAL++ K +N LAK + +H ++R
Sbjct: 237 KTALKLAKK----------------GELENKLAKLQEESSHDISEVR------------- 267
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQT 526
E +L ++NT+ K+ W P + + F + G+SQ+RV +
Sbjct: 268 -EIFLNHNVNTDY-KIRWKKPAKNDIIDFLCEEHGFSQDRVSKA 309
>gi|330914981|ref|XP_003296859.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
gi|311330789|gb|EFQ95031.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
Length = 342
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+IVAP EAEAQCA+L G ++D D F + ++
Sbjct: 87 ECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASEDMDTLTFDTPILLRHLTFSEQ 146
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ I L +L+G DY ++G+GP TAL+++ + +
Sbjct: 147 RKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHN----- 201
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+ IVE + K+ +KK + + DD+P +L+PD+ +
Sbjct: 202 DLEGIVEHI---KSQTSKK-------------LTIPDDWPFADARLLFLEPDVRPADDPE 245
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 246 CDFKWEAPDVEGLVKFLVEEKHFNEDRV 273
>gi|71023659|ref|XP_762059.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
gi|74699231|sp|Q4P1V1.1|FEN1_USTMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46101624|gb|EAK86857.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
Length = 374
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 25/220 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E + LL+L G+P ++AP EAEAQCA L ++D D FG + K+ +
Sbjct: 141 EVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQ 200
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L D+ E +T + I L +L+G DY ++G+GP TAL+++ +
Sbjct: 201 KKLPVHQVDLAKALEGLQMTMAQFIDLCILLGCDYLDPIKGIGPKTALKLIREH------ 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+++ + L + K ++V++ D +P + + PD+ V
Sbjct: 255 ------KTLENVVHHLKEDGK---------KSVQIPDHWPFQEARKIFESPDVQKGVDLD 299
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L W PD++ + +F G+S++RV + + K +SQ+
Sbjct: 300 LKWEAPDVEAMVKFLCQDKGFSEDRVRKGCEKLQKSLSQK 339
>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
[Saccoglossus kowalevskii]
Length = 379
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 30/216 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL G+P++ APGEAEAQCA L T+D D FG+ TV ++
Sbjct: 140 ECKKLLTFMGIPYLDAPGEAEAQCAELVKAGKVYATATEDMDSLTFGSSTVVRHMTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K Y +I EL++++ I L +L+G DY ++G+GP A++++
Sbjct: 200 RKMPCQEYNLNNILAELELSQDEFIDLCILLGCDYCDSIRGIGPKRAIDLI--------- 250
Query: 439 NQNYIVESMRRFKNWLAKK-NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ- 496
Q+ +E + + +KK PD L ++ R E + KP++ V
Sbjct: 251 RQHKTIEEV--IAHLDSKKYTVPDGWLYKEAR--------------ELFKKPNVTAGVDI 294
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+L W PD DGL + + + G++++R+ ++K
Sbjct: 295 ELKWIDPDEDGLIDYMSKQKGFAEDRIKNGAKKLLK 330
>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
Length = 320
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L GVP AP EAEAQCA L T+D D FG++ + +
Sbjct: 76 EAKKLLRLMGVPVFDAPCEAEAQCAELVRAGKVFAAATEDMDALAFGSKRLLRQLTASEA 135
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V + FE+ + + L +L+G DYT ++G+GP A E++ K ++
Sbjct: 136 KKLPVKEINLEQVLKDFEMDMPQFVDLCILLGCDYTKTIRGIGPKKAFELIQKHKTIENV 195
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+N E +NW ++ R+L ++KP+I TN +
Sbjct: 196 LENIDTEKYPVPENWQFRE-------ARRL-----------------FMKPEI-TNCEDI 230
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L WG PD + + R+ + +++ RV +L+ + K
Sbjct: 231 NLQWGKPDTEEIVRYLCGEKNFNEERVRSSLVRMEK 266
>gi|294909525|ref|XP_002777787.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
gi|239885749|gb|EER09582.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
Length = 937
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 9/110 (8%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 383
Q LL FG+P++ AP EAEAQC +L GVI+DDSD ++GA V + + +V
Sbjct: 765 QLLLTAFGIPWVDAPCEAEAQCVALVRNGLADGVISDDSDTLMYGAEVVLRRLYFDAMYV 824
Query: 384 LRYTA---PD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
Y++ PD +R + + ++ LA+L+G DYTPG+ G+G V ALEI+
Sbjct: 825 EMYSSSRMPDRLRDH-----DAMVSLAMLLGCDYTPGVLGIGAVNALEII 869
>gi|256052789|ref|XP_002569934.1| xp-G/rad2 DNA repair endonuclease family member [Schistosoma
mansoni]
Length = 828
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 13/160 (8%)
Query: 305 ELGTDKKRRPYVSRKMLE--AQELLQL---FGVPFIVAPGEAEAQCASLELGNHTQGVIT 359
++ T K +P ++R +QE +QL FG+P++ +PGEAEA CA L IT
Sbjct: 92 KITTQKCTKPNLNRIRFSKVSQECIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACIT 151
Query: 360 DDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPG 416
+D D +L+GA TVY++F + S V + I LT+ L+ L +L+G DY G
Sbjct: 152 NDGDAFLYGAETVYRHFSMDSRDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASG 211
Query: 417 LQGVGPVTALEILAKF-SPSDSPNQNYIVESMRRFKNWLA 455
+ +GPV AL +++ SPS ++++++ +F +WL
Sbjct: 212 VSRLGPVGALRLISSLKSPSLHVDEHFLI----KFLSWLT 247
>gi|241958594|ref|XP_002422016.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
gi|317374881|sp|B9WLQ5.1|FEN1_CANDC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|223645361|emb|CAX40017.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
Length = 372
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 26/206 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P + AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLELMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + D ++T+E+ I L +L+G DY ++G+G TA +++ + D+
Sbjct: 201 RKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
IVE W+ K NK T T L +++P + ++ P++ N N
Sbjct: 260 ----IVE-------WI-KNNK--TKYT-------LPENWPYDEARQLFMNPEVTNANEIS 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G+S++R+
Sbjct: 299 LKWKEPDVDGLIEFMVRQKGFSEDRI 324
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LL+L G+P + AP EAEAQCA L G
Sbjct: 134 VTREQNEEAKKLLELMGIPCVDAPCEAEAQCAELARG 170
>gi|359487708|ref|XP_002278964.2| PREDICTED: flap endonuclease 1-like [Vitis vinifera]
Length = 384
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ ++LL+L GVP I AP EAEAQCA+L V ++D D FGA ++ D S
Sbjct: 141 DCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 201 RKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIEN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ R ++ DD+P + +P + ++ ++L
Sbjct: 260 ----ILENINR-------------------ERYQIPDDWPYQEARRLFKEPQVFSDDEQL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL F N+ G++ +RV + +
Sbjct: 297 DIKWSAPDEEGLITFLVNENGFNSDRVTKAI 327
>gi|344303968|gb|EGW34217.1| hypothetical protein SPAPADRAFT_148774 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 25/218 (11%)
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ EA++LL+L G+P + AP EAEAQCA L G ++D D +
Sbjct: 129 KRLVRVSRQQNDEARKLLELMGIPIVNAPCEAEAQCAELARGGKVFAAASEDMDTLCYEP 188
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ +K + + T + ++T+E+ I L +L+G DY ++GVGPVTA
Sbjct: 189 PYLLRHLTFAEARKMPIDQITYSEAIAGLDMTKEQFIDLCILLGCDYCETIKGVGPVTAF 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + D IVE + N +K K K+ +++P + +
Sbjct: 249 KLIKEHGSLDK-----IVE----YINSNPEKTK-----------FKVPENWPYDEARQLF 288
Query: 487 LKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRV 523
LKP++ + L W PD++GL ++ + G+S+ R+
Sbjct: 289 LKPEVTEASEVTLKWKEPDVEGLIQYMVKEKGFSEERI 326
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
++ Q + EA++LL+L G+P + AP EAEAQCA L G
Sbjct: 134 VSRQQNDEARKLLELMGIPIVNAPCEAEAQCAELARG 170
>gi|448526873|ref|XP_003869406.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis Co 90-125]
gi|380353759|emb|CCG23271.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis]
Length = 382
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 26/207 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLELMGIPYVNAPCEAEAQCAELARGGKVFAAASEDMDTLCYEPPYLLRHLTFAEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + T + + +E+ I L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 201 RKMPIDQITYSEAMEGLGMPKEQFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI--NTNVQ 496
+VE +++ PD K+ +++P E +L P++ T V+
Sbjct: 260 ----LVEYLQK---------NPDK------TKFKVPENWPYKEARELFLHPEVIEATEVE 300
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL + + G+S++R+
Sbjct: 301 -LKWKEPDVDGLIEYMVKQKGFSEDRI 326
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 278 EAQELLQLFGVPFIVAPGEAEAQCASLELG 307
EA++LL+L G+P++ AP EAEAQCA L G
Sbjct: 141 EAKKLLELMGIPYVNAPCEAEAQCAELARG 170
>gi|449549056|gb|EMD40022.1| hypothetical protein CERSUDRAFT_132799 [Ceriporiopsis subvermispora
B]
Length = 409
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 12/206 (5%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+PF+VAP EAEAQCA L G ++D D F + + ++
Sbjct: 141 ECRRLLGLMGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFASPILLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K+ + E+ + I L +L+G DY ++GVGP +AL+++ +
Sbjct: 201 RKTPISEINLQKALDGLEMNMSQFIDLCILLGCDYLEPIKGVGPKSALKLI-----KEHG 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+ ++E +R +A K + +K +++ D++P + + KPD+ Q +
Sbjct: 256 SLGNVIEHLR---EKVAAKEEAAEDGKKKKGGIQIPDEWPWEEAKKFFEKPDVMPADQVE 312
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD++GL F + G+++ RV
Sbjct: 313 LEWKNPDVEGLVEFLVKEKGFNEERV 338
>gi|393234466|gb|EJD42028.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 548
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 110/235 (46%), Gaps = 45/235 (19%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS-- 381
QE+++ FG I APGEAEA+ A L +++DD D +LFGA V +N S
Sbjct: 115 QEIIEAFGYECIHAPGEAEAELAHLNRIGIIDAILSDDVDTFLFGASLVIRNPSATLSAN 174
Query: 382 ---------------HVLRYTAPDIRYY--FELTREKLIQLALLVGSDYTPGLQGVGPVT 424
HV Y A D+R + LT+ LI +ALL G DY PG++G+G
Sbjct: 175 RGNPIKNSEGRADGNHVKCYRADDLRTHEDIALTQGGLILIALLSGGDYHPGVRGIGMGI 234
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKN---------W---LAKKNKPDTH--LTRKLRN 470
A LA+ D +VE+MR K W +A + + D+ + RK R
Sbjct: 235 A-RGLAQCGFGDQ-----LVEAMRTLKGHALETFLQQWRANVAHELRTDSRGLVGRKYRQ 288
Query: 471 VK--LNDDFPNVSVIEAYLKPDIN---TNVQKLAWGT-PDLDGLRRFAANKFGWS 519
+ + DFP++SV++AY+ P ++ + L W PDL L + F W
Sbjct: 289 LANTFSRDFPDLSVVDAYVNPVVSQARGTLHDLKWRREPDLLLLAKLCERHFEWG 343
>gi|403414469|emb|CCM01169.1| predicted protein [Fibroporia radiculosa]
Length = 400
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 12/206 (5%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E + LL L G+PF+VAP EAEAQCA L G ++D D F A +Y++ F +
Sbjct: 133 ECRRLLGLMGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFSAPVLYRHLTFSEA 192
Query: 380 KSHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ + D E+ + I L +L+G DY ++G+GP +AL+++ +
Sbjct: 193 RKQPISEIHLDKALEGLEMNMSQFIDLCILLGCDYLEPIKGIGPKSALKLVREHG----- 247
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
N ++E + + LA K + +K + + +++P + + KPD+ Q
Sbjct: 248 NLGAVIEHL---QEKLAAKEEAKEDGKKKKGGISIPEEWPWEEAKKVFEKPDVTPADQID 304
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
+ W +PD DGL +F + G+++ RV
Sbjct: 305 IEWKSPDADGLVQFLVTEKGFNEERV 330
>gi|154151645|ref|YP_001405263.1| flap endonuclease-1 [Methanoregula boonei 6A8]
gi|166973700|sp|A7IA59.1|FEN_METB6 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154000197|gb|ABS56620.1| XPG I [Methanoregula boonei 6A8]
Length = 333
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 43/226 (19%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
++ELL L G+P++ AP E EAQ A + + ++ D D LFGA + +N
Sbjct: 136 SKELLDLLGIPYVQAPSEGEAQAAFMVQRGDARFAVSQDYDTLLFGAPLLMRNLTVSGKR 195
Query: 383 VLRYTA----------PDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
+R A ++ LTRE+L+++ +LVG+D+ PG GVG TAL+I+
Sbjct: 196 KIRGRAVTVNPERLVLSEVLSGLSLTREQLVEVGILVGTDFNPGAAGVGAKTALKIVKSG 255
Query: 433 SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
F LA+K F V + +LKP +
Sbjct: 256 G----------------FAQKLAEKCP----------------GFDPAPVADFFLKPPVT 283
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
T + LAWG P ++G+++ + + ++ RVD L K Q++
Sbjct: 284 TEYE-LAWGHPCVEGIKKMLCDGYDFAPERVDAALERYSAKAGQKT 328
>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [Methanocella arvoryzae MRE50]
gi|121690538|sp|Q0W6I0.1|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [Methanocella arvoryzae MRE50]
Length = 340
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 49/239 (20%)
Query: 316 VSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
++R++++ A+ LL G+PFIVAP E EAQ A + V + D D LFGA V +
Sbjct: 126 INRQIVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLLFGAPRVVR 185
Query: 375 N--------------FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGV 420
N + D K V+ ++ LTRE+LI +A+LVG+DY PG+ V
Sbjct: 186 NIAITGKRKVPRKNIYMDVKPEVIELQ--EVLATLGLTREELIDMAILVGTDYNPGIFKV 243
Query: 421 GPVTALEILAKFSPSDSPNQNYIVESM-RRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPN 479
GP TAL+++ K N I++ + + +NW A K
Sbjct: 244 GPKTALKLVKK----HGDNMPAILDELGQTIENWEAIK---------------------- 277
Query: 480 VSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
E +L P + + Q + WG P+ ++ F + +S +RVD+ L + +S+ +
Sbjct: 278 ----EFFLHPTVTDDYQ-VKWGKPEPAKIKEFLCEEHSFSVDRVDKVLERLTTAVSETT 331
>gi|346430351|emb|CCC55608.1| flap endonuclease-1 [uncultured archaeon]
Length = 343
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 62/267 (23%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EA AQ + R ++ M+E ++ LL L GVP++ AP E EAQ A + T
Sbjct: 110 EARAQGNEELMRKFATRAAFLKNYMVEDSKTLLDLMGVPWVEAPSEGEAQAAYMAARGVT 169
Query: 355 QGVITDDSDIWLFGARTVYKNF-------------FDKKSHVLRYTAPDIRYYFELTREK 401
G ++ D D LFG+ + +N + + S + T +++Y E+TRE+
Sbjct: 170 WGSVSQDYDSLLFGSPRLVRNLTVSGRRKLPNKDVYVEISPEMIETEKLLKFY-EITREQ 228
Query: 402 LIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPD 461
L+ + +LVG+D+ G++G+GP TAL+++ K+
Sbjct: 229 LVDIGILVGTDFNIGIKGIGPKTALKLIKKYG---------------------------- 260
Query: 462 THLTRKLRNVKLNDDFPNVS----------VIEAYLKPDINTNVQKLAWGTPDLDGLRRF 511
K+ N+K + PN+S V + +L+P + +VQ L W PD +G+ +F
Sbjct: 261 -----KIENIK---EVPNLSEFLPQEVLSEVRKIFLEPQVK-DVQGLEWRQPDEEGVIKF 311
Query: 512 AANKFGWSQNRVDQTLIPIMKKISQRS 538
++ +S +RV L I K+ + S
Sbjct: 312 LCDERNFSVDRVKNALTRIRKRPAASS 338
>gi|189191944|ref|XP_001932311.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973917|gb|EDU41416.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 395
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+IVAP EAEAQCA+L G ++D D F + ++
Sbjct: 140 ECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASEDMDTLTFDTPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ I L +L+G DY ++G+GP TAL+++ + + +
Sbjct: 200 RKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEG- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE ++ ++ + + + DD+P +L+PD+ +
Sbjct: 259 ----VVEHIK----------------SQSSKKLTIPDDWPFADARLLFLEPDVRPADDPE 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVEEKHFNEDRV 326
>gi|367047833|ref|XP_003654296.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
gi|347001559|gb|AEO67960.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
Length = 359
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+IVAP EAEAQCA L ++D D F + ++
Sbjct: 104 ECQRLLRLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDTPILLRHLTFSEQ 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ + L +L+G DY + VGP TAL+++ + +
Sbjct: 164 RKEPIQEIHLAKVLEGLNMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEK- 222
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE MR N P T + DD+P E + PD+ L
Sbjct: 223 ----VVEFMR---------NDPKGRYT-------IPDDWPFQDARELFFSPDVRQPDDPL 262
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F ++ G+S++RV
Sbjct: 263 CDFKWDKPDIEGLVQFLVHEKGFSEDRV 290
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T++ + E Q LL+L G+P+IVAP EAEAQCA L
Sbjct: 89 KFSRRTVRVTKEHNAECQRLLRLMGIPYIVAPTEAEAQCAVL 130
>gi|317376212|sp|B2VTT3.2|FEN1_PYRTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+IVAP EAEAQCA+L G ++D D F + ++
Sbjct: 140 ECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASEDMDTLTFDTPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ I L +L+G DY ++G+GP TAL+++ + + +
Sbjct: 200 RKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEG- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE ++ ++ + + + DD+P +L+PD+ +
Sbjct: 259 ----VVEHIK----------------SQSSKKLTIPDDWPFADARLLFLEPDVRPADDPE 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVEEKHFNEDRV 326
>gi|340052549|emb|CCC46830.1| putative flap endonuclease-1 (FEN-1), fragment [Trypanosoma vivax
Y486]
Length = 393
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 28/224 (12%)
Query: 319 KMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF- 377
+M EA++LLQL G+P + AP EAEAQCA L N V T+D D FGA + ++
Sbjct: 141 QMEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALTFGAPIMLRHLTY 200
Query: 378 --DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPS 435
KK + + DI +T E+ + L +L+G DY P + G+GP A E + KF
Sbjct: 201 SEAKKRPIAEFHLDDILQTSGMTMEQFVDLCILLGCDYVPKIPGIGPHKAWEGIKKFHSI 260
Query: 436 DSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNV 495
++ +ES+ K+ + +DF + ++ P++
Sbjct: 261 EA-----FIESLDSAKHVVP-------------------EDFHYSEARQFFIAPEVIPGE 296
Query: 496 Q-KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ ++ + PD +GL +F N+ ++++RV++ + + I +++
Sbjct: 297 EVEIQFREPDEEGLIQFLVNEKRFNRDRVEKGIQRLRNAIGKKT 340
>gi|169599851|ref|XP_001793348.1| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
gi|160705335|gb|EAT89482.2| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
Length = 377
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+PFI+AP EAEAQCA+L G ++D D F + ++
Sbjct: 121 ECRRLLKLMGIPFIIAPTEAEAQCATLARGGKVYAAASEDMDTLTFNTPILLRHLTFSEQ 180
Query: 379 KKSHVLRYTAPDIRYYFELTREK--LIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+K +L + E+ RE+ I L +L+G DY ++G+GP TAL+++ D
Sbjct: 181 RKEPILEIHLDKVLEGLEMEREQPQFIDLCILLGCDYLDPIKGIGPSTALKLI-----RD 235
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NT 493
+V H+ + + L +D+P + +L+PD+ +
Sbjct: 236 HKTLEGVV-----------------AHIQSDQKKLTLPEDWPFADARQLFLEPDVCPADA 278
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 279 PECDFKWEAPDIEGLVKFLVEEKHFNEDRV 308
>gi|443720454|gb|ELU10206.1| hypothetical protein CAPTEDRAFT_21886 [Capitella teleta]
Length = 377
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+PF+ AP EAEAQCASL G H T+D D FG+ + ++
Sbjct: 140 ECKQLLGLMGIPFVEAPCEAEAQCASLVKGGHVYATGTEDMDALTFGSTVLLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + ++ + EL+ E+ I L +L+G DY ++G+GP A++++
Sbjct: 200 RKMPIKEFSLEKVLAGLELSYEEFIDLCILLGCDYCDSIRGIGPKRAVDLI--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
Q+ +E++ KN KK + +D+P E + +PD+ + + +
Sbjct: 251 KQHRSIEAV--LKNIDTKK-------------YTIPEDWPFEQARELFKQPDVLKDSEVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P + L +F + G++++R+
Sbjct: 296 LKWTEPKEEELIKFMVEEKGFNEDRI 321
>gi|389852752|ref|YP_006354986.1| flap endonuclease-1 [Pyrococcus sp. ST04]
gi|388250058|gb|AFK22911.1| flap endonuclease-1 [Pyrococcus sp. ST04]
Length = 341
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 99/223 (44%), Gaps = 54/223 (24%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LL+L G+P I AP E EAQ A + + D D LFGA + +N
Sbjct: 134 DAKKLLELMGIPVIQAPSEGEAQAAYMASKGKVYASASQDYDSLLFGAPRLVRNLTITGK 193
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTP-GLQGVGPVT 424
L P Y E LTREKLI+LA+LVG+DY P G++G+GP
Sbjct: 194 RKL----PGKNIYVEIKPELIVLDEVLSSLKLTREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
ALEI +R K+ LAK + D ++ E
Sbjct: 250 ALEI------------------VRHSKDPLAKFQR--------------QSDVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L P + T+ KL W PD +G+ RF ++ +S+ RV L
Sbjct: 278 FFLNPPV-TDDYKLQWREPDEEGILRFLCDEHDFSEERVKNGL 319
>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ ++LL+L GVP I AP EAEAQCA+L V ++D D FGA ++ D S
Sbjct: 141 DCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 201 RKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIEN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ R ++ DD+P + +P + ++ ++L
Sbjct: 260 ----ILENINR-------------------ERYQIPDDWPYQEARRLFKEPQVFSDDEQL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL F N+ G++ +RV + +
Sbjct: 297 DIKWSAPDEEGLITFLVNENGFNSDRVTKAI 327
>gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member
[Schistosoma mansoni]
Length = 293
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 13/160 (8%)
Query: 305 ELGTDKKRRPYVSRKMLE--AQELLQL---FGVPFIVAPGEAEAQCASLELGNHTQGVIT 359
++ T K +P ++R +QE +QL FG+P++ +PGEAEA CA L IT
Sbjct: 92 KITTQKCTKPNLNRIRFSKVSQECIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACIT 151
Query: 360 DDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPG 416
+D D +L+GA TVY++F + S V + I LT+ L+ L +L+G DY G
Sbjct: 152 NDGDAFLYGAETVYRHFSMDSRDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASG 211
Query: 417 LQGVGPVTALEILAKF-SPSDSPNQNYIVESMRRFKNWLA 455
+ +GPV AL +++ SPS ++++++ +F +WL
Sbjct: 212 VSRLGPVGALRLISSLKSPSLHVDEHFLI----KFLSWLT 247
>gi|356927843|gb|AET42633.1| flap endonuclease-1 [Emiliania huxleyi virus 202]
Length = 358
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 23/227 (10%)
Query: 303 SLELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
S E+ +KR +R+ E ++LL G+P + AP EAEA CA+ T+D
Sbjct: 118 SYEIEKQEKRSVRATREQSEEVKKLLTFMGIPVVQAPCEAEATCAAYVKAGKAYATATED 177
Query: 362 SDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQ 418
D FG+ V ++ KK + Y+ P+I +T ++ I++ +L G DYT ++
Sbjct: 178 MDSLTFGSTHVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIK 237
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFP 478
G+GP A +++ + S ++ + L KK+ + +T + + +P
Sbjct: 238 GIGPTRAYQLIQEHS------------TIENVLDVLKKKHGEEQFVTM------VPEYYP 279
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQ 525
+V E + PD++ Q+L W PD + L F ++ +S +RV++
Sbjct: 280 IEAVRELFNNPDVDIT-QELTWKPPDREALISFLVDEKKFSSDRVNK 325
>gi|402080846|gb|EJT75991.1| DNA-repair protein rad2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 394
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 29/220 (13%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R +V+R+ E + LL+L G+P+IVAP EAEAQCA+L ++D D F +
Sbjct: 128 RRTVHVTREHNEECRRLLKLMGIPYIVAPTEAEAQCAALARAGKVFAAASEDMDTLCFDS 187
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ +K +L + + R++ + L +L+G DY + VGP TAL
Sbjct: 188 PVLLRHLTFSEQRKEPILEIHVDKVLEGLNMERKQFVDLCILLGCDYLDPIPKVGPTTAL 247
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + ++ IVE M+ K D T + DD+P + +
Sbjct: 248 KLIREHGSLET-----IVEKMK----------KGDLKYT-------VPDDWPFEDARDLF 285
Query: 487 LKPDINTNVQ---KLAWGTPDLDGLRRFAANKFGWSQNRV 523
PD+ W PD+DGL F + G+S++RV
Sbjct: 286 FNPDVRPADHPDCDFKWEKPDIDGLINFLVTEKGFSEDRV 325
>gi|340367941|ref|XP_003382511.1| PREDICTED: flap endonuclease 1-like [Amphimedon queenslandica]
Length = 373
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL L G+P++ AP EAEAQCA+L T+D D FG+ + +N ++
Sbjct: 140 EAKKLLSLMGIPYVEAPCEAEAQCAALTKAGKVYATATEDMDALTFGSSILVRNLTASEA 199
Query: 382 HVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L ++ ++ + + I L +L+G DY ++G+GPV A+++L
Sbjct: 200 RKLPVREINLSKALTELDMDQSQFIDLCILLGCDYCDSIKGIGPVNAMKLL--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN-TNVQK 497
Q+ +E + K KK ++ +++P +++PD++ + +
Sbjct: 251 RQHGNIEKI--LKGLSGKK-------------YQIPENWPFEEARRLFVEPDVSPADDIE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L WG PD +G+ +F + G+S++R+ + ++K
Sbjct: 296 LKWGNPDEEGIVKFLVEEKGFSEDRIRNGVKKLLK 330
>gi|317374948|sp|Q0UZR3.3|FEN1_PHANO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 396
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+PFI+AP EAEAQCA+L G ++D D F + ++
Sbjct: 140 ECRRLLKLMGIPFIIAPTEAEAQCATLARGGKVYAAASEDMDTLTFNTPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREK--LIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+K +L + E+ RE+ I L +L+G DY ++G+GP TAL+++ D
Sbjct: 200 RKEPILEIHLDKVLEGLEMEREQPQFIDLCILLGCDYLDPIKGIGPSTALKLI-----RD 254
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NT 493
+V H+ + + L +D+P + +L+PD+ +
Sbjct: 255 HKTLEGVV-----------------AHIQSDQKKLTLPEDWPFADARQLFLEPDVCPADA 297
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 298 PECDFKWEAPDIEGLVKFLVEEKHFNEDRV 327
>gi|258563548|ref|XP_002582519.1| predicted protein [Uncinocarpus reesii 1704]
gi|237908026|gb|EEP82427.1| predicted protein [Uncinocarpus reesii 1704]
Length = 772
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 31/242 (12%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS-- 381
+ L++LFG F APGEAEAQCA L++ +++D D +FG++ NF
Sbjct: 105 KRLIELFGFNFYDAPGEAEAQCAKLQIAGIVDASLSNDIDTLMFGSQVTLLNFSKASPKN 164
Query: 382 -------HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKF 432
+V R+++P+ F+ ++ ALL G DY P G+ GP A EI+ A F
Sbjct: 165 SGPATHVNVYRHSSPNANVTFDTA--GMVLFALLSGGDYLPAGVPRCGPKLAAEIVRAGF 222
Query: 433 SP-------SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
S+ + + + R ++ N+ + K + VK+ DFP++ V+
Sbjct: 223 GADLLDIIKSNPKDLDAPLNEWRERLDYELSTNE-SGYFKSKHKAVKIPKDFPDLRVLLD 281
Query: 486 YLKPDINT-----NVQKLAWGTP-DLDGLRRFAANKFGW----SQNRVDQTLIPIMKKIS 535
Y+ P +T ++ L W D+ L++F +K GW Q R +T+ P + S
Sbjct: 282 YISPVTSTEKEVEKLESLQWNQKIDVSSLKQFVCDKLGWDGLAGQYRFIRTIAPSLLCCS 341
Query: 536 QR 537
R
Sbjct: 342 LR 343
>gi|187608436|ref|NP_001120251.1| Gen endonuclease homolog 1 [Xenopus (Silurana) tropicalis]
gi|169641850|gb|AAI60467.1| LOC100145302 protein [Xenopus (Silurana) tropicalis]
Length = 219
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
K R Y + E +L+ G+P++ A GEAEA CA L + G IT+D D++L+GA
Sbjct: 104 KAGRSYFKSVLKECLLMLECLGIPWVQAAGEAEAMCAYLNAHGYVDGCITNDGDVFLYGA 163
Query: 370 RTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
+T Y+NF K HV Y I+ L RE+L+ LA+L+G DY P
Sbjct: 164 QTFYRNFTMNVKDPHVDCYEVSKIKAQLGLDREELVGLAILLGCDYLP 211
>gi|68477053|ref|XP_717504.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
gi|68477234|ref|XP_717410.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|74586103|sp|Q5A6K8.1|FEN1_CANAL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46439119|gb|EAK98441.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|46439217|gb|EAK98538.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
Length = 372
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 26/206 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LLQL G+P + AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + D ++T+E+ I L +L+G DY ++G+G TA +++ + D+
Sbjct: 201 RKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
IVE W+ K NK T T L +++P + ++ P++ N +
Sbjct: 260 ----IVE-------WI-KNNK--TKYT-------LPENWPYDEARQLFMNPEVTNASEIN 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G+S++R+
Sbjct: 299 LKWKEPDVDGLIEFMVKQKGFSEDRI 324
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LLQL G+P + AP EAEAQCA L G
Sbjct: 134 VTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARG 170
>gi|146423306|ref|XP_001487583.1| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL+L G+P++ AP EAEAQCA L + ++D D + + ++ ++
Sbjct: 105 EAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEA 164
Query: 382 HVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ D + E+ ++ I L +L+G DY ++GVGPVTA +++ +
Sbjct: 165 RKMPIDQIDYKKAMEGLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHG----- 219
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
S+ W+ + PD+ K+ +++P E +L PD++ +
Sbjct: 220 -------SLDNIVKWI--EENPDS------TKFKVPENWPYAEARELFLNPDVSPGKEIN 264
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P +D L F + G+S++RV
Sbjct: 265 LKWQEPKVDELVEFMVKQKGFSEDRV 290
>gi|190345050|gb|EDK36862.2| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL+L G+P++ AP EAEAQCA L + ++D D + + ++ ++
Sbjct: 105 EAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEA 164
Query: 382 HVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ D + E+ ++ I L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 165 RKMPIDQIDYKKAMEGLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDN- 223
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
IV+ W+ + PD+ K+ +++P E +L PD++ +
Sbjct: 224 ----IVK-------WI--EENPDS------TKFKVPENWPYAEARELFLNPDVSPGKEIN 264
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P +D L F + G+S++RV
Sbjct: 265 LKWQEPKVDELVEFMVKQKGFSEDRV 290
>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
gi|317374879|sp|A8XL25.1|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 382
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P + AP EAEAQCA+L G T+D D FG+ + ++
Sbjct: 140 EVKQLLGLMGIPVVEAPCEAEAQCANLVKAGKVYGTATEDMDALTFGSCVLLRHLLAPEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + +LT+++ I L +L+G DY ++G+GP A+E++
Sbjct: 200 KKIPIKEFHLARVLEEMQLTKDQFIDLCILLGCDYCGTIRGIGPKKAVELI--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
Q+ +E++ +N K P D+P E + +P++ + +
Sbjct: 251 KQHKNIETV--LENIDQTKYPPPA-------------DWPYKRARELFHEPEVMKCDEVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD++G+ +F + +S++R+ ++ + K
Sbjct: 296 LTWKDPDVEGIVKFMCGEKNFSEDRIRSAMVRMQK 330
>gi|317376215|sp|A5DCF5.3|FEN1_PICGU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 374
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL+L G+P++ AP EAEAQCA L + ++D D + + ++ ++
Sbjct: 141 EAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEA 200
Query: 382 HVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ D + E+ ++ I L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 201 RKMPIDQIDYKKAMEGLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
IV+ W+ + PD+ K+ +++P E +L PD++ +
Sbjct: 260 ----IVK-------WI--EENPDS------TKFKVPENWPYAEARELFLNPDVSPGKEIN 300
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P +D L F + G+S++RV
Sbjct: 301 LKWQEPKVDELVEFMVKQKGFSEDRV 326
>gi|367008554|ref|XP_003678778.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
gi|359746435|emb|CCE89567.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
Length = 380
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L GVP++ AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAKQLLELMGVPYLTAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + LT E+ + L +++G DY ++GVGPVTAL+++ + +
Sbjct: 198 KKEPIHEIDTETVLNGLGLTIEQFVDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEKI 257
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+ VES W K+ +D+P E +L PD I+ N
Sbjct: 258 IE--FVESDESNSKW------------------KIPEDWPYKEARELFLNPDVIDGNEVN 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
L W P D L F N+ +S+ RV ++ + K +
Sbjct: 298 LKWSPPKEDELIDFLCNQKKFSEERVRSGIVRLKKGL 334
>gi|225453885|ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera]
gi|296089141|emb|CBI38844.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Query: 304 LELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
+E G +R SR++ E ELL+L G+P + A EAEA CA L H IT DSD
Sbjct: 104 VEEGVSVERNAEFSRRVQECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSD 163
Query: 364 IWLFGARTVYKNFF-DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVG 421
+LFGA+ V K + K + Y DI L R+ LI ++LLVG+DY G+QG+G
Sbjct: 164 AFLFGAKCVIKCLRPNCKEPLECYHMSDIESGLGLKRKHLIAISLLVGNDYDLNGVQGIG 223
Query: 422 PVTALEILAKFS 433
TA+ + FS
Sbjct: 224 LDTAVRFVQGFS 235
>gi|116203453|ref|XP_001227537.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88175738|gb|EAQ83206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 378
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+I+AP EAEAQCA L ++D D F + ++
Sbjct: 123 ECQRLLKLMGIPYILAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQ 182
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ + L +L+G DY + VGP TAL+++ + +
Sbjct: 183 RKEPIQEIHVEKVLEGLNMERKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEK- 241
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE M KN P + T + DD+P + + PD+ L
Sbjct: 242 ----VVEFM---------KNDPKSRYT-------VPDDWPFEDARDLFFSPDVRQADDPL 281
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + G+S++RV
Sbjct: 282 CDFKWDKPDMEGLVKFLVQEKGFSEDRV 309
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+P+I+AP EAEAQCA L
Sbjct: 108 KFSRRTVRVTREHNEECQRLLKLMGIPYILAPTEAEAQCAVL 149
>gi|357122637|ref|XP_003563021.1| PREDICTED: flap endonuclease 1-B-like [Brachypodium distachyon]
Length = 413
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 28/209 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ ++LL+L GVP + APGEAEAQCASL + V ++D D FG+ ++ D
Sbjct: 141 DCKKLLRLMGVPVVEAPGEAEAQCASLCKNHKAYAVASEDMDSLTFGSLRFLRHITDLSF 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
K+S V + P + LT ++ I L +L G DY ++G+G AL+++ +
Sbjct: 201 KRSPVTEFEVPKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQ------- 253
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I E ++ N + +D+P V + +P++ T +
Sbjct: 254 -HGCIEEVVQNLNNRFT-----------------VPEDWPYQEVRTLFKEPNVCTEIPDF 295
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W + D +G+ F A + +S +RV++ +
Sbjct: 296 QWTSVDKEGIVNFLAIENSFSSDRVEKAV 324
>gi|392566068|gb|EIW59244.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 406
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 12/206 (5%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+PF+VAP EAEAQCA L G ++D D FGA +Y++
Sbjct: 141 ECRRLLGLMGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILYRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K+ + E+ + +L +L+G DY ++GVGP +AL+++ +
Sbjct: 201 RKTPISEINLQKALEGLEMNMSQFTELCILLGCDYLEPIKGVGPKSALKLIRE------- 253
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN-TNVQK 497
+ + + K A+K + +K V++ +++P +LKPD+ + +
Sbjct: 254 -HGSLGKILEHLKEKAAEKEEAAEEGKKKKGGVQIPEEWPWEQAKAIFLKPDVTPADELE 312
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W +P++DGL F + G+++ RV
Sbjct: 313 LEWKSPNVDGLVDFLVREKGFNEERV 338
>gi|409042314|gb|EKM51798.1| hypothetical protein PHACADRAFT_102664 [Phanerochaete carnosa
HHB-10118-sp]
Length = 384
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 26/220 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L GVP++VAP EAEAQCA L G ++D D F + + ++
Sbjct: 141 ECRRLLTLMGVPWVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNSAILLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K+ + + E++ + I L +L+G DY ++GVGP +AL+++ ++
Sbjct: 201 RKAPISEINLEKVLEGLEMSMSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYG----- 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+VE HL K + + D++P + + KPD+ + +
Sbjct: 256 GLAEVVE-----------------HLREKCGGISVPDEWPWEEAKKLFEKPDVTPASEVE 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ W PD++GL F + G++++RV + + K ++ +
Sbjct: 299 IEWKGPDVEGLVDFLVKEKGFNEDRVRKGAEKLTKGVAAK 338
>gi|317374880|sp|C4YLS2.1|FEN1_CANAW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238879915|gb|EEQ43553.1| structure-specific endonuclease RAD27 [Candida albicans WO-1]
Length = 372
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 26/206 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LLQL G+P + AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + D ++T+E+ I L +L+G DY ++G+G TA +++ + D+
Sbjct: 201 RKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
IVE W+ K NK T T L +++P + ++ P++ N +
Sbjct: 260 ----IVE-------WI-KNNK--TKYT-------LPENWPFDEARQLFMNPEVTNASEIS 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G+S++R+
Sbjct: 299 LKWKEPDVDGLIEFMVKQKGFSEDRI 324
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LLQL G+P + AP EAEAQCA L G
Sbjct: 134 VTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARG 170
>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
gi|74802123|sp|Q7Q323.2|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
Length = 383
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + ++
Sbjct: 140 EAKELLRLMGVPYVEAPCEAEAQCAALVRAGKVYATATEDMDALTFGSNILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS- 437
+K V + + FELT+++ I L +L+G DY ++G+GP A+E++ K +
Sbjct: 200 RKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDYCDTIRGIGPKKAIELINKHRSIEKI 259
Query: 438 ----PNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-N 492
Q YIV + W + RKL + +P++ +
Sbjct: 260 LEHLDRQKYIVP-----EGW-------NYEQARKL-----------------FKEPEVQD 290
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ +L W PD +GL +F ++++R+ I+K
Sbjct: 291 ADTIELKWSEPDEEGLVKFLCGDRQFNEDRIRSGAKKILK 330
>gi|167536429|ref|XP_001749886.1| hypothetical protein [Monosiga brevicollis MX1]
gi|317374912|sp|A9VB27.1|FEN1_MONBE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|163771601|gb|EDQ85265.1| predicted protein [Monosiga brevicollis MX1]
Length = 368
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 31/227 (13%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R +V+R+ E ++LL L G+PFI+AP EAEAQCA L G T+D D FG
Sbjct: 128 RRLVHVTREHNEQCRQLLTLMGIPFIIAPTEAEAQCAELVKGGKVFATATEDMDALTFGT 187
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ S + + R E++ E+ I + +L+G DY ++G+G A
Sbjct: 188 TVLLRHM--TFSEARKMPIQEFRLQKGGLEMSMEEFIDMCILLGCDYCDSIKGIGRQKAY 245
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ ++ +E++ + HL K + +D+ E +
Sbjct: 246 QLI---------KEHKNIETVLK-------------HLDPK--KYVIPEDWHFAEARELF 281
Query: 487 LKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L+PD+ + + W TPD+DGL +F + G++++R+ ++ ++K
Sbjct: 282 LRPDVTPAAECEFKWTTPDIDGLVKFMCQENGFAEDRIRKSAEKLVK 328
>gi|307212664|gb|EFN88367.1| Flap endonuclease GEN [Harpegnathos saltator]
Length = 741
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 313 RPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
R +R + E +++L+ G+ I + GEAEA CA L G I+ DSD +L+GAR V
Sbjct: 106 RSQFNRILTECKQMLEYMGITCIQSHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGARIV 165
Query: 373 YKNFFD--------KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVT 424
Y+NF + V Y I + R K+I LALL G DY G+ GVG
Sbjct: 166 YRNFCTSIQGNCGARGGSVDIYCMDKIEKILNIGRNKMIALALLCGCDYDEGVTGVGKEA 225
Query: 425 ALEIL 429
AL+
Sbjct: 226 ALKFF 230
>gi|302764352|ref|XP_002965597.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
gi|300166411|gb|EFJ33017.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
Length = 552
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 302 ASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
A L G + + R ++ + E ELL L VP + A EAEA CA LE +T D
Sbjct: 102 AQLNGGDNHRNRAFLE-NVEECVELLGLLNVPVLRATSEAEALCAELERNGVVDACVTPD 160
Query: 362 SDIWLFGARTVYKNFFD--KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQ 418
SD +L GAR V + KK V Y A DIR +L RE LI LALLVG DY G+
Sbjct: 161 SDAFLHGARCVIQTLQADIKKPLVESYLASDIRLALQLEREHLIALALLVGCDYNLRGIP 220
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRF 450
GVG A+ ++ FS ++ I++++R++
Sbjct: 221 GVGYSNAMRLVQHFS------KDEILDNLRKW 246
>gi|443894995|dbj|GAC72341.1| hypothetical protein PANT_7d00055 [Pseudozyma antarctica T-34]
Length = 373
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 25/220 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P ++AP EAEAQCA L ++D D FG + K+
Sbjct: 141 EVRQLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQ 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V + P ++ + I L +L+G DY ++G+GP TAL+++ + ++
Sbjct: 201 KKLPVHQVDLPKALEGLQMDMPQFIDLCILLGCDYLDPIKGIGPKTALKLIREHKSLEN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+VE ++ AKK +V++ + +P + + PD+
Sbjct: 260 ----VVEHLKE----EAKK------------SVQIPEHWPFQEARKIFEAPDVQKGKDLD 299
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L W PD++G+ +F G+S++RV + + K +SQ+
Sbjct: 300 LKWEAPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLSQK 339
>gi|398396234|ref|XP_003851575.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
gi|339471455|gb|EGP86551.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
Length = 393
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 29/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK--NFFDK 379
EAQ LL+L G+P+I+AP EAEAQCA L G ++D D F + + + F ++
Sbjct: 140 EAQRLLKLMGIPYIIAPTEAEAQCAVLARGGKVFAAASEDMDTLTFASPVLVRKLTFAEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + E+ + + I +L+G DY ++G+GP +AL ++ +
Sbjct: 200 RKEPVQEIHLDRVLEGLEMDQTQFIDFCILLGCDYLDPVKGIGPKSALALIKEHKTL--- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+N +V ++ K K L +D+P + +L+PD+ +
Sbjct: 257 -ENVVV--------YIEKSGK-----------YTLPEDWPYQDARQLFLEPDVRQADEPE 296
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ W PD+DGL +F + G+S++RV
Sbjct: 297 CEFKWEAPDVDGLVKFLVEEKGFSEDRV 324
>gi|45358876|ref|NP_988433.1| flap endonuclease-1 [Methanococcus maripaludis S2]
gi|45047742|emb|CAF30869.1| flap endonuclease [Methanococcus maripaludis S2]
Length = 324
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EA+ Q E+ KR ++ +K ++ +++LL+L G+P++ AP E EAQCA L N+
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDKKTVDNSKKLLELMGIPYVNAPSEGEAQCAELVKANNA 166
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
VI+ D D L+GA V KN + ++R++LI A+L+G+DY
Sbjct: 167 FCVISQDYDSILYGAENVVKNITSSNKDIELIELEKTLSGLNISRDQLIDAAILIGTDYN 226
Query: 415 P-GLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
P GL+G GP A++ + K +NYI E
Sbjct: 227 PGGLKGFGPKKAIDTVKK-----GKMENYISE 253
>gi|356575281|ref|XP_003555770.1| PREDICTED: flap endonuclease 1-like [Glycine max]
Length = 382
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + AP EAEAQCA+L V ++D D FG+ ++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGSPKFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + I +T ++ I L +L G DY ++G+G +TAL+++ +
Sbjct: 201 KKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHG----- 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+N L NK ++ D++P + +P + T+ ++L
Sbjct: 256 ----------SIENILENLNK---------ERYQIPDNWPYQEARRLFKEPMVITDEKEL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W +PD +GL F N+ G++ +RV + +
Sbjct: 297 DIKWSSPDEEGLITFLVNENGFNSDRVTKAI 327
>gi|170111659|ref|XP_001887033.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374862|sp|B0DSN9.1|FEN11_LACBS RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|164638076|gb|EDR02356.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 394
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P ++AP EAEAQCA L G ++D D F A ++++
Sbjct: 141 ECRRLLRLMGIPVVIAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + ++ + I L +L+G DY ++GVGP +AL+++ ++
Sbjct: 201 KKQPISEINLKEALEGLDMNMSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYG----- 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+V+ +R R +++ D++P + + KPD+ + +
Sbjct: 256 GLKGVVKHLRE---------------NSGCRGMQIPDEWPWEEAKKIFEKPDVLPADEVE 300
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL +F + G++++RV
Sbjct: 301 LEWTNPDVDGLVQFLVKEKGFNEDRV 326
>gi|444731649|gb|ELW71998.1| Flap endonuclease GEN like protein 1 [Tupaia chinensis]
Length = 793
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K+ R + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 102 SQKRGRSQFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNACGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSCIKDKLGLDRDALVGLAILLGCDYLP 211
>gi|340518918|gb|EGR49158.1| Rad27p/FEN-1 endonuclease-like protein [Trichoderma reesei QM6a]
Length = 395
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+P+I+AP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + RE+ + L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPIQEIRLDKVLEGLNMEREQFVDLCILLGCDYLDPIPKVGPTTALKLIREHGTLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE++ + P T L +D+P E + PD+ L
Sbjct: 259 ----VVEAIEK---------DPKKKYT-------LPEDWPYKDARELFFHPDVRPADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD+DGL +F + G+S++RV
Sbjct: 299 CDFKWDKPDIDGLVQFLVTEKGFSEDRV 326
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+P+I+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVL 166
>gi|388498254|gb|AFK37193.1| unknown [Lotus japonicus]
Length = 366
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 29/209 (13%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD---KK 380
++LL+L GVP + AP EAEAQCA+L V ++D D FGA ++ D KK
Sbjct: 127 KKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKK 186
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
V+ + I LT ++ I L +L G DY ++G+G TAL+++ Q
Sbjct: 187 VPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLI---------RQ 237
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK--L 498
+ +E N L NK ++ +D+P + +P + T + L
Sbjct: 238 HGSIE------NILENINK---------ERYQIPEDWPYQEARRLFKEPMVTTGDDELNL 282
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL F N+ G++ +RV + +
Sbjct: 283 KWSAPDEEGLITFLVNENGFNSDRVTKAI 311
>gi|255721403|ref|XP_002545636.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
gi|317374882|sp|C5M2X8.1|FEN1_CANTT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|240136125|gb|EER35678.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
Length = 374
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ EA++LL+L G+P + AP EAEAQCA L G ++D D +
Sbjct: 129 KRLVRVSREQNEEAKKLLELMGIPIVEAPCEAEAQCAELARGGKVYAAASEDMDTLCYEP 188
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ +K + + + ++ +E+ + L +L+G DY ++GVGPVTA
Sbjct: 189 PQLLRHLTFAEARKIPIDEISYKEAMAGLDMNKEQFVDLCILLGCDYCETIRGVGPVTAY 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + S+ + W+ K N T + +++P E +
Sbjct: 249 KLIKEHG------------SLEKIVEWIEKGNTKYT----------VPENWPYAEARELF 286
Query: 487 LKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRV 523
L P++ L W PD++GL + G+S++R+
Sbjct: 287 LNPEVKKASDISLKWKEPDVEGLIEYMVKGKGFSEDRI 324
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
++ + + EA++LL+L G+P + AP EAEAQCA L G
Sbjct: 134 VSREQNEEAKKLLELMGIPIVEAPCEAEAQCAELARG 170
>gi|73852488|ref|YP_293772.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|72415204|emb|CAI65441.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|347481843|gb|AEO97829.1| flap endonuclease-1 [Emiliania huxleyi virus 84]
gi|347600467|gb|AEP14954.1| endonuclease [Emiliania huxleyi virus 88]
Length = 358
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E +++L L G+P + AP EAEA CA+ T+D D FG+ V ++
Sbjct: 138 EVKKMLTLMGIPVVQAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQ 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + Y+ P+I +T ++ I++ +L G DYT ++G+GP A +++ + S
Sbjct: 198 KKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHS----- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + L KK+ + T + DD+P +V + + PD++ Q+L
Sbjct: 253 -------TIENVLDVLKKKHGEEQFSTM------VPDDYPIEAVRDLFNNPDVDI-TQEL 298
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQ 525
W T + D L F + +S +RV++
Sbjct: 299 TWNTINRDALIAFLVEEKKFSADRVNK 325
>gi|449520116|ref|XP_004167080.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Cucumis
sativus]
Length = 299
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EAQ L G+P + A EAEAQCA L G T DSD +LFGARTVY++
Sbjct: 124 EAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDICLGDS 183
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
HV+ Y DI R +I ALL+GSDY+ G+ G+G +A + L K + Q
Sbjct: 184 GHVVCYEMDDIETRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQ-LVKAVGDGAVLQ 242
Query: 441 NYIVESMRRFKNWLAKK--NKPDTHLTRKLRNVKL--NDDFPNVSVIEAYLKPDINT 493
E + LAKK N L + + D+F VI+AYLKP ++
Sbjct: 243 KITSEGLA-----LAKKGENSKKQGLPKSGHGHYMLKCDEFSE--VIDAYLKPKCHS 292
>gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana]
gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 383
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP + A EAEAQCA+L GV ++D D FGA ++ D S
Sbjct: 141 DCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I +LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 201 RKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + ++ +++P + + +PD+ T+ ++L
Sbjct: 260 ----ILENLNK-------------------ERYQIPEEWPYNEARKLFKEPDVITDEEQL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W +PD +G+ +F N+ G++ +RV + +
Sbjct: 297 DIKWTSPDEEGIVQFLVNENGFNIDRVTKAI 327
>gi|183232094|ref|XP_651701.2| DNA-repair protein [Entamoeba histolytica HM-1:IMSS]
gi|169802201|gb|EAL46315.2| DNA-repair protein, putative [Entamoeba histolytica HM-1:IMSS]
Length = 660
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 8/110 (7%)
Query: 324 QELLQLF---GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+ L+Q+F +P+I+APGEAEAQC LE + T+DSDI+++GA+ V N F
Sbjct: 471 KRLIQMFKEINIPYIIAPGEAEAQCYQLEHDGLCDYIATNDSDIFVYGAKNVITNLF-TS 529
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILA 430
SH + Y+A F+ + +++ +LLV SDY+ G VGP+TA I+
Sbjct: 530 SHPILYSAST----FDYSLDQIRLYSLLVPSDYSNGFPNVGPITAKHIIT 575
>gi|254585117|ref|XP_002498126.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
gi|317376173|sp|C5DZA9.1|FEN1_ZYGRC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238941020|emb|CAR29193.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
Length = 379
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ LL+L G+P+IVAP EAEAQCA L ++D D + + ++
Sbjct: 138 EAKYLLKLMGIPYIVAPCEAEAQCAQLAKDGKVYAAASEDMDTLCYKTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + ELT+E+ + L +++G DY ++G+GPVTAL+++ + +
Sbjct: 198 KKEPIHEIDTELVLQGLELTQEQFVDLGIMLGCDYCESIRGIGPVTALKLIKEHGSLEKI 257
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+ +ES + W K+ +D+P + +L PD +N+
Sbjct: 258 VE--FIESGQANNKW------------------KVPEDWPYNEARQLFLNPDVVNSQDIN 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD + L F ++ +++ RV
Sbjct: 298 LKWNPPDEEKLIEFLCHEKKFNEERV 323
>gi|449706507|gb|EMD46341.1| DNArepair protein, putative, partial [Entamoeba histolytica KU27]
Length = 661
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 8/110 (7%)
Query: 324 QELLQLF---GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
+ L+Q+F +P+I+APGEAEAQC LE + T+DSDI+++GA+ V N F
Sbjct: 472 KRLIQMFKEINIPYIIAPGEAEAQCYQLEHDGLCDYIATNDSDIFVYGAKNVITNLF-TS 530
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILA 430
SH + Y+A F+ + +++ +LLV SDY+ G VGP+TA I+
Sbjct: 531 SHPILYSAST----FDYSLDQIRLYSLLVPSDYSNGFPNVGPITAKHIIT 576
>gi|452004834|gb|EMD97290.1| hypothetical protein COCHEDRAFT_1220743 [Cochliobolus
heterostrophus C5]
Length = 395
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+I+AP EAEAQCA+L G ++D D F + + ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAALAKGGKVYAAASEDMDTLTFASPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + +++ I L +L+G DY ++G+GP TAL+++ +
Sbjct: 200 RKEPILEIHLDKVLEGLAMDQKQFIDLCILLGCDYLDPIKGIGPSTALKLI-----REHK 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+ +VE ++ ++ + + + DD+P +L+PD+ +
Sbjct: 255 DLEGVVEHIK----------------SQSSKKLTIPDDWPFADARLLFLEPDVLPADAPE 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVEEKHFNEDRV 326
>gi|448102657|ref|XP_004199858.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359381280|emb|CCE81739.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 25/218 (11%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+R+ EA++LL+L G+P++ AP EAEAQCA L ++D D +
Sbjct: 93 KRTVRVTREQNQEAKKLLELMGIPYVDAPCEAEAQCAELARKGKVFAAASEDMDTICYEP 152
Query: 370 RTVYKNFFDKKSHVL---RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ ++ L + + E+ ++ I L +L+G DY ++GVGPVTA
Sbjct: 153 PFLLRHLTVAEARKLPIDQIEYSKVLESLEMDKDTFIDLCILLGCDYCETIKGVGPVTAF 212
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + D IVE +R PD K+ +++P E +
Sbjct: 213 KLIKEHGSLDK-----IVEFLR---------ANPDK------TKYKVPENWPYTEARELF 252
Query: 487 LKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
L P++ N + L W PD++GL + + G+S+ R+
Sbjct: 253 LHPEVQNADDINLKWKEPDVEGLIEYMVKQKGFSEERI 290
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
+T + ++EA++LL+L G+P++ AP EAEAQCA L
Sbjct: 98 VTREQNQEAKKLLELMGIPYVDAPCEAEAQCAEL 131
>gi|432927428|ref|XP_004081007.1| PREDICTED: flap endonuclease 1-like [Oryzias latipes]
Length = 380
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 38/220 (17%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E ++LL L GVP+I AP EAEA CA+L T+D D FG + ++ ++
Sbjct: 140 ECKKLLSLMGVPYIEAPCEAEASCAALVKEGKVFATATEDMDGLTFGTNVLLRHLTASEA 199
Query: 382 HVLRYTAPDIRYYF-------ELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
L P ++F +LT+E+ I L +L+G DY ++G+GP A++++
Sbjct: 200 KKL----PIQEFHFNRILQDMDLTKEQFIDLCILLGCDYCGTIKGIGPKRAVDLI----- 250
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNK-PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-IN 492
Q+ +E + +N +KK+ P+ L ++ R + +LKP+ ++
Sbjct: 251 ----RQHGCIEEI--LENIDSKKHSAPEDWLYKEARGL--------------FLKPEVVD 290
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ +L W PD +GL +F N+ +S++R+ I+K
Sbjct: 291 CSSVELKWNEPDEEGLVQFMCNEKQFSEDRIRNGCKKIVK 330
>gi|346976080|gb|EGY19532.1| DNA-repair protein rad2 [Verticillium dahliae VdLs.17]
Length = 394
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q+LL+L GVPFI+AP EAEAQCA L G ++D D F + ++
Sbjct: 140 ECQKLLKLMGVPFIIAPTEAEAQCAVLAKGGKVYAAASEDMDTLTFETPILLRHLTYSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R + + L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPIQEIHLDKVMEGLGMERNQFVDLCILLGCDYLDPVPKVGPSTALKLIREHKTLEG- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK- 497
+YI KN P + T L +D+P E +L PD+
Sbjct: 259 VVDYI-------------KNDPKSKYT-------LPEDWPFADARELFLNPDVRPADHAD 298
Query: 498 --LAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL F + G+S++RV
Sbjct: 299 CDFKWEKPDIEGLVTFLVTEKGFSEDRV 326
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
K +R +T + + E Q+LL+L GVPFI+AP EAEAQCA L G
Sbjct: 125 KFSRRTVRVTREHNAECQKLLKLMGVPFIIAPTEAEAQCAVLAKG 169
>gi|375083121|ref|ZP_09730153.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
gi|374742207|gb|EHR78613.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
Length = 340
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 50/228 (21%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN------ 375
+A++LL+L G+P++ AP E EAQ A + H + D D LFG + +N
Sbjct: 134 DAKKLLELMGIPWVQAPSEGEAQAAYMASKGHVWASASQDYDSLLFGTPRLVRNLTITGK 193
Query: 376 --------FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTAL 426
+ + K ++ ++ ++TREKL++LA+LVG+DY P G++G+GP AL
Sbjct: 194 RKLPGKDIYVEVKPELI--VLEEVLKELKITREKLVELAILVGTDYNPGGIKGIGPKKAL 251
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
EI+ K+S K+ LAK +K+ +V L ++ E +
Sbjct: 252 EIV-KYS-----------------KDPLAK--------YQKMSDVDL------YAIKEFF 279
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
L P T+ KL W PD +G+ +F ++ +S+ RV L + K +
Sbjct: 280 LNPP-TTDEYKLEWKMPDEEGILKFLCDEHDFSEERVKNGLERLKKAV 326
>gi|449685242|ref|XP_002159259.2| PREDICTED: flap endonuclease 1-like, partial [Hydra magnipapillata]
Length = 230
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 33/204 (16%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E +ELL L GVP+I AP EAEAQCA L G + ++D D FGA + ++
Sbjct: 44 ECKELLDLMGVPYIDAPCEAEAQCAELVKGGKVYAMGSEDMDSLTFGANILLRHLTFSEA 103
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + ELT+E+ + L +L+G DY ++GVGPVTA++++ + +
Sbjct: 104 RKMPIQEFHYSKVLEELELTKEQFVDLCILLGCDYCASIKGVGPVTAMKLIKEHRNIEGI 163
Query: 439 NQNYIVESMRRF---KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNV 495
++ ++S ++ +NW+ + D+ L +L+P++
Sbjct: 164 IKH--LQSKDKYTIPENWMYE----DSRLL--------------------FLEPEVTPAD 197
Query: 496 Q-KLAWGTPDLDGLRRFAANKFGW 518
Q +L W PD +GL + + G+
Sbjct: 198 QVQLKWKEPDEEGLVEYMVKQKGF 221
>gi|42570539|ref|NP_850877.2| flap endonuclease-1 [Arabidopsis thaliana]
gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 453
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP + A EAEAQCA+L GV ++D D FGA ++ D S
Sbjct: 141 DCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I +LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 201 RKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + ++ +++P + + +PD+ T+ ++L
Sbjct: 260 ----ILENLNK-------------------ERYQIPEEWPYNEARKLFKEPDVITDEEQL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W +PD +G+ +F N+ G++ +RV + +
Sbjct: 297 DIKWTSPDEEGIVQFLVNENGFNIDRVTKAI 327
>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 103/230 (44%), Gaps = 54/230 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LLQL G+P I AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNL----T 189
Query: 382 HVLRYTAPDIRYYFEL----------------TREKLIQLALLVGSDYTPG-LQGVGPVT 424
+ P Y E+ TREKLI+LA+LVG+DY PG ++G+GP
Sbjct: 190 ITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
ALEI+ R ++ LAK + D ++ E
Sbjct: 250 ALEIV------------------RYSRDPLAKFQR--------------QSDVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+L P + TN L+W PD +G+ +F ++ +S+ RV + + K I
Sbjct: 278 FFLNPPV-TNEYSLSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAI 326
>gi|453086627|gb|EMF14669.1| hypothetical protein SEPMUDRAFT_63272 [Mycosphaerella populorum
SO2202]
Length = 788
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK--- 379
A+ELL+ FG P+ VAPGEAEA+CA L+ V+++D D +FG+ +++N+ +
Sbjct: 107 AKELLRKFGFPWHVAPGEAEAECALLQREGVVDAVLSEDVDTLMFGSGVLWRNWTAEGKG 166
Query: 380 --KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALEIL-AKFSPS 435
+H Y A ++ L +E ++ +AL+ G DY G+ G GP + A F
Sbjct: 167 KVPTHCSVYNAKAVKEKSGLDKEGMVLVALMSGGDYIVEGIPGCGPKVGCDAARAGF--- 223
Query: 436 DSPNQNYIVESMRR----FKNWLAK-KNKPDTH----LTRKLRNVKLNDDFPNVSVIEAY 486
+ + +R K W K +++ +T+ +RK + + DDFP+ V+ Y
Sbjct: 224 ---GKELCALARKRDVSGLKIWREKLQHEINTNESKFFSRKSSKLVIPDDFPDREVLGYY 280
Query: 487 LKPDINTNVQKLA-------WGTPDLD----GLRRFAANKFGW 518
P ++T V+K+A W DLD LR FA + F W
Sbjct: 281 TDPCVST-VEKVARLKAEVKW---DLDMDFPALRAFAGDAFDW 319
>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
gi|28380013|sp|O50123.1|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
Length = 343
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 54/230 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LLQL G+P I AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNL----T 189
Query: 382 HVLRYTAPDIRYYFEL----------------TREKLIQLALLVGSDYTPG-LQGVGPVT 424
+ P Y E+ TREKLI+LA+LVG+DY PG ++G+GP
Sbjct: 190 ITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
ALEI+ Y + + +F+ D ++ E
Sbjct: 250 ALEIV-----------RYSRDPLAKFQR---------------------QSDVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+L P + TN L+W PD +G+ +F ++ +S+ RV + + K I
Sbjct: 278 FFLNPPV-TNEYSLSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAI 326
>gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP + A EAEAQCA+L GV ++D D FGA ++ D S
Sbjct: 141 DCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I +LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 201 RKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + ++ +++P + + +PD+ T+ ++L
Sbjct: 260 ----ILENLNK-------------------ERYQIPEEWPYNEARKLFKEPDVITDEEQL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W +PD +G+ +F N+ G++ +RV + +
Sbjct: 297 DIKWTSPDEEGIVQFLVNENGFNIDRVTKAI 327
>gi|195123149|ref|XP_002006071.1| GI18754 [Drosophila mojavensis]
gi|317374891|sp|B4KNM1.1|FEN1_DROMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193911139|gb|EDW10006.1| GI18754 [Drosophila mojavensis]
Length = 388
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + ELT ++ I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCDSIKGIGPKRAIELIKTYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N +NW ++ + E +++P++ + +
Sbjct: 260 LENIDTSKYIVPENWNYQRAR------------------------ELFVEPEVTDASTID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD DGL +F +++ RV
Sbjct: 296 LKWTAPDEDGLVQFLCGDRQFNEERV 321
>gi|198434339|ref|XP_002124511.1| PREDICTED: similar to Flap endonuclease GEN homolog 1 [Ciona
intestinalis]
Length = 579
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 313 RPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
R ++ + E +LL G+P+I + GEAEA CA+L G +T+DSD +L+GA++V
Sbjct: 107 RSRLNARFNECCQLLDQLGIPWIKSEGEAEATCAALNSVGVVDGCMTNDSDTFLYGAKSV 166
Query: 373 YKNF---FDKKS-HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALE 427
Y+N D+ V Y DI +L R+ LI L LL+G DY+P G+ GVG A+
Sbjct: 167 YRNLSMTTDRNDIDVECYELCDIESKLQLNRKSLIALGLLLGCDYSPQGVPGVGKKQAIM 226
Query: 428 ILAKFSPSD 436
+L+ + D
Sbjct: 227 LLSSWKNID 235
>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
gi|74854014|sp|Q54NU0.1|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
Length = 384
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 36/235 (15%)
Query: 305 ELGTDK------KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGV 357
E+GT++ KR V+RK E +LL L GVP + AP EAEAQCA +
Sbjct: 117 EVGTNEEVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWAT 176
Query: 358 ITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
++D D G+ + + F KK +L + + LT+++ I L++L+G DY
Sbjct: 177 GSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDYC 236
Query: 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLN 474
++G+GP A+E++ K +S+ L K P L
Sbjct: 237 DSIKGIGPKRAIELIQKH------------KSLEEVIKHLDKSKYP------------LP 272
Query: 475 DDFPNVSVIEAYLKPDI--NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+ FP V E + P++ + W PD++GL +F + G+S RV Q +
Sbjct: 273 EFFPYPEVRELFKNPNVIPADQLPPFQWKDPDVEGLNKFLVEEMGFSDVRVAQGI 327
>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
Length = 380
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 26/205 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E +ELL+L G+P+I AP EAEAQCA+L T+D D FG+ + ++
Sbjct: 140 ECKELLKLMGIPYIEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSNIILRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + E+T+ + I L +L+G DY ++G+GP A+E++ K +
Sbjct: 200 RKMPVQEIYLDKVLAELEMTQNEFIDLCILLGCDYCDSIKGIGPKRAIELIKKHKSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ K + P+ + ++ R + +N D + S +E L
Sbjct: 259 ----ILENLDSGKYVV-----PEDWIFQEARKLFINPDVCDASNVE-------------L 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRV 523
W PD +GL ++ +++ RV
Sbjct: 297 KWNEPDTEGLVKYLCGDKLFNEERV 321
>gi|195431204|ref|XP_002063637.1| GK21315 [Drosophila willistoni]
gi|317374897|sp|B4MR84.1|FEN1_DROWI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194159722|gb|EDW74623.1| GK21315 [Drosophila willistoni]
Length = 388
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSSKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V +T + EL + + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFTYEKLLQGLELNQREFIDLCILLGCDYCESIKGIGPKRAIELINSYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW K + E +++P++ + +
Sbjct: 260 LDNLDTSKYTVPENWNYKVAR------------------------ELFIEPEVADASAID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL +F + +S+ RV
Sbjct: 296 LKWTEPDEEGLVKFLCGERQFSEERV 321
>gi|321465723|gb|EFX76723.1| hypothetical protein DAPPUDRAFT_33887 [Daphnia pulex]
Length = 231
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 18/187 (9%)
Query: 247 SSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306
+S LE D + + GK L + + Q REA+ FG P +E+ +
Sbjct: 8 ASLLENGIDPIYILEGKAPELKAQVM-QKRREAR-----FGSN---QPATSES---ATSK 55
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
T + R Y+ + E ELL GV I + GEAEA CA L +G IT D D +L
Sbjct: 56 STGRSRYKYIQQ---ECTELLTALGVVTITSMGEAEAACAGLNHQGVVEGCITIDGDAFL 112
Query: 367 FGARTVYKNF-FDKKSHVLR-YTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
+GA+TVY+N D + V + Y+ I L+R+KLI +A+L G DY P G+ GVG
Sbjct: 113 YGAKTVYRNLSTDIHNFVCQEYSMDVIETRLNLSRDKLIAMAILFGCDYLPDGVPGVGKE 172
Query: 424 TALEILA 430
+AL +++
Sbjct: 173 SALRVIS 179
>gi|255543058|ref|XP_002512592.1| flap endonuclease-1, putative [Ricinus communis]
gi|223548553|gb|EEF50044.1| flap endonuclease-1, putative [Ricinus communis]
Length = 345
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP I AP EAEA+CA+L V ++D D FGA ++ D
Sbjct: 103 DCKRLLRLMGVPVIEAPSEAEAECAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSS 162
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V+ + I LT ++ I L +L G DY ++G+G +TAL+++ + ++
Sbjct: 163 RKVPVMEFETSKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGMTALKLIRQHGSIEN- 221
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
I+E+M + ++ +D+P + +P + + +
Sbjct: 222 ----ILENMNK-------------------ERYQIPEDWPYQEARRLFKEPLVLADEEEP 258
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L W PD +GL F N+ G++ +RV + +
Sbjct: 259 ELKWTAPDQEGLITFLVNENGFNNDRVTKAI 289
>gi|320590957|gb|EFX03398.1| DNA-repair protein rad2 [Grosmannia clavigera kw1407]
Length = 856
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+PFIVAP EAEAQCA L ++D D F + ++ F ++
Sbjct: 602 ECQRLLKLMGIPFIVAPTEAEAQCAELARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQ 661
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + RE+ + L +L+G DY + VGP TAL+++ + +
Sbjct: 662 RKEPIQEIHLDKLLLGLNMEREQFVDLCILLGCDYLDPIPKVGPNTALKLIREHGSLEK- 720
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+VE M+ T K + + DD+P E + KPD+ +
Sbjct: 721 ----VVEFMK----------------TDKKQKFVIPDDWPYEDARELFFKPDVRSASDPE 760
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD+ GL +F N+ G+S++RV
Sbjct: 761 CDFKWEKPDVPGLVQFLVNEKGFSEDRV 788
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+PFIVAP EAEAQCA L
Sbjct: 587 KFSRRTVRVTREHNTECQRLLKLMGIPFIVAPTEAEAQCAEL 628
>gi|346322835|gb|EGX92433.1| DNA-repair protein rad2 [Cordyceps militaris CM01]
Length = 394
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL L G+PFIVAP EAEAQCA L ++D D F + + ++ F ++
Sbjct: 140 ECQRLLALMGIPFIVAPTEAEAQCAVLAKAGKVFAAASEDMDTLCFDSPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + L +L+G DY + VGP TAL+++ ++ +
Sbjct: 200 RKEPIQEIHLDKVLEGLNMERKQFVDLCILLGCDYLDPIPKVGPTTALKLIREYGTLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE+M +N KK + +D+P + + PD+ L
Sbjct: 259 ----VVEAM---QNDSKKK-------------YIIPEDWPYEDARDLFFSPDVRPADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD+DGL +F + G+S++RV
Sbjct: 299 CDVKWDKPDMDGLVKFLVGEKGFSEDRV 326
>gi|358379429|gb|EHK17109.1| hypothetical protein TRIVIDRAFT_195114 [Trichoderma virens Gv29-8]
Length = 787
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 17/214 (7%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF----- 376
A+ L++LFG APGEAEA+CA L+ V+++D D +FG +N+
Sbjct: 102 HAKRLIRLFGFVVHDAPGEAEAECAFLQKNGIVDAVLSEDVDTIMFGCTRTLRNWSAEGK 161
Query: 377 FDKKSHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFS 433
K +HV Y D+ L RE ++ +AL+ G DY P G+ G GP A E A F
Sbjct: 162 AGKPTHVSMYDVEDLNMANLGLDREGMVLVALMSGGDYIPEGVPGCGPKVACEAAKAGFG 221
Query: 434 PSDSPNQNYIVESMRRFKNWLAK--KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
S + E +R++K L + + + + + + +DFP+V V+ Y P +
Sbjct: 222 KSLCQLRASDTEGLRQWKESLRHELQTNESKYFRTRHKALVIPEDFPSVEVLRYYTHPVV 281
Query: 492 NTNV------QKLAWGTP-DLDGLRRFAANKFGW 518
+ Q+L LDGLR F F W
Sbjct: 282 SPESTLEVVRQRLNETREIQLDGLREFTRETFNW 315
>gi|402073493|gb|EJT69071.1| hypothetical protein GGTG_13339 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 473
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 110/247 (44%), Gaps = 48/247 (19%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK-- 380
A+ L+ LFG APGEAEA+CA L+ V+++D D +FG +N+ +K
Sbjct: 75 AKRLIHLFGFYTHDAPGEAEAECALLQRCGIVNAVLSEDVDTIMFGCTCTLRNWSAEKEE 134
Query: 381 -------SHVLRYTAPDIRY--YFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI-- 428
+HV Y + I + E ++ +AL+ G DY P G+ G GP A +
Sbjct: 135 GSSSGPPTHVTVYNSAAIARPDAAGIDGEGMVLVALMSGGDYDPDGIPGCGPRVACQAAR 194
Query: 429 ------LAKFSPSDSPNQ-NYIVESMRR-----FKNWLAKKNKPDTHLTRKLRNV--KLN 474
L + SD P+ E +RR K + +K+NK N+ +
Sbjct: 195 AGFGKSLCRIKRSDPPSVLAAWREELRRELADNTKGFFSKRNK----------NIAAAIP 244
Query: 475 DDFPNVSVIEAYLKPDINTN----------VQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
D+FPN+ V+ Y P+++ + + A G DL GLR FAA+ F WS
Sbjct: 245 DNFPNMEVLGYYRYPNVSQDAVLESVRCSFLGTTAGGNMDLQGLRDFAAHTFDWSGKEGA 304
Query: 525 QTLIPIM 531
I ++
Sbjct: 305 TKFIQVL 311
>gi|412993680|emb|CCO14191.1| predicted protein [Bathycoccus prasinos]
Length = 390
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E L++L GVP AP EAEA CA++ G T+D D F + +N
Sbjct: 141 EVMRLVKLLGVPVFEAPCEAEATCAAMCKAGLVHGAATEDMDTLTFACPRLIRNLMAPAS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + Y + +L ++ I L +L G DYT ++G+GPVTAL+++ ++
Sbjct: 201 QKKDIAEYDFDKVLKGLDLDYDQFIDLCILCGCDYTDSIRGIGPVTALQLIREYK----- 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
N I+E+++ K + P+ + ++ R + + +P+ I+TN +
Sbjct: 256 NIETILENIKDKKYVV-----PENFMYKEARQL--------------FKEPEVIDTNNLE 296
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W P+ +G+ F + +++ RV L I K
Sbjct: 297 LKWSKPNEEGVIEFLVKEKSFNEERVRNALARIKK 331
>gi|156555588|ref|XP_001605190.1| PREDICTED: flap endonuclease GEN-like [Nasonia vitripennis]
Length = 736
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---- 377
E +E+L+ G+ + GEAEA CA L G I+ DSD L+GA+ VY+NF
Sbjct: 115 ECEEMLKYMGLTCVKGYGEAEAMCAYLNEDGLVDGCISQDSDCLLYGAKIVYRNFCTSTQ 174
Query: 378 ----DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ Y+ I+ F L R K+I LAL+ G DY GL GVG AL++
Sbjct: 175 GNRTTSSGSIDEYSMEKIQQVFNLGRNKMIALALMCGCDYDEGLSGVGKEAALKLF 230
>gi|347482295|gb|AEO98236.1| flap endonuclease-1 [Emiliania huxleyi virus 203]
gi|347601360|gb|AEP15846.1| flap structure-specific endonuclease 1 [Emiliania huxleyi virus
207]
gi|357972633|gb|AET97906.1| flap endonuclease-1 [Emiliania huxleyi virus 201]
Length = 358
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 22/207 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E +++L L G+P I AP EAEA CA+ T+D D FG+ V ++
Sbjct: 138 EVKKMLTLMGIPVIQAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQ 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + Y+ P+I +T ++ I++ +L G DYT ++G+GP A +++ + S
Sbjct: 198 KKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHS----- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ L KK+ + T + DD+P +V + + P+++ Q+L
Sbjct: 253 -------TIENVLGVLKKKHGEEQFSTM------VPDDYPIEAVRDLFNNPEVDI-TQEL 298
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQ 525
W T + D L F + +S +RV++
Sbjct: 299 TWNTINRDALIAFLVEEKKFSADRVNK 325
>gi|18977786|ref|NP_579143.1| flap endonuclease-1 [Pyrococcus furiosus DSM 3638]
gi|397651906|ref|YP_006492487.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
gi|28380014|sp|O93634.1|FEN_PYRFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|6980604|pdb|1B43|A Chain A, Fen-1 From P. Furiosus
gi|6980605|pdb|1B43|B Chain B, Fen-1 From P. Furiosus
gi|4102602|gb|AAD01514.1| endo/exonuclease [Pyrococcus furiosus DSM 3638]
gi|18893531|gb|AAL81538.1| flap structure-specific endonuclease [Pyrococcus furiosus DSM 3638]
gi|393189497|gb|AFN04195.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
Length = 340
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 111/256 (43%), Gaps = 61/256 (23%)
Query: 303 SLELGTDKKRRPYVSR-----KML--EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
+LE G ++ R Y R +ML +A++LL+L G+P + AP E EAQ A +
Sbjct: 108 ALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVY 167
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFE----------------LTR 399
+ D D LFGA + +N L P Y E LTR
Sbjct: 168 ASASQDYDSLLFGAPRLVRNLTITGKRKL----PGKNVYVEIKPELIILEEVLKELKLTR 223
Query: 400 EKLIQLALLVGSDYTP-GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKN 458
EKLI+LA+LVG+DY P G++G+G ALEI +R K+ LAK
Sbjct: 224 EKLIELAILVGTDYNPGGIKGIGLKKALEI------------------VRHSKDPLAKFQ 265
Query: 459 KPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW 518
K D ++ E +L P + N L W PD +G+ +F ++ +
Sbjct: 266 K--------------QSDVDLYAIKEFFLNPPVTDNYN-LVWRDPDEEGILKFLCDEHDF 310
Query: 519 SQNRVDQTLIPIMKKI 534
S+ RV L + K I
Sbjct: 311 SEERVKNGLERLKKAI 326
>gi|315230863|ref|YP_004071299.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
gi|315183891|gb|ADT84076.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
Length = 342
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 55/242 (22%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R V+ +++E A++LL+L G+P++ AP E EAQ A + + D D LFGA
Sbjct: 122 QRASRVNEQLIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGKVWASASQDYDSLLFGA 181
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDY 413
+ +N + R P Y E + REKLI+LA+LVG+DY
Sbjct: 182 PRLVRNL----TITGRRKLPGKDVYVEVKPELIVLEEVLKELKIDREKLIELAILVGTDY 237
Query: 414 TP-GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVK 472
P G++GVGP ALEI+ S P + Y +K+ +V
Sbjct: 238 NPGGIKGVGPKKALEIV---RYSKDPLKKY-----------------------QKMSDVD 271
Query: 473 LNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L ++ E +L P + T+ KL W PD +G+ +F ++ +S+ RV L + K
Sbjct: 272 L------YAIKEFFLNPPV-TDDYKLVWKMPDEEGILKFLCDEHDFSEERVKNGLERLKK 324
Query: 533 KI 534
I
Sbjct: 325 AI 326
>gi|302769318|ref|XP_002968078.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
gi|300163722|gb|EFJ30332.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
Length = 552
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 10/152 (6%)
Query: 302 ASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
A L G + + R ++ + E ELL L VP + A EAEA CA LE +T D
Sbjct: 102 AQLNGGDNHRNRAFL-ENVEECVELLGLLNVPVLRATSEAEALCAELERNGVVDACVTPD 160
Query: 362 SDIWLFGARTVYKNFFD--KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQ 418
SD +L GA V + KK V Y A DIR +L RE LI LALLVG DY G+
Sbjct: 161 SDAFLHGASCVIQTLQADIKKPLVESYLASDIRLALQLEREHLIALALLVGCDYNLRGIP 220
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRF 450
GVG A+ ++ FS ++ I++++R++
Sbjct: 221 GVGYSNAMRLVQHFS------KDEILDNLRKW 246
>gi|134045325|ref|YP_001096811.1| flap endonuclease-1 [Methanococcus maripaludis C5]
gi|132662950|gb|ABO34596.1| flap endonuclease 1 [Methanococcus maripaludis C5]
Length = 324
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EA+ Q E+ KR ++ +K ++ +++LL+L G+P+I AP E EAQCA L N
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDA 166
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
VI+ D D L+GA V KN + ++ ++LI +A+L+G+DY
Sbjct: 167 FCVISQDYDSILYGAENVVKNITSSNKDIELIELEKTLSELNVSLDQLIDVAILIGTDYN 226
Query: 415 P-GLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
P GL+G GP A++ + K +NYI E
Sbjct: 227 PGGLKGFGPKKAIDTVKK-----GKMENYISE 253
>gi|343427426|emb|CBQ70953.1| probable DNA repair endonuclease rad2 [Sporisorium reilianum SRZ2]
Length = 374
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 25/220 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P ++AP EAEAQCA L ++D D FG + K+
Sbjct: 141 EVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQ 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V + P +++ + I L +L+G DY ++G+GP TAL+++ + ++
Sbjct: 201 KKLPVHQVDLPKALEGLQMSMPQFIDLCILLGCDYLDPIKGIGPKTALKLIREHKTLEN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+VE ++ ++V++ + +P + + PD+
Sbjct: 260 ----VVEHLKEEGK----------------KSVQIPEHWPFQEARKIFENPDVQKGKDLD 299
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L W PD++ + +F G+S++RV + + K +SQ+
Sbjct: 300 LKWEAPDVEAMVKFLCQDKGFSEDRVRKGCDKLQKSLSQK 339
>gi|449299844|gb|EMC95857.1| hypothetical protein BAUCODRAFT_109503 [Baudoinia compniacensis
UAMH 10762]
Length = 393
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 29/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
EAQ LL+L GVPFI+AP EAEAQCA L ++D D F + + ++ F ++
Sbjct: 140 EAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKVYAAASEDMDTLTFNSPVLLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + E+ + I L +L+G DY ++G+GP AL ++ + +
Sbjct: 200 RKEPIQEIHLDAVLSGLEMDLPQFIDLCILLGCDYVDPVKGIGPKVALALIREHKTLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VES+ + + DD+P +L+PD+ +
Sbjct: 259 ----VVESVTKSGKY------------------TFPDDWPYQDARLLFLEPDVRPADAPE 296
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD+DGL +F + G++++RV
Sbjct: 297 CDFHWNGPDVDGLVKFLVEEKGFNEDRV 324
>gi|260941263|ref|XP_002614798.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
gi|238851984|gb|EEQ41448.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL+L G+P+IVAP EAEAQCA L ++D D + + + ++ ++
Sbjct: 105 EAKKLLELMGIPYIVAPSEAEAQCAELARAGKVFAAASEDMDTLCYEPKYLLRHLTVAEA 164
Query: 382 HVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ D ++ R + L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 165 RKMPIDQIDYEAMLKGLDMDRSTFVDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDN- 223
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
IV+ W+ ++N T K+ +++P + ++ P+I +
Sbjct: 224 ----IVK-------WI-QENPEKT-------KYKVPENWPYDEAKQLFMNPEITKGDEVD 264
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
+ W P++DGL F + G+S+ R+
Sbjct: 265 VKWNEPNVDGLVEFMVKQKGFSEERI 290
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 8/62 (12%)
Query: 243 DVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCA 302
D+ ++ T+E+ L++ K+T AS + + EA++LL+L G+P+IVAP EAEAQCA
Sbjct: 78 DLKETGTVEE-----LMKYEKRTVRAS---REQNDEAKKLLELMGIPYIVAPSEAEAQCA 129
Query: 303 SL 304
L
Sbjct: 130 EL 131
>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
gi|317374877|sp|C3ZBT0.1|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
Length = 380
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 104/210 (49%), Gaps = 36/210 (17%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E ++LL L G+P++ AP EAEAQCA L T+D D+ FG + ++ ++
Sbjct: 140 ECKKLLTLMGIPYVDAPCEAEAQCAELAKKGKVYAAGTEDMDVLTFGTNIMLRHLTFSEA 199
Query: 382 HVLRYTAPDIRYYF-------ELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
+ P YY+ +LT+++ I L +L+G DY ++G+GP A+E++ ++
Sbjct: 200 RKM----PIKEYYYDRLLAELDLTQDQFIDLCILLGCDYCDSIRGIGPKRAIELIRQYKS 255
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
I E ++ DT + + +D+P + + +P++
Sbjct: 256 --------IEEILKHI----------DT------KKFPVPEDWPYDQARKLFKEPEVTPA 291
Query: 495 VQ-KLAWGTPDLDGLRRFAANKFGWSQNRV 523
Q +L W PD +GL ++ +N+ G+S++R+
Sbjct: 292 DQVELKWVDPDEEGLVQYMSNEKGFSEDRI 321
>gi|148230426|ref|NP_001080960.1| flap endonuclease 1-A [Xenopus laevis]
gi|82071385|sp|P70040.1|FEN1A_XENLA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A;
Short=xFEN-1a
gi|1490870|gb|AAB06176.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|4106358|gb|AAD02814.1| flap endonuclease 1 [Xenopus laevis]
gi|213623454|gb|AAI69765.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|213625072|gb|AAI69761.1| 5' nuclease xFEN1a [Xenopus laevis]
Length = 382
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P++ AP EAEA CA+L T+D D FG + ++
Sbjct: 140 ECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + +T E+ + L +L+GSDY ++G+GP A++++ + D
Sbjct: 200 KKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
N ++ +NWL K+ K HL +L+P+ ++T++ +
Sbjct: 260 IDNIDLKKYPVPENWLHKEAK---HL---------------------FLEPEVVDTDITE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL F + +S++R+
Sbjct: 296 LKWIEPDEEGLVAFMCGEKQFSEDRI 321
>gi|345563417|gb|EGX46418.1| hypothetical protein AOL_s00109g176 [Arthrobotrys oligospora ATCC
24927]
Length = 610
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 15/211 (7%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
++ L+ FG P APGEAEA+CA L+ V+++D D +FG R +++ S
Sbjct: 106 SRRLITAFGFPIHNAPGEAEAECAYLQKQGIVDAVLSEDVDTLMFGCRQSWRSCEKGDSK 165
Query: 383 VLR----YTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALEILAKFSPSDS 437
L Y + IR LT ++ ALL G DY T G+ G+G A+ AK D
Sbjct: 166 TLEIMQVYQSRVIRDKTGLTPAGMVLTALLSGGDYNTAGVAGIGMKQAVAA-AKAGFGDE 224
Query: 438 PNQNYIVESM---RRFKNWLAK-----KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
Q +E+ + W K + P+ +RK K+ DFP+ ++ Y+ P
Sbjct: 225 LLQACKLEASDGGHALQLWRQKLETNLRTNPNKIFSRKQPKAKIPGDFPDPKIVNYYINP 284
Query: 490 DINTNVQKLAWG-TPDLDGLRRFAANKFGWS 519
I+ ++ W P+L+ LR KF W+
Sbjct: 285 VISKTPPQINWNICPNLEALREITKAKFEWT 315
>gi|2674207|gb|AAB88707.1| flap endonuclease 1 [Xenopus laevis]
gi|115528353|gb|AAI24978.1| Fen1-A protein [Xenopus laevis]
Length = 382
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P++ AP EAEA CA+L T+D D FG + ++
Sbjct: 140 ECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + +T E+ + L +L+GSDY ++G+GP A++++ + D
Sbjct: 200 KKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
N ++ +NWL K+ K HL +L+P+ ++T++ +
Sbjct: 260 IDNIDLKKYPVPENWLHKEAK---HL---------------------FLEPEVVDTDITE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL F + +S++R+
Sbjct: 296 LKWIEPDEEGLVAFMCGEKQFSEDRI 321
>gi|336365482|gb|EGN93832.1| hypothetical protein SERLA73DRAFT_188945 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378041|gb|EGO19200.1| hypothetical protein SERLADRAFT_479560 [Serpula lacrymans var.
lacrymans S7.9]
Length = 407
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P +VAP EAEAQCA L G ++D D F A + ++
Sbjct: 141 ECRRLLKLMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFSAPILLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K+ + E+ L +L+G DY ++GVGP +AL+++ D
Sbjct: 201 RKAPISEINLQRALEGLEMDMSLFTDLCILLGCDYLEPIKGVGPKSALKLV-----RDHG 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN-TNVQK 497
+VE +R A+K + +K + + +++P + ++KPD+ + +
Sbjct: 256 GLAGVVEHLR---GKAAEKAEAGEDGKKKKGGIHIPEEWPWEEAKKIFVKPDVTPADEVE 312
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL +F + G+++ RV
Sbjct: 313 LEWKNPDIDGLVQFLVTEKGFNEERV 338
>gi|405953608|gb|EKC21238.1| Flap endonuclease 1-A [Crassostrea gigas]
Length = 376
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 36/219 (16%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E +ELL+ G+PFI APGEAEAQCA+L T+D D FG + +N ++
Sbjct: 140 ECKELLKYMGIPFINAPGEAEAQCAALVKAGKVYATGTEDMDALTFGTTVLLRNLTVAEA 199
Query: 382 HVLRYTAPDIRYYFE-------LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
L P YY+ LT+++ I L +L+G DY ++G+GP A++++ +
Sbjct: 200 RKL----PIKEYYYNRVLEELGLTKDEFIDLCILLGCDYCDSIRGIGPKRAIDLIKQHKT 255
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NT 493
D ++ + ++W+ K+ R+L + +P++ +
Sbjct: 256 IDEILKHLDSKKYTVPEDWMYKE-------ARRL-----------------FQEPEVADP 291
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+L W PD +GL F + +S++R+ + + K
Sbjct: 292 EELELKWSEPDEEGLIDFMVTQKNFSEDRIRNGMKKLQK 330
>gi|326429821|gb|EGD75391.1| flap endonuclease-1 [Salpingoeca sp. ATCC 50818]
Length = 380
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 24/205 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
+ QELL L G+P+IVAP EAEAQCA L T+D D FG + ++
Sbjct: 140 QCQELLDLMGIPYIVAPCEAEAQCAELVKAGKVFATATEDMDALTFGTSVLLRHMTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + ++ + +L++++ I L +L+G DY + G+G V A ++ + ++
Sbjct: 200 RKMPIQQFELKKVLEGLDLSQDEFIDLCILLGCDYCDKIGGIGRVRAYSLIKEHHSIEA- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++++ K K PD + R + F N V A DI+ L
Sbjct: 259 ----ILEAIKKEKK---KYTVPDDWKFAEAREL-----FKNPEVAPA---KDID-----L 298
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRV 523
W PD+D L F NK G+ + R+
Sbjct: 299 KWNIPDVDKLVDFMCNKHGFEEGRI 323
>gi|343471550|emb|CCD16055.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 311 KRRPYVSR-KMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR +M E + LLQL G+P + AP EAEAQCA L + V T+D D FGA
Sbjct: 172 KRMVRVSREQMDEVKTLLQLMGIPVVQAPSEAEAQCAELVRKDKAWAVGTEDMDALAFGA 231
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R + ++ KK + Y DI +T E+ I L +L+G DY P + G+GP A
Sbjct: 232 RVMLRHLTYGEAKKRPIAEYHLEDILELAGMTMEQFIDLCILLGCDYVPKIPGIGPHKAW 291
Query: 427 EILAKFS 433
E + K+
Sbjct: 292 EGIKKYG 298
>gi|336122204|ref|YP_004576979.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
gi|334856725|gb|AEH07201.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
Length = 324
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 42/228 (18%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR Y+ K++E ++ LL L G+PFI AP E EAQC+ + V++ D D L+GA
Sbjct: 122 KRINYLEPKVVENSKRLLNLMGIPFINAPSEGEAQCSYMAKKGDVYAVVSQDYDALLYGA 181
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALEI 428
+N + ++ +T + LI +A+L+G+DY G++G+GP AL+I
Sbjct: 182 PRTVRNITASNKPLELIELDEVLGALNITLDNLIDMAILIGTDYNIGGVKGIGPKKALDI 241
Query: 429 LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLK 488
+ N + E ++ +N+ KN ++ K+ D++
Sbjct: 242 VK---------NNKMGEYIKNIENYEVIKN--------IFKHPKVTDEY----------- 273
Query: 489 PDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
L G P+++ LR+F ++ +S+NR+ +P +KK+ +
Sbjct: 274 --------SLKLGAPNIEELRKFLIDENNFSENRI----LPSLKKLEK 309
>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
Length = 333
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 26/203 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK- 380
E LL L GVP I APGEAEA CA L V ++D D FG + + K+
Sbjct: 95 ECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRD 154
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
S + Y+ P + +L E+ + L +L+G DY + G+GP AL+++ +
Sbjct: 155 SEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLI---------KE 205
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
++ +E + H+ RK + LN + + + + P I+ V LAW
Sbjct: 206 HHTIEGVME-------------HVNRKTHPIPLNWQYEDARKL-FFETPKIDDPV--LAW 249
Query: 501 GTPDLDGLRRFAANKFGWSQNRV 523
PD +GL +F + + RV
Sbjct: 250 SGPDEEGLVQFLCKEKPLKEERV 272
>gi|346327520|gb|EGX97116.1| flap structure-specific endonuclease [Cordyceps militaris CM01]
Length = 770
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK-- 379
+A+ L++LFG+P + APGEAEA+CA L+ V+++D D +FG +N+ +
Sbjct: 102 QAKRLIRLFGLPALDAPGEAEAECALLQRHGIVDAVLSEDVDTIMFGCTKTLRNWSSEGK 161
Query: 380 ----KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFS 433
+HV Y + + L R+ ++ +AL+ G DY P G+ G G A E A F
Sbjct: 162 TSTAPTHVSLYDTAAVANH-GLGRQGMVLVALMSGGDYLPDGIPGCGVKVACEAANAGFG 220
Query: 434 PS----DSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
S + + + I ++ L H K +++ + DDFPN+ V+ Y P
Sbjct: 221 TSLCSLKAADTDMISAWRAELRHELTTNES--GHFRTKHKSLHIPDDFPNMEVLRYYTHP 278
Query: 490 DINTNVQKLA-------WGTPDLDGLRRFAANKFGW 518
++ A DL+ LR FA F W
Sbjct: 279 VVSPQSHLEAIRQKVYQHKNVDLESLREFARETFDW 314
>gi|327351073|gb|EGE79930.1| XPG family protein [Ajellomyces dermatitidis ATCC 18188]
Length = 838
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 26/231 (11%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+ R + ++ L+ LF P APGEAEA+CA L+ V+++D D +FG++ N
Sbjct: 101 LGRVIRRSKYLIDLFRFPHHTAPGEAEAECARLQTSGVVDAVMSNDVDAIMFGSKVTIMN 160
Query: 376 FFDKKS-------HVLRY----TAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
F + S HV Y T + + L R +I ALL G DY P G+ GP
Sbjct: 161 FSKENSSGTNAATHVTLYRTEGTGDEEKPNVPLDRGGMILFALLSGGDYLPAGVPKCGPK 220
Query: 424 TALEIL-AKF------SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDD 476
A EI+ A F + SP++ + R + + + K + V++ D+
Sbjct: 221 LAGEIVQAGFGNELLQAIEGSPSEVAMKLGKWRERLQTELHENGEGYFRSKHKVVQIPDN 280
Query: 477 FPNVSVIEAYLKP------DINTNVQKLAWGTP-DLDGLRRFAANKFGWSQ 520
FP++ V+ Y P +N Q W D++GLR F FGW
Sbjct: 281 FPDLKVLRDYTHPVVSSAEKLNEVRQSFKWDQAIDIEGLRNFVWKDFGWQH 331
>gi|317374928|sp|C4YBJ8.2|FEN1_CLAL4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 376
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL+L G+P+IVAP EAEAQCA L ++D D + + + ++ ++
Sbjct: 141 EAKKLLELMGIPYIVAPSEAEAQCAELARAGKVFAAASEDMDTLCYEPKYLLRHLTVAEA 200
Query: 382 HVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ D ++ R + L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 201 RKMPIDQIDYEAMLKGLDMDRSTFVDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
IV+ W+ ++N T K+ +++P + ++ P+I +
Sbjct: 260 ----IVK-------WI-QENPEKT-------KYKVPENWPYDEAKQLFMNPEITKGDEVD 300
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
+ W P++DGL F + G+S+ R+
Sbjct: 301 VKWNEPNVDGLVEFMVKQKGFSEERI 326
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 8/62 (12%)
Query: 243 DVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCA 302
D+ ++ T+E+ L++ K+T AS + + EA++LL+L G+P+IVAP EAEAQCA
Sbjct: 114 DLKETGTVEE-----LMKYEKRTVRAS---REQNDEAKKLLELMGIPYIVAPSEAEAQCA 165
Query: 303 SL 304
L
Sbjct: 166 EL 167
>gi|159905743|ref|YP_001549405.1| flap endonuclease-1 [Methanococcus maripaludis C6]
gi|159887236|gb|ABX02173.1| XPG I domain protein [Methanococcus maripaludis C6]
Length = 324
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EA+ Q E+ KR ++ +K+++ +++LL+L G+P+I AP E EAQCA L N
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDKKIIDNSKKLLELMGIPYIDAPSEGEAQCAELVKANDA 166
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
VI+ D D L+GA V KN + ++ ++LI +A+L+G+DY
Sbjct: 167 FCVISQDYDSILYGAENVVKNITSSNKDIELIELEKTLSELNVSLDQLIDVAILIGTDYN 226
Query: 415 P-GLQGVGPVTALEILAK 431
P GL+G GP A++ + K
Sbjct: 227 PGGLKGFGPKKAIDTVKK 244
>gi|337283806|ref|YP_004623280.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
gi|334899740|gb|AEH24008.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
Length = 341
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 57/242 (23%)
Query: 304 LELGTDKKRRPYVSRK-------MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQG 356
LE G ++ R Y R + +A++LL+L G+P I AP E EAQ A +
Sbjct: 109 LERGNIEEARKYAQRATRVNEALVEDAKKLLELMGIPVIQAPSEGEAQAAYIAAKGAVYA 168
Query: 357 VITDDSDIWLFGARTVYKN--------------FFDKKSHVLRYTAPDIRYYFELTREKL 402
+ D D LFGA + +N + D K ++ ++ ++ REKL
Sbjct: 169 SASQDYDSLLFGAPRLVRNLTITGKRKLPGKDVYVDVKPELI--VLEEVLKALKIDREKL 226
Query: 403 IQLALLVGSDYTP-GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPD 461
I+LA+LVG+DY P G++G+GP ALEI +R K+ LAK
Sbjct: 227 IELAILVGTDYNPGGVKGIGPKKALEI------------------VRHSKDPLAK----- 263
Query: 462 THLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQN 521
+K+ +V L ++ E +L P + N + L W PD +G+ +F ++ +S+
Sbjct: 264 ---WQKVSDVDL------YAIKEFFLNPPVTDNYE-LKWKEPDEEGILKFLCDEHDFSEE 313
Query: 522 RV 523
RV
Sbjct: 314 RV 315
>gi|3047083|gb|AAC13596.1| similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana]
Length = 362
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 104/212 (49%), Gaps = 29/212 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP + A EAEAQCA+L GV ++D D FGA ++ D S
Sbjct: 174 DCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSS 233
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I +LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 234 RKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET- 292
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + ++ +++P + + +PD+ T+ ++L
Sbjct: 293 ----ILENLNK-------------------ERYQIPEEWPYNEARKLFKEPDVITDEEQL 329
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTLI 528
W +PD +G+ +F N+ G++ +RV +
Sbjct: 330 DIKWTSPDEEGIVQFLVNENGFNIDRVTKVCF 361
>gi|393213357|gb|EJC98853.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 403
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 12/206 (5%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P +VAP EAEAQCA L G ++D D F A +Y++
Sbjct: 141 ECRKLLGLMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILYRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + E+ + I L +L+G DY ++G+GP +AL+++ D
Sbjct: 201 KKQPISEINLQKALEGLEMNMSQFIDLCILLGCDYLEPIKGIGPKSALKLV-----RDYG 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+ ++E +R + +K +++ D++P + + +PD I
Sbjct: 256 DLGAVIEHLREKTAAKEEAA---EEGKKKKGGIQVPDEWPWEEAKKVFEQPDVIPAEKVD 312
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL +F + G+++ RV
Sbjct: 313 LEWKAPDVDGLVQFLVTEKGFNEERV 338
>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
gi|343485003|dbj|BAJ50657.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
Length = 344
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 50/232 (21%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
A +LL+ GVP+++AP E EAQ A + + D D LFG+ + +N S
Sbjct: 138 AADLLKAMGVPYVMAPSEGEAQAAYMAAKGSVYAAGSQDMDSLLFGSPRLVRNL----SI 193
Query: 383 VLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
V R P + Y E LTRE+LI + LLVG+DY+P ++GVGP TAL
Sbjct: 194 VGRRKLPGRKEYVEVVPEIIYLDKLLASLGLTREQLIDIGLLVGTDYSPQVRGVGPKTAL 253
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+I+ ++ + + VE +F +V + +
Sbjct: 254 KIVKEYGSLEKAVETGAVEV-----------------------------EFDVQTVRQLF 284
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
LKP + T+ L W P + + +F +S+ RV + L + + +S+RS
Sbjct: 285 LKPRV-TDDYTLNWREPSEEMVMELLVEEFDFSRERVGKALAELRQTLSKRS 335
>gi|318055766|ref|NP_001187811.1| flap endonuclease 1-b [Ictalurus punctatus]
gi|308324033|gb|ADO29152.1| flap endonuclease 1-b [Ictalurus punctatus]
Length = 380
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L GVP+I AP EAEA CA+L T+D D FG + ++
Sbjct: 140 ECKKLLTLMGVPYIEAPCEAEASCAALVKAGKAYATATEDMDGLTFGTSVLLRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L+ ++ I L +L+G DY ++G+GP A++++ ++ +
Sbjct: 200 KKLSIQEFHFSRVLQEMSLSHQQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQYGSIEEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
N ++WL K+ + +L+P+ ++ +
Sbjct: 260 LDNIDQSKHPAPEDWLYKEARA------------------------LFLEPEVVDCTAME 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD DGL +F ++ +S++R+ IMK
Sbjct: 296 LKWNEPDEDGLVQFMCSEKQFSEDRIRNGCKKIMK 330
>gi|407034393|gb|EKE37191.1| flap nuclease, putative [Entamoeba nuttalli P19]
Length = 376
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LLQL G+P I A EAE CA+L T+D D G+ V + F +
Sbjct: 141 EVKKLLQLMGIPCIEANCEAEGSCAALVKAGKCYATATEDMDALTLGSEHVVRKFSASDN 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + Y+ I T E+ I L +L+G DY ++GVGP+TA E++ ++ ++
Sbjct: 201 KKDPIREYSLSSILEETGFTMEQFIDLCILLGCDYCETIKGVGPITAFELIQQYKSIENI 260
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
Q ++ + + +NW K+ + E +L PD+ + + K
Sbjct: 261 LQ-HLSDKYKVPENWKYKEAR------------------------ELFLHPDVADFSDYK 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
L W D +G++++ + +++ RV + +
Sbjct: 296 LEWNKIDEEGIKKYLVTEKHFNEERVTKGI 325
>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
gi|317374901|sp|C4M6G8.1|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710440|gb|EMD49517.1| Flap endonuclease, putative [Entamoeba histolytica KU27]
Length = 376
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LLQL G+P I A EAE CA+L T+D D G+ V + F +
Sbjct: 141 EVKKLLQLMGIPCIEANCEAEGTCAALVKAGKCYATATEDMDALTLGSEHVVRKFSANDN 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + Y+ I T E+ I L +L+G DY ++GVGP+TA E++ ++ ++
Sbjct: 201 KKDPIREYSLSSILEETGFTMEQFIDLCILLGCDYCETIKGVGPITAFELIQQYKSIENI 260
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
Q ++ + + +NW K+ + E +L PD+ + + K
Sbjct: 261 LQ-HLSDKYKVPENWKYKEAR------------------------ELFLHPDVADFSDYK 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
L W D +G++++ + +++ RV + +
Sbjct: 296 LEWNKIDEEGIKKYLVTEKHFNEERVSKGI 325
>gi|239607122|gb|EEQ84109.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 816
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 26/231 (11%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
+ R + ++ L+ LF P APGEAEA+CA L+ V+++D D +FG++ N
Sbjct: 101 LGRVIRRSKYLIDLFRFPHHTAPGEAEAECARLQTSGVVDAVMSNDVDAIMFGSKVTIMN 160
Query: 376 FFDKKS-------HVLRY----TAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
F + S HV Y T + + L R +I ALL G DY P G+ GP
Sbjct: 161 FSKENSSGTNAATHVTLYRTEGTGDEEKPNVPLDRGGMILFALLSGGDYLPAGVPKCGPK 220
Query: 424 TALEIL-AKF------SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDD 476
A EI+ A F + SP++ + R + + + K + V++ D+
Sbjct: 221 LAGEIVQAGFGNELLQAIEGSPSEVAMKLGKWRERLQTELHENGEGYFRSKHKVVQIPDN 280
Query: 477 FPNVSVIEAYLKP------DINTNVQKLAWGTP-DLDGLRRFAANKFGWSQ 520
FP++ V+ Y P +N Q W D++GLR F FGW
Sbjct: 281 FPDLKVLRDYTHPVVSSAEKLNEVRQSFKWDQAIDIEGLRNFVWKDFGWQH 331
>gi|50292567|ref|XP_448716.1| hypothetical protein [Candida glabrata CBS 138]
gi|74608857|sp|Q6FM28.1|FEN1_CANGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49528028|emb|CAG61679.1| unnamed protein product [Candida glabrata]
Length = 381
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 28/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVY----KNFF 377
EA++LL+L G+P++ APGEAEAQCA L ++D D + RT Y F
Sbjct: 138 EAKKLLELMGIPYVNAPGEAEAQCAELAKKGKVYAAASEDMDTLCY--RTPYLLRHLTFS 195
Query: 378 DKKSHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+ + + +I ELT ++ I L +++G DY ++GVGPVTAL+++ + +
Sbjct: 196 EARKEPIHEINTEIVLQGLELTIDQFIDLGIMLGCDYCDSIKGVGPVTALKLMKEHGSLE 255
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNV 495
+ +ES W K+ +++P E ++KPD I+ N
Sbjct: 256 KIVE--YIESGEANNKW------------------KVPENWPYKEARELFVKPDVIDANE 295
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P D L ++ ++ +S+ RV
Sbjct: 296 IDLKWTPPKEDELIQYLCHEKKFSEERV 323
>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
gi|317374871|sp|B0UXL7.1|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
homolog; AltName: Full=Flap structure-specific
endonuclease 1 homolog
Length = 350
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 26/203 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK- 380
E LL L GVP I APGEAEA CA L V ++D D FG + + K+
Sbjct: 112 ECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRD 171
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
S + Y+ P + +L E+ + L +L+G DY + G+GP AL+++ +
Sbjct: 172 SEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLI---------KE 222
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
++ +E + H+ RK + LN + + + + P I+ V LAW
Sbjct: 223 HHTIEGVME-------------HVNRKTHPIPLNWQYKDARKL-FFETPKIDDPV--LAW 266
Query: 501 GTPDLDGLRRFAANKFGWSQNRV 523
PD +GL +F + + RV
Sbjct: 267 SEPDEEGLVQFLCKEKPLKEERV 289
>gi|403341860|gb|EJY70247.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 404
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 20/221 (9%)
Query: 312 RRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 370
R V+ +M+E A++LL+L G P + APGEAEAQCA + ++D D FG
Sbjct: 134 RSIRVTPEMMEDAKKLLRLMGTPVVEAPGEAEAQCAVIVKHGLAYATASEDMDSLTFGTN 193
Query: 371 TVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILA 430
+ + F KK +++ + F L E+ I L +L G DYT + GVGPV A
Sbjct: 194 VLLRGFNSKKEPIIQIDLAQVLEGFNLNHEQFIDLCILCGCDYTTNIPGVGPVKAF---- 249
Query: 431 KFSPSDSPNQNYIVESMRRFKNWLAKKNK---PDTHLTRKLRNV-KLNDDFPNVSVIEAY 486
KF + ++ + + + KK K P+T ++ R + K+ +++ +E
Sbjct: 250 KFISEEGGTIENVISRIEKENDDPKKKKKYTIPETFYYKEARELFKVPSAISDIAELEKI 309
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+K + PD L+ F G+ + +V+ +
Sbjct: 310 IK-----------FNKPDEVALKEFLVTSKGFQEIKVENGI 339
>gi|256064183|ref|XP_002570412.1| flap endonuclease-1 [Schistosoma mansoni]
Length = 241
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 330 FGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRY 386
GVPF+ APGEAEAQCA L V T+D D FG + ++ +K + +
Sbjct: 1 MGVPFVNAPGEAEAQCAVLAKSGKVYAVGTEDMDALAFGTPVLLRHLTFSEARKMAIQEF 60
Query: 387 TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN----- 441
+ LT ++ I L +L+G DY ++G+GP AL++L K+ D +N
Sbjct: 61 NLTSVLEGLGLTMDQFIDLCILLGCDYVDTIRGIGPKKALDLLHKYQSIDCVLKNIDKSK 120
Query: 442 YIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQKLAW 500
YIV DD+P + +L P++ + + +L W
Sbjct: 121 YIVP-----------------------------DDWPYEDAKKLFLNPEVTDPSSIELKW 151
Query: 501 GTPDLDGLRRFAANKFGWSQNRV 523
PD +GL F +K G+++ R+
Sbjct: 152 NEPDEEGLVEFLCHKHGFNEERI 174
>gi|302418945|ref|XP_003007303.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261352954|gb|EEY15382.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 833
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 23/230 (10%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF----- 377
A+ L++LFG P APGEAEA+CA L+ V+++D D +FG ++N+
Sbjct: 103 AKRLIRLFGFPIHQAPGEAEAECALLQQEGLVDAVLSEDVDTIMFGCSRTFRNWSAEGLR 162
Query: 378 --DKKSHVLRY-TAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKF 432
+HV Y T L R+ ++ +AL+ G DY P G+ G G A E+ A F
Sbjct: 163 GGKSPTHVTVYDTNEQSLVASGLDRQGMVLVALMSGGDYLPEGVPGCGLKLACEVARAGF 222
Query: 433 SPS----DSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLK 488
S + ++ I E + L + + K + + + D+FP+V V+ Y
Sbjct: 223 GKSLCSLKAADKTGIDEWRANLTHEL--RTNENKFFRTKHKAIVIPDNFPDVKVLRFYTH 280
Query: 489 PDINTN------VQKLAWGTP-DLDGLRRFAANKFGWSQNRVDQTLIPIM 531
P +++ + + W P D+ GLRRF F W+ LI ++
Sbjct: 281 PAVSSKAAVENLIGSVEWSRPVDIGGLRRFTDEVFDWTNRPGAVKLIKVL 330
>gi|336259381|ref|XP_003344492.1| hypothetical protein SMAC_08742 [Sordaria macrospora k-hell]
gi|317376194|sp|D1ZT73.1|FEN1_SORMK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|380087456|emb|CCC05373.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q+LL+L G+P+IVAP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 ECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFHTPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + L +L+G DY + VGP TAL+++ +
Sbjct: 200 RKEPIQEIHTDKVLEGLGMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHG----- 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ W+ K ++ +D+P + +PD+ L
Sbjct: 255 -------TLEEVVEWMKADPKG---------RYQIPEDWPFEDARALFFEPDVRPADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
W PD++GL +F A++ G+S++RV I + K +
Sbjct: 299 CDFKWEKPDIEGLVQFLAHEKGFSEDRVRSASIKLQKNM 337
>gi|346979176|gb|EGY22628.1| hypothetical protein VDAG_04066 [Verticillium dahliae VdLs.17]
Length = 828
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 19/228 (8%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A+ L++LFG P APGEAEA+CA L+ V+++D D +FG ++N+ + S
Sbjct: 103 AKRLIRLFGFPIHQAPGEAEAECALLQQEGLVDAVLSEDVDTIMFGCSRTFRNWSAEGSR 162
Query: 382 ------HVLRY-TAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKF 432
HV Y T L R ++ +AL+ G DY P G+ G G A E+ A F
Sbjct: 163 GGKSPTHVTVYDTNEQSLIASGLDRHGMVLVALMSGGDYLPEGVPGCGLKLACEVARAGF 222
Query: 433 SPSDSPNQNYIVESMRRFKNWLAK--KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
S + M ++ L + + K + + + D+FP+V V+ Y P
Sbjct: 223 GKSLCSLKAADKAGMDDWRANLTHELRTNENKFFRTKHKAIVIPDNFPDVKVLRFYTHPA 282
Query: 491 INTNVQ------KLAWGTP-DLDGLRRFAANKFGWSQNRVDQTLIPIM 531
+++ + W P D+ GLRRF F W+ LI ++
Sbjct: 283 VSSKAAVENLFGSVEWSRPVDIGGLRRFTDEVFDWTNRPGAVKLIKVL 330
>gi|357601961|gb|EHJ63212.1| flap endonuclease-1 [Danaus plexippus]
Length = 266
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P + AP EAEAQCA L G V T+D D FGA + ++
Sbjct: 28 EARQLLKLMGIPVVEAPCEAEAQCAELVKGGKVYAVATEDMDALTFGANVLLRHLTFSEA 87
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + + EL + + I L +L+G DY ++G+GP A+E++ + +
Sbjct: 88 RKMPVQEFHLDQVLRGLELEQTEFIDLCILLGCDYCGSIKGIGPKRAIELIKQHRSIEQV 147
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
N + +NW + R+L F V EA D+ +L
Sbjct: 148 LHNIDTKKYSPPENW-------EYENARRL--------FQQPEVTEA---KDV-----EL 184
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
W PD +GL +F +++ RV +MK
Sbjct: 185 KWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMK 218
>gi|400598682|gb|EJP66391.1| DNA-repair protein rad2 [Beauveria bassiana ARSEF 2860]
Length = 394
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+P+I+AP EAEAQCA L ++D D F + + ++ F ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAVLAKAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPIQEIHLDKVLEGLNMKRKQFVDLCILLGCDYLDPIPKVGPTTALKLIREHGSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE+M + + + +D+P + + +PD+ L
Sbjct: 259 ----VVEAME----------------SDSKKKYTIPEDWPYKDARDLFFEPDVRPADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD+DGL +F + G+S++RV
Sbjct: 299 CDVKWDKPDMDGLVQFLVAEKGFSEDRV 326
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+P+I+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVL 166
>gi|317376210|sp|C4JDR3.2|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F + + ++
Sbjct: 140 ECKKLLKLMGIPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + R+ + L +L+G DY + VGP TAL+++ D
Sbjct: 200 RKEPILEIHLDRVLEGLGMDRKTFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE+M KN P T + DD+P + + +PD+
Sbjct: 255 SLEKVVEAM---------KNDPKQKYT-------IPDDWPYEQARDLFFEPDVRPADHPE 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F G+S++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVEGKGFSEDRV 326
>gi|325186427|emb|CCA20932.1| flap endonuclease 1 putative [Albugo laibachii Nc14]
Length = 389
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
S+ + +ELL+L GVP + AP EAEA CA+L + T+D D+ FG +Y+
Sbjct: 139 TSQHSQDCKELLRLMGVPVLTAPCEAEATCATLAKHHKVYASGTEDMDVLTFGTPVLYRR 198
Query: 376 F---FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
+KK +L +LT ++ + L +L G DY ++G+GP A + +
Sbjct: 199 MTVAANKKVPILEIKLEQALKALDLTEQQFVDLCILCGCDYCDSIRGIGPKKAFNGIKEH 258
Query: 433 SP--------SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
S N+ ++ + WL D + ++ R + +N + +V+ ++
Sbjct: 259 KTIENFLQHLQQSNNKGVVIP-----EEWLG-----DDPIYKRAREMFVNAEVVDVNEVD 308
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
L W P D L RF +K G+ +RV ++ + K S +S
Sbjct: 309 -------------LKWKEPLADELSRFLVDKHGFRADRVTTAIVKLKKSRSSQS 349
>gi|268571629|ref|XP_002641105.1| Hypothetical protein CBG17486 [Caenorhabditis briggsae]
Length = 437
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 25/223 (11%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH--- 382
LL GV I++PG+ EAQCA LE T G IT D D +LFG + +Y+ F +
Sbjct: 119 LLSQMGVKVIISPGDGEAQCARLEELEVTSGCITTDFDYFLFGGKNLYRFDFTASGNVAL 178
Query: 383 ---VLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALEILAKFSPSDSP 438
V+ + + ++ R LI A+L+G DY G+Q +G VT +ILA+F D
Sbjct: 179 LHDVVHLSLGRMNIEKKVDRPHLISTAILLGCDYFQRGVQNIGIVTVFDILAEF--GDDG 236
Query: 439 NQN---YIVESMRRFKNWLAKK---NKPDTHLTRKLRNVKLN--DDFPNVSVIE----AY 486
N++ +++ + RF +++ ++ D+ +LR K N FPN +E Y
Sbjct: 237 NEDVDPHVI--LDRFYSYVKEEIPARSEDSSRKLRLRRKKFNFPQGFPNCQAVENAVKMY 294
Query: 487 LKPDI-NTNVQKLAWGTP-DLDGLRRFAANKFGWSQNRVDQTL 527
L+P + +T Q A +P ++ + + GWS R+ + L
Sbjct: 295 LQPSVYHTMPQSSAAPSPVSMEKIELILKKECGWSPERLQKEL 337
>gi|283481241|emb|CAZ69357.1| putative endonuclease [Emiliania huxleyi virus 99B1]
Length = 358
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E +++L L G+P + AP EAEA CA+ T+D D FG+ V ++
Sbjct: 138 EVKKMLTLMGIPVVQAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQ 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + Y+ P+I +T ++ I++ +L G DYT ++G+GP A +++ + S +
Sbjct: 198 KKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHSTIE-- 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
IV + + K+ A+ + + DD+P +V + + PD++ Q+L
Sbjct: 256 ----IVLDVLKKKHGEAQ------------FSTMVPDDYPIEAVRDLFNNPDVDI-TQEL 298
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQ 525
W T + D L F +S +RV++
Sbjct: 299 TWNTINRDALIAFLVEDKKFSADRVNK 325
>gi|198417766|ref|XP_002129714.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 380
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 28/217 (12%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF-- 377
M + ++LL+L G+P + AP EAEAQCASL T+D D F + + ++
Sbjct: 138 MDDCKKLLRLMGIPVVEAPTEAEAQCASLVKSGKVYATATEDMDALTFHSSRLLRHLTFS 197
Query: 378 -DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+K + + + E+T E+ + L +L+G DY ++GVGP A +++ ++ D
Sbjct: 198 EARKMPIQEFVYEKVLEEMEMTHEQFVDLCILLGCDYCEHIRGVGPKRAYDLIKQYRSID 257
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
+N L K PD + + R + +L PD+ +
Sbjct: 258 EILKNID----------LKKYTVPDGWVYKDARQL--------------FLAPDVAASED 293
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+L W PD +G+ +F + G++++RV + I++
Sbjct: 294 VELKWNDPDEEGIVKFMVEEKGFNEDRVRSGIKKILQ 330
>gi|348688657|gb|EGZ28471.1| hypothetical protein PHYSODRAFT_294028 [Phytophthora sojae]
Length = 390
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 30/226 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
+ +ELL+L GVP I AP EAEA CA L G T+D D FG +Y+
Sbjct: 146 DCKELLRLMGVPHITAPCEAEASCAELAKGGRVYAAGTEDMDALTFGVPVLYRRLTVSPA 205
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK +L ELT+E+ + L +L G DY ++GVGP A + +
Sbjct: 206 KKIPILEIRLERALQELELTQEQFVDLCILCGCDYCDSIRGVGPKKAFAGI-----KEHK 260
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVI-----EAYLKPD-IN 492
N +E++++ K+ + V + D++ + I E ++KP+ +N
Sbjct: 261 NIENFLEALQKNKS----------------KGVVIPDEWLGENPIYKSAREMFIKPEVVN 304
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+L W P L F K G+ ++RV + + K S +S
Sbjct: 305 AKEAELKWRDPQETELLDFLCKKHGFQEDRVLSAITRLKKSKSTQS 350
>gi|258573689|ref|XP_002541026.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
gi|237901292|gb|EEP75693.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
Length = 413
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F + + ++
Sbjct: 158 ECKKLLKLMGIPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 217
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + R+ + L +L+G DY + VGP TAL+++ D
Sbjct: 218 RKEPILEIHLDRVLEGLGMDRKTFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 272
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE+M KN P T + DD+P + + +PD+
Sbjct: 273 SLEKVVEAM---------KNDPKQKYT-------IPDDWPYEQARDLFFEPDVRPADHPE 316
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F G+S++RV
Sbjct: 317 CDFKWEAPDVEGLVKFLVEGKGFSEDRV 344
>gi|282165429|ref|YP_003357814.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
gi|282157743|dbj|BAI62831.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
Length = 339
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 47/229 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN------ 375
+++ELL G+PF++AP E EAQ A + V + D D LFGA + +N
Sbjct: 133 DSKELLGYMGMPFLIAPSEGEAQAAYMVQKGAADFVGSQDYDSLLFGAPRMVRNVTITGR 192
Query: 376 --------FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
+ D K ++ ++ E+TRE+LI + +LVG+D+ PG+ VGP TAL+
Sbjct: 193 RKIPRRGVYVDVKPQIVELK--EVLETLEVTREQLIDMGILVGTDFNPGIYKVGPKTALK 250
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
++ K P+ I++ +L D N I +
Sbjct: 251 LVKK-----HPDMRAILD--------------------------ELGQDIENYQEIREFF 279
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
T+ + WG P+ + +R F ++ +S RVD+ + + + +S+
Sbjct: 280 LHPPTTDDYSIKWGRPEPEKIRHFLCDEHNFSPERVDKVIERLDRAVSE 328
>gi|440797493|gb|ELR18579.1| XPG Iregion domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 434
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 28/210 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK--NFFD- 378
E ++LL+L G+P + AP EAEAQCA L ++D D F + + N+ +
Sbjct: 105 ECKKLLRLMGIPVVEAPTEAEAQCAELCRAGKVFATGSEDMDSLTFATPILLRHLNYAEA 164
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K ++ + F +T E+ I L +L G DY ++G+GP ALE++ K+ +
Sbjct: 165 QKKPIIEIDLEKVLKGFGMTMEQFIDLCILAGCDYCDTIRGIGPKRALEMIRKYGSIEGT 224
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+N L K P L + FP +V E + PD+ Q +
Sbjct: 225 LKN------------LDKAKYP------------LPEPFPYEAVRELFKHPDVTPGDQVE 260
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
L WG PD +GL ++ + +++ RV + +
Sbjct: 261 LKWGEPDEEGLLQYLVKEKQFNEERVRKGI 290
>gi|396499081|ref|XP_003845386.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
gi|312221967|emb|CBY01907.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
Length = 423
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+PFIVAP EAEAQCA L G ++D D F + + ++
Sbjct: 168 ECRRLLKLMGIPFIVAPTEAEAQCAVLARGGKVYAAASEDMDTLTFNSPILLRHLTFSEQ 227
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + R + I L +L+G DY ++G+GP TAL+++ +
Sbjct: 228 RKEPILEIHLDKVLEGLAMDRTQFIDLCILLGCDYLDPIKGIGPSTALKLI-----REHK 282
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+ +V+ + +++P LT + +D+P +L+PD+ +
Sbjct: 283 DLEGVVKHI---------QSQPKGKLT-------IPEDWPFADARLLFLEPDVRPADDPE 326
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 327 CDFKWEAPDVEGLVKFLVEEKHFSEDRV 354
>gi|320165003|gb|EFW41902.1| flap endonuclease 1-B [Capsaspora owczarzaki ATCC 30864]
Length = 388
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L GVP+I AP EAEAQCA+L T+D D FG++ + ++
Sbjct: 140 ECKRLLTLMGVPYISAPCEAEAQCAALVKSGSVFAAGTEDMDALTFGSKVLLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + +LT E+ + L +L+G DY ++G+GP A ++ ++ +
Sbjct: 200 RKMPIKEFNLDRALEGLKLTMEQFVDLCILLGCDYCESIKGIGPTRAYALIQEYKTIEEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+N E NW F + +L+P++ +
Sbjct: 260 IKNLDTEKYPLPANWA----------------------FAEARTL--FLEPEVTPGEELD 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD++GL +F + G+S++R+
Sbjct: 296 LKWTAPDVEGLVKFMVQEKGFSEDRI 321
>gi|340624624|ref|YP_004743077.1| flap endonuclease-1 [Methanococcus maripaludis X1]
gi|339904892|gb|AEK20334.1| flap endonuclease-1 [Methanococcus maripaludis X1]
Length = 324
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EA+ Q E+ KR ++ RK ++ +++LL+L G+P++ AP E EAQCA L N+
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDRKTVDNSKKLLELMGIPYVNAPSEGEAQCAELVKANNA 166
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
VI+ D D L+GA V KN + ++ ++LI A+L+G+DY
Sbjct: 167 FCVISQDYDSILYGADYVVKNITSSNKDIELIELEKTLSGLNISCDQLIDAAILIGTDYN 226
Query: 415 P-GLQGVGPVTALEILAKFSPSDSPNQNYIVE 445
P GL+G GP A++ + K +NYI E
Sbjct: 227 PGGLKGFGPKKAIDTVKK-----GKMENYISE 253
>gi|340516246|gb|EGR46495.1| predicted protein [Trichoderma reesei QM6a]
Length = 791
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 19/215 (8%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF----- 376
A+ L++LFG APGEAEA+CA L+ V+++D D +FG +N+
Sbjct: 97 HAKRLIRLFGFVVHDAPGEAEAECALLQRNGIVDAVLSEDVDTIMFGCTRTLRNWSAEGK 156
Query: 377 FDKKSHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFS 433
K +HV Y ++ L RE ++ +AL+ G DY P G+ G GP A E A F
Sbjct: 157 AGKPTHVSMYDVEEMNMANLGLDREGMVLVALMSGGDYIPEGVPGCGPKVACEAAKAGFG 216
Query: 434 PSDSPNQNYIVESMRRFKNWLAKK---NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
S + E +R++K L + N+ TR + + + +DFPN+ + Y P
Sbjct: 217 KSLCRLRVSDAEGLRKWKASLTHELQTNESKFFRTRH-KALVIPEDFPNIEALRYYTHPV 275
Query: 491 INTNV------QKLAWGTP-DLDGLRRFAANKFGW 518
++ Q+L+ L+GLR FA F W
Sbjct: 276 VSPESTLEAVRQRLSETREIQLEGLREFARETFNW 310
>gi|347601761|gb|AEP16246.1| flap endonuclease 1 [Emiliania huxleyi virus 208]
Length = 358
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E +++L L G+P + +P EAEA CA+ T+D D FG+ V ++
Sbjct: 138 EVKKMLTLMGIPVVQSPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQ 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + Y+ P+I +T ++ I++ +L G DYT ++G+GP A +++ + S
Sbjct: 198 KKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIKGIGPTRAYQLIQEHS----- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + L KK+ + T + DD+P +V + + P+++ Q+L
Sbjct: 253 -------TIENVLDVLKKKHGEEQFSTM------VPDDYPIEAVRDLFNNPEVDI-TQEL 298
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQ 525
W T + D L F + +S +RV++
Sbjct: 299 TWNTINRDALIAFLVEEKKFSADRVNK 325
>gi|150399374|ref|YP_001323141.1| flap endonuclease-1 [Methanococcus vannielii SB]
gi|150012077|gb|ABR54529.1| XPG I [Methanococcus vannielii SB]
Length = 324
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR ++ +K +E ++ LL+L GVP+I AP E EAQCA L + V++ D D L+GA
Sbjct: 122 KRANFLDKKTIENSKRLLELMGVPYINAPSEGEAQCAELVKSKNASFVVSQDYDSILYGA 181
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI 428
+V KN + + + +LI +A+L+G+DY P G++G+GP A E+
Sbjct: 182 ESVVKNITSSNKSLELIELSKVLTELNVNLLELIDVAILIGTDYNPGGIKGIGPKKAFEV 241
Query: 429 LAK 431
+ K
Sbjct: 242 VKK 244
>gi|358385848|gb|EHK23444.1| hypothetical protein TRIVIDRAFT_37094 [Trichoderma virens Gv29-8]
Length = 395
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+P+I+AP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPIQEIRLDKVLEGLNMERDQFVDLCILLGCDYLDPVPKVGPTTALKLIREHGSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE++ + P T L +D+P E + PD+ L
Sbjct: 259 ----VVEAIEK---------DPKKKYT-------LPEDWPYKDARELFFNPDVRQADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + G+S++RV
Sbjct: 299 CDFKWDKPDMEGLVQFLVTEKGFSEDRV 326
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+P+I+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVL 166
>gi|332029054|gb|EGI69068.1| Flap endonuclease GEN [Acromyrmex echinatior]
Length = 736
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 313 RPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
R +R + E +ELL+ GV + + GEAEA CA L G I+ DSD +L+GA+ V
Sbjct: 101 RTQFNRVLNECKELLRYMGVACVQSYGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVV 160
Query: 373 YKNFFDKKSH---------VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPV 423
Y+NF +H V Y+ I + R K+I LALL G DY G+ GVG
Sbjct: 161 YRNFC-MSTHGNCGATGGSVDVYSMEKIEKTLNIGRNKMIALALLCGCDYDEGVNGVGKE 219
Query: 424 TALEIL 429
L+
Sbjct: 220 ATLKFF 225
>gi|395646325|ref|ZP_10434185.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
gi|395443065|gb|EJG07822.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
Length = 333
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 47/231 (20%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
+ ++ LL L G+P++VAP E EAQ A + + D D LFGA + +N
Sbjct: 133 IASSKRLLDLMGIPWMVAPSEGEAQAAFMARQGDVGAAASQDYDALLFGAPRLVRNLTVS 192
Query: 380 KSHVLRYTAPDIR----------YYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+R + +R L+RE+L+++ +L+G+D+ PG++GVG TAL+I+
Sbjct: 193 GKRKVRGRSVTVRPERIDLAAVLAGLGLSREELVEIGILIGTDFNPGIRGVGAKTALKIV 252
Query: 430 --AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
KF + ++ P DF V E +L
Sbjct: 253 RGGKFQET-------------------VQEKAP---------------DFDPGPVQEFFL 278
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
P + T +L W PD DG+ ++ +S+ R+D L I K QR+
Sbjct: 279 NPPV-TGDYRLEWREPDRDGIVAMLCGEYTFSEGRIDAGLQKIGAKAGQRT 328
>gi|317374923|sp|A7UW97.2|FEN1_NEUCR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 394
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q+LL+L G+P+IVAP EAEAQCA L ++D D F A + ++
Sbjct: 140 ECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ I L +L+G DY + VGP TAL+++ +
Sbjct: 200 RKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDPIPKVGPSTALKLIREHG----- 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + W+ K ++ +D+P + +PD+ L
Sbjct: 255 -------TLEKVVEWMKADPKG---------RYQIPEDWPFEDARTLFFEPDVRPADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F ++ G+S++RV
Sbjct: 299 CDFKWDKPDIEGLIQFLVHEKGFSEDRV 326
>gi|317419778|emb|CBN81814.1| Flap endonuclease 1-B [Dicentrarchus labrax]
Length = 380
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 36/219 (16%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ ++LL L GVP+I AP EAEA CA+L T+D D FG + ++ ++
Sbjct: 140 DCKKLLTLMGVPYIEAPCEAEATCAALVKAGKVFATATEDMDGLTFGTNVLLRHLTASEA 199
Query: 382 HVLRYTAPDIRYYFE-------LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
L P ++F LT E+ I L +L+G DY ++G+GP A++++ +
Sbjct: 200 KKL----PIQEFHFSRMLQDIGLTNEQFIDLCILLGCDYCATIKGIGPKRAIDLIRQHGC 255
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INT 493
+ +N ++WL K+ R+L +LKP+ ++
Sbjct: 256 IEEILENIDPNKHPSPEDWLYKE-------ARRL-----------------FLKPEVVDC 291
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ +L W PD D L +F N+ +S++R+ IMK
Sbjct: 292 STVELKWSEPDEDALIQFMCNEKQFSEDRMRNGCKKIMK 330
>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe 972h-]
gi|730469|sp|P39750.1|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
repair protein rad2; AltName: Full=Flap
structure-specific endonuclease 1
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe]
gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ LL+L G+PF+ AP EAEAQCA+L ++D D F A + ++
Sbjct: 141 EAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQ 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + Y +++ E+ + L +L+G DY ++GVGP A+E++ ++ D
Sbjct: 201 RKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLD-- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
RF + P + +D+P +L ++ + +
Sbjct: 259 ----------RFVKEADRSKYP------------IPEDWPYEDARRLFLDAEVLPGEEIE 296
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W +PD DG+ +F + G++++RV
Sbjct: 297 LKWKSPDADGIIQFLVKEKGFNEDRV 322
>gi|242045348|ref|XP_002460545.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
gi|241923922|gb|EER97066.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
Length = 590
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
K+R +R + E ELL+ G+P + A GEAEA CA L H IT DSD +LFGA
Sbjct: 119 KRRNAAFTRCVEECVELLEYLGMPVLRAKGEAEALCAQLNNEGHVDACITADSDAFLFGA 178
Query: 370 RTVYKNF-FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALE 427
+TV K F + K Y DI L R++++ +ALL+GSD+ G+ G G TAL
Sbjct: 179 KTVVKVFRSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHDLHGVPGFGLETALR 238
Query: 428 ILAKF 432
+ F
Sbjct: 239 FVQLF 243
>gi|448098848|ref|XP_004199006.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359380428|emb|CCE82669.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 105/218 (48%), Gaps = 25/218 (11%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+R+ EA++LL+L G+P++ AP EAEAQCA+L ++D D +
Sbjct: 93 KRTVRVTREQNQEAKKLLELMGIPYVDAPCEAEAQCAALARKGKVFAAASEDMDTICYEP 152
Query: 370 RTVYKNFFDKKSHVL---RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ ++ L + + E+ ++ I L +L+G DY ++GVGPVTA
Sbjct: 153 PFLLRHLTVAEARKLPIDQIEYSKVLESLEMDKDTFIDLCILLGCDYCETIKGVGPVTAF 212
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + D IVE + PD K+ +++P E +
Sbjct: 213 KLIKEHGSLDK-----IVEYL---------SANPDK------TKYKVPENWPYNEARELF 252
Query: 487 LKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
L P++ N + L W PD++GL + + G+S+ R+
Sbjct: 253 LHPEVQNADDINLKWKEPDVEGLIEYMVKQKGFSEERI 290
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 29/34 (85%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
+T + ++EA++LL+L G+P++ AP EAEAQCA+L
Sbjct: 98 VTREQNQEAKKLLELMGIPYVDAPCEAEAQCAAL 131
>gi|347838761|emb|CCD53333.1| similar to flap endonuclease 1 [Botryotinia fuckeliana]
Length = 395
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+I+AP EAEAQCA+L ++D D F + + ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAALARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + + R++ + L +L+G DY + +GP TAL+++ +
Sbjct: 200 RKEPIQEVSLEKVLTGLNMDRKQFVDLCILLGCDYLDPIPKIGPHTALKLIREHG----- 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK- 497
+ W+ K + +D+P E + KPD+ +
Sbjct: 255 -------DLETLVAWITADKK---------ERYAIPEDWPYQDARELFFKPDVRPADHED 298
Query: 498 --LAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + G+S++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVIEKGFSEDRV 326
>gi|150402483|ref|YP_001329777.1| flap endonuclease-1 [Methanococcus maripaludis C7]
gi|150033513|gb|ABR65626.1| XPG I [Methanococcus maripaludis C7]
Length = 324
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EA+ Q E+ KR ++ +K ++ +++LL+L G+P+I AP E EAQCA L N
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDA 166
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
VI+ D D L+GA V KN + ++ +LI +A+L+G+DY
Sbjct: 167 FCVISQDYDSILYGAENVVKNITSSNKDIELIELQKTLSELNVSLNQLIDVAILIGTDYN 226
Query: 415 P-GLQGVGPVTALEILAK 431
P GL+G GP A++ + K
Sbjct: 227 PGGLKGFGPKKAIDTVKK 244
>gi|17555016|ref|NP_498361.1| Protein GEN-1 [Caenorhabditis elegans]
gi|351050616|emb|CCD65214.1| Protein GEN-1 [Caenorhabditis elegans]
Length = 434
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 38/288 (13%)
Query: 280 QELLQLFGVPFIV-----APGEAEAQCASLELGTDKKRR----PYVS--RKMLEAQELLQ 328
Q LL+L +P +V A A E K+R P+ + + + LL
Sbjct: 62 QRLLELKIIPIVVFDNINASSSAHESKDQNEFVPRKRRSFGDSPFTNLVDHVYKTNALLT 121
Query: 329 LFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS------H 382
G+ I+APG+ EAQCA LE T G IT D D +LFG + +Y+ F + H
Sbjct: 122 ELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDYFLFGGKNLYRFDFTAGTSSTACLH 181
Query: 383 VLRYTAPDIRYYFE--LTREKLIQLALLVGSDY-TPGLQGVGPVTALEILAKFSPSDSPN 439
+ + + R + E ++R LI A+L+G DY G+Q +G V+ +IL +F D N
Sbjct: 182 DIMHLSLG-RMFMEKKVSRPHLISTAILLGCDYFQRGVQNIGIVSVFDILGEF--GDDGN 238
Query: 440 QN---YIVESMRRFKNWLAKK---NKPDTHLTRKLRNVKLN--DDFPNV----SVIEAYL 487
+ +++ + RF +++ ++ DT +LR K N FPN + I YL
Sbjct: 239 EEIDPHVI--LDRFASYVREEIPARSEDTQRKLRLRRKKYNFPVGFPNCDAVHNAITMYL 296
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL-IPIMKKI 534
+P +++ + K+ + + + GW R + L + I +K+
Sbjct: 297 RPPVSSEIPKIIPRAANFQQVAEIMMKECGWPATRTQKELALSIRRKV 344
>gi|393219213|gb|EJD04700.1| hypothetical protein FOMMEDRAFT_153772 [Fomitiporia mediterranea
MF3/22]
Length = 1041
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 118/286 (41%), Gaps = 62/286 (21%)
Query: 309 DKKRRPYVSRK---------MLEA-QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVI 358
D RRP + RK M+ QE+++ FG + APGEAEA+ A L +I
Sbjct: 147 DGPRRPELKRKKKISGKDHWMVSGMQEIIEAFGFEWWCAPGEAEAELAYLNRIGVIDAII 206
Query: 359 TDDSDIWLFGARTVYKNFF-----------------DKKSHVLRYTAPDIRYYFE--LTR 399
TDD D ++FGA + +N D H YT+ DI + E +TR
Sbjct: 207 TDDVDTFVFGATMIMRNPGKMLSGNTSHPIKNTAGKDDGEHTYTYTSSDILEHAEVGITR 266
Query: 400 EKLIQLALLVGSDYTP-GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFK------- 451
LI +ALL G DY P G+ G G A LA+ D+ +VE++R
Sbjct: 267 GGLILIALLRGGDYDPEGIDGFGANIA-HALARCGFGDT-----LVEAVRDLPSSRLPDF 320
Query: 452 --NWLAKKNKPDTHLTRKLRNVK-------LNDDFPNVSVIEAYLKPDINTNVQK---LA 499
NW + +R N K L D FPN+ V+ Y P+ + K
Sbjct: 321 LDNWRTEIRAELRSNSRGFLNSKKAKLAKSLPDTFPNIEVLRLYTNPETSERKNKRPTFL 380
Query: 500 WGT-PDLDGLRRFAANKFGWSQNRV------DQTLIPIMKKISQRS 538
WG PDL L KF W + +PI+ +I +R+
Sbjct: 381 WGREPDLMKLSALCERKFEWGVREIIVKRFRTVMWVPIVLRIMRRA 426
>gi|164426998|ref|XP_001728355.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
gi|157071561|gb|EDO65264.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
Length = 396
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q+LL+L G+P+IVAP EAEAQCA L ++D D F A + ++
Sbjct: 142 ECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQ 201
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ I L +L+G DY + VGP TAL+++ +
Sbjct: 202 RKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDPIPKVGPSTALKLIREHG----- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + W+ K ++ +D+P + +PD+ L
Sbjct: 257 -------TLEKVVEWMKADPKG---------RYQIPEDWPFEDARTLFFEPDVRPADDPL 300
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F ++ G+S++RV
Sbjct: 301 CDFKWDKPDIEGLIQFLVHEKGFSEDRV 328
>gi|341882587|gb|EGT38522.1| hypothetical protein CAEBREN_12338 [Caenorhabditis brenneri]
gi|341895701|gb|EGT51636.1| hypothetical protein CAEBREN_24192 [Caenorhabditis brenneri]
Length = 382
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P + AP EAEAQCA L G T+D D FG+ + ++
Sbjct: 140 EVKHLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTATEDMDALTFGSSVLLRHLLAPES 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + +L+ ++ I L +L+G DY ++GVGP A+E++
Sbjct: 200 KKIPIKEFHLARVLEEMKLSEDEFIDLCILLGCDYCGTIRGVGPKKAVELI--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
Q+ +E++ +N K P +D+P E + +P++ +
Sbjct: 251 RQHKNIETV--LENIDQTKYPPP-------------EDWPYKRARELFREPEVTKGEDVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD++G+ +F +S+ R+ L + K
Sbjct: 296 LTWKEPDVEGIVKFMCGDKNFSEERIRSALTRMQK 330
>gi|350287839|gb|EGZ69075.1| DNA-repair protein rad2, partial [Neurospora tetrasperma FGSC 2509]
Length = 390
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+IVAP EAEAQCA L ++D D F A + ++
Sbjct: 136 ECQRLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQ 195
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ I L +L+G DY + VGP TAL+++ +
Sbjct: 196 RKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDPIPKVGPSTALKLIREHG----- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + W+ K ++ +D+P + +PD+ L
Sbjct: 251 -------TLEKVVEWMKADPKG---------RYQIPEDWPFEDARALFFEPDVRPADDPL 294
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F ++ G+S++RV
Sbjct: 295 CDFKWDKPDIEGLIQFLVHEKGFSEDRV 322
>gi|358398186|gb|EHK47544.1| hypothetical protein TRIATDRAFT_263039 [Trichoderma atroviride IMI
206040]
Length = 812
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 17/214 (7%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---- 377
A+ L++LFG APGEAEA+CA L+ V+++D D +FG KN+
Sbjct: 102 HAKRLIRLFGFIAHDAPGEAEAECAFLQKNGVVDAVLSEDVDTIMFGCTRTMKNWSAEGK 161
Query: 378 -DKKSHVLRYTAPDIRY-YFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFS 433
+ +H+ Y ++ L RE ++ +A++ G DY P G+ G GP A E A F
Sbjct: 162 GTRPTHISMYDVDELNLASLGLDREGMVLVAIMSGGDYIPEGVPGCGPKVACEAAKAGFG 221
Query: 434 PSDSPNQNYIVESMRRFKNWLAK--KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
S + E +RR+K L + + + + + + +DFPN+ V+ Y P +
Sbjct: 222 KSLCQLRASDTEGLRRWKASLIHELETNESKYFRTRHKCLTIPEDFPNMEVLRYYTHPVV 281
Query: 492 NTN-----VQKLAWGTPD--LDGLRRFAANKFGW 518
+ ++ T + L+GLR FA F W
Sbjct: 282 SPESMLDIIRHRLRETREIQLEGLREFARETFNW 315
>gi|343172070|gb|AEL98739.1| endonuclease, partial [Silene latifolia]
gi|343172072|gb|AEL98740.1| endonuclease, partial [Silene latifolia]
Length = 325
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 29/207 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ ++LL L GVP + AP EAEAQCA+L V ++D D FGA ++ D
Sbjct: 141 DCKKLLGLMGVPVVEAPSEAEAQCAALCKNGKVYAVASEDMDSLTFGACKFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + LT ++ I L +L G DY ++G+G +TAL+++ + ++
Sbjct: 201 KKIPVMEFDMAKVLEELNLTMDQFIDLCILSGCDYCDNIKGIGGMTALKLIRQHGSIET- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI--NTNVQ 496
I+E++ + + +A DD+P + +P +
Sbjct: 260 ----ILENLNKERYQIA-------------------DDWPYQEARRLFKEPHVFPENEEP 296
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRV 523
+L W PD +GL F + G++ +RV
Sbjct: 297 ELKWSPPDEEGLVNFLVKENGFNIDRV 323
>gi|336467513|gb|EGO55677.1| DNA-repair protein rad2 [Neurospora tetrasperma FGSC 2508]
Length = 396
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+IVAP EAEAQCA L ++D D F A + ++
Sbjct: 142 ECQRLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQ 201
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ I L +L+G DY + VGP TAL+++ +
Sbjct: 202 RKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDPIPKVGPSTALKLIREHG----- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + W+ K ++ +D+P + +PD+ L
Sbjct: 257 -------TLEKVVEWMKADPKG---------RYQIPEDWPFEDARALFFEPDVRPADDPL 300
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F ++ G+S++RV
Sbjct: 301 CDFKWDKPDIEGLIQFLVHEKGFSEDRV 328
>gi|358394482|gb|EHK43875.1| hypothetical protein TRIATDRAFT_300264 [Trichoderma atroviride IMI
206040]
Length = 395
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+P+I+AP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + L +L+G DY + VGP TAL+++ +
Sbjct: 200 RKEPIQEIHLDRVLEGLNMERKQFVDLCILLGCDYLDPVPKVGPTTALKLIREHG----- 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
S+ + + K +K + L +D+P E + PD+ L
Sbjct: 255 -------SLEKVVEAIEKDSK---------KKYTLPEDWPYKDARELFFNPDVRQADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL F + G+S++RV
Sbjct: 299 CDFKWEKPDMEGLVTFLVTEKGFSEDRV 326
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+P+I+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVL 166
>gi|255541446|ref|XP_002511787.1| DNA binding protein, putative [Ricinus communis]
gi|223548967|gb|EEF50456.1| DNA binding protein, putative [Ricinus communis]
Length = 609
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 305 ELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDI 364
E G +R + + E ELL+LFG+P + A GEAEA CA L IT DSD
Sbjct: 105 EEGVSVERNGAFLKCVKECVELLELFGMPVLKANGEAEALCAQLNSQGLVDACITADSDA 164
Query: 365 WLFGARTVYKNFF-DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGP 422
+LFGA+ V K+ + K Y DI L R+ LI +ALLVG+D+ G+QG+G
Sbjct: 165 FLFGAKCVIKSIKPNSKEPFECYQMSDIESGLALKRKHLIAIALLVGNDHDLNGVQGIGV 224
Query: 423 VTALEILAKF 432
TAL + F
Sbjct: 225 DTALRFVQTF 234
>gi|449454486|ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449472478|ref|XP_004153607.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449516535|ref|XP_004165302.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
Length = 606
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF-DKK 380
E ELL+LFGVP + A GEAEA CA L IT DSD +LFGA+ V K+F + K
Sbjct: 122 ECVELLELFGVPVLEAKGEAEALCAELNQKGFVDACITADSDAFLFGAKCVIKSFNPNSK 181
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALEILAKFSPSDSPN 439
+ Y DI R LI ++LLVG+D+ G+QGVG TA+ + ++ + N
Sbjct: 182 EPLECYFMSDIEAALGFNRNHLIAISLLVGNDHDLNGVQGVGLDTAVCFVQDYTDDEILN 241
Query: 440 QNY 442
+ Y
Sbjct: 242 KLY 244
>gi|388854784|emb|CCF51677.1| probable DNA repair endonuclease rad2 [Ustilago hordei]
Length = 374
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P ++AP EAEAQCA L ++D D FG + K+
Sbjct: 141 EVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQ 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V + P + + I L +L+G DY ++G+GP TAL+++ + +
Sbjct: 201 KKLPVHQVDLPKALEGLGMDMAQFIDLCILLGCDYLDPIKGIGPKTALKLIREHKTLEKV 260
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+++ E AKK +V++ + +P + + P +
Sbjct: 261 VEHFKEE---------AKK------------SVQIPEHWPFQEARKIFENPHVQKGKDLD 299
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L W TPD++G+ +F G+S++RV + + K + Q+
Sbjct: 300 LKWETPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLGQK 339
>gi|307173481|gb|EFN64391.1| Flap endonuclease 1-B [Camponotus floridanus]
Length = 382
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 26/205 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LLQL G+P+I AP EAEAQCA+L T+D D FG + +
Sbjct: 140 EAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCDILLRRLTLSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + EL ++ I L +++G DYT ++GVGP A+E++ + D
Sbjct: 200 RKLPVQEIHMDKVLTGLELNHDEFIDLCIMLGCDYTGSIKGVGPKRAIELIKNYRSLDKI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+N + +NW + +L P V+ E DI +L
Sbjct: 260 IENIDTKKYPIPENW-------------NYKEARLLFQEPEVANAE-----DI-----QL 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRV 523
W PD +GL +F + +++ RV
Sbjct: 297 KWSEPDEEGLVKFLCSDKQFNEERV 321
>gi|302900157|ref|XP_003048206.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|317374915|sp|C7Z125.1|FEN1_NECH7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256729138|gb|EEU42493.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 395
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+I+AP EAEAQCA L ++D D F + + ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYAAASEDMDTLCFNSPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 200 RKEPIQEIHLEKVLEGLGMERKQFVDLCILLGCDYLDPIPKVGPTTALKLI-----RDHG 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ IVE+M + + L +D+P + + +PD+
Sbjct: 255 SLEKIVEAMEKDPK----------------KKYVLPEDWPYKDARDLFFEPDVRKADDPE 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ W PD++GL +F + G+S++RV
Sbjct: 299 CDVKWEKPDMEGLVQFLVTEKGFSEDRV 326
>gi|110430659|gb|ABG73449.1| DNA repair protein [Oryza brachyantha]
Length = 629
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 312 RRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
R +R + E ELL+ G+P + A GE EA CA L H IT DSD +LFGA+T
Sbjct: 120 RNAKFTRYVKECVELLEYLGMPVLRAKGEGEALCAQLNNEGHVDACITSDSDAFLFGAKT 179
Query: 372 VYKNF-FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALEIL 429
V K + K Y DI L R++++ +ALLVGSD+ G+ G GP TAL +
Sbjct: 180 VIKVLRSNCKEPFECYNMTDIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFV 239
Query: 430 AKF 432
F
Sbjct: 240 QLF 242
>gi|71031676|ref|XP_765480.1| flap endonuclease 1 [Theileria parva strain Muguga]
gi|122052062|sp|Q4N3S6.1|FEN1_THEPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|68352436|gb|EAN33197.1| flap endonuclease 1, putative [Theileria parva]
Length = 494
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 33/224 (14%)
Query: 312 RRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 370
R VS++M E A++LL+L GVP I A EAEAQCA L N + V ++D+D +FG
Sbjct: 131 RTVKVSKEMNESAKKLLRLMGVPVIEALEEAEAQCAYLVTKNLCRFVASEDTDTLVFGGA 190
Query: 371 TVYKNFFDKKS-HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ +N S +L+ + E ++ I +L G DY L+GVGP TA ++
Sbjct: 191 FLLRNVASSSSKKILKVDLQKVLDGLEFNFDQFIDFCILCGCDYCDTLEGVGPKTAYSLV 250
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
K+ QN +E + FK DDF E +L P
Sbjct: 251 KKY-------QN--LEEIVNFKGGDY-------------------DDFKEAK--EYFLSP 280
Query: 490 DINT-NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+N + + GT D +GL F + +S+ RV++ + ++K
Sbjct: 281 KVNEYDENSVKLGTIDPEGLTEFLVQENNFSKERVEKFIEKLLK 324
>gi|312385968|gb|EFR30352.1| hypothetical protein AND_00127 [Anopheles darlingi]
Length = 385
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + ++
Sbjct: 140 EAKELLRLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSNILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + + FELT ++ I + +L+G DY ++G+GP A+E++ K +
Sbjct: 200 RKMPVQEFHYEKVLKGFELTADEFIDMCILLGCDYCDTIRGIGPKKAIELINKHRSIEQ- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E + + K + P+ ++ R + + + + IE L
Sbjct: 259 ----ILEHLDKSKYVV-----PEDWNYQQARRLFKEPEVADAAEIE-------------L 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
W PD +GL ++ ++++R+ I+K
Sbjct: 297 KWSEPDEEGLVKYLCGDRQFNEDRIRAGAKKILK 330
>gi|254567327|ref|XP_002490774.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|317376166|sp|C4QZ20.1|FEN1_PICPG RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238030570|emb|CAY68494.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|328351158|emb|CCA37558.1| flap endonuclease-1 [Komagataella pastoris CBS 7435]
Length = 373
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 25/206 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LL+L G+P++ AP EAEAQCA L G ++D D + + ++ ++
Sbjct: 141 QAKKLLELMGIPYVDAPCEAEAQCAELAKGGKVYAAASEDMDTLCYETPYLLRHMTTAEA 200
Query: 382 HVLRYTAPD---IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L T D + E+ + I L +L+G DY ++GVGPVTA +++ + +
Sbjct: 201 RKLPVTEIDYAKVMEGLEMELPQFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSIEK- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+VE++ +N P + K+ +++P E +L P+ I + +
Sbjct: 260 ----VVEAI---------ENNPKS-------KQKIPENWPYNEARELFLHPEVIPASECE 299
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD + L + + G+S+ R+
Sbjct: 300 LEWKEPDEEALVDYMVRQHGFSEQRI 325
>gi|17510005|ref|NP_491168.1| Protein CRN-1 [Caenorhabditis elegans]
gi|75023012|sp|Q9N3T2.1|FEN1_CAEEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
gi|31747251|gb|AAP57297.1| cell death-related nuclease 1 [Caenorhabditis elegans]
gi|373220153|emb|CCD72553.1| Protein CRN-1 [Caenorhabditis elegans]
Length = 382
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 30/221 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ LL L G+P + AP EAEAQCA L G +T+D D FG+ + ++F
Sbjct: 140 EAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMDALTFGSTVLLRHFLAPVA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +L+ E+ I L +L+G DY ++GVGP A+E++
Sbjct: 200 KKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELI--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
Q+ +E++ +N K P +D+P E +L P++ + +
Sbjct: 251 RQHKNIETI--LENIDQNKYPPP-------------EDWPYKRARELFLNPEVTKPEEVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
L W D++G+ +F + +++ R+ L + K S++S
Sbjct: 296 LTWKEADVEGVIQFLCGEKNFNEERIRNALAKL--KTSRKS 334
>gi|315055715|ref|XP_003177232.1| hypothetical protein MGYG_01313 [Arthroderma gypseum CBS 118893]
gi|311339078|gb|EFQ98280.1| hypothetical protein MGYG_01313 [Arthroderma gypseum CBS 118893]
Length = 765
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 40/247 (16%)
Query: 309 DKKRRPYVSRKMLEAQ-----ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
D KR VS+ AQ +L++LF P VAPGEAEA+CA L+ V+++D D
Sbjct: 85 DYKRGRLVSKNAAAAQIDLSRKLIELFSYPCHVAPGEAEAECAKLQRTGVVDAVMSNDVD 144
Query: 364 IWLFGARTVYKNF-------FDKKSHVLRYT--APDIRYYFELTREKLIQLALLVGSDYT 414
+FG++ N+ +HV Y A D L ++ +ALL G DY+
Sbjct: 145 ALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVALDTRGMVLVALLSGGDYS 204
Query: 415 P-GLQGVGPVTALEIL-AKFSP-------------SDSPNQNYIVESMRRFKNWLAKKNK 459
P G+ GP A+EI A F S + + E R + L + N+
Sbjct: 205 PAGVALCGPKLAVEIARAGFGEDLLAITRDMLSGRSTKQAEEALCEWRERLQYEL-ETNE 263
Query: 460 PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL-------AWGTP-DLDGLRRF 511
TR + V++ DDFPN++V+ + + P + ++ +KL WG D+D LR F
Sbjct: 264 SGYFKTRH-KAVRIPDDFPNMAVLRSCVNP-LTSSPEKLDAFRRSEIWGRRIDIDRLRGF 321
Query: 512 AANKFGW 518
GW
Sbjct: 322 VGRHLGW 328
>gi|75288736|sp|Q64MA3.1|GENL1_ORYSJ RecName: Full=Flap endonuclease GEN-like 1; Short=OsGEN-L;
Short=Protein OsGEN-like; AltName: Full=OsRAD
gi|52075592|dbj|BAD46702.1| putative single-strand DNA endonuclease-1 [Oryza sativa Japonica
Group]
gi|62122402|dbj|BAD93194.1| putative nuclease [Oryza sativa Japonica Group]
gi|62122736|dbj|BAD93331.1| putative nuclease [Oryza sativa Japonica Group]
gi|215693373|dbj|BAG88755.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630495|gb|EEE62627.1| hypothetical protein OsJ_17430 [Oryza sativa Japonica Group]
Length = 629
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
EAEA +L + R +R + + ELL+ G+P + A GE EA CA L H
Sbjct: 108 EAEASADALV----QPRNAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVD 163
Query: 356 GVITDDSDIWLFGARTVYKNF-FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414
IT DSD +LFGA+TV K + K Y DI L R++++ +ALLVGSD+
Sbjct: 164 ACITSDSDAFLFGAKTVIKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHD 223
Query: 415 -PGLQGVGPVTALEILAKF 432
G+ G GP TAL + F
Sbjct: 224 LHGVPGFGPETALRFVQLF 242
>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
gi|28380024|sp|Q9V0P9.1|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
gi|380741502|tpe|CCE70136.1| TPA: flap endonuclease-1 [Pyrococcus abyssi GE5]
Length = 343
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 54/230 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LLQL G+P + AP E EAQ A + + D D LFG + +N +
Sbjct: 134 DAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNL----T 189
Query: 382 HVLRYTAPDIRYYFEL----------------TREKLIQLALLVGSDYTPG-LQGVGPVT 424
+ P Y E+ TREKLI+LA+LVG+DY PG ++G+GP
Sbjct: 190 ITGKRKMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
ALEI+ K+S K+ LAK + D ++ E
Sbjct: 250 ALEIV-KYS-----------------KDPLAKFQR--------------QSDVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+L P T+ L W PD +G+ RF ++ +S+ RV L + K I
Sbjct: 278 FFLNPP-TTDDYSLKWKEPDEEGIIRFLCDEHDFSEERVKNGLERLKKAI 326
>gi|378733116|gb|EHY59575.1| flap endonuclease 1 [Exophiala dermatitidis NIH/UT8656]
Length = 395
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E + LL+L G+P+I+AP EAEAQCA L ++D D F A + ++ F ++
Sbjct: 140 ECRRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + R + I L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPIQEIHLDKTLEGLGMDRTQFIDLCILLGCDYVDPIPKVGPNTALKLIREHGTLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+VE + +N P + L +D+P E +L PD+ +
Sbjct: 259 ----VVEFI---------ENDPK-------KRYSLPEDWPYKDARELFLHPDVRSADDPE 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
W PD++GL +F N+ G++++RV + K +
Sbjct: 299 CDFKWEAPDVEGLVQFLVNEKGFNEDRVRNAAQKLQKNV 337
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E + LL+L G+P+I+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNEECRRLLKLMGIPYIIAPTEAEAQCAVL 166
>gi|389634309|ref|XP_003714807.1| flap structure-specific endonuclease [Magnaporthe oryzae 70-15]
gi|351647140|gb|EHA55000.1| flap structure-specific endonuclease [Magnaporthe oryzae 70-15]
gi|440465671|gb|ELQ34981.1| flap structure-specific endonuclease [Magnaporthe oryzae Y34]
gi|440490374|gb|ELQ69936.1| flap structure-specific endonuclease [Magnaporthe oryzae P131]
Length = 932
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 29/221 (13%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD---- 378
A+ +++LFG F APGEAEA+CA L+ V+++D D +FG +N+
Sbjct: 108 AKRMIRLFGFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFGCTRTLRNWSSEGVR 167
Query: 379 ---KKSHVLRYTAPDIRY-YFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI----- 428
+ +HV Y + I+ + L RE ++ +AL+ G DY P G+ G G A E
Sbjct: 168 GSKEPTHVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVACEAARGGF 227
Query: 429 ---LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
L + SDS + + E + L + NK R R + + DDFP++ V+
Sbjct: 228 GHSLCRIKKSDS---SALAEWKEKLLAEL-RDNKSGFFRVRH-RALVIPDDFPSIEVLRY 282
Query: 486 YLKPDINTN--VQKLAWGTP-----DLDGLRRFAANKFGWS 519
Y P ++ + ++ L P D+ GLR+F A F W+
Sbjct: 283 YTHPVVSQDETLEHLENSFPSNNSLDVQGLRQFVAETFDWT 323
>gi|342882941|gb|EGU83505.1| hypothetical protein FOXB_05915 [Fusarium oxysporum Fo5176]
Length = 395
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+I+AP EAEAQCA L ++D D F A + ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYAAASEDMDTLCFNAPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ + L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPIQEIHLEKVLEGLNMERKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ + P T + +D+P + + +PD+ + +
Sbjct: 259 ----VVEAIEK---------DPKKKYT-------IPEDWPYKDARDLFFEPDVRQADHHD 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + G+S++RV
Sbjct: 299 CDFKWEKPDMEGLVQFLVTEKGFSEDRV 326
>gi|358054307|dbj|GAA99233.1| hypothetical protein E5Q_05927 [Mixia osmundae IAM 14324]
Length = 389
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+PFI+AP EAEAQCA L G G ++D D F + + ++
Sbjct: 141 ECQRLLKLMGIPFIIAPSEAEAQCAELCRGGLVYGTGSEDMDTLTFSSPIILRHLTFSEQ 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + ++ ELT ++ I + +L G DY L +G TAL+++ D
Sbjct: 201 RKLPIDVIELSEVLKGMELTMDEFIDMCILSGCDYVDPLPKIGAKTALKLI-----KDHG 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+ + +VE++ K+ P +D+P E + PD+
Sbjct: 256 DLDAVVEAL---------KDTPRAA----------PEDWPYREARELFKHPDVLKAEEVD 296
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD++GL F G++++RV
Sbjct: 297 LKWEDPDIEGLVDFLVRDKGFNEDRV 322
>gi|440795563|gb|ELR16683.1| hypothetical protein ACA1_089310 [Acanthamoeba castellanii str.
Neff]
Length = 343
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 30/212 (14%)
Query: 322 EAQELLQLFGVPFIVAP--GEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF-- 377
E ++LL L G+P + AP GEAEAQCA L V ++D D FGA + ++
Sbjct: 121 ECKKLLGLMGMPVVQAPAGGEAEAQCAELCRAGKVFAVGSEDMDALTFGAPVLLRHLTFS 180
Query: 378 -DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+K ++ P + LT E+ I L +L G DY ++GVGP AL ++
Sbjct: 181 EARKLPIVEIELPKVLEGLGLTMEQFIDLCILAGCDYCDTIRGVGPKRALALI------- 233
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNV 495
Q+ VE + KN KN L D FP + E + P+ I +
Sbjct: 234 --KQHGSVEQV--IKNLDKAKN-------------PLPDQFPFEATRELFKHPNVIPGDE 276
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L WG+PD +GL + + G+++ RV + +
Sbjct: 277 VELQWGSPDEEGLLEYLVAEKGFNEERVRKGI 308
>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
gi|254788674|sp|B8GIA0.1|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
Length = 333
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 43/226 (19%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKKS 381
++ELL L GVP + AP E EAQ AS+ ++ D D LFGA + +N K
Sbjct: 136 SKELLTLMGVPCVQAPSEGEAQAASMAASGAVTYAVSQDYDSLLFGAPLLVRNLTVSSKR 195
Query: 382 HVLRYTAP---------DIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
V T ++ +TRE+LI+ +L+G+D+ PG++GVGP TAL+I+ K
Sbjct: 196 RVQGRTIAVQPESIRLDEVLGGLGITREQLIEAGILIGTDFNPGIRGVGPKTALKIVKKD 255
Query: 433 SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
F + +A+K DF +++ + P +
Sbjct: 256 G----------------FADMIAEKLP----------------DFDPSPILQFFRSPPVI 283
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
N+ L W PD G+ ++G++ RV L I Q++
Sbjct: 284 ANL-SLDWQPPDQAGIEDLLCGEYGFATERVRTALQKISGPPGQKT 328
>gi|407851500|gb|EKG05394.1| hypothetical protein TCSYLVIO_003532 [Trypanosoma cruzi]
Length = 393
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ LE A++LLQL G+P + AP EAEAQCA L N V T+D D FGA
Sbjct: 132 KRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVATEDMDALTFGA 191
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ KK + + +I LT + I L +L+G DY P + G+GP A
Sbjct: 192 PVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVPKISGIGPQKAW 251
Query: 427 EILAK 431
E + K
Sbjct: 252 EGIKK 256
>gi|315047298|ref|XP_003173024.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
gi|311343410|gb|EFR02613.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
Length = 459
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEAQCA L G ++D D F A + ++
Sbjct: 204 ECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQ 263
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + + + L +L+G DY + VGP TAL+++ D
Sbjct: 264 RKEPILEIHLEKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 318
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE+MR RN P + E + PD+ +
Sbjct: 319 TLEKVVEAMR----------------ATPRRNTSSRTTGPYLQARELFFNPDVRPADAPE 362
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD+DGL RF + G+S+ RV
Sbjct: 363 CDFKWTAPDVDGLVRFLVEEKGFSEERV 390
>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
gi|317374883|sp|A8J2Z9.1|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
Length = 396
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 29/207 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E + LL+L GVP + AP EAEAQCA + G+ T+D D FGA V ++ S
Sbjct: 141 ECKRLLRLMGVPVVEAPTEAEAQCAEMAKSGLVYGLATEDMDALTFGAPRVIRHLMAPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V + ELT ++ I L +L+G DY ++G+G V AL+++ K
Sbjct: 201 QNVPVQEFDREVALRELELTDDQFIDLCILMGCDYCGTIRGIGAVRALQMIKKHGS---- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI--NTNVQ 496
+E M K+ P + + + FP+ E + P++ + +
Sbjct: 257 -----IEGM-------LKELDPAKY--------PVPEPFPHKESHEFFKNPEVTPSAEIP 296
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL +F N+ +++ RV
Sbjct: 297 PLKWTAPDEEGLVQFLVNEKQFNEQRV 323
>gi|125564417|gb|EAZ09797.1| hypothetical protein OsI_32084 [Oryza sativa Indica Group]
Length = 630
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 312 RRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
R +R + + ELL+ G+P + A GE EA CA L H IT DSD +LFGA+T
Sbjct: 120 RNAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKT 179
Query: 372 VYKNF-FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALEIL 429
V K + K Y DI L R++++ +ALLVGSD+ G+ G GP TAL +
Sbjct: 180 VIKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFV 239
Query: 430 AKF 432
F
Sbjct: 240 QLF 242
>gi|413932542|gb|AFW67093.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 294
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + APGEAEAQCA+L + V ++D D FGAR ++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDTLTFGARRFLRHLTDLGY 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KKS V + + LT ++ I L +L G DY ++G+G AL+++ + +
Sbjct: 201 KKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGCIEEV 260
Query: 439 NQNYIVESMRRFKNWLAKKNKP 460
QN RF L + P
Sbjct: 261 LQNLNQTRNSRFHVDLTRSRGP 282
>gi|340966641|gb|EGS22148.1| hypothetical protein CTHT_0016650 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 395
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+P+I+AP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 ECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFAEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + L +L+G DY + +GP TAL+++ + +
Sbjct: 200 RKEPIQEIHTDKVLEGLNMDRKQFVDLCILLGCDYLDPIPKIGPSTALKLIREHGSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+VE + +N P T + +D+P E + PD+
Sbjct: 259 ----VVEFI---------QNDPKKRYT-------IPEDWPYQDARELFFNPDVRQADDPE 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + G+S++RV
Sbjct: 299 CDFKWEKPDVEGLVQFLVKEKGFSEDRV 326
>gi|410074109|ref|XP_003954637.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
gi|372461219|emb|CCF55502.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
Length = 379
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAKKLLELMGIPYVNAPCEAEAQCAELAKVGKVYAAASEDMDTLCYRTPYLVRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ I L +++G DY ++GVGPVTAL+++ + +
Sbjct: 198 KKEPIQEINTEIVLQSMDLTLEQFIDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEK- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
IVE + + DT K+ +++P E +LKPD IN N
Sbjct: 257 ----IVEYI----------DSGDTKT-----KWKIPENWPYKEARELFLKPDVINGNDIT 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L + G+S+ RV
Sbjct: 298 LKWNPPKEQELIDYLCKDKGFSEERV 323
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 258 LLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL------------E 305
+ E+ K R ++++ + EA++LL+L G+P++ AP EAEAQCA L +
Sbjct: 118 IAEKIKHERRLVKVSKEHNDEAKKLLELMGIPYVNAPCEAEAQCAELAKVGKVYAAASED 177
Query: 306 LGTDKKRRPYVSRKM 320
+ T R PY+ R +
Sbjct: 178 MDTLCYRTPYLVRHL 192
>gi|327306185|ref|XP_003237784.1| flap endonuclease [Trichophyton rubrum CBS 118892]
gi|326460782|gb|EGD86235.1| flap endonuclease [Trichophyton rubrum CBS 118892]
Length = 447
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P++ AP EAEAQCA L G ++D D F A + ++
Sbjct: 192 ECKRLLELMGIPYLDAPTEAEAQCAVLARAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQ 251
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + + + L +L+G DY + VGP TAL+++ D
Sbjct: 252 RKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMI-----RDHG 306
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ ++ P + + DD+P + E + PD+ +
Sbjct: 307 TLEKVVEAI---------ESDPK-------KKYVIPDDWPYLQARELFFNPDVRPADAPE 350
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL RF + G+S++RV
Sbjct: 351 CDFKWSAPDVEGLVRFLVEEKGFSEDRV 378
>gi|222445719|ref|ZP_03608234.1| hypothetical protein METSMIALI_01361 [Methanobrevibacter smithii
DSM 2375]
gi|222435284|gb|EEE42449.1| XPG I-region [Methanobrevibacter smithii DSM 2375]
Length = 187
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 45/206 (21%)
Query: 329 LFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTA 388
+ G+P+I A GE EAQ A L V + D D LFGA+ V +N +
Sbjct: 1 MMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNL------AINSNL 54
Query: 389 PDIRYY--------FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
++ YY ++ RE+LI + +L+G+D++ GL+GVG TAL++ K
Sbjct: 55 GNLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAKK--------- 105
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
+N LAK + +H ++R E +L ++NT+ K+ W
Sbjct: 106 -------GELENKLAKLQEKSSHDISEVR--------------EIFLNHNVNTDY-KIRW 143
Query: 501 GTPDLDGLRRFAANKFGWSQNRVDQT 526
P + + F + G+SQ+RV +
Sbjct: 144 KKPAKNDIIDFLCEEHGFSQDRVSKA 169
>gi|126179869|ref|YP_001047834.1| flap endonuclease-1 [Methanoculleus marisnigri JR1]
gi|166973702|sp|A3CWV2.1|FEN_METMJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|125862663|gb|ABN57852.1| flap endonuclease 1 [Methanoculleus marisnigri JR1]
Length = 333
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 43/232 (18%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 376
S + ++ELL L G+P++ AP E EAQ A + ++ D D LFG+ + +N
Sbjct: 130 SHTIASSRELLDLLGIPWVQAPSEGEAQAAYMARQGKVTYAVSQDYDSLLFGSPVLVRNL 189
Query: 377 F---DKKSHVLRYTAPDIRYYFE-------LTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+K+ T R +TRE+L+++ +LVG+D+ PG++GVG TAL
Sbjct: 190 TVSGRRKTRGRTITVNPERIVLSSFLDRLGVTREQLVKIGILVGTDFNPGIRGVGGKTAL 249
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+I+ F++ +A+K DF + + +
Sbjct: 250 KIVRN----------------GEFESVIAEKQP----------------DFNPAPIRDFF 277
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
L P + T+ L W TPD++G+ ++ +S+ RV L + K +Q++
Sbjct: 278 LNPPV-TDDYTLEWRTPDVEGVVEMLCGRYDFSEERVRSALAKVSVKATQKT 328
>gi|401841744|gb|EJT44085.1| RAD27-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 380
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EAQ+LL L GVP+I+AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAQKLLGLMGVPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++
Sbjct: 198 KKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLMRTHG----- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
S+ + ++ + +T K+ DD+P +L P+ I+ N
Sbjct: 253 -------SIEKIIEFIESEESSNTKW-------KIPDDWPYKQARMLFLDPEVIDGNEID 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L + N+ +S+ RV
Sbjct: 299 LKWSPPKEKELIEYLCNEKKFSEERV 324
>gi|365989632|ref|XP_003671646.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
gi|343770419|emb|CCD26403.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
Length = 384
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ APGEAEAQCA L ++D D + + ++
Sbjct: 138 EAKKLLELMGIPYVNAPGEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + ELT E+ I L +++G DY ++G+GPVTA +++ + +
Sbjct: 198 KKEPIQEINTEQVLQGLELTLEQFIDLGIMLGCDYCENIRGIGPVTAFKLIKEHGSLEK- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
I+E + + D + +K K+ +++P E ++ PD I+ N
Sbjct: 257 ----IIEFI-----------ESDENTNKKW---KVPENWPYKEARELFVTPDIIDGNQIT 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P D L F + +++ RV
Sbjct: 299 LKWEPPKEDALIEFLCKEKLFNEERV 324
>gi|310800740|gb|EFQ35633.1| XPG domain-containing protein [Glomerella graminicola M1.001]
Length = 394
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
+ Q+LL+L G+P+IVAP EAEAQCA L ++D D F + ++ F +
Sbjct: 140 DCQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEA 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + +L+G DY + +GP TAL+++ + ++
Sbjct: 200 RKEPIQEVHIDKVLAGLGMERKQFVDFCILLGCDYLDPIPKIGPSTALKLIREHGDLET- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE+ KN P + DD+P E +L PD+ L
Sbjct: 259 ----LVEAF---------KNDPKQKYV-------VPDDWPYQDARELFLNPDVRPADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD+DGL ++ + G+S++RV
Sbjct: 299 CDFKWEKPDMDGLVQYLVMEKGFSEDRV 326
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + + Q+LL+L G+P+IVAP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNADCQKLLKLMGIPYIVAPTEAEAQCAVL 166
>gi|221113045|ref|XP_002168588.1| PREDICTED: flap endonuclease GEN homolog 1-like [Hydra
magnipapillata]
Length = 299
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--KKSHVLRYTA 388
G+P+I A GEAE CA L + G +T+D D +L+G + +Y++F K V YT
Sbjct: 121 GIPYIRATGEAEQMCAFLNSKKISDGCLTNDGDFFLYGGKCIYRDFSADPKNPCVSTYTQ 180
Query: 389 PDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMR 448
I+ +TR +I +ALL G DY G+ G+G +++KF S +N +V
Sbjct: 181 EKIKDKIGITRHDMIGIALLCGCDYIKGVSGIGK----SLVSKFISEKSFKENLLV---- 232
Query: 449 RFKNWL 454
RF W
Sbjct: 233 RFHRWF 238
>gi|223477291|ref|YP_002581507.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
gi|214032517|gb|EEB73347.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
Length = 339
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 105/230 (45%), Gaps = 54/230 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LL L GVP + AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKKLLGLMGVPVVQAPSEGEAQAAYMASKKKVYASASQDYDSLLFGAPRLVRNL----T 189
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTP-GLQGVGPVT 424
R P Y E + REKLI+LA+LVG+DY P G++G+GP
Sbjct: 190 ITGRRKLPGKNVYVEVKPELIILEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL I+ +R K+ LAK +K+ +V L ++ E
Sbjct: 250 ALTIV------------------KRSKDPLAK--------YQKMSDVDL------YAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+L P + T+ +L W PD +G+ RF ++ +S+ RV L + K I
Sbjct: 278 FFLNPPV-TDDYELKWREPDEEGIIRFLCDEHDFSEERVKNGLERLKKAI 326
>gi|293334819|ref|NP_001169528.1| uncharacterized protein LOC100383402 [Zea mays]
gi|224029901|gb|ACN34026.1| unknown [Zea mays]
gi|414886336|tpg|DAA62350.1| TPA: hypothetical protein ZEAMMB73_316768 [Zea mays]
Length = 638
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
K+R +R + E ELL+ G+P + A GEAEA CA L H IT DSD +LFGA
Sbjct: 119 KRRNAAFTRCVEECVELLEYLGMPVLRAKGEAEALCAQLNNEGHVGACITADSDAFLFGA 178
Query: 370 RTVYKNF-FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALE 427
+TV K + K Y DI L R++L+ +ALL+GSD+ G+ G G TAL
Sbjct: 179 KTVVKVLRSNCKEPFECYHIADIESGLGLKRKQLVAMALLIGSDHDLHGVPGFGLETALR 238
Query: 428 ILAKF 432
+ F
Sbjct: 239 FVQLF 243
>gi|224050601|ref|XP_002192880.1| PREDICTED: flap endonuclease 1 [Taeniopygia guttata]
Length = 386
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P++ APGEAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKKLLTLMGIPYVEAPGEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASET 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I +LT E+ + L +L+G DY ++G+GP A+E++ + +
Sbjct: 200 KKLPIQEFHLNRILQDLQLTWEQFVDLCILLGCDYCASIRGIGPKRAVELIREHKSIERI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
Q + +NWL ++ +KL +L+PD I+ + +
Sbjct: 260 VQQLDTKKYPLPENWLHRE-------AQKL-----------------FLEPDVIDPDAVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD + L +F + +++ R+
Sbjct: 296 LKWSEPDEEQLVQFMCGEKQFNEERI 321
>gi|242219226|ref|XP_002475395.1| predicted protein [Postia placenta Mad-698-R]
gi|220725414|gb|EED79402.1| predicted protein [Postia placenta Mad-698-R]
Length = 567
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 118/258 (45%), Gaps = 47/258 (18%)
Query: 309 DKKRRPYVSR--KMLEA---------QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGV 357
D + RP V R K+ +A ++LL +G+ + +A GEAEA+ A L +
Sbjct: 84 DGRERPKVKRGSKLGKAGSHNLTARVKQLLDCYGIEWRMARGEAEAELACLNRAGVIDAI 143
Query: 358 ITDDSDIWLFGARTVYK---------------NFFDKKS--HVLRYTAPDIRYY--FELT 398
+TDD D +FGARTV K N+ K S HV+ ++A +R + ++T
Sbjct: 144 LTDDVDTLVFGARTVIKNPSLSLTGNKANPAQNYEGKTSKYHVMVFSAEALRNHPEVQMT 203
Query: 399 REKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKN----WL 454
R L+ ALL G DY GL GP A LA+ D + Y +S R + W
Sbjct: 204 RGGLVLFALLSGGDYDKGLNHFGPQIA-HGLARLGFGDRLLEAYERQSGRNMTHFLSQWR 262
Query: 455 AKKN-KPDTHLTRKLR----NVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDG-- 507
A+ N + T+ + LR ++ + +DFP++ V+ Y+ P + +V G +G
Sbjct: 263 AEINVELHTNAHKLLRCPYPSLSIPEDFPDMDVLRNYINPVCSASVGHQGGGALRDNGDL 322
Query: 508 ----LRRFAANKFG-WSQ 520
L F + FG W
Sbjct: 323 SIPRLAAFCEDHFGEWGH 340
>gi|19173066|ref|NP_597617.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
gi|74621278|sp|Q8SS91.1|FEN1_ENCCU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19168733|emb|CAD26252.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 309 DKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
DK++ + E + LL L G+PF AP EAEA CA L GV T+D D FG
Sbjct: 126 DKRKTKVTGVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATEDMDALTFG 185
Query: 369 ARTVYKNFFDKKSH---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ V +NF +S V+ + P I L + I L +L+G DY L+G+GP A
Sbjct: 186 SPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCILLGCDYCSTLKGIGPKKA 245
Query: 426 LEILAK 431
L ++ K
Sbjct: 246 LGLIKK 251
>gi|395545349|ref|XP_003774565.1| PREDICTED: flap endonuclease 1 [Sarcophilus harrisii]
Length = 380
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKRLLRLMGIPYLEAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + LT+E+ + L +L+GSDY ++G+GP A++++ +
Sbjct: 200 KKLPIQEFHLSRVLQGLGLTQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQQ------- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
I E +RR K PD L ++ + + +L+P++ + +
Sbjct: 253 -HKSIEEILRRLDP--KKYPVPDNWLHKEAQRL--------------FLEPEVLDAEAVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL F + ++++RV
Sbjct: 296 LKWSEPDEEGLVEFMCGEKQFNEDRV 321
>gi|449329677|gb|AGE95947.1| structure-specific endonuclease of the XPG/RAD2 family
[Encephalitozoon cuniculi]
Length = 345
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 309 DKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
DK++ + E + LL L G+PF AP EAEA CA L GV T+D D FG
Sbjct: 126 DKRKTKVTGVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATEDMDALTFG 185
Query: 369 ARTVYKNFFDKKSH---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ V +NF +S V+ + P I L + I L +L+G DY L+G+GP A
Sbjct: 186 SPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCILLGCDYCSTLKGIGPKKA 245
Query: 426 LEILAK 431
L ++ K
Sbjct: 246 LGLIKK 251
>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
gi|317374888|sp|B3MDA3.1|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
Length = 388
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + + + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYEKLLDGLGVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW + + R+L +++P++ N + +
Sbjct: 260 LDNLDTSKYTVPENW-------NYKIAREL-----------------FIEPEVANADAIE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL +F ++++RV
Sbjct: 296 LKWTEPDEEGLVKFLCGDRQFNEDRV 321
>gi|322708426|gb|EFZ00004.1| DNA-repair protein rad2 [Metarhizium anisopliae ARSEF 23]
Length = 395
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E Q LL+L G+PFI+AP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 ECQRLLKLMGIPFIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R + + L +L+G DY + VGP TAL+++ +
Sbjct: 200 RKEPIQEIHLDKVLEGLNMERSQFVDLCILLGCDYLDPVPKVGPTTALKLIREHG----- 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
++ + + K +K + L +D+P + + +PD+ L
Sbjct: 255 -------TLENVVDAIEKDSK---------KKYTLPEDWPYKDARDLFFEPDVRKADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL F + G+S++RV
Sbjct: 299 CDFKWDKPDVEGLVTFLVTEKGFSEDRV 326
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E Q LL+L G+PFI+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAECQRLLKLMGIPFIIAPTEAEAQCAVL 166
>gi|380479712|emb|CCF42855.1| XPG domain-containing protein [Colletotrichum higginsianum]
Length = 394
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
+ Q+LL+L G+PFIVAP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 DCQKLLKLMGIPFIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + +L+G DY + VGP TAL+++ + ++
Sbjct: 200 RKEPIQEVHIDKVLEGLGMERKQFVDFCILLGCDYLDPIPKVGPSTALKLIREHGDLET- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE+ KN P + +D+P E +L PD+ L
Sbjct: 259 ----LVEAF---------KNDPKQKYV-------IPEDWPYQDARELFLNPDVRPADDPL 298
Query: 499 A---WGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL ++ + G+S++RV
Sbjct: 299 CDFKWEKPDMEGLVQYLVTEKGFSEDRV 326
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + + Q+LL+L G+PFIVAP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNADCQKLLKLMGIPFIVAPTEAEAQCAVL 166
>gi|317374918|sp|C1BM18.1|FEN1_OSMMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|225708450|gb|ACO10071.1| Flap endonuclease 1-B [Osmerus mordax]
Length = 380
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 37/246 (15%)
Query: 297 AEAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNH 353
A+AQ A + DK KR V+R+ E ++LL L GVP++ AP EAEA CA+L
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTRQHNDECKKLLTLMGVPYVEAPCEAEASCAALVKAGK 171
Query: 354 TQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFE-------LTREKLIQLA 406
T+D D FG + ++ ++ L P ++F L+ E+ I L
Sbjct: 172 VFATATEDMDGLTFGTGVLLRHLTASEAKKL----PIQEFHFSRILQDIGLSHEQFIDLC 227
Query: 407 LLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTR 466
+L+G DY ++G+GP A++++ + + I++++ L+K P+ L +
Sbjct: 228 ILLGCDYCGTIKGIGPKRAMDLIRQHGSIEE-----ILDNID-----LSKHPVPEDWLYK 277
Query: 467 KLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQT 526
+ R + L D + S +E L W PD +GL +F + +S++R+
Sbjct: 278 EARGLFLTPDVVDCSCLE-------------LKWSEPDEEGLVQFMCAEKQFSEDRMRNG 324
Query: 527 LIPIMK 532
I+K
Sbjct: 325 CKKILK 330
>gi|347968324|ref|XP_312255.5| AGAP002669-PA [Anopheles gambiae str. PEST]
gi|333468059|gb|EAA08023.5| AGAP002669-PA [Anopheles gambiae str. PEST]
Length = 733
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 116/271 (42%), Gaps = 46/271 (16%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
T++KR + + + +ELL G+ + APGEAEA CA L N GVI+ DSD + +
Sbjct: 109 TEQKRNRF-HHVLKQCEELLSAMGLVCVQAPGEAEALCAYLNRDNLIYGVISQDSDCFAY 167
Query: 368 GARTVYKNFFDKKS--HVLRYTAPDIR-YYFELTREKLIQLALLVGSDYTP-GLQGVG-- 421
GA V++NF ++ V Y + +L +EK++ +ALL G DY P G+ GVG
Sbjct: 168 GAVRVFRNFCASQNGGSVEIYDLTRVNASVLQLGQEKIVAMALLSGCDYCPAGVMGVGRE 227
Query: 422 --------------------------PVTALEILAKFSPSDSPNQNYIVESMRRFKNWLA 455
+T LEI A+ S + + R L
Sbjct: 228 LVTRFISCYENGEILPKIRSWRKTADRLTELEIRAEDKNICSECGHVGKQLQHRRAGCLD 287
Query: 456 KKNKPDTHLTR------------KLRNVKLND-DFPNVSVIEAYLKPDINTNVQKLAWGT 502
+ KP + TR +++ L D +FP+ +IE +L L+W
Sbjct: 288 CRMKPGCNETRWKQQRCNIRTELEIKRKALKDPEFPHEPIIEEFLTRPCELPALDLSWRQ 347
Query: 503 PDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
P+L R + W++ Q L+P+ +
Sbjct: 348 PNLVKFIRSMSTYLQWNELYCFQKLLPLFTR 378
>gi|49619155|gb|AAT68162.1| flap structure specific endonuclease 1 [Danio rerio]
Length = 380
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 33/244 (13%)
Query: 297 AEAQCASLELGTDK--KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNH 353
A+AQ A + DK KR V+++ E ++LL L GVP+I AP EAEA CA+L
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 354 TQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVG 410
T+D FG + ++ KK + + I ELT ++ I L +L+G
Sbjct: 172 VYATATEDMAGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLG 231
Query: 411 SDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRN 470
DY ++G+GP A++++ + + +N R ++WL K+ R L
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHRAPEDWLYKE-------ARGL-- 282
Query: 471 VKLNDDFPNVSVIEAYLKPDI--NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLI 528
+L+P++ T+V L W PD DGL +F + +S++R+
Sbjct: 283 ---------------FLEPEVVDGTSVD-LKWNEPDEDGLIQFMCAEKQFSEDRIRNGCK 326
Query: 529 PIMK 532
I K
Sbjct: 327 KITK 330
>gi|392591810|gb|EIW81137.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 437
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 15/212 (7%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P IVAP EAEAQCA L G ++D D F A + ++
Sbjct: 172 ECRRLLRLMGIPVIVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFHAPVLLRHLTFSEA 231
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK+ + E+ + I L +L+G DY ++GVGP +AL+++ ++
Sbjct: 232 KKAPISEIHLERALQGLEMDMSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYG----- 286
Query: 439 NQNYIVESMR------RFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI- 491
+VE +R A + +K +++ +++P + + KPD+
Sbjct: 287 GLKGVVEHLREKQAEKAEAAAAAAEEDGKDGKKKKSGGIQVPEEWPWEEAKKLFEKPDVL 346
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ +L W PD+DGL RF + G+++ RV
Sbjct: 347 PADEVELEWKDPDVDGLVRFLVTEKGFNEERV 378
>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
gi|317376198|sp|B3RVF0.1|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
Length = 377
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP + AP EAE+QCA+L T+D D FG+ + ++
Sbjct: 140 EGKKLLKLMGVPVVQAPCEAESQCAALVKAGKVYATGTEDMDALTFGSNVMLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + + E+ I L +L+G DY ++GVGP A+ ++ K+ +
Sbjct: 200 RKMPIQEFHLKNALQELNFSMEQFIDLCILLGCDYCDSIKGVGPKRAVGLIEKYKSIEDI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N E +NW P +L PD+ +
Sbjct: 260 VKNISSEKFTVPENW------------------------PYKDARMLFLNPDVEKCEDME 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD D L +F + G+S++R+ + + I K
Sbjct: 296 LKWTEPDADELVKFLVEEKGFSEDRIRRGVEKISK 330
>gi|407414008|gb|EKF35678.1| hypothetical protein MOQ_002324 [Trypanosoma cruzi marinkellei]
Length = 393
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ LE A++LLQL G+P + AP EAEAQCA L N V T+D D FGA
Sbjct: 132 KRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVATEDMDALTFGA 191
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ KK + + +I LT + I L +L+G DY P + G+GP A
Sbjct: 192 PVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVPKIPGIGPQKAW 251
Query: 427 EILAK 431
E + K
Sbjct: 252 EGIKK 256
>gi|297619418|ref|YP_003707523.1| flap structure-specific endonuclease [Methanococcus voltae A3]
gi|297378395|gb|ADI36550.1| flap structure-specific endonuclease [Methanococcus voltae A3]
Length = 327
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 37/216 (17%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR Y+ M L + LL L GVP + + E EAQCA + V++ D D L+GA
Sbjct: 122 KRMNYLDTNMVLNCKRLLDLMGVPHLTSGSEGEAQCAEIVKKGDAFAVVSQDYDSLLYGA 181
Query: 370 RTVYKNFFDKKSHVLRYTA-PDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALE 427
V +N S Y D+ ++ R +LI +++L+G+DY P G++G+GP AL+
Sbjct: 182 DRVIRNITSSSSKEFEYIELKDVLDELDINRSQLIDMSILIGTDYNPKGVKGLGPKKALD 241
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
++ KN +K P+ ++R + D P V+ Y
Sbjct: 242 VV---------------------KNNQMEKYAPEIENYSEIRKIF---DEP---VLSEYK 274
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
K D L PDL G+ +F + +S++RV
Sbjct: 275 KSD-------LKLKRPDLAGIFKFLVEENDFSEDRV 303
>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
gi|317374900|sp|B0EN90.1|FEN1_ENTDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
Length = 376
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LLQL G+P + A EAE CA+L T+D D G+ V + F +
Sbjct: 141 EVKKLLQLMGIPCVEANCEAEGTCAALVKAGKCYATATEDMDALTLGSEYVVRKFSASDN 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + Y+ I + E+ I L +L+G DY ++GVGP+TA E++ ++
Sbjct: 201 KKEPIREYSLSSILEETGFSMEQFIDLCILLGCDYCDTIKGVGPITAFELIQQY------ 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+ +N L HL+ K K+ +++ E +L PD+ + + K
Sbjct: 255 ---------KSIENVL-------KHLSDKY---KVPENWKYKEARELFLHPDVADFSDYK 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
L W D +G++++ + +++ RV + +
Sbjct: 296 LEWNKLDEEGIKQYLVTEKHFNEERVTKGI 325
>gi|46138549|ref|XP_390965.1| hypothetical protein FG10789.1 [Gibberella zeae PH-1]
gi|408391605|gb|EKJ70977.1| hypothetical protein FPSE_08836 [Fusarium pseudograminearum CS3096]
Length = 395
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
+ Q LL+L G+P+I+AP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 DCQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYAAASEDMDTLCFNTPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 200 RKEPIQEIRLDKVLEGLNMERKQFVDLCILLGCDYLDPIPKVGPSTALKMI-----RDHG 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE+M +N KK + +D+P + + +PD+
Sbjct: 255 SLEKVVEAM---ENDSKKK-------------YVIPEDWPYKDARDLFFEPDVRQADHPD 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + G+S++RV
Sbjct: 299 CDFKWEKPDMEGLVKFLVTEKGFSEDRV 326
>gi|83773193|dbj|BAE63320.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F A + ++
Sbjct: 104 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L ++ R++ I L +L+G DY + VGP TAL+++ +F +
Sbjct: 164 RKEPILEIHLSRALEGLDMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREFGSLEK- 222
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+VE M ++ P + + +D+P E +L PD+
Sbjct: 223 ----VVEHM---------ESDPK-------KKYVIPEDWPYQDARELFLNPDVREASHPD 262
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL F G++++RV
Sbjct: 263 CDFKWEAPDIEGLVEFLVKDKGFNEDRV 290
>gi|398398872|ref|XP_003852893.1| hypothetical protein MYCGRDRAFT_40040, partial [Zymoseptoria
tritici IPO323]
gi|339472775|gb|EGP87869.1| hypothetical protein MYCGRDRAFT_40040 [Zymoseptoria tritici IPO323]
Length = 517
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 19/214 (8%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A++LL+ FG P+ VAPGEAEA+CA L+ V+++D D +FG+ K++ + S
Sbjct: 102 AKQLLKQFGFPWHVAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLKSWTAESSQ 161
Query: 382 ----HVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALEIL-AKFSP- 434
HV Y A + L + +I +AL+ G DY G+ G GP A + A F
Sbjct: 162 KTPTHVTVYRAEETTARSGLDTQGMILVALMSGGDYIVEGIPGCGPKVACDAARAGFGKE 221
Query: 435 -SDSPNQNYIVESMRRFKNWLAKKNKPDTH--LTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
D + + +R ++ L + K + +RK + + +DFPN V+ Y P +
Sbjct: 222 LCDLAARKDAM-GLRAWRERLQHEIKTNESKLFSRKNSKLVIPEDFPNREVLGYYTHPCV 280
Query: 492 NTNVQ------KLAWGTP-DLDGLRRFAANKFGW 518
+T + LAW D LR F A+ F W
Sbjct: 281 STADKLAKLKDSLAWDQDIDFAALRGFTADAFDW 314
>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
Length = 345
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 34/218 (15%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ L+ L G+P + AP EAEAQCA+L +++D D FG+ + +
Sbjct: 140 EAKRLVTLMGIPVLDAPCEAEAQCAALARAGKVFATVSEDMDALTFGSPILLRQMIASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V + F + E+ I L +L+G DY ++G+GP A E++ K +
Sbjct: 200 KKLPVKEMNLNQVLKDFGMNMEQFIDLCILLGCDYVSTIRGIGPKKAFELIKKHECIE-- 257
Query: 439 NQNYIVESMRRF--KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI--NTN 494
N I++ + KNW K+ R+L +L+PD+ N
Sbjct: 258 NVLKIIDQTKYAIPKNWQYKE-------ARRL-----------------FLEPDVMDCEN 293
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
V+ L W PD++G+ +F + ++++RV +L + K
Sbjct: 294 VE-LVWKEPDVEGIVQFLCGEKSFNEDRVRGSLTRMQK 330
>gi|327278874|ref|XP_003224185.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Anolis
carolinensis]
Length = 515
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P++ APGEAEA CA+L N T+D D FG+ + ++
Sbjct: 273 ECKKLLTLMGIPYVDAPGEAEASCAALVKANKVYAAATEDMDCLTFGSPVLMRHLTASEA 332
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I LT+E+ + L +L+G DY ++G+GP A+E++ + +
Sbjct: 333 KKLPIQEFHLSRILQDLSLTQEEFVDLCILLGCDYCESIRGIGPKRAVELIKQHKSIEKI 392
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
Q + +NWL K+ + + +L+P+ I+ +
Sbjct: 393 IQQIDTKKYSLPENWLHKEAQ------------------------QLFLEPEVIDAEAVE 428
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P+ + L F + +++ R+
Sbjct: 429 LKWSEPNEEELVNFMCGEKQFNEERI 454
>gi|414590012|tpg|DAA40583.1| TPA: hypothetical protein ZEAMMB73_816984 [Zea mays]
Length = 636
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KKR +R + E ELL+ G+P + A GEAEA CA L H IT DSD +L+GA
Sbjct: 119 KKRNAAFTRAVEECVELLEYLGMPVLRANGEAEALCAQLNSEGHVDACITADSDAFLYGA 178
Query: 370 RTVYKNF-FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALE 427
+TV K + K Y DI L R++++ +ALL+GSD+ G+ G G TAL
Sbjct: 179 KTVVKVLRSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHDLHGVPGFGLETALR 238
Query: 428 ILAKF 432
+ F
Sbjct: 239 FVQLF 243
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 448 RRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN----TNVQKLAWGTP 503
RR +NW K K + +FPN +I+ YL D N V L W P
Sbjct: 341 RRHENWQIKVCK----------RIAAETNFPNDEIIKLYLS-DNNLVEEKGVPLLTWNKP 389
Query: 504 DLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
D++ L + K W + + Q+++P++ I R
Sbjct: 390 DVEALVDLLSYKQNWEPSYIRQSMLPMLSTIYLR 423
>gi|449304737|gb|EMD00744.1| hypothetical protein BAUCODRAFT_29098 [Baudoinia compniacensis UAMH
10762]
Length = 962
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 18/214 (8%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A++LL+ FG P+ +APGEAEA+CA L+ V+++D D +FG+ ++++ + S
Sbjct: 107 AKQLLKEFGFPWHIAPGEAEAECALLQREGVVDAVLSEDVDTLMFGSGVTFRSWSAEGST 166
Query: 382 -----HVLRYTAPDIRYYFE-LTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFS 433
HV Y + + L R+ +I +AL+ G DY P G+ G GP A + A F
Sbjct: 167 TKSPTHVSVYREEETKQRSRGLDRDGMILVALMSGGDYLPEGIPGCGPKVACDAARAGFG 226
Query: 434 PSDSPNQNYIVESMRRFKNWLAKKNKPD--THLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+R ++ L + + + + +RK + + + FPN+ V+ Y P +
Sbjct: 227 KELCALGAKDTAGLRLWRERLQHQIRTNEAKYFSRKNGSFTMPEKFPNLEVLGYYTHPCV 286
Query: 492 NTN--VQKLAWGTP-----DLDGLRRFAANKFGW 518
+ VQKL G D LR F + F W
Sbjct: 287 SKQDKVQKLRDGLKWDQDIDFAALRTFTTDAFDW 320
>gi|348540973|ref|XP_003457961.1| PREDICTED: flap endonuclease 1-like [Oreochromis niloticus]
Length = 380
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E ++LL L GVP+I AP EAEA CA+L T+D D FG + ++ ++
Sbjct: 140 ECKKLLTLMGVPYIEAPCEAEASCAALVKAGKVFATATEDMDGLTFGTNILLRHLTASEA 199
Query: 382 HVLRYTAPDIRYYFE-------LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
L P ++F LT E+ I L +L+G DY ++G+GP A++++ +
Sbjct: 200 KKL----PIQEFHFSRILQDIGLTNEQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGS 255
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INT 493
+ +N ++WL K+ R L +LKP+ ++
Sbjct: 256 IEEILENIDSNKHPAPEDWLYKE-------ARGL-----------------FLKPEVVDC 291
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ +L W PD +GL +F + +S++R+ I+K
Sbjct: 292 STVELKWNEPDEEGLIQFMCEEKQFSEDRIRNGCKKIVK 330
>gi|123335114|ref|XP_001294157.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121871805|gb|EAX81227.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 335
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 28/213 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E ++LL+ GVP++ AP EAEA+CA+L + T+D D F + ++ + K
Sbjct: 109 ECKQLLECLGVPYVDAPCEAEAECAALNKAGLVDAMATEDMDSLAFATPQLIRHLSYGAK 168
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+L+ + LTRE+ + +L+G DY ++G+G A E++ K+ N
Sbjct: 169 GDDLLQIDYKIMMEKSGLTREEFVDFCILMGCDYCDTIKGIGKKHAYELIKKYH-----N 223
Query: 440 QNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLA 499
I++++ + +L +DF V E + ++ T+V L
Sbjct: 224 IETIIKNLD--------------------KKYELPEDFDYVRARELFFNHEVTTDVN-LT 262
Query: 500 WGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
W PD++ ++ F ++++RV+ I+K
Sbjct: 263 WKKPDVEKVKEFLCGSRMFAESRVEAACAKIVK 295
>gi|195155221|ref|XP_002018504.1| GL16728 [Drosophila persimilis]
gi|317374892|sp|B4GIM3.1|FEN1_DROPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194114300|gb|EDW36343.1| GL16728 [Drosophila persimilis]
Length = 386
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + E+ + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW N K+ E +++P++ + +
Sbjct: 260 LDNLDTSKYTVPENW----------------NYKV--------ARELFIEPEVADASAID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL +F +S+ RV
Sbjct: 296 LKWTEPDEEGLVKFLCGDRQFSEERV 321
>gi|148234716|ref|NP_001080984.1| flap endonuclease 1-B [Xenopus laevis]
gi|82071413|sp|P70054.1|FEN1B_XENLA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B;
Short=xFEN-1b
gi|1549393|gb|AAB08478.1| XFEN1b [Xenopus laevis]
gi|213623174|gb|AAI69390.1| Flap endonuclease 1 [Xenopus laevis]
gi|213626408|gb|AAI69394.1| Flap endonuclease 1 [Xenopus laevis]
Length = 382
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E ++LL L G+P++ AP EAEA CA+L T+D D FG + ++ ++
Sbjct: 140 ECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEA 199
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L + F+ + E+ + L +L+GSDY ++G+GP A++++ + +
Sbjct: 200 KKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
N ++ +NWL K+ + + +L+P+ I+ ++ +
Sbjct: 260 IDNIDLKKYPIPENWLHKEAR------------------------QLFLEPEVIDADITE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL F + +S++R+
Sbjct: 296 LKWTEPDEEGLVAFMCGEKQFSEDRI 321
>gi|57641216|ref|YP_183694.1| flap endonuclease-1 [Thermococcus kodakarensis KOD1]
gi|73919352|sp|Q5JGN0.1|FEN_PYRKO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57159540|dbj|BAD85470.1| flap structure-specific endonuclease [Thermococcus kodakarensis
KOD1]
Length = 340
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 54/223 (24%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LL+L G+P + AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNL----T 189
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTP-GLQGVGPVT 424
R P Y E + REKLI+LA+LVG+DY P G++G+GP
Sbjct: 190 ITGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL I+ +R K+ LAK K D ++ E
Sbjct: 250 ALTIV------------------KRTKDPLAKYQK--------------ESDVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L P + T+ +L W PD +G+ +F ++ +S+ RV L
Sbjct: 278 FFLNPPV-TDDYELKWREPDEEGILKFLCDEHDFSEERVKNGL 319
>gi|82187497|sp|Q6TNU4.1|FEN1A_DANRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|37362214|gb|AAQ91235.1| flap structure-specific endonuclease 1 [Danio rerio]
gi|47940409|gb|AAH71488.1| Fen1 protein [Danio rerio]
Length = 380
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 33/244 (13%)
Query: 297 AEAQCASLELGTDK--KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNH 353
A+AQ A + DK KR V+++ E ++LL L GVP+I AP EAEA CA+L
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 354 TQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVG 410
T+D D FG + ++ KK + + I ELT ++ I L +L+G
Sbjct: 172 VYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLG 231
Query: 411 SDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRN 470
DY ++G+GP A++++ + + +N ++WL K+ R L
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKE-------ARGL-- 282
Query: 471 VKLNDDFPNVSVIEAYLKPDI--NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLI 528
+L+P++ T+V L W PD DGL +F + +S++R+
Sbjct: 283 ---------------FLEPEVVDGTSVD-LKWNEPDEDGLIQFMCAEKQFSEDRIRNGCK 326
Query: 529 PIMK 532
I K
Sbjct: 327 KITK 330
>gi|405964237|gb|EKC29743.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 417
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
T+ RP+ + + E+L+ G+P I APGEAEA CA L+ GV+T DSD L+
Sbjct: 33 TNSVDRPWFKSIVEKCFEVLKCLGLPCIKAPGEAEAYCAWLDENGLVDGVLTSDSDALLY 92
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
GART FD V Y I +TRE L+ +A+LVG DY G++ +G A E
Sbjct: 93 GART-----FDYA--VDLYEMSVIEERLGMTRETLVAMAMLVGCDYDEGIRDIGIEKAQE 145
Query: 428 IL 429
+
Sbjct: 146 LF 147
>gi|198477405|ref|XP_002136633.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
gi|317374893|sp|B5DUR8.1|FEN1_DROPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|198142925|gb|EDY71637.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + E+ + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW N K+ E +++P++ + +
Sbjct: 260 LDNLDTSKYTVPENW----------------NYKV--------ARELFIEPEVADASAID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL +F +S+ RV
Sbjct: 296 LKWTEPDEEGLVKFLCGDRQFSEERV 321
>gi|332021297|gb|EGI61676.1| Flap endonuclease 1-B [Acromyrmex echinatior]
Length = 381
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 26/205 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ELLQL G+P++ AP EAEAQCA+L T+D D FG + +
Sbjct: 140 EAKELLQLMGIPYVDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + EL + I L +++G DYT ++GVGP A+E++ +
Sbjct: 200 RKLPVQEIHFDKVLAGLELNHNEFIDLCIMLGCDYTNSIKGVGPKRAIELIKNHRSLEKI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+N V+ ++W ++ +L P VS PD +VQ L
Sbjct: 260 IENIDVKKYPIPEDW-------------NYKDARLLFQEPEVS------NPD---DVQ-L 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRV 523
W PD +GL +F +++ RV
Sbjct: 297 KWSEPDEEGLVKFLCGDKQFNEERV 321
>gi|325094624|gb|EGC47934.1| DNA repair protein RAD2 [Ajellomyces capsulatus H88]
Length = 359
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F + + ++
Sbjct: 104 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 164 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 218
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ K+ P T + +D+P E + PD+
Sbjct: 219 SLEQVVEAI---------KSDPKKKYT-------IPEDWPYKEARELFFDPDVRNADHPD 262
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 263 CDFKWEAPDVEGLVKFLVEEKAFSEDRV 290
>gi|429964650|gb|ELA46648.1| hypothetical protein VCUG_01874 [Vavraia culicis 'floridensis']
Length = 720
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 36/139 (25%)
Query: 324 QELLQLFGVPFIVAPGEAEAQ-------CASLE---------------LGNH-------- 353
+++L + GV +I AP E+++Q CAS LGN+
Sbjct: 512 KKILNILGVSYIDAPYESDSQLGYFNNECASERSTRESTSKTEERYSYLGNNQVFNEKIY 571
Query: 354 ---TQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVG 410
VIT+D+D++LFGA +YK++F YT +I+ L RE LI+L++ +G
Sbjct: 572 NLKVDAVITEDNDVFLFGASRIYKDYFRGPK---LYTMQNIKNKLNLEREDLIKLSVFMG 628
Query: 411 SDYTPGLQGVGPVTALEIL 429
+DYT G++G+GP ALEIL
Sbjct: 629 NDYTVGIRGIGPKKALEIL 647
>gi|225555317|gb|EEH03609.1| DNA-repair protein rad2 [Ajellomyces capsulatus G186AR]
Length = 359
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F + + ++
Sbjct: 104 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 164 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 218
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ K+ P T + +D+P E + PD+
Sbjct: 219 SLEQVVEAI---------KSDPKKKYT-------IPEDWPYKEARELFFDPDVRKADHPD 262
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 263 CDFKWEAPDVEGLVKFLVEEKAFSEDRV 290
>gi|238506000|ref|XP_002384202.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|317151109|ref|XP_001824453.2| DNA repair protein rad2 [Aspergillus oryzae RIB40]
gi|317374884|sp|B8NV37.1|FEN1_ASPFN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220690316|gb|EED46666.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|391868743|gb|EIT77953.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 395
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F A + ++
Sbjct: 140 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L ++ R++ I L +L+G DY + VGP TAL+++ +F +
Sbjct: 200 RKEPILEIHLSRALEGLDMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREFGSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+VE M ++ P + + +D+P E +L PD+
Sbjct: 259 ----VVEHM---------ESDPK-------KKYVIPEDWPYQDARELFLNPDVREASHPD 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL F G++++RV
Sbjct: 299 CDFKWEAPDIEGLVEFLVKDKGFNEDRV 326
>gi|397780742|ref|YP_006545215.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
gi|396939244|emb|CCJ36499.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
Length = 333
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 44/234 (18%)
Query: 316 VSRKMLEA-QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+ R ++E+ ELL L G+P + AP E EAQ A + ++ D D LFG+ + +
Sbjct: 128 IDRHIIESSHELLDLLGIPVVQAPSEGEAQAAHMVRSGGVTYAVSQDYDSLLFGSPVLVR 187
Query: 375 NFF---DKKSHVLRYTAPDIRYYFE-------LTREKLIQLALLVGSDYTPGLQGVGPVT 424
N +K+ T R+ +TRE+LI++ +LVG+D+ PG++GVG T
Sbjct: 188 NLTVSGRRKARGRTITVNPERFVLSSVLDRLGVTREQLIEIGILVGTDFNPGIRGVGGKT 247
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL+++ F++ +A+K DF + E
Sbjct: 248 ALKVVRS----------------GEFESLIAEKQP----------------DFDPGPIRE 275
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ P I T+ L W TPD++ + ++ +S++RV L + K +Q++
Sbjct: 276 FFQNPPI-TDDYALEWRTPDVERVVEMLCGRYDFSEDRVRNALTKVSVKATQKT 328
>gi|390961742|ref|YP_006425576.1| flap endonuclease-1 [Thermococcus sp. CL1]
gi|390520050|gb|AFL95782.1| flap endonuclease-1 [Thermococcus sp. CL1]
Length = 341
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 54/230 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LL+L G+P I AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKKLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPRLVRNL----T 189
Query: 382 HVLRYTAPDIRYYFELT----------------REKLIQLALLVGSDYTP-GLQGVGPVT 424
R P Y E+ REKLI++A+LVG+DY P G++G+GP
Sbjct: 190 ITGRRKLPGKNAYVEVKPELVVLEEVLKELGVDREKLIEMAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL I+ +R K+ L K K + D ++ E
Sbjct: 250 ALTIV------------------KRTKDPLRKYQK--------------DSDVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+L P + T+ +L W PD +G+ RF ++ +S+ RV + + K +
Sbjct: 278 FFLNPPV-TDEYELKWREPDEEGIIRFLCDEHDFSEERVKNGIERLKKAV 326
>gi|444323335|ref|XP_004182308.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
gi|387515355|emb|CCH62789.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 20/217 (9%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL L G+P+I AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAKKLLGLMGIPYITAPSEAEAQCAELAKAGVVYAAASEDMDTLCYRVPHLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ I L +++G DY ++GVGPVTAL+++ +F +
Sbjct: 198 KKEPIHELDVEVVLRGLDLTIEQFIDLGIMLGCDYCDSIRGVGPVTALKLIKEFGSLEK- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
IVE K+K K+ +++P E + PD I +
Sbjct: 257 ----IVEHFSEENEQKGGKSK-----------YKIPENWPYKEARELFTNPDVIQGKDVE 301
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
L W P + L F + +S++RV + + K +
Sbjct: 302 LKWTPPKEEELIEFLCTEKMFSEDRVKSGIARLKKAL 338
>gi|341583087|ref|YP_004763579.1| flap endonuclease-1 [Thermococcus sp. 4557]
gi|340810745|gb|AEK73902.1| flap endonuclease-1 [Thermococcus sp. 4557]
Length = 341
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 54/230 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A+ LL+L G+P I AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKRLLELMGIPVIQAPSEGEAQAAYMAARKKVYASASQDYDSLLFGAPRLVRNV----T 189
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTP-GLQGVGPVT 424
R P Y E + REKLI++A+LVG+DY P G++G+GP
Sbjct: 190 ITGRRKLPGKNVYVEVRPELIVLEEVLKELGIDREKLIEMAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL I+ +R K+ L K NK + + ++ E
Sbjct: 250 ALTIV------------------KRTKDPLKKYNK--------------DSEVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+L P + T+ +L W PD +G+ +F ++ +S+ RV L + K +
Sbjct: 278 FFLNPPV-TDEYELKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAV 326
>gi|317374936|sp|C6HQJ2.2|FEN1_AJECH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F + + ++
Sbjct: 140 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 200 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ K+ P T + +D+P E + PD+
Sbjct: 255 SLEQVVEAI---------KSDPKKKYT-------IPEDWPYKEARELFFDPDVRNADHPD 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVEEKAFSEDRV 326
>gi|270011949|gb|EFA08397.1| hypothetical protein TcasGA2_TC006044 [Tribolium castaneum]
Length = 591
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 47/274 (17%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G K R + + +E+L L G+ + GEAEA CA L G+I+ DSD +
Sbjct: 101 GAKTKDRSRFNHTLKRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFA 160
Query: 367 FGARTVYKNF--------FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQ 418
+GAR VY+NF K V Y R K+I LALL GSDY+ G+
Sbjct: 161 YGARVVYRNFSISQQGNQAAKGGSVDVYDISVANERLNFGRNKIIALALLCGSDYSDGVH 220
Query: 419 GVGPVTAL---------EILAKF-------------------SPSDSPNQNYIVESMRRF 450
G+G + + EIL + + S + V++ +
Sbjct: 221 GIGKDSVVKFFNLVKDDEILQRLRSWRHASIYDDLEAKICDKNRCTSCGHSGKVQAHAKK 280
Query: 451 KNWLAKKNKPDTHLTRKLR-------NVK----LNDDFPNVSVIEAYLKPDINTNVQKLA 499
+ K N+ + R N++ L+ +FP+ ++I +L + L
Sbjct: 281 GCIVCKTNQGCGSSYKNERLEIKNELNMRSKALLDPNFPDENLINEFLGQKSTVSELDLR 340
Query: 500 WGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
W PDL +F W + + PI+ +
Sbjct: 341 WRKPDLANFIKFTVKYLTWEEIYGFEKFFPILTR 374
>gi|302504898|ref|XP_003014670.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
gi|291177976|gb|EFE33767.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
Length = 359
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEAQCA L G ++D D F A + ++
Sbjct: 104 ECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQ 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + + + L +L+G DY + VGP TAL+++ D
Sbjct: 164 RKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMI-----RDHG 218
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ ++ P + + DD+P + E + PD+ +
Sbjct: 219 TLEKVVEAI---------QSDPK-------KKYVIPDDWPYLQARELFFNPDVRPADAPE 262
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL RF + G+S++RV
Sbjct: 263 CDFKWSAPDVEGLVRFLVEEKGFSEDRV 290
>gi|302652986|ref|XP_003018331.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
gi|291181960|gb|EFE37686.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
Length = 376
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEAQCA L G ++D D F A + ++
Sbjct: 121 ECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQ 180
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + + + L +L+G DY + VGP TAL+++ D
Sbjct: 181 RKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMI-----RDHG 235
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE+++ + + + DD+P + E + PD+ +
Sbjct: 236 TLEKVVEAIQ----------------SDPKKKYVIPDDWPYLQARELFFNPDVRPADAPE 279
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL RF + G+S++RV
Sbjct: 280 CDFKWSAPDVEGLVRFLVEEKGFSEDRV 307
>gi|392569258|gb|EIW62431.1| hypothetical protein TRAVEDRAFT_68878 [Trametes versicolor
FP-101664 SS1]
Length = 1191
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF------- 376
Q+L+++FG+ A GEAEA+ L H V+TDD+D +LFGAR + KN
Sbjct: 116 QKLIRIFGMDCREAKGEAEAELGRLNALGHIDAVLTDDADTFLFGARMLLKNVSLNLTGN 175
Query: 377 -------FDKKS---HVLRYTAPDIRYYFE--LTREKLIQLALLVGSDYTPGLQGVGPVT 424
+ K H YTA R + E L+R LI +ALL G DY G+ GVG
Sbjct: 176 KAHPALNLNGKPCDQHATVYTAQAFRDHPEVRLSRGGLILIALLSGGDYDSGVFGVGTGV 235
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAK---------KNKPDTHLTRKLRNVKLND 475
A LA+ D +NY F+ WL + +T + + +
Sbjct: 236 A-HALARLDYGDQLIRNYTSLDAATFQAWLPGWRADMTLEVQTNASGLMTTRRPSTTIPA 294
Query: 476 DFPNVSVIEAYLKPDINTN-----VQKLAWGTPDLDGL 508
+FPN+ + Y++P + N ++A P L G
Sbjct: 295 NFPNMDTLAKYVRPALFANGGGPPADRVAIDVPALAGF 332
>gi|189239788|ref|XP_969346.2| PREDICTED: similar to XPG-like endonuclease CG10670-PA [Tribolium
castaneum]
Length = 565
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 47/274 (17%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G K R + + +E+L L G+ + GEAEA CA L G+I+ DSD +
Sbjct: 101 GAKTKDRSRFNHTLKRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFA 160
Query: 367 FGARTVYKNF--------FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQ 418
+GAR VY+NF K V Y R K+I LALL GSDY+ G+
Sbjct: 161 YGARVVYRNFSISQQGNQAAKGGSVDVYDISVANERLNFGRNKIIALALLCGSDYSDGVH 220
Query: 419 GVGPVTAL---------EILAKF-------------------SPSDSPNQNYIVESMRRF 450
G+G + + EIL + + S + V++ +
Sbjct: 221 GIGKDSVVKFFNLVKDDEILQRLRSWRHASIYDDLEAKICDKNRCTSCGHSGKVQAHAKK 280
Query: 451 KNWLAKKNKPDTHLTRKLR-------NVK----LNDDFPNVSVIEAYLKPDINTNVQKLA 499
+ K N+ + R N++ L+ +FP+ ++I +L + L
Sbjct: 281 GCIVCKTNQGCGSSYKNERLEIKNELNMRSKALLDPNFPDENLINEFLGQKSTVSELDLR 340
Query: 500 WGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
W PDL +F W + + PI+ +
Sbjct: 341 WRKPDLANFIKFTVKYLTWEEIYGFEKFFPILTR 374
>gi|326919868|ref|XP_003206199.1| PREDICTED: flap endonuclease 1-like [Meleagris gallopavo]
Length = 381
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 31/233 (13%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EAQ A E +K KR V+++ E ++LL L G+P++ APGEAEA CA+L
Sbjct: 113 EAQEAGEETNIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + I LT E+ + L +L+G
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLGLTWEQFVDLCILLGC 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNV 471
DY ++G+GP A+E++ + + Q+ + +NWL K+ +KL
Sbjct: 233 DYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKE-------AQKL--- 282
Query: 472 KLNDDFPNVSVIEAYLKPD-INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+L+PD +N + +L W P+ + L +F + +++ R+
Sbjct: 283 --------------FLEPDVVNPDDVELKWTEPNEEELVQFMCGEKQFNEERI 321
>gi|317376191|sp|B9EMY6.1|FEN1_SALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|221220444|gb|ACM08883.1| Flap endonuclease 1-B [Salmo salar]
gi|221221934|gb|ACM09628.1| Flap endonuclease 1-B [Salmo salar]
Length = 380
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L GVP+I AP EAEA CA+L T+D D FG + ++
Sbjct: 140 ECKKLLTLMGVPYIEAPCEAEASCAALVKAGKVFATATEDMDGLTFGTGVLLRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + LT E+ I L +L+G DY ++G+GP A++++ + +
Sbjct: 200 KKLPIQEFQFTRLLQDINLTHEQFIDLCILLGCDYCGTIKGIGPKRAIDLIRQHGSIEEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+N ++S +K P+ L ++ R + L D + S ++ L
Sbjct: 260 LEN--IDS--------SKHPAPEDWLYKEARGLFLQPDVVDCSTVD-------------L 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
W PD D L +F + +S++R+ I+K
Sbjct: 297 KWSEPDEDALIQFMCAEKQFSEDRIKNGCKKILK 330
>gi|303312977|ref|XP_003066500.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106162|gb|EER24355.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 359
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F + + ++
Sbjct: 104 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 164 RKEPIQEIHLERVLEGLGMDRKQFVDLCILLGCDYVDPIPKVGPNTALKMI-----RDHG 218
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE+M +N P T + +D+P + + +PD+
Sbjct: 219 SLEKVVEAM---------ENDPKKKYT-------IPEDWPYEQARDLFFEPDVRPADHPE 262
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W +PD++GL +F G+S++RV
Sbjct: 263 CDFKWESPDVEGLVKFLVEGKGFSEDRV 290
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E ++LL+L G+P+I AP EAEAQCA L
Sbjct: 89 KFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVL 130
>gi|156553807|ref|XP_001603401.1| PREDICTED: flap endonuclease 1-like [Nasonia vitripennis]
Length = 381
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 32/208 (15%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL L G+PFI AP EAEAQCA++ T+D D FG + + S
Sbjct: 140 EAKQLLTLMGIPFIDAPCEAEAQCAAMVKSGKVYATATEDMDALTFGCNVLLRRL--TFS 197
Query: 382 HVLRYTAPDIRY-----YFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+ +I+Y LTR++ I L +++G DYT ++GVGP A+E++
Sbjct: 198 EARKMPIQEIQYDKVLNGLGLTRDEFIDLCIMLGCDYTTSIKGVGPKRAIELI------- 250
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
+N+ +S+ + L K P + +D+ + +++P++ +
Sbjct: 251 ---KNH--KSLEKILENLDTKKFP------------VPEDWNYKDARQLFIEPEVKDPEE 293
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL +F ++++RV
Sbjct: 294 VDLKWNDPDEEGLVKFLCGDKQFNEDRV 321
>gi|396081098|gb|AFN82717.1| flap endonuclease-1 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 309 DKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
DK++ + E + LL L G+PF AP EAEA CA L GV T+D D FG
Sbjct: 126 DKRKTKVTGIHVEECKRLLGLMGIPFETAPSEAEAYCALLCKKRAVYGVATEDMDSLTFG 185
Query: 369 ARTVYKNFFDKKSHVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ V +NF +S L ++R E L +++ I L +L+G DY L+G+GP A
Sbjct: 186 SPVVLRNFSGTRSKKLPVVEYNLRQLLEDLSLDQDEFIDLCILLGCDYCDTLKGIGPKKA 245
Query: 426 LEILAK 431
L ++ K
Sbjct: 246 LGLIKK 251
>gi|154286840|ref|XP_001544215.1| flap endonuclease [Ajellomyces capsulatus NAm1]
gi|317374874|sp|A6QV55.1|FEN1_AJECN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150407856|gb|EDN03397.1| flap endonuclease [Ajellomyces capsulatus NAm1]
Length = 395
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F + + ++
Sbjct: 140 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 200 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ K+ P T + +D+P E + PD+
Sbjct: 255 SLEQVVEAI---------KSDPKKKYT-------IPEDWPYKEARELFFDPDVRKADHPD 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVEEKAFSEDRV 326
>gi|307102466|gb|EFN50740.1| hypothetical protein CHLNCDRAFT_37697 [Chlorella variabilis]
Length = 389
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L GVP + AP EAEAQCA L G+ T+D D FG + ++
Sbjct: 141 ECKRLLRLMGVPVLEAPSEAEAQCAQLCKDGLVYGISTEDMDSLTFGTPKLIRHLMAPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + ELT ++ I L +L G DYT + G+G V AL ++ K
Sbjct: 201 QKPLAMEFDHELVLKELELTEDQFIDLCILCGCDYTAKISGIGAVRALSLIKKHGS---- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI--NTNVQ 496
+ LA + + ++ + FP + +PD+ +
Sbjct: 257 -----------IEGVLAALDS---------KKYQIPEPFPYQEARRLFKEPDVVKGDQIP 296
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L W +PD +GL F + ++++R+ + +
Sbjct: 297 QLKWTSPDTEGLIDFLVKEKTFAEDRIRKAV 327
>gi|195488056|ref|XP_002092153.1| GE14031 [Drosophila yakuba]
gi|317374898|sp|B4P5U9.1|FEN1_DROYA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194178254|gb|EDW91865.1| GE14031 [Drosophila yakuba]
Length = 387
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + + + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYEKLLEGLSINSREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW + + R+L +++P++ N +
Sbjct: 260 LDNLDSSKYTVPENW-------NYKVAREL-----------------FIEPEVANADNID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD +GL +F +S+ RV +MK
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFSEERVRNGAKKLMK 330
>gi|409095300|ref|ZP_11215324.1| flap endonuclease-1 [Thermococcus zilligii AN1]
Length = 340
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 54/223 (24%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LL+L G+P + AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKKLLELMGIPVVQAPSEGEAQAAYMAAKGKVYASASQDYDSLLFGAPKLVRNL----T 189
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTP-GLQGVGPVT 424
R P Y E + REKLI+LA+LVG+DY P G++G+GP
Sbjct: 190 ITGRRKLPGKEVYVEVKPELIVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL I+ + I + +R++ N +++ D + ++ E
Sbjct: 250 ALMIVKR-----------INDPLRKYSN----ESEVDLY-----------------AIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L P + T+ +L W PD +G+ RF + +S+ RV L
Sbjct: 278 FFLNPPV-TDDYELTWREPDEEGILRFLCEEHDFSEERVKGGL 319
>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
gi|259645975|sp|C6A1U9.1|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
Length = 340
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 50/221 (22%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN------ 375
+A++LL+L G+P++ AP E EAQ A + + D D LFG + +N
Sbjct: 134 DAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLTITGK 193
Query: 376 --------FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTAL 426
+ + K ++ D+ +LTREKLI+LA+LVG+DY P G++G+GP AL
Sbjct: 194 RKLPGKDVYIEVKPELI--LLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKKAL 251
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
EI+ S P Y +K V L ++ E +
Sbjct: 252 EIVKY---SKDPLSKY-----------------------QKTSEVDL------YAIKEFF 279
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
L P TN KL W PD + + +F ++ +S+ RV L
Sbjct: 280 LNPP-TTNDYKLEWKLPDEESIIKFLCDEHDFSEERVKNGL 319
>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
Length = 519
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F + + ++
Sbjct: 264 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 323
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 324 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 378
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK- 497
+ +VE++ K+ P T + +D+P E + PD+
Sbjct: 379 SLEQVVEAI---------KSDPKKKYT-------IPEDWPYKEARELFFDPDVRNADHPD 422
Query: 498 --LAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 423 CDFKWEAPDVEGLVKFLVEEKAFSEDRV 450
>gi|297668153|ref|XP_002812316.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Pongo abelii]
Length = 912
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L G+P++ A GE EA CA L +G+H G +T+D D +L
Sbjct: 102 SQKTGRSHFKSVLRECLHMLXCLGIPWVQAAGEPEALCAYLIVGDHVDGCLTNDGDTFLX 161
Query: 368 GARTVYKNFFDKKS------HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGV 420
Y F D HV YT I+ L R+ L+ LA+L+G DY P G+ GV
Sbjct: 162 XXXXXYVLFEDXTKSVLXDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGV 221
Query: 421 GPVTALEIL 429
G AL+++
Sbjct: 222 GKEQALKLI 230
>gi|326474338|gb|EGD98347.1| hypothetical protein TESG_05726 [Trichophyton tonsurans CBS 112818]
Length = 778
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 309 DKKRRPYVSRKMLEAQ-----ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
D KR VS+ AQ +L++LF P +APGEAEA+CA L+ V+++D D
Sbjct: 85 DYKRGRLVSKNAAAAQIELSRKLIELFSYPCHMAPGEAEAECAKLQQAGVVDAVMSNDVD 144
Query: 364 IWLFGARTVYKNF-------FDKKSHVLRYT--APDIRYYFELTREKLIQLALLVGSDYT 414
+FG++ N+ +HV Y A D L + ++ +ALL G DY+
Sbjct: 145 ALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTKGMVLVALLSGGDYS 204
Query: 415 P-GLQGVGPVTALEIL-AKFSP-------------SDSPNQNYIVESMRRFKNWLAKKNK 459
P G+ GP A+EI A F S + + E R + L ++
Sbjct: 205 PAGVALCGPKLAVEIARAGFGEDLFEITQDLLSGRSTKKTEEALCEWRERLQYEL--QSN 262
Query: 460 PDTHLTRKLRNVKLNDDFPNVSVIEAYLKP------DINTNVQKLAWGTP-DLDGLRRFA 512
+ K + VK+ DFPN++ + + + P D++T + WG D+D LR F
Sbjct: 263 ESGYFKTKHKAVKIPADFPNLAALRSCVDPVTSSLKDMDTLRRLDIWGRRVDVDRLRAFV 322
Query: 513 ANKFGW 518
GW
Sbjct: 323 GRYLGW 328
>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 397
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 29/207 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP + AP EAEAQCA + G+ T+D D FGA V ++ S
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAQCAEMAKAGLVYGLATEDMDALTFGAPRVIRHLMAPSS 200
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ D + L ++ I + +L+G DY ++G+G V AL+++ K ++
Sbjct: 201 SNVPVQEIDRAVALQELGLDDDQFIDMCILMGCDYCGTIRGIGAVRALQLIKKHGSIEA- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
I+E + + K + + FP E + P++ +
Sbjct: 260 ----ILEELDKAK-------------------FPVPEPFPYKESHEFFKNPEVTPAAELP 296
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRV 523
+L W +PD +GL +F N+ +S+ RV
Sbjct: 297 QLKWSSPDEEGLVQFLVNEKNFSEQRV 323
>gi|150866777|ref|XP_001386488.2| hypothetical protein PICST_33791 [Scheffersomyces stipitis CBS
6054]
gi|317376214|sp|A3M056.2|FEN1_PICST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|149388033|gb|ABN68459.2| Exodeoxyribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 381
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 110/218 (50%), Gaps = 26/218 (11%)
Query: 311 KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ EA++LL+L G+P++ AP EAEAQCA L ++D D +
Sbjct: 129 KRLVRVSREQNDEAKKLLELMGIPYVNAPCEAEAQCAELARTGKVFAAASEDMDTLCYEP 188
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ +K + + T + E+T+ + I + +L+G DY ++GVGPVTA
Sbjct: 189 PYLLRHLTFAEARKMPINQITYSEAIAGLEMTKPQFIDMCILLGCDYCETIKGVGPVTAY 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + + I+E + +++ T K K+ +++P + +
Sbjct: 249 KLIKEHGSLEK-----IIEHI-------------NSNPTSKY---KVPENWPYDEARQLF 287
Query: 487 LKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ P++ + L W PD++GL ++ + G+S++R+
Sbjct: 288 MDPEVTKGEEVTLKWKEPDVEGLIQYMVREKGFSEDRI 325
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
++ + + EA++LL+L G+P++ AP EAEAQCA L
Sbjct: 134 VSREQNDEAKKLLELMGIPYVNAPCEAEAQCAEL 167
>gi|320036635|gb|EFW18574.1| flap endonuclease [Coccidioides posadasii str. Silveira]
gi|392864029|gb|EAS35174.2| flap endonuclease 1 [Coccidioides immitis RS]
Length = 395
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F + + ++
Sbjct: 140 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + + R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 200 RKEPIQEIHLERVLEGLGMDRKQFVDLCILLGCDYVDPIPKVGPNTALKMI-----RDHG 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE+M +N P T + +D+P + + +PD+
Sbjct: 255 SLEKVVEAM---------ENDPKKKYT-------IPEDWPYEQARDLFFEPDVRPADHPE 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W +PD++GL +F G+S++RV
Sbjct: 299 CDFKWESPDVEGLVKFLVEGKGFSEDRV 326
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E ++LL+L G+P+I AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVL 166
>gi|427786261|gb|JAA58582.1| Putative xp-g/rad2 dna repair endonuclease [Rhipicephalus
pulchellus]
Length = 778
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 356 GVITDDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY 413
G IT D D +L+GA+TVY+ DK HVL Y DI L REKL+ LA+L G DY
Sbjct: 4 GCITQDGDAFLYGAKTVYRKLCVEDKDPHVLSYKISDIESKLGLDREKLVALAVLAGCDY 63
Query: 414 TPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW 453
G++ VG TA+++L KF S S+ R ++W
Sbjct: 64 FSGVRNVGKETAIKLLNKFGDSG---------SLERLRDW 94
>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
Length = 381
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL L GVP+I AP EAEAQCA++ G T+D D FG+ + ++
Sbjct: 140 EAKQLLTLMGVPYIEAPCEAEAQCAAMVKGGLVYATATEDMDALTFGSNVLLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + EL ++ + L +L+G DYT ++G+GP A+E++ K +
Sbjct: 200 RKMPVQEIHLSKVLEGLELDQKAFVDLCILLGCDYTESIRGIGPKRAIELIKKHKSIEEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+N V+ +NW + R+L + +P++ + +
Sbjct: 260 LKNIDVKKYPPPENW-------NYEGARQL-----------------FEEPEVMDAAKIE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
L W PD +G+ +F +++ RV + ++K S
Sbjct: 296 LKWTDPDEEGMVKFLCGDKQFNEERVRNGVKKLLKSRS 333
>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
gi|317374889|sp|B3NP61.1|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
Length = 387
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + + + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW N K+ E +++P++ N
Sbjct: 260 LDNLDSSKYTVPENW----------------NYKV--------ARELFIEPEVANAESID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD +GL +F +S+ RV +MK
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFSEERVRNGAKKLMK 330
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 29/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ ++LL+L GVP I AP EAEAQCA+L V ++D D FGA ++ D S
Sbjct: 157 DCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGASKFLRHLMDPSS 216
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 217 RKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIEN- 275
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ R ++ DD+P + +P + ++ ++L
Sbjct: 276 ----ILENINR-------------------ERYQIPDDWPYQEARCLFKEPQVFSDDEQL 312
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
W PD + + + K SQ R++ P++
Sbjct: 313 DIKWSAPDEEAIEKIKTAKNKSSQGRLESFFKPVV 347
>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
Length = 381
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 31/233 (13%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EAQ A E +K KR V+++ E ++LL L G+P++ APGEAEA CA+L
Sbjct: 113 EAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + + LT E+ + L +L+G
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGC 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNV 471
DY ++G+GP A+E++ + + Q+ + +NWL K+ +KL
Sbjct: 233 DYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKE-------AQKL--- 282
Query: 472 KLNDDFPNVSVIEAYLKPD-INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+L+PD IN + +L W P+ + L +F + +++ R+
Sbjct: 283 --------------FLEPDVINPDDVELKWTEPNEEELVQFMCGEKQFNEERI 321
>gi|406865692|gb|EKD18733.1| DNA-repair protein rad2 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 460
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 30/209 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+ G+P+I+AP EAEAQCA L + ++D D F A + ++
Sbjct: 206 ECQRLLKCMGIPYIIAPTEAEAQCAVLARADKVYAAASEDMDTLCFDAPVLLRHLTFSEQ 265
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + P + + R + + L +L+G DY + VGP AL+I+ ++
Sbjct: 266 RKEPIQEIFLPKVLEGLGMDRAQFVDLCILLGCDYLDPIPKVGPNAALKIIREYG----- 320
Query: 439 NQNYIVESMRRFKNWL-AKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
++ +F + A K K + +D+P + + PD+
Sbjct: 321 -------TIEKFVAAVEAGKAK-----------YSIPEDWPYKDARDLFFNPDVTPADHA 362
Query: 498 ---LAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD+DGL +F + G+S++RV
Sbjct: 363 DCDFKWEAPDVDGLIKFLVEEKGFSEDRV 391
>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74605424|sp|Q6CLH4.1|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
Length = 381
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
EAQ+LL L G+P++VAP EAEAQCA L ++D D + + ++ F +
Sbjct: 138 EAQKLLSLMGIPYVVAPAEAEAQCAELAKSGKVFAAASEDMDTLCYQTPVLLRHLTFSEA 197
Query: 380 KSHVLRYTAPDIRY-YFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D+ Y +LT+ + I L +++G DY G++GVGPV AL+++ + ++
Sbjct: 198 RKLPIQEFDTDVIYNTLDLTQTQFIDLGIILGCDYCEGIKGVGPVNALKLIKEHGSLEA- 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
IVE + P+ ++ R++ +++PD I +
Sbjct: 257 ----IVEKFENGDISSGRWKIPEGWQFKEARDL--------------FMQPDVIPSEEVT 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P + L F + G++++R+
Sbjct: 299 LKWEEPKAEELIEFMVKEKGFNEDRI 324
>gi|118405170|ref|NP_001072959.1| flap endonuclease 1 [Gallus gallus]
gi|82082625|sp|Q5ZLN4.1|FEN1_CHICK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53129083|emb|CAG31359.1| hypothetical protein RCJMB04_5g12 [Gallus gallus]
Length = 381
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 31/233 (13%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EAQ A E +K KR V+++ E ++LL L G+P++ APGEAEA CA+L
Sbjct: 113 EAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + + LT E+ + L +L+G
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGC 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNV 471
DY ++G+GP A+E++ + + Q+ + +NWL K+ +KL
Sbjct: 233 DYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKE-------AQKL--- 282
Query: 472 KLNDDFPNVSVIEAYLKPD-INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+L+PD IN + +L W P+ + L +F + +++ R+
Sbjct: 283 --------------FLEPDVINPDDVELKWTEPNEEELVQFMCGEKQFNEERI 321
>gi|401624921|gb|EJS42958.1| rad27p [Saccharomyces arboricola H-6]
Length = 382
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EAQ+LL L G+P+I+AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++ K S
Sbjct: 198 KKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLM-KTHGSIEK 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
YI W K+ +D+P +L P+ I+ N
Sbjct: 257 IIEYIESGESSNAKW------------------KIPEDWPYKQARMLFLDPEVIDGNEVN 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
L W P+ L ++ ++ +S+ RV Q+ I +KK
Sbjct: 299 LKWSPPNEKELIQYLCDEKKFSEERV-QSGITRLKK 333
>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
gi|317374914|sp|C5FZT5.1|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
Length = 394
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P+I AP EAEAQCA L G ++D D F A + ++
Sbjct: 139 ECKRLLKLMGIPYIDAPTEAEAQCAVLAKEGKVFGAASEDMDTLCFAAPVLLRHLTFSEQ 198
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + + + L +L+G DY + VGP TAL+++ D
Sbjct: 199 RKEPILEIHLDKVLEGLGMEMTQFVDLCILLGCDYLDPIPKVGPNTALKMI-----RDHG 253
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ ++ P + + DD+P + + + PD+ +
Sbjct: 254 TLEKVVETI---------ESDPK-------KKYVIPDDWPYLQARDLFFNPDVRPADAPE 297
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL RF + G+S++RV
Sbjct: 298 CDFKWTAPDVEGLVRFLVEEKGFSEDRV 325
>gi|403216014|emb|CCK70512.1| hypothetical protein KNAG_0E02520 [Kazachstania naganishii CBS
8797]
Length = 380
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 29/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL L GVP++ APGEAEAQCA L G ++D D + + ++
Sbjct: 138 EAKKLLGLMGVPYVDAPGEAEAQCAELAKGGKVYAAASEDMDTLCYKTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V + ELT E+ + L +++G DY ++GVGPVTAL+++ + +
Sbjct: 198 KKEPVQEIDTLAVLDAMELTIEQFVDLGIMLGCDYCESIRGVGPVTALKLIREHKSLEG- 256
Query: 439 NQNYIVESMRRFKN--WLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
IV+ + N W K+ +++P V + +L PD+ +
Sbjct: 257 ----IVQYIDSGSNEKW------------------KVPENWPYKEVRKLFLDPDVTPASE 294
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P + L ++ + +S+ RV
Sbjct: 295 ITLKWEPPQEEELVKYLCGEKLFSEERV 322
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 258 LLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
L E+ KQ R ++++ + EA++LL L GVP++ APGEAEAQCA L G
Sbjct: 118 LAEKAKQERRLVKVSKEHNEEAKKLLGLMGVPYVDAPGEAEAQCAELAKG 167
>gi|170041796|ref|XP_001848636.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865395|gb|EDS28778.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 724
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 282 LLQLFGVPFIVAPGEAEAQCASLELGTDK-------KRRPYVSRKML-----EAQELLQL 329
++Q + F A + A C G DK KR P R + +ELL
Sbjct: 85 IIQRNQIQFRGARPKKAADCDKEATGGDKRKQDEPGKRAPEQKRNRFHHVLKQCEELLSS 144
Query: 330 FGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS--HVLRYT 387
G+ + APGEAEA CA L N G+I+ DSD + +G VY+NF ++ V Y
Sbjct: 145 MGLVCVQAPGEAEALCAHLNRENLVHGIISQDSDCFAYGGVRVYRNFCASQNGGSVEIYD 204
Query: 388 APDIRYYFELTREKLIQLALLVGSDYTP-GLQGVG 421
+IR +L +EK++ + +L G DY+P G+ GVG
Sbjct: 205 LENIRRVMDLGQEKIVVMGILSGCDYSPAGVPGVG 239
>gi|240103256|ref|YP_002959565.1| flap endonuclease-1 [Thermococcus gammatolerans EJ3]
gi|259645974|sp|C5A639.1|FEN_THEGJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|239910810|gb|ACS33701.1| Flap structure-specific endonuclease (fen) [Thermococcus
gammatolerans EJ3]
Length = 339
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 54/223 (24%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LL L GVP + AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAPRLVRNL----T 189
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTP-GLQGVGPVT 424
R P Y E + REKLI+LA+LVG+DY P G++G+GP
Sbjct: 190 ITGRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL I+ +R K+ L K K + D ++ E
Sbjct: 250 ALTIV------------------KRSKDPLKKYQK--------------DSDVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L P + T+ +L W PD +G+ +F ++ +S+ RV L
Sbjct: 278 FFLNPPV-TDDYELKWREPDEEGILKFLCDEHDFSEERVKNGL 319
>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
Length = 380
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA+ELL+L GVP+I AP EAEAQCA++ T+D D FG+ V ++ ++
Sbjct: 140 EAKELLRLMGVPYIEAPCEAEAQCAAMVKAGKIYATATEDMDALTFGSDIVLRHLTFSEA 199
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ + L++ + I +L+G DYT ++G+GP ++E++
Sbjct: 200 RKMPIQEIHLKIVLQELNLSQTEFIDFCILMGCDYTDSIRGIGPKKSIELI--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N+ S+ + + K P +D+ ++KP+I + + +
Sbjct: 251 -KNH--RSIEKILENIDKSKYPPP------------EDWNYEGARGLFVKPEISDPDSIE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L WG PD +G+ +F +S++RV
Sbjct: 296 LKWGEPDEEGMVKFLCGHRQFSEDRV 321
>gi|357159491|ref|XP_003578463.1| PREDICTED: flap endonuclease GEN-like 1-like [Brachypodium
distachyon]
Length = 639
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
K R +R + E ELL G+P + A GEAEA CA L H IT DSD +LFGA
Sbjct: 120 KGRNAAFTRYVEECVELLGYLGMPVLRATGEAEALCAQLNNEGHVDACITSDSDAFLFGA 179
Query: 370 RTVYKNF-FDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALE 427
+TV K + K Y DI L R++++ +ALLVGSD+ G+ G G TAL
Sbjct: 180 KTVIKVLRSNCKEPFECYNIADIESGIGLKRKQMVAMALLVGSDHDLHGVPGFGVETALR 239
Query: 428 ILAKF 432
+ F
Sbjct: 240 FVQLF 244
>gi|406860923|gb|EKD13979.1| hypothetical protein MBM_07656 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1010
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 33/225 (14%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK- 379
+ A++LL+LFG P APGEAEA+CA L+ V+++D D +FG+ +++ +
Sbjct: 102 MAAKQLLKLFGFPCHNAPGEAEAECALLQRKGIVDAVLSEDVDTLMFGSGITLRDWSSEG 161
Query: 380 ------KSHVLRYTAPDIRYYFE-LTREKLIQLALLVGSDY-TPGLQGVGPVTALEI--- 428
+HV + A + L RE +I +ALL G DY T GL G+G A +
Sbjct: 162 ARGSKAPTHVSLFDAKKTKEGSSGLDREGMILVALLSGGDYNTDGLPGIGIKVACQAARA 221
Query: 429 -----LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTH--LTRKLRNVKLNDDFPNVS 481
L S SD + + +++ L ++ + + + K +++ + D FP+
Sbjct: 222 GFGKELCGLSRSDE-------DGLATWRSKLTRELQTNENKVFKSKHKSMTIPDTFPSKE 274
Query: 482 VIEAYLKPDINT--NVQKLA----W-GTPDLDGLRRFAANKFGWS 519
++ Y P ++T V+KL W G D+ GLR + F WS
Sbjct: 275 ILGYYTHPVVSTAQKVEKLKSEIQWDGVVDVPGLREYVKEGFSWS 319
>gi|301117906|ref|XP_002906681.1| flap endonuclease 1 [Phytophthora infestans T30-4]
gi|317374909|sp|D0MY34.1|FEN1_PHYIT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|262108030|gb|EEY66082.1| flap endonuclease 1 [Phytophthora infestans T30-4]
Length = 389
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 32/227 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
+ +ELL+L GVP I AP EAEA CA+L G T+D D FG +Y+
Sbjct: 146 DCKELLRLMGVPHITAPCEAEASCAALAKGGRVYAAGTEDMDALTFGVPVLYRRLTVSPA 205
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK +L E+T E+ + L +L G DY ++GVGP A + +
Sbjct: 206 KKIPILEIRLERALQELEMTHEQFVDLCILCGCDYCDSIRGVGPKKAYAGIKEH------ 259
Query: 439 NQNYIVESMRRFKNWLAKKNK------PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-I 491
+S+ F L +KNK PD L N + N E ++KP+ +
Sbjct: 260 ------KSIENFLEVL-QKNKSKGVVIPDEWLGE-------NPIYKNAR--EMFIKPEVV 303
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ ++ W P L F K G+ ++RV + + K S +S
Sbjct: 304 DAKETEIKWRDPQETELVDFLVKKHGFQEDRVLSAITRLKKSKSTQS 350
>gi|449283444|gb|EMC90086.1| Flap endonuclease 1 [Columba livia]
Length = 382
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P++ APGEAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKKLLTLMGIPYLEAPGEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASET 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I LT E+ + L +L+G DY ++G+GP A+E++ + +
Sbjct: 200 KKLPIQEFHLNRILQDLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIKEHKTIEKI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
Q + +NWL K+ +KL +L+PD ++ + +
Sbjct: 260 VQQIDTKKYPLPENWLHKE-------AQKL-----------------FLEPDVVDPDAVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P+ + L RF + +++ R+
Sbjct: 296 LKWTEPNEEELVRFMCGEKQFNEERI 321
>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
Length = 327
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 312 RRPYVSRKMLEA-QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 370
R +S++++E+ +ELL G+P+I AP E EAQ L V + D D LFGA
Sbjct: 123 RASRISKEIIESSKELLDAMGIPYIQAPNEGEAQAVYLVKNGDAWAVASQDYDCLLFGAP 182
Query: 371 TVYKNFFDKKSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
V +N L D I ++RE+LI +ALLVG+D+ PG++G+G LE++
Sbjct: 183 RVIRNLAISSDINLELLELDKILKKLGISREQLIDIALLVGTDFNPGVKGIGAKRGLELI 242
Query: 430 AKFS 433
KF
Sbjct: 243 KKFG 246
>gi|440633913|gb|ELR03832.1| flap endonuclease-1 [Geomyces destructans 20631-21]
Length = 395
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R VSR+ E Q+LL+L G+P+I+AP EAEAQCA L ++D D F +
Sbjct: 128 RRTVRVSRQHNAECQQLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDS 187
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ +K + + + R++ + L +L+G DY + +GP TAL
Sbjct: 188 PILIRHLTFSEARKEPIQEIHVDKVLEGLGMDRKQFVDLCILLGCDYLDPIPKIGPNTAL 247
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + S+ + W+ K + +D+P E +
Sbjct: 248 KMIREHG------------SLEKVVEWINNDGK---------NKYTIPEDWPYADARELF 286
Query: 487 LKPDINTNVQK---LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
PD+ W PD++GL +F + +S+ RV + + K +
Sbjct: 287 FNPDVRPADHAECDFKWEQPDVEGLIKFLVVENAFSEERVRGGIAKLQKNL 337
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R ++ Q + E Q+LL+L G+P+I+AP EAEAQCA L
Sbjct: 125 KFSRRTVRVSRQHNAECQQLLKLMGIPYIIAPTEAEAQCAVL 166
>gi|326482509|gb|EGE06519.1| hypothetical protein TEQG_05519 [Trichophyton equinum CBS 127.97]
Length = 768
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 309 DKKRRPYVSRKMLEAQ-----ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
D KR VS+ AQ +L++LF P +APGEAEA+CA L+ V+++D D
Sbjct: 85 DYKRGRLVSKNAAAAQIELSRKLIELFSYPCHMAPGEAEAECAKLQQAGVVDAVMSNDVD 144
Query: 364 IWLFGARTVYKNF-------FDKKSHVLRYT--APDIRYYFELTREKLIQLALLVGSDYT 414
+FG++ N+ +HV Y A D L + ++ +ALL G DY+
Sbjct: 145 ALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTKGMVLVALLSGGDYS 204
Query: 415 P-GLQGVGPVTALEIL-AKFSP-------------SDSPNQNYIVESMRRFKNWLAKKNK 459
P G+ GP A+EI A F S + + E R + L ++
Sbjct: 205 PAGVALCGPKLAVEIARAGFGEDLFKITQDLLSGRSTKKAEEALCEWRERLQYEL--QSN 262
Query: 460 PDTHLTRKLRNVKLNDDFPNVSVIEAYLKP------DINTNVQKLAWGTP-DLDGLRRFA 512
+ K + VK+ DFPN++ + + + P D++T + WG D+D LR F
Sbjct: 263 ESGYFKTKHKAVKIPADFPNLAALRSCVDPVTSSLKDMDTLRRLDIWGRRVDVDRLRAFV 322
Query: 513 ANKFGW 518
GW
Sbjct: 323 GRYLGW 328
>gi|345569735|gb|EGX52564.1| hypothetical protein AOL_s00007g552 [Arthrobotrys oligospora ATCC
24927]
Length = 390
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E + LL+L G+P++ AP EAEAQCA L ++D D F + ++ F ++
Sbjct: 140 ECKRLLKLMGIPYLDAPCEAEAQCAILAKSGKVYAAASEDMDTLCFETPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + ++TRE+ I L +L+G DY + VGP TAL+++ ++ +
Sbjct: 200 RKQPIQEIHLDRVMAGLDMTREQFIDLCILLGCDYCDTIPKVGPTTALKLIRQYKSIEG- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
++E++ + K K+ D FP E + P+ + +
Sbjct: 259 ----VIENLDKDK-------------------YKVPDYFPYQDARELLMNPEVVPADECD 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD +GL F G++++RV
Sbjct: 296 FKWDAPDTEGLVDFLVGGKGFNEDRV 321
>gi|302665075|ref|XP_003024151.1| Rad2-like endonuclease, putative [Trichophyton verrucosum HKI 0517]
gi|291188195|gb|EFE43540.1| Rad2-like endonuclease, putative [Trichophyton verrucosum HKI 0517]
Length = 768
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 108/246 (43%), Gaps = 38/246 (15%)
Query: 309 DKKRRPYVSRKMLEAQ-----ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
D KR VS+ AQ +L++LF P +APGEAEA+CA L+ V+++D D
Sbjct: 85 DYKRGRLVSKNAAAAQIELSRKLIELFSYPCHMAPGEAEAECAKLQQAGVVDAVMSNDVD 144
Query: 364 IWLFGARTVYKNF-------FDKKSHVLRYT--APDIRYYFELTREKLIQLALLVGSDYT 414
+FG++ N+ +HV Y A D L +I +ALL G DY+
Sbjct: 145 ALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTRGMILVALLSGGDYS 204
Query: 415 P-GLQGVGPVTALEIL-AKFSP-------------SDSPNQNYIVESMRRFKNWLAKKNK 459
P G+ GP A+EI A F S + + E R + L ++
Sbjct: 205 PAGVALCGPKLAVEIARAGFGEDLLEITQDLLSGRSTKKAEEALCEWRERLQYEL--QSN 262
Query: 460 PDTHLTRKLRNVKLNDDFPNVSVIEAYLKP------DINTNVQKLAWGTP-DLDGLRRFA 512
+ K + VK+ DFPN++ + + + P ++N + WG D+D LR F
Sbjct: 263 ESGYFKTKHKAVKIPADFPNLAALRSCVHPVTSSLKEMNALRRSDIWGRRIDVDRLRAFV 322
Query: 513 ANKFGW 518
GW
Sbjct: 323 GRYLGW 328
>gi|118575473|ref|YP_875216.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
gi|166973696|sp|A0RU95.1|FEN_CENSY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|118193994|gb|ABK76912.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
Length = 340
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 123/275 (44%), Gaps = 66/275 (24%)
Query: 292 VAPGEAEAQCASLELGTDKKRRPYVSRK-------MLEAQELLQLFGVPFIVAPGEAEAQ 344
V G A A+++ G R Y + + +++++L+LFG+P+I AP E EA
Sbjct: 97 VKKGAAVKYAAAVDAGNMDDARKYAQQTTSMRDGMVDDSKQILKLFGIPYIDAPSEGEAT 156
Query: 345 CASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYY---------- 394
A L + D D LFGA+ + +NF ++ R P+ Y
Sbjct: 157 AAYLTQTGDAYASASQDFDSVLFGAKRLVRNF----TNSGRRKIPNRNMYVDVQPEIIET 212
Query: 395 ------FELTREKLIQLALLVGSDYTP-GLQGVGPVTALEILAKFSPSDSPNQNYIVESM 447
+LTRE+L+ + +L+G+D+ P G + +GP TAL+++
Sbjct: 213 EKTLTTLDLTREQLVDVGILIGTDFNPDGFERIGPKTALKLV------------------ 254
Query: 448 RRFKNWLAKKNKPDTHLTRKLRNV-KLNDDFPNVSVIE---AYLKPDINTNVQKLAWGTP 503
H +L ++ ++ D+ +VS E +L+P+ N++ + +G
Sbjct: 255 ---------------HEHGRLEDIPRIQDELGSVSYAEIRKIFLEPESPGNIE-IEFGAT 298
Query: 504 DLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
D DG+ ++ + +S++RV L + + + +RS
Sbjct: 299 DYDGITKYLVGERSFSEDRVAAALNRLRRALEKRS 333
>gi|303279240|ref|XP_003058913.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460073|gb|EEH57368.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 360
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 33/223 (14%)
Query: 311 KRRPYVSRKMLEAQELLQL---FGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
KR V+R+ ++QE++QL G+P AP EAEA CA+L ++D D F
Sbjct: 129 KRTVRVTRQ--QSQEVMQLARLMGLPVFEAPCEAEASCAALCKAGLVYAAASEDMDTLCF 186
Query: 368 GARTVYKNFFDKKSH---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVT 424
+ +N S +L + I ++T E+ I + +L G DY ++GVGPV
Sbjct: 187 ACPKLARNLMSPASQGKPILEFDYEKILTELDMTWEQFIDVCILCGCDYCDSIKGVGPVK 246
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
A+ ++ K ++ Q+ E + +D+P E
Sbjct: 247 AVSLIKKHGNIETLLQHLDTE------------------------KYPVPEDWPYKEARE 282
Query: 485 AYLKPD-INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQT 526
+ PD +NT+ +L W PD +G+ F + + + RV T
Sbjct: 283 LFKHPDVVNTDGLELKWTAPDEEGIVAFLVGEKQFGEERVRNT 325
>gi|320202935|ref|NP_001188509.1| flap endonuclease-1 [Bombyx mori]
gi|268044461|gb|ACY92094.1| flap endonuclease-1 [Bombyx mori]
Length = 380
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L GVP + AP EAEAQCA+L T+D D FGA + ++
Sbjct: 140 EAKQLLKLMGVPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALTFGAPVLLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + ++ EL + + I L +L+G DY ++GVGP A++++ + D
Sbjct: 200 RKMPVQEFHLNNVLQGLELKQNEFIDLCILLGCDYCGSIRGVGPKRAIDLIRQHRTLDEV 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N E + +W D R L +++P++ + +
Sbjct: 260 LKNIDTEKYQPPTDW-------DYERARSL-----------------FMEPEVADPKDIE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL +F +++ RV
Sbjct: 296 LKWTDPDEEGLVKFLCGDRQFNEERV 321
>gi|366994432|ref|XP_003676980.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
gi|342302848|emb|CCC70625.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
Length = 379
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ APGEAE+QCA L ++D D + + ++
Sbjct: 138 EAKKLLELMGIPYVNAPGEAESQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ I L +++G DY ++GVGPVTAL+++ + +
Sbjct: 198 KKEPIQEINTEQVLQGLDLTLEQFIDLGIMLGCDYCDNIRGVGPVTALKLIKEHGSLEKI 257
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+ +ES K W K+ +++P E +LKPD I+ +
Sbjct: 258 VE--FIESDEGNKKW------------------KVPENWPYKEARELFLKPDVIDGDEIT 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L + + +++ RV
Sbjct: 298 LKWQPPKEQELIDYLCGEKLFNEERV 323
>gi|383320867|ref|YP_005381708.1| flap endonuclease 1 [Methanocella conradii HZ254]
gi|379322237|gb|AFD01190.1| flap endonuclease 1 [Methanocella conradii HZ254]
Length = 339
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 47/220 (21%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN------ 375
+++ LL G+PFIVAP E EAQ + + V + D D LFGA + +N
Sbjct: 133 DSKTLLGYMGIPFIVAPSEGEAQASCMVSKGAADYVGSQDYDSLLFGAPRMVRNVTITGR 192
Query: 376 --------FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
+ D K ++ + ++TRE+LI + +LVG+D+ PG+ VGP TAL+
Sbjct: 193 RKVPRRNIYVDVKPEIVELK--ETLETLDITREQLIDIGILVGTDFNPGIYKVGPKTALK 250
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL 487
L KK+K + +L N + + E +L
Sbjct: 251 --------------------------LVKKHKNMQEVFGELEQTIENYE----EIKEFFL 280
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
P + T+ +AWG P+ ++ F ++ +SQ+RV++ +
Sbjct: 281 HPPV-TDDYHIAWGRPEPAKIKHFLCDEHSFSQDRVEKVV 319
>gi|212526840|ref|XP_002143577.1| Rad2-like endonuclease, putative [Talaromyces marneffei ATCC 18224]
gi|210072975|gb|EEA27062.1| Rad2-like endonuclease, putative [Talaromyces marneffei ATCC 18224]
Length = 863
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 131/302 (43%), Gaps = 37/302 (12%)
Query: 256 QLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPY 315
QL RG Q T+ ++ R LL L P V G+ Q + G R Y
Sbjct: 45 QLQAGRGGQNPELRTLFFRLVR----LLALPIHPLFVYDGK---QKPPFKRGKATTGRSY 97
Query: 316 VSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
S ++ ++ L+ LF P APGEAEA+CA L+ V+++D D +FG+
Sbjct: 98 GSAPIINLSKILIDLFKFPRHDAPGEAEAECARLQQAGVVDAVMSNDVDTLMFGSGLTVM 157
Query: 375 NFFDKKS-------HVLRYTAP---DIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423
NF + S H+ YT D+ +LTR ++ A+L G DY P G+ GP
Sbjct: 158 NFSKEGSTGTSAATHIDCYTTKTQLDVEANVKLTRAGMVLFAMLSGGDYLPSGVTKCGPG 217
Query: 424 TALEILAKFSPSD-----SPNQNYIVESMRRFKNWLAKK--NKPDTHLTRKLRNVKLNDD 476
A EI D N++ + + ++ L + + K + V++ D
Sbjct: 218 LAGEIAKAGFGEDLFEIIYSNEDEVEAKLAEWRERLQYELDENESGYFQSKHKAVRIPDT 277
Query: 477 FPNVSVIEAYLKPDINT--NVQKL------AWGTPDLDG--LRRFAANKFGWSQNRVDQT 526
FP+ ++ Y KP ++T ++KL AW +++ LR F +N F W +
Sbjct: 278 FPDRQILSFYAKPIVSTEREIEKLRQRLVEAWDH-EINALELRNFVSNYFDWKYRSGARK 336
Query: 527 LI 528
LI
Sbjct: 337 LI 338
>gi|388583596|gb|EIM23897.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 433
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--- 377
+E ++LL+L G+P + AP EAEAQCA L G ++D D FGA + ++
Sbjct: 140 MECRKLLRLMGIPVVEAPSEAEAQCAELVRGGKVWAAGSEDMDTLTFGAPILLRHLTFSE 199
Query: 378 DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
KK + Y + E+ RE+ L +L+G DY ++GVGP TAL+++ ++ D
Sbjct: 200 QKKEPISHYYLEEALTGLEMGREQFTDLCILLGCDYLEPVKGVGPSTALKLIREYGSLD 258
>gi|71652611|ref|XP_814958.1| flap endonuclease-1 (FEN-1) [Trypanosoma cruzi strain CL Brener]
gi|122023721|sp|Q4DKQ5.1|FEN1_TRYCC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|70879977|gb|EAN93107.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
Length = 393
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ LE A++LLQL G+P + AP EAEAQCA L V T+D D FGA
Sbjct: 132 KRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKKKAWAVATEDMDALTFGA 191
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ KK + + +I LT + I L +L+G DY P + G+GP A
Sbjct: 192 PVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVPKIPGIGPQKAW 251
Query: 427 EILAK 431
E + K
Sbjct: 252 EGIKK 256
>gi|317374933|sp|C5GPA7.2|FEN1_AJEDR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317374934|sp|C5JVG7.2|FEN1_AJEDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F + + ++
Sbjct: 140 ECKKLLKLMGVPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 200 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ ++ P T + +D+P E + PD+
Sbjct: 255 SLEKVVEAI---------QSDPKKKYT-------IPEDWPYKDARELFFDPDVRKADHPD 298
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 299 CNFKWEAPDVEGLVKFLVEEKAFSEDRV 326
>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
gi|166973699|sp|A6UX46.1|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
Length = 326
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 41/216 (18%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
++LL+L G+P+I AP E EAQCA + V++ D D L+GA +N
Sbjct: 135 CKKLLKLMGIPYIDAPSEGEAQCAHMIKNGDAYCVVSQDYDALLYGAPRTVRNITASNKP 194
Query: 383 VLRYTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALEILAKFSPSDSPNQN 441
+ DI +++ + LI +A+L+G+DY G++G+GP AL I+
Sbjct: 195 LELMEIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTII------------ 242
Query: 442 YIVESMRRFKNWLAKKNKPDTHLTRKLRNVK-LNDDFPNVSVIEAYLKPDINTNVQKLAW 500
KNK + + N + + + F N V++ Y K DI
Sbjct: 243 ---------------KNKKMNEYIKDIENYEEIKNIFKNPKVVD-YTKEDI-------KL 279
Query: 501 GTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
+P+++GL+ F + +S NR+ +P +KK+ +
Sbjct: 280 KSPNIEGLKEFLIEENDFSPNRI----LPSIKKLDK 311
>gi|452981413|gb|EME81173.1| hypothetical protein MYCFIDRAFT_189405 [Pseudocercospora fijiensis
CIRAD86]
Length = 393
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK--NFFDK 379
EAQ LL+L GVP+I+AP EAEAQCA + ++D D F + + + F ++
Sbjct: 140 EAQRLLKLMGVPYIIAPTEAEAQCAVIARAGKVYAAASEDMDTLTFASPVLLRKLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + ++ + + I L +L+G DY ++G+GP AL ++ +
Sbjct: 200 RKEPIQEIHLDRVLEGLDMDQNQFIDLCILLGCDYLDPVKGIGPKNALALI-----KEHK 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
N +V + K L +D+P + +PD+
Sbjct: 255 NLEGVVA------------------MIEKTGKYTLPEDWPYQDARVLFQEPDVRQADHPE 296
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK--KISQRS 538
W PD+DGL +F + G+S++RV + K K SQ+S
Sbjct: 297 CDFKWENPDVDGLVKFLVEEKGFSEDRVRSGAARLQKNLKSSQQS 341
>gi|395328084|gb|EJF60479.1| hypothetical protein DICSQDRAFT_162059 [Dichomitus squalens
LYAD-421 SS1]
Length = 1162
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF------ 377
+EL++LFG+ + A GEAEA+ A L V+TDD D +FGA+TV KNF
Sbjct: 128 KELIKLFGMDWREAKGEAEAELAFLNQVGAIDAVVTDDIDCLIFGAQTVIKNFGLDLSGN 187
Query: 378 -----------DKKSHVLRYTAPDIRYY--FELTREKLIQLALLVGSDYTPGLQGVGPVT 424
K+H YTA DIR + LTR+ LI AL+ G DY G+ GP
Sbjct: 188 KGNPPKNADGNTSKAHAHVYTADDIRRHPDVRLTRDGLILFALMSGGDYDTGIFRCGPAM 247
Query: 425 ALEILAKFSPSDSPNQNY--IVESMRRFKNWLAKKN-------KPDTH--LTRKLRNVKL 473
A +A+ + Q Y ES F WL + + ++H + R N +
Sbjct: 248 A-HAMARSGFGEQLVQAYERYGESG-HFTIWLEQWRTELQAAIRANSHGLMARGAPNFVI 305
Query: 474 NDDFPNVSVIEAYLKPDINTNVQKLAWGTP------DLDGLRRFAANKF 516
++P V ++ Y++P + + G P DL GL F F
Sbjct: 306 PQEWPKVKTLQLYVEPVTSASNGGNCGGPPRDREPLDLPGLAWFCEKHF 354
>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
dendrobatidis JAM81]
Length = 388
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 28/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P + AP EAEAQCA+L ++D D FGA + ++
Sbjct: 141 ECRRLLKLMGIPIVEAPCEAEAQCAALAKAGKVYAAGSEDMDTLTFGAPVLLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + + ++ I L +L+G DY ++G+GP A++++ + ++
Sbjct: 201 KKIPISEFNTQKVLEGLNFSHDEFIDLCILLGCDYCDSIRGIGPHRAVQLMKEHRTIEN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
I++S+ + K K+ +++P + + +PD+ + +
Sbjct: 260 ----IIKSIDKTK-------------------YKVPENWPFKEARQLFKEPDVLDPATVE 296
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQ 525
L W PD GL +F + G+S++RV +
Sbjct: 297 LNWTKPDEAGLLQFLVTEKGFSEDRVKK 324
>gi|261193829|ref|XP_002623320.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239588925|gb|EEQ71568.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239613756|gb|EEQ90743.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ER-3]
Length = 406
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F + + ++
Sbjct: 151 ECKKLLKLMGVPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 210
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 211 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 265
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ ++ P T + +D+P E + PD+
Sbjct: 266 SLEKVVEAI---------QSDPKKKYT-------IPEDWPYKDARELFFDPDVRKADHPD 309
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 310 CNFKWEAPDVEGLVKFLVEEKAFSEDRV 337
>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
gi|317374878|sp|A8QCH0.1|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
Length = 378
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ L+ L G+P + AP EAEAQCA+L +++D D FG+ + +
Sbjct: 140 EAKRLVTLMGIPVLDAPCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V + F + + + L +L+G DY ++G+GP A E++ K+ ++
Sbjct: 200 KKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRGIGPKKAFELIKKYECIEN- 258
Query: 439 NQNYIVESMRRFK-----NWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-N 492
++E++ + K +W K+ R+L +L+PD+ N
Sbjct: 259 ----VLETINQTKYPIPQDWQYKE-------ARRL-----------------FLEPDVMN 290
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+L W PD++G+ +F + ++++RV +L + K
Sbjct: 291 CENLELVWKEPDVEGIVQFLCVEKSFNEDRVRGSLTRMQK 330
>gi|82617225|emb|CAI64131.1| DNA repair protein [uncultured archaeon]
gi|268322957|emb|CBH36545.1| flap structure-specific endonuclease [uncultured archaeon]
Length = 330
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 53/230 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A+ LL L G+P++ AP E EAQ A + + V + D D LFGA +N
Sbjct: 133 DAKTLLTLMGIPYVQAPSEGEAQAAYMVQNGDAELVSSQDYDSLLFGAPITIRNL----- 187
Query: 382 HVLRYTAPDIRYYFELT------------REKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+AP + EL RE+LI +A+LVG+D+ G++GVG AL+++
Sbjct: 188 -----SAPRKKAKLELVELKALEDTQGIIREELIDIAILVGTDFNEGIKGVGVKRALKLI 242
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
K + +++ +N+ L R+L +L P
Sbjct: 243 KKHHSIEKIISQAAIDTSAGIENY---------ELVREL-----------------FLHP 276
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV----DQTLIPIMKKIS 535
D+ T+ +L WGT D ++ +S+ RV ++ LIP MK+ S
Sbjct: 277 DV-TDSYELKWGTLDAGKIKELLCEVHDFSEERVSKALEKILIPKMKQKS 325
>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74830896|sp|Q57WW6.1|FEN1_TRYB2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376199|sp|C9ZKW4.1|FEN1_TRYB9 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
DAL972]
Length = 393
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 27/217 (12%)
Query: 311 KRRPYVSR-KMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V R +M E + LL+L G+P + AP EAEAQCA L N V T+D D FG+
Sbjct: 132 KRMVRVGRDQMEEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALAFGS 191
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R + ++ KK + Y +I + ++ I L +L+G DY P + G+GP A
Sbjct: 192 RVMLRHLTYGEAKKRPIAEYHLDEILEASGFSMQQFIDLCILLGCDYVPRISGIGPHKAW 251
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
E + K+ ++ +ES+ + + P+ + RN L P V+
Sbjct: 252 EGIKKYGSLEA-----FIESLDGTRYVV-----PEEFNYKDARNFFLE---PEVT----- 293
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
P ++Q + PD +GL +F ++ +S+ RV
Sbjct: 294 --PGEEIDIQ---FREPDEEGLIKFLVDEKLFSKERV 325
>gi|392589119|gb|EIW78450.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 386
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 18/168 (10%)
Query: 337 APGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKKSHVLR-YTAPDIRYY 394
APGEAEA+ A+L V+T DSD +LFGA+ V + + + + ++ YT +
Sbjct: 154 APGEAEAELAALNGLGVIDAVMTTDSDAFLFGAKCVLRMYVINHDPYTIQLYTQERLTNT 213
Query: 395 FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS----------PSDSPNQNYIV 444
+L+R L+ +ALLVG DY PGL G G TA LA++ +D PN + +
Sbjct: 214 VDLSRGGLVLMALLVGGDYHPGLPGCGTATAYA-LAQYGFGDDLVDAMLHADQPNLSAFL 272
Query: 445 ESMRRFKNWLAKKNKPDTHLTRKLR---NVKLNDDFPNVSVIEAYLKP 489
++R + A N L R R + L +FPNV+V+ AY+ P
Sbjct: 273 ATLRGQISHAA--NVDPKGLFRSKRPSISASLTREFPNVNVLNAYMHP 318
>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
gi|317374913|sp|D2V434.1|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
Length = 387
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
+ ++LL+L GVP + APGEAEAQCA L G T+D D + + ++
Sbjct: 140 DGKKLLRLMGVPVVEAPGEAEAQCAELCKGGLVYATATEDMDALTYATPVLARHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + +T + +T ++ I + +L G DYT ++G+GP AL ++ K+
Sbjct: 200 RKQPIQEFTFKQVIEGLGVTVDQFIDICILCGCDYTDSIKGIGPKKALAMIKKYG----- 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN---V 495
+N L KN H + +FP V + PD+ + V
Sbjct: 255 ----------NIENLL--KNIEGKHY-------QAPSEFPYEEVRNIFKNPDVTPSSELV 295
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ W PD +GL F + + + RV
Sbjct: 296 DTMKWTEPDEEGLIEFLVKEKQFDEERV 323
>gi|317374926|sp|Q0CBS0.2|FEN1_ASPTN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F A + ++
Sbjct: 140 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + ++ R K I L +L+G DY + VGP TAL+++ D
Sbjct: 200 RKEPIQEIHLSRALEGLDMDRAKFIDLCILLGCDYLEPIPKVGPNTALKLI-----RDHG 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+ +VE + +N P + + +D+P E +L PD+ N
Sbjct: 255 SLEKVVEYI---------QNDPK-------KKYVIPEDWPYQDARELFLHPDVRDANDPE 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL F G++++RV
Sbjct: 299 CDFKWEAPDIEGLVEFLVKDKGFNEDRV 326
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E ++LL+L G+P+I AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVL 166
>gi|115402747|ref|XP_001217450.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
gi|114189296|gb|EAU30996.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
Length = 402
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F A + ++
Sbjct: 147 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 206
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + ++ R K I L +L+G DY + VGP TAL+++ D
Sbjct: 207 RKEPIQEIHLSRALEGLDMDRAKFIDLCILLGCDYLEPIPKVGPNTALKLI-----RDHG 261
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+ +VE + +N P + + +D+P E +L PD+ N
Sbjct: 262 SLEKVVEYI---------QNDPK-------KKYVIPEDWPYQDARELFLHPDVRDANDPE 305
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL F G++++RV
Sbjct: 306 CDFKWEAPDIEGLVEFLVKDKGFNEDRV 333
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E ++LL+L G+P+I AP EAEAQCA L
Sbjct: 132 KFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVL 173
>gi|82231650|sp|Q5I4H3.1|FEN1_XIPMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57639537|gb|AAW55636.1| flap endonuclease-1 [Xiphophorus maculatus]
gi|57639539|gb|AAW55637.1| flap endonuclease-1 [Xiphophorus maculatus]
Length = 380
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 36/219 (16%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ ++LL L GVP+I AP EAEA CA+L T+D D FG + ++ ++
Sbjct: 140 DCKKLLTLMGVPYIEAPCEAEASCAALVKEGKVFATATEDMDGLTFGTNVLLRHLTASEA 199
Query: 382 HVLRYTAPDIRYYFE-------LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
L P ++F LT E+ I L +L+G DY ++G+GP A++++ +
Sbjct: 200 KKL----PVQEFHFNRILQDIGLTSEQFIDLCILLGCDYCGTIKGIGPKRAIDLIRQHGS 255
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INT 493
+ I+E++ +K P+ L ++ RN+ +LKP+ +++
Sbjct: 256 IEE-----ILENID-----TSKHPAPEDWLYKEARNL--------------FLKPEVVDS 291
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ L W PD + L +F ++ +S++R+ +MK
Sbjct: 292 STVDLKWREPDEEALIQFMCSEKQFSEDRIRNGCKKMMK 330
>gi|401825763|ref|XP_003886976.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
gi|392998133|gb|AFM97995.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 309 DKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
DK++ + E + LL L G+PF AP EAEA CA L GV T+D D FG
Sbjct: 126 DKRKTKVTGVHVEECKRLLGLMGIPFETAPSEAEAYCAFLCRKRIVYGVATEDMDSLTFG 185
Query: 369 ARTVYKNFFDKKSHVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ V +NF +S L ++R E L + + I L +L+G DY L+G+GP A
Sbjct: 186 SPVVLRNFSGAQSKKLPVVEYNLRQLLEDLSLEQNEFIDLCILLGCDYCDTLKGIGPKKA 245
Query: 426 LEILAK 431
L ++ K
Sbjct: 246 LGLIRK 251
>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
gi|317374895|sp|B4QIG6.1|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
Length = 385
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + + + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW N K+ E +++P++ N +
Sbjct: 260 LDNLDSSKYTVPENW----------------NYKV--------ARELFIEPEVANADSID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD +GL +F +++ RV +MK
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMK 330
>gi|367034598|ref|XP_003666581.1| hypothetical protein MYCTH_2311387 [Myceliophthora thermophila ATCC
42464]
gi|347013854|gb|AEO61336.1| hypothetical protein MYCTH_2311387 [Myceliophthora thermophila ATCC
42464]
Length = 894
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A+ L++LFG APGEAEA+CA L+ V+++D D +FG R +N+ + S
Sbjct: 104 AKRLIRLFGFTIHEAPGEAEAECAMLQQKGIVDAVLSEDVDTIMFGCRKTLRNWSAEGSK 163
Query: 382 ------HVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI----- 428
HV + A I +L RE ++ +AL+ G DY P G+ G G A E
Sbjct: 164 GSKTPTHVSMFDADAIAAGPTKLDREGMVLVALMSGGDYLPEGVPGCGVKVACEAARAGF 223
Query: 429 ---LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
L + +D ++ + R + L + N+ TR + + + +DFPN+ ++
Sbjct: 224 GRDLCRIKRAD---RDGLAAWKARLLHEL-RTNESGFFRTRH-KALHIPEDFPNMEILRY 278
Query: 486 YLKPDINTNV-------QKLAWGTPDLDGLRRFAANKFGW 518
Y P ++ + LA G D+ GLR F F W
Sbjct: 279 YTHPVVSREAAVDRVKREFLAAGNVDIVGLREFTRQTFDW 318
>gi|326470331|gb|EGD94340.1| flap endonuclease [Trichophyton tonsurans CBS 112818]
Length = 376
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEAQCA L G ++D D F A + ++
Sbjct: 121 ECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQ 180
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + + + L +L+G DY + VGP TAL+++ D
Sbjct: 181 RKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMI-----RDHG 235
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ ++ P + + +D+P + E + PD+ +
Sbjct: 236 TLEKVVEAI---------ESDPK-------KKYVIPEDWPYLQARELFFNPDVRPADAPE 279
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL RF + G+S++RV
Sbjct: 280 CDFKWSAPDVEGLVRFLVEEKGFSEDRV 307
>gi|389637772|ref|XP_003716519.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
gi|317374924|sp|A4QS18.2|FEN1_MAGO7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|351642338|gb|EHA50200.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
Length = 394
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 22/205 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I+AP EAEAQCA L ++D D F + + ++
Sbjct: 140 ECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + ++ R++ + L +L+G DY + VGP TAL+++ + ++
Sbjct: 200 RKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLET- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
IVE M++ + K P+ R++ N P V + PD N
Sbjct: 259 ----IVEKMKKGE---LKYTVPEDWPFEDARDLFFN---PAVHPAD---HPDCN-----F 300
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL ++ + G+S++RV
Sbjct: 301 KWEKPDVEGLVKYLVTEKGFSEDRV 325
>gi|374628642|ref|ZP_09701027.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
gi|373906755|gb|EHQ34859.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
Length = 333
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 44/234 (18%)
Query: 316 VSRKMLEA-QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
V R+++++ + LL L G+P++ AP E EAQ A + ++ D D LFGA + +
Sbjct: 128 VDREIIDSSKRLLSLMGIPYLDAPSEGEAQAAFMVSEGIVDYSVSQDYDSLLFGAEKLVR 187
Query: 375 NFFDKKSHVLR----------YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVT 424
N + +R + ++ E+TRE+L+++ +L+G+D+ G++G+GP
Sbjct: 188 NLTVSRKRKIRGRTITVNPETISLDEVLSGLEITREQLVEIGILIGTDFNSGIRGIGPKK 247
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL+I+ D +N + ESM F ++L K DF
Sbjct: 248 ALKIV-----RDGTFENILSESMPEF-DYLPVK------------------DF------- 276
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+L P + NV +G D G+ F + G+S+ R++ L I Q++
Sbjct: 277 -FLNPPVKENVIP-DYGAVDGAGVTEFLCVEHGFSKERINTVLEKINAGAGQKT 328
>gi|365759754|gb|EHN01528.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 23/215 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EAQ+LL L GVP+I+AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAQKLLGLMGVPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++
Sbjct: 198 KKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLMRTHG----- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
S+ + ++ + +T K+ +D+P +L P+ I+ N
Sbjct: 253 -------SIEKIIEFIESEESSNTKW-------KIPEDWPYKQARMLFLDPEVIDGNEID 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W P L + ++ +S+ RV + + K
Sbjct: 299 LKWSPPKEKELVEYLCDEKKFSEERVKSGIARLKK 333
>gi|327350064|gb|EGE78921.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ATCC 18188]
Length = 402
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F + + ++
Sbjct: 147 ECKKLLKLMGVPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 206
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + VGP TAL+++ D
Sbjct: 207 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLI-----RDHG 261
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ ++ P T + +D+P E + PD+
Sbjct: 262 SLEKVVEAI---------QSDPKKKYT-------IPEDWPYKDARELFFDPDVRKADHPD 305
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 306 CNFKWEAPDVEGLVKFLVEEKAFSEDRV 333
>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
gi|317374894|sp|B4HTA1.1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
Length = 385
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + + + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW N K+ E +++P++ N +
Sbjct: 260 LDNLDSSKYTVPENW----------------NYKV--------ARELFIEPEVANADSID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD +GL +F +++ RV +MK
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMK 330
>gi|297816098|ref|XP_002875932.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
gi|297321770|gb|EFH52191.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 30/238 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EA+ + G+ + EAEAQCA L + + DSDI+LFGA+TVY+ +
Sbjct: 124 EAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSSDSDIFLFGAKTVYREICLGEG 183
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI+ L R LI LALL+GSDY+ G++G+ A E++ S +
Sbjct: 184 GYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVR------SIGE 237
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTR----------KLRNVKLNDDFPN-----VSVIEA 485
N I+E + A+K + R L V N+ P VI+A
Sbjct: 238 NVILEKVASEGLAFAEKPRKSKKQVRPSVCSKKGTLPLVVVNGNNREPEGLEQIKQVIDA 297
Query: 486 YLKP-----DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
++ P D T + LA + L+ F W + D+ ++P K+++R+
Sbjct: 298 FMDPKCHQADSATVCRALAEFSFQRTKLQEICHQLFEWPPEKTDEYILP---KVAERN 352
>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
gi|28380017|sp|Q8TXU4.1|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
Length = 348
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 49/221 (22%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
+A+ LL L G+P++ AP E EAQCA + + D D LFG+ + +N K
Sbjct: 131 DAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIVGK 190
Query: 380 KSHVLRYTAPDIRYYFEL-------------TREKLIQLALLVGSDYTP-GLQGVGPVTA 425
+ H +T I E+ +RE+L+ LA+L+G+DY P G+ G+GP A
Sbjct: 191 RKHP--HTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRA 248
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHL---TRKLRNVKLNDDFPNVSV 482
L+++ K+ D I + R HL KLR +
Sbjct: 249 LQLIRKYGSLDELKDTDIWPKIER-------------HLPVEPEKLRRL----------- 284
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+L+P++ T+ +L W PD +GL F + +S++RV
Sbjct: 285 ---FLEPEV-TDDYELDWDEPDEEGLVEFLVEERDFSEDRV 321
>gi|157134745|ref|XP_001656421.1| hypothetical protein AaeL_AAEL000425 [Aedes aegypti]
gi|108884298|gb|EAT48523.1| AAEL000425-PA [Aedes aegypti]
Length = 744
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+++R + + +ELL G+ + APGEAEA CA L GVI+ DSD + +GA
Sbjct: 123 EQKRNRFHHVLKQCEELLSSMGLVCVQAPGEAEALCAYLNHDGMVYGVISQDSDCFAYGA 182
Query: 370 RTVYKNFFDKKS---HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVG 421
V++NF +S V Y IR +L +EK++ + +L G DY+P G+ GVG
Sbjct: 183 VRVFRNFCASQSGGGSVDVYDMDKIRMVMDLGQEKIVAMGILSGCDYSPAGVPGVG 238
>gi|302796239|ref|XP_002979882.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
gi|302813529|ref|XP_002988450.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300143852|gb|EFJ10540.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300152642|gb|EFJ19284.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
Length = 377
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 26/210 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNH-TQGVITDDSDIWLFGARTVYKNFFD-- 378
+ Q+LL+L G+P I AP EAEA+CA+L + V ++D D FG+ ++ +
Sbjct: 138 DCQKLLRLMGIPVIEAPCEAEAECAALCKADKVVYAVASEDMDSLTFGSPRFLRHLMEPA 197
Query: 379 -KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS 437
+K V+ + L+ ++ I L +L G DY ++G+GP TAL+++ + S ++
Sbjct: 198 SRKIPVMEFQISTALQELNLSMDQFIDLCILCGCDYCDTIRGIGPQTALKLIRQHSTLEA 257
Query: 438 PNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
+N + + ++W P R + E + PD + +
Sbjct: 258 VLENLNKDRYQIPESW------PYQEARRLFK--------------EPIVLPD--EELPE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
L W PD +GL++F + G++ +RV + +
Sbjct: 296 LKWNAPDEEGLKKFLVEENGFNIDRVTKAI 325
>gi|62859561|ref|NP_001017005.1| flap endonuclease 1 [Xenopus (Silurana) tropicalis]
Length = 382
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L GVP++ AP EAEA CA+L T+D D FG + ++
Sbjct: 140 ECKKLLTLMGVPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + ++ E+ + L +L+GSDY ++G+GP A++++ + +
Sbjct: 200 KKLPIQEFHLNRVMQDMGVSHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKSIEEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
N ++ +NWL K+ + + +L+P+ ++T +
Sbjct: 260 VDNIDLKKYPIPENWLHKEAR------------------------QLFLEPEVVDTESTE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL F + +S++R+
Sbjct: 296 LKWIEPDEEGLVAFMCAEKQFSEDRI 321
>gi|317376168|sp|B1H158.1|FEN1_XENTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|169642201|gb|AAI60482.1| flap structure specific endonuclease 1 [Xenopus (Silurana)
tropicalis]
Length = 382
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L GVP++ AP EAEA CA+L T+D D FG + ++
Sbjct: 140 ECKKLLTLMGVPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + ++ E+ + L +L+GSDY ++G+GP A++++ + +
Sbjct: 200 KKLPIQEFHLNRVMQDMGVSHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKSIEEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
N ++ +NWL K+ + + +L+P+ ++T +
Sbjct: 260 VDNIDLKKYPIPENWLHKEAR------------------------QLFLEPEVVDTESTE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD +GL F + +S++R+
Sbjct: 296 LKWIEPDEEGLVAFMCAEKQFSEDRI 321
>gi|348560389|ref|XP_003465996.1| PREDICTED: flap endonuclease 1-like [Cavia porcellus]
Length = 380
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + +LT+ + + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQALDLTQAQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
I E +RR + +K P+ L ++ + + +L+P++ + +
Sbjct: 253 -HKSIEEIVRRLDH--SKYPVPENWLHKEAQQL--------------FLEPEVLDPESVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD + L +F + +S+ R+
Sbjct: 296 LKWSEPDEEQLVKFLCGEKQFSEERI 321
>gi|304313993|ref|YP_003849140.1| flap structure-specific endonuclease [Methanothermobacter
marburgensis str. Marburg]
gi|302587452|gb|ADL57827.1| flap structure-specific endonuclease [Methanothermobacter
marburgensis str. Marburg]
Length = 328
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 43/241 (17%)
Query: 303 SLELGTDKKRRPYVSRKMLEAQE-------LLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
+LE G ++ R Y R +Q+ LL+L G+P++ APGE EAQ + +
Sbjct: 108 ALEEGDIERARKYAVRSSRMSQDIVESSKRLLELLGIPYVQAPGEGEAQASFIVRRGDAW 167
Query: 356 GVITDDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY 413
V + D D LFGA V +N K +T E+L+ LALLVG+D+
Sbjct: 168 AVASQDYDCLLFGAPRVVRNLTLSGKLEEPEIIELESALRNLSITHEQLVDLALLVGTDF 227
Query: 414 TPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKL 473
G++G+G L+++ K K D + + +
Sbjct: 228 NDGIKGIGARRGLKLI---------------------------KEKGDVFSVIEEIDGDI 260
Query: 474 NDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
D P V + +L+PD+ + + L W PD DG+ F + G+S+ RV + +KK
Sbjct: 261 GGD-PEV-LRGIFLEPDVTGDYE-LRWRKPDRDGVIDFLCGEHGFSEERV----MAALKK 313
Query: 534 I 534
I
Sbjct: 314 I 314
>gi|390603405|gb|EIN12797.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 384
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P +VAP EAEAQCA L G ++D D F A + ++
Sbjct: 141 ECRKLLRLMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK+ + ++ + I L +L+G DY ++GVGP TAL+++ +
Sbjct: 201 KKTPISEINLAKALEGLQMDMSQFIDLCILLGCDYLEPIKGVGPKTALKLI-----REHG 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN-TNVQK 497
++E +R +K K V++ + +P + + KPD+ + +
Sbjct: 256 GLAGVMEHLR-------EKGKGKG-------GVQIPEYWPWEEAKKLFEKPDVEPADEVQ 301
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD++GL +F + G+++ RV
Sbjct: 302 LEWKNPDVEGLVQFLVVEKGFNEERV 327
>gi|123478601|ref|XP_001322462.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121905309|gb|EAY10239.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 651
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 104/193 (53%), Gaps = 30/193 (15%)
Query: 315 YVSRKMLEA-QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVY 373
YV+ + A + LL + VP+I+AP E+ A+CA LEL +DD++ +LFG++ +
Sbjct: 267 YVTADHIRAVKGLLDVMDVPYIIAPEESTAECARLELEGIVDATASDDNNAFLFGSKILI 326
Query: 374 KNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQ----GVGPVTALEIL 429
+N F + H + + ++ + +TR++L+QLA+++ DY ++ VGP+ L+IL
Sbjct: 327 RNIF-LRPHSITLKSLEV---YGMTRKRLLQLAMMIDGDYNDDIKKRLFTVGPIRGLKIL 382
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWL--------AKKNKPDTHL-----TRKLRNVKLNDD 476
+ F P++ + +FK W ++ N + +L ++ ++ + + +
Sbjct: 383 SLF-----PDEK---NGLFQFKEWFSHVIQKNQSQYNNGNPNLIKFSQSKWVKKLIVPSN 434
Query: 477 FPNVSVIEAYLKP 489
FP ++EA++ P
Sbjct: 435 FPPADLMEAFISP 447
>gi|213404252|ref|XP_002172898.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
gi|317376192|sp|B6JYI7.1|FEN1_SCHJY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212000945|gb|EEB06605.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
Length = 377
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ AP EAEAQCA+L ++D D F A + ++
Sbjct: 141 EAKKLLELMGIPYVNAPCEAEAQCAALARAGKVYAAASEDMDTMCFQAPILLRHLTFSEQ 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + Y+ T E+ + L +L+G DY ++GVGP A+E++ + D
Sbjct: 201 RKEPISEYSFEKTIEGLNFTIEQFVDLCILLGCDYCDPIRGVGPARAVELIRQHGNLD-- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
N++ ++ KK P + +D+P +L+ ++ +
Sbjct: 259 --NFVKDA--------DKKKFP------------IPEDWPYQDARRLFLEAEVQEAKDIE 296
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD G+ +F + G++++RV
Sbjct: 297 LKWRAPDEQGIIKFLVEEKGFNEDRV 322
>gi|358340619|dbj|GAA29362.2| flap endonuclease GEN homolog 1 [Clonorchis sinensis]
Length = 612
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 303 SLELGTD-----KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGV 357
++EL D K+RR +S+ E + LLQ GVP + +PGEAEA CA L
Sbjct: 96 NIELSIDPAVLVKRRR--LSKISGECRTLLQALGVPCVQSPGEAEAMCALLNSSKRVDAC 153
Query: 358 ITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREK--LIQLALLVGSDYTP 415
IT+D D +L+GA TVY++F Y R Y EL+ ++ L+ L++++G DY P
Sbjct: 154 ITNDGDAFLYGATTVYRHFTMNSRDPSVYVYRSSRIYKELSLDRFLLVFLSIVLGCDYWP 213
Query: 416 -GLQGVG 421
G G+G
Sbjct: 214 TGTVGIG 220
>gi|374632950|ref|ZP_09705317.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373524434|gb|EHP69311.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 301
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 48/232 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E++ELL GVP + AP E EA+ A L N T + D D LFGA+ + +N
Sbjct: 87 ESKELLSRMGVPIVNAPSEGEAEAAYLNYKNITFAAASQDYDSLLFGAKRLIRNLTITGK 146
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTP-GLQGVGPVT 424
L P+ Y E LTRE+LI +A+L+G+DY P G++G+GP T
Sbjct: 147 RKL----PNKDVYVEIKPEMIELDELLRKLGLTREQLIDVAILIGTDYNPDGIKGIGPKT 202
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
A +++ + +E++ R R+L + D+ + E
Sbjct: 203 AYKLIRTYKS---------IEAIDR----------------RELNPELIYFDYKKIR--E 235
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
+LKP++ + L PD + + ++ +++ RV L + K I +
Sbjct: 236 IFLKPEVVEPSESLELRDPDKEKVTDMLVGEYDFNEERVKNALARLEKAIRE 287
>gi|297842934|ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
gi|297335190|gb|EFH65607.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G +R + E ELL+L +P + A GEAEA CA L + IT DSD +L
Sbjct: 107 GVSVERNKLFCEWVKECVELLELLSIPVLKANGEAEALCAQLNSEGYVDACITPDSDAFL 166
Query: 367 FGARTVYKNFF-DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVT 424
FGA+ V K+ + + Y DI L R+ LI ++LLVG+DY + G+ G+G
Sbjct: 167 FGAKCVIKDIKPNSREPFECYHMSDIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDK 226
Query: 425 ALEILAKFS 433
AL I+ +FS
Sbjct: 227 ALRIVREFS 235
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 471 VKLNDDFPNVSVIEAYLKPDINT-NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIP 529
+ L +FPN +IE YL + + ++WGTPD L K W + V + L+P
Sbjct: 330 IALAPEFPNRKIIELYLSDGLTAEDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLP 389
Query: 530 IMKKISQR 537
++ I R
Sbjct: 390 MLSTIYLR 397
>gi|384245741|gb|EIE19234.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 384
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E + LL+L GVP + AP EAEAQCA + G+ ++D D F + +N ++
Sbjct: 141 ECRRLLRLMGVPVVEAPSEAEAQCAQMCKEGLVYGIASEDMDSLTFATPKLIRNLMKPQT 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ Y + LT ++ + L +L G DY ++G+G VTAL+++ K
Sbjct: 201 QNVPINEYDYDKVLEGLNLTSDQFVDLCILCGCDYCGTIKGIGGVTALKLIQKH------ 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI--NTNVQ 496
+R ++ LA + + ++ D FP + +PD+ ++
Sbjct: 255 ---------KRLEDVLA---------SMEGGRYEIPDPFPFEEARRLFKEPDVLKGDSMP 296
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L W T D +GL +F ++++RV + +
Sbjct: 297 QLKWTTADEEGLVQFLVGDKSFNEDRVRKAV 327
>gi|317374875|sp|C3KJE6.1|FEN1_ANOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229367576|gb|ACQ58768.1| Flap endonuclease 1-A [Anoplopoma fimbria]
Length = 380
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E ++LL L GVP+I AP EAEA CA+L T+D D FG + ++ S
Sbjct: 140 ECKKLLTLMGVPYIEAPCEAEATCAALVKAGKVFATATEDMDGLTFGTNVLLRHL--TAS 197
Query: 382 HVLRYTAPDIRYY-----FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+ ++ Y LT E+ I L + +G DY ++G+GP A++++ + +
Sbjct: 198 EAKKLPIQELHYSRILQDIGLTNEQFIDLCIPLGCDYCGTIKGIGPKRAIDLIKQHGSIE 257
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
+N ++S +K P+ L ++ R + L + + S ++
Sbjct: 258 EILEN--IDS--------SKHPAPEDWLYKEARGLFLKAEVVDCSTVD------------ 295
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD +GL +F N+ +S++R+ I+K
Sbjct: 296 -LKWSEPDEEGLIQFMCNEKQFSEDRMRNGCKKILK 330
>gi|8570440|gb|AAF76467.1|AC020622_1 Contains similarity to excision repair protein ERCC5 from Homo
sapiens gi|1082359 and contains XPG N-terminal PF|00752
and XPG I-region PF|00867 domains [Arabidopsis thaliana]
Length = 497
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G +R S + E ELL+L G+P + A GEAEA CA L IT DSD +L
Sbjct: 107 GVSVERNKLFSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFL 166
Query: 367 FGARTVYKNFF-DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVT 424
FGA V K+ + + Y I L R+ LI ++LLVG+DY + G+ G+G
Sbjct: 167 FGAMCVIKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDK 226
Query: 425 ALEILAKFS 433
AL I+ +FS
Sbjct: 227 ALRIVREFS 235
>gi|431910392|gb|ELK13465.1| Flap endonuclease 1 [Pteropus alecto]
Length = 381
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPSKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L RF + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVRFMCGEKQFSEERI 321
>gi|378754698|gb|EHY64727.1| flap endonuclease 1-B [Nematocida sp. 1 ERTm2]
Length = 342
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF----D 378
AQ LL GVP++ AP EAE CA+L + N GV+++D D FG + + +NFF
Sbjct: 138 AQALLSAMGVPYMTAPNEAEGFCAALNIANAVNGVVSEDMDSLAFGGKVLLRNFFPALMK 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGP 422
KK V+ + ++ L + + I + +L+G DY +G+GP
Sbjct: 198 KKMAVMEISLDEVLKQTGLDQAEFIDMCILLGCDYCQKPKGLGP 241
>gi|387595247|gb|EIJ92872.1| flap endonuclease 1-B [Nematocida parisii ERTm1]
Length = 342
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF----D 378
AQ LL++ G+P++ AP EAE CA+L + GV+++D D FG + + +NFF
Sbjct: 138 AQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSEDMDSLAFGGKILLRNFFPALMK 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGP 422
KK V+ + + L + + I + +L+G DY L+G+GP
Sbjct: 198 KKLSVMEISLEMVLKQTGLDQSEFIDMCILLGCDYCQKLKGMGP 241
>gi|261244970|ref|NP_001159668.1| flap endonuclease 1 [Ovis aries]
gi|317376193|sp|C8BKD0.1|FEN1_SHEEP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256665367|gb|ACV04829.1| flap structure-specific endonuclease 1 [Ovis aries]
Length = 380
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L RF + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVRFMCGEKQFSEERI 321
>gi|388454741|ref|NP_001252879.1| flap endonuclease 1 [Macaca mulatta]
gi|402893159|ref|XP_003909769.1| PREDICTED: flap endonuclease 1 isoform 1 [Papio anubis]
gi|402893161|ref|XP_003909770.1| PREDICTED: flap endonuclease 1 isoform 2 [Papio anubis]
gi|75076152|sp|Q4R5U5.1|FEN1_MACFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|67970375|dbj|BAE01530.1| unnamed protein product [Macaca fascicularis]
gi|355566422|gb|EHH22801.1| Flap endonuclease 1 [Macaca mulatta]
gi|355752043|gb|EHH56163.1| Flap endonuclease 1 [Macaca fascicularis]
gi|380787489|gb|AFE65620.1| flap endonuclease 1 [Macaca mulatta]
gi|383413161|gb|AFH29794.1| flap endonuclease 1 [Macaca mulatta]
gi|384939550|gb|AFI33380.1| flap endonuclease 1 [Macaca mulatta]
Length = 380
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K + H + +LKP+
Sbjct: 253 -HKSIEEIVRRLDPSKYPVPENWLHK----EAH--------------------QLFLKPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|212544870|ref|XP_002152589.1| Flap endonuclease Rad27, putative [Talaromyces marneffei ATCC
18224]
gi|210065558|gb|EEA19652.1| Flap endonuclease Rad27, putative [Talaromyces marneffei ATCC
18224]
Length = 411
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F A + ++
Sbjct: 156 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 215
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + I L +L+G DY + VGP TAL+++ + +
Sbjct: 216 RKEPILEIHLDKALEGLGMDMAQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEK- 274
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ +N P + + DD+P E + PD+ +
Sbjct: 275 ----VVEAI---------ENDPK-------KKYVIPDDWPYQEARELFFNPDVRKADDPQ 314
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W +PD++GL +F G+S++RV
Sbjct: 315 CDFKWESPDVEGLVKFLVTDKGFSEDRV 342
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E ++LL+L GVP+I AP EAEAQCA L
Sbjct: 141 KFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVL 182
>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
gi|317374916|sp|A7RRJ0.1|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
Length = 377
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 98/215 (45%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P++ AP EAEAQCA+L T+D D FG + ++
Sbjct: 140 ECKQLLKLMGIPYVEAPCEAEAQCAALVKSGKVYATGTEDMDALTFGTTVMLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + ++ L++++ I L +L+G DY ++G+GP +++++ + D
Sbjct: 200 KKMPIKEFHLQNVLSEAGLSQDEFIDLCILLGCDYCDSIKGIGPKRSVDLIRQHRSIDKI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N +NWL K+ + E + P++ N +
Sbjct: 260 LENIDTSKHPPPENWLYKEAR------------------------ELFKNPEVRNPEEIE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W P+ + L F + G+S++R+ + + K
Sbjct: 296 LKWEEPNEEALVTFMCQEKGFSEDRIRSGIKKLTK 330
>gi|212224248|ref|YP_002307484.1| flap endonuclease-1 [Thermococcus onnurineus NA1]
gi|226700956|sp|B6YWX4.1|FEN_THEON RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212009205|gb|ACJ16587.1| flap structure-specific endonuclease [Thermococcus onnurineus NA1]
Length = 341
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 54/223 (24%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A+ LL+L G+P I AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKTLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPKLVRNL----T 189
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTP-GLQGVGPVT 424
R P Y E + REKLI++A+LVG+DY P G++G+GP
Sbjct: 190 ITGRRKLPGKNVYVEVKPELIVLEEVLKELSIDREKLIEMAILVGTDYNPGGIKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
AL I+ + + P + Y K+++ D + ++ E
Sbjct: 250 ALTIVKR---TKDPLKKY------------QKESEVDLY-----------------AIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+L P + T+ +L W PD +G+ +F ++ +S+ RV L
Sbjct: 278 FFLNPPV-TDDYELKWREPDEEGIIKFLCDEHDFSEERVKNGL 319
>gi|334182222|ref|NP_171691.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|357529503|sp|Q9LPD2.3|GENL1_ARATH RecName: Full=Flap endonuclease GEN-like 1
gi|332189224|gb|AEE27345.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 599
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
G +R S + E ELL+L G+P + A GEAEA CA L IT DSD +L
Sbjct: 107 GVSVERNKLFSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFL 166
Query: 367 FGARTVYKNFF-DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVT 424
FGA V K+ + + Y I L R+ LI ++LLVG+DY + G+ G+G
Sbjct: 167 FGAMCVIKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDK 226
Query: 425 ALEILAKFS 433
AL I+ +FS
Sbjct: 227 ALRIVREFS 235
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 471 VKLNDDFPNVSVIEAYLKPDINT-NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIP 529
+ L +FPN +IE YL + T + ++WGTPD L K W + V + L+P
Sbjct: 341 IALAPEFPNRKIIELYLSDGLMTGDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLP 400
Query: 530 IMKKISQR 537
++ I R
Sbjct: 401 MLSTIYLR 408
>gi|168064381|ref|XP_001784141.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664341|gb|EDQ51065.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 435
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 318 RKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF- 376
R++ E ELL+L G+P + A EAE CA L+ +T DSD +L GAR V K
Sbjct: 120 RRIDECVELLELLGMPVLHAAWEAEGLCAELDRDGLVDACVTADSDAFLHGARCVIKVLQ 179
Query: 377 FDKKSHVLR-YTAPDIRYYFELTREKLIQLALLVGSDYT-PGLQGVGPVTALEILAKFS 433
D K ++ Y A DI+ L RE +I LALL+G DY G+ G+G A+ ++ S
Sbjct: 180 MDSKVPIIETYDAEDIKTILGLDREHMIALALLMGCDYNKKGVVGIGCNRAIRLVRSVS 238
>gi|221052642|ref|XP_002261044.1| flap exonuclease [Plasmodium knowlesi strain H]
gi|317376188|sp|B3L014.1|FEN1_PLAKH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194247048|emb|CAQ38232.1| flap exonuclease, putative [Plasmodium knowlesi strain H]
Length = 595
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 38/226 (16%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---- 377
EA++LL L G+P + AP EAE+QCA L N T+D+D +FG + + +N
Sbjct: 142 EAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAS 201
Query: 378 ------DKKSHVLRYTAPDIRYY-----FELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+K S Y +I L + I +L G DY ++G+G TA
Sbjct: 202 STSQNKNKNSSKRGYILTEINLEQVLKGLNLNMNEFIDFCILCGCDYCDTIKGIGSKTAY 261
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
++ +++ + I+E++ + K + R V+ D F N V+
Sbjct: 262 NLIKEYNSIEK-----IIENIDKNK----------YQIPSNFRFVEARDSFINPKVLS-- 304
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
K +I K+ WG P ++ L+ F + +++ RV + ++K
Sbjct: 305 -KEEI-----KIDWGEPKIEELKNFLIKDYNFNEVRVTNYINRLLK 344
>gi|351699147|gb|EHB02066.1| Flap endonuclease 1 [Heterocephalus glaber]
Length = 380
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++ ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 382 HVL---RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L + I LT+E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 RKLPIQEFHLSRILQALNLTQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPSKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFLCGEKQFSEERI 321
>gi|311977771|ref|YP_003986891.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|82000308|sp|Q5UQW7.1|YL386_MIMIV RecName: Full=Putative endonuclease L386
gi|55417005|gb|AAV50655.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|308204373|gb|ADO18174.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|339061318|gb|AEJ34622.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
Length = 473
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 288 VPFIVAPGEA-EAQCASLELGTDKKRR-PYVSRKMLEAQELLQLFGVPFIVAPGEAEAQC 345
+P V G+A + + ++E +K R S + E Q LL L G+P+I+APGEA+ C
Sbjct: 103 IPIYVFDGKAPDIKSKTIEKRKLRKDRFKLTSEDIKEVQILLDLMGIPYIIAPGEADVIC 162
Query: 346 ASLELGN------HTQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFE 396
+ L + + +GV T+DSD+ GA ++K+ + +++ D+ +
Sbjct: 163 SWLCARHDSNGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVKLKDVLGFLG 222
Query: 397 LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
LT + I L +L+G DY ++G+GP A +++ ++ D
Sbjct: 223 LTMNEFIDLCVLLGCDYCDNIKGIGPKNAYKLIVEYRTLD 262
>gi|351737540|gb|AEQ60575.1| putative endonuclease of the XPG family [Acanthamoeba castellanii
mamavirus]
gi|398257219|gb|EJN40827.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
lentillevirus]
Length = 473
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 288 VPFIVAPGEA-EAQCASLELGTDKKRR-PYVSRKMLEAQELLQLFGVPFIVAPGEAEAQC 345
+P V G+A + + ++E +K R S + E Q LL L G+P+I+APGEA+ C
Sbjct: 103 IPIYVFDGKAPDIKSKTIEKRKLRKDRFKLTSEDIKEVQILLDLMGIPYIIAPGEADVIC 162
Query: 346 ASLELGN------HTQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFE 396
+ L + + +GV T+DSD+ GA ++K+ + +++ D+ +
Sbjct: 163 SWLCARHDSNGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVKLKDVLGFLG 222
Query: 397 LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
LT + I L +L+G DY ++G+GP A +++ ++ D
Sbjct: 223 LTMNEFIDLCVLLGCDYCDNIKGIGPKNAYKLIVEYRTLD 262
>gi|311247497|ref|XP_003122676.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
Length = 393
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L GVP++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 153 ECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 212
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 213 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 265
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 266 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 300
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 301 VLDPEAVELKWSEPNEEELVKFMCGEKQFSEERI 334
>gi|452209484|ref|YP_007489598.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
gi|452099386|gb|AGF96326.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
Length = 338
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 51/218 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+++ LL + G+P+I AP E EAQ A + L V + D D +LFGA TV +N +
Sbjct: 134 DSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNL----A 189
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ P Y + + R++LI +A+ VG+DY GL+ VGP TA
Sbjct: 190 ATGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTA 249
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
L+++ K + H + + +++ S+ E
Sbjct: 250 LKLIKKHG---------------------------NIHAVLREKGMEIE---ALDSIKEL 279
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ PD+ T+ ++ WG PD + L F ++ +S++RV
Sbjct: 280 FTHPDV-TDDYEIKWGKPDSEKLINFLCDENDFSEDRV 316
>gi|387592620|gb|EIJ87644.1| flap endonuclease 1-B [Nematocida parisii ERTm3]
Length = 371
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF----D 378
AQ LL++ G+P++ AP EAE CA+L + GV+++D D FG + + +NFF
Sbjct: 138 AQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSEDMDSLAFGGKILLRNFFPALMK 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGP 422
KK V+ + + L + + I + +L+G DY L+G+GP
Sbjct: 198 KKLSVMEISLEMVLKQTGLDQSEFIDMCILLGCDYCQKLKGMGP 241
>gi|317374921|sp|B6QT52.2|FEN1_PENMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L GVP+I AP EAEAQCA L ++D D F A + ++
Sbjct: 140 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + + I L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPILEIHLDKALEGLGMDMAQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ +N P + + DD+P E + PD+ +
Sbjct: 259 ----VVEAI---------ENDPK-------KKYVIPDDWPYQEARELFFNPDVRKADDPQ 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W +PD++GL +F G+S++RV
Sbjct: 299 CDFKWESPDVEGLVKFLVTDKGFSEDRV 326
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E ++LL+L GVP+I AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVL 166
>gi|310796699|gb|EFQ32160.1| hypothetical protein GLRG_07304 [Glomerella graminicola M1.001]
Length = 869
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 105/235 (44%), Gaps = 44/235 (18%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK-- 380
A+ +++LFG P APGEAEA+CA L+ V+++D D +FG +N+ +
Sbjct: 137 AKRVIRLFGFPLHDAPGEAEAECALLQQRGIVDAVLSEDVDTIMFGCTRTLRNWTAEGTR 196
Query: 381 -----SHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKF 432
+HV Y + + L RE ++ +AL+ G DY P G+ G G A E A F
Sbjct: 197 GAKTPTHVSLYDVDELLSAGTGLDREGMVLVALMSGGDYIPEGVPGCGVKLACEAAKAGF 256
Query: 433 SPSDSPNQNYIVESMRRFK--------NWLA------KKNKPDTHLTRKLRNVKLNDDFP 478
+S+ R K W A + NK R + + + D+FP
Sbjct: 257 G-----------KSLCRLKFDDDVELEEWRANLRDELRTNKSGFFRVRH-KALSIPDEFP 304
Query: 479 NVSVIEAYLKPDIN--TNVQKL----AWGTP-DLDGLRRFAANKFGWSQNRVDQT 526
+ V+ Y P ++ T V+KL W P D+ GLR F F W NR+ T
Sbjct: 305 SRHVLRHYTHPVVSCATTVEKLEKEIIWSRPVDVQGLRYFVEETFDWV-NRIGAT 358
>gi|253744402|gb|EET00616.1| Flap structure-specific endonuclease [Giardia intestinalis ATCC
50581]
Length = 361
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD-KK 380
+A++LL + G+P++VA GEAEAQC ++ +GV + D D+ FG+ ++ +N
Sbjct: 141 QAEKLLDILGIPYVVAAGEAEAQCVAMAKAGLCEGVASSDLDVLAFGSPSLIRNLAQGGD 200
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
++ + + ++ + L +L G DY L+G+GP TA +++ K+
Sbjct: 201 KEIMEINLDTVLNELGFSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKY 252
>gi|299751761|ref|XP_001830466.2| hypothetical protein CC1G_07381 [Coprinopsis cinerea okayama7#130]
gi|298409522|gb|EAU91346.2| hypothetical protein CC1G_07381 [Coprinopsis cinerea okayama7#130]
Length = 783
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 37/232 (15%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK---- 379
+ELL FGV + APGEAEA+ L +++DD D ++FGA+ V KN +
Sbjct: 89 KELLDAFGVEWREAPGEAEAELGHLNNLGIIDAIMSDDCDSFIFGAKVVIKNKSKELSGN 148
Query: 380 -------------KSHVLRYTAPDIRY--YFELTREKLIQLALLVGSDY-TPGLQGVGPV 423
K H + Y DI+ L R L+ ALL G DY G++ +G V
Sbjct: 149 ASNPAVNAAGKVDKHHTMVYRIEDIQNDPDIGLKRGGLVLFALLCGGDYDQKGVRNIGKV 208
Query: 424 TALEILAKFSPSDSPNQNYIVESMRRFKNWLAK-KNKPDTH--------LTRKLRNVKLN 474
AL LA+ + Y +S F+ +L + +++ +T L+R+++N L
Sbjct: 209 AAL-ALARCGFGEKLLAAYQTKSPAEFQRFLHQWRSEVNTELMTNSRGFLSRRMQNASLP 267
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLA-------WGTPDLDGLRRFAANKFGWS 519
DFP ++ +E Y P I++N G DL L F F W+
Sbjct: 268 PDFPALTTLEKYANPKISSNGGSGPVTSGMRDRGDVDLAALAAFCEKYFEWA 319
>gi|73668744|ref|YP_304759.1| flap endonuclease-1 [Methanosarcina barkeri str. Fusaro]
gi|121723542|sp|Q46D63.1|FEN_METBF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|72395906|gb|AAZ70179.1| flap endonuclease 1 [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 43/218 (19%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF--FDK 379
+++ LL + G+P+I AP E EAQ A + L V + D D +LFGA TV +N K
Sbjct: 134 DSKYLLSIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPTVIRNLAVTGK 193
Query: 380 KSHVLRYTAPDIRY----------YFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ ++ D+ + RE+LI +A+ VG+D+ GL+ VGP TAL+++
Sbjct: 194 RKLPGKHVYVDVELELIELEETLGVLGINREQLIDIAICVGTDFNKGLEKVGPKTALKLI 253
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
K D H + + V++ + + E + P
Sbjct: 254 KKHG---------------------------DIHAVLREKGVEIKE---LDRIRELFTHP 283
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
D+ T+ ++ WG PD + L +F + +S +RV + +
Sbjct: 284 DV-TDDYEIKWGKPDSEKLIKFLCKENDFSVDRVKKAV 320
>gi|186510818|ref|NP_190459.2| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|332644950|gb|AEE78471.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 536
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 30/238 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EA+ + G+ + EAEAQCA L + + DSDI+LFGA+TVY+ +
Sbjct: 60 EAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICLGEG 119
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI+ L R LI LALL+GSDY+ G++G+ A E++ S
Sbjct: 120 GYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVR------SIGD 173
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTR----------KLRNVKLNDDFPN-----VSVIEA 485
N I+E + A+K + R L + N+ P VI+A
Sbjct: 174 NVILEKVASEGLSFAEKPRKSKKQVRPSVCSKKGTLPLVVINGNNRDPERLEEIKQVIDA 233
Query: 486 YLKP-----DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
++ P D NT + LA + L+ F W + D+ ++P K+++R+
Sbjct: 234 FMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILP---KVAERN 288
>gi|451927433|gb|AGF85311.1| endonuclease of the XPG family [Moumouvirus goulette]
Length = 431
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 9/117 (7%)
Query: 318 RKMLEAQELLQLFGVPFIVAPGEAEAQCASL-----ELGN-HTQGVITDDSDIWLFGART 371
R ++EAQ LL L G+P+I+APGEA+ C+ L E G + +GV +DDSD+ GA
Sbjct: 136 RDIIEAQILLDLMGIPYIIAPGEADVVCSWLAARRDENGKRYVKGVCSDDSDMLALGAPY 195
Query: 372 VYKN---FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
++K+ F K V + LT + L +L+G DY ++GVGP TA
Sbjct: 196 LFKDMLKFMSKNKEVTIISLNKTLTKTGLTMRQFTDLCVLLGCDYCDNIKGVGPKTA 252
>gi|295663294|ref|XP_002792200.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279375|gb|EEH34941.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 381
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F + + ++
Sbjct: 126 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 185
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + +GP TAL+++ D
Sbjct: 186 RKEPILEIHLDRVLEDLDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLI-----RDHG 240
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ ++ P + + +D+P E + PD+
Sbjct: 241 SLEKVVEAI---------ESDPK-------KKYVIPEDWPYKDARELFFDPDVRKADHPD 284
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 285 CDFKWEAPDVEGLVKFLVEEKAFSEDRV 312
>gi|341039026|gb|EGS24018.1| nuclease-like protein [Chaetomium thermophilum var. thermophilum
DSM 1495]
Length = 922
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 28/220 (12%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
A+ L++LFG APGEAEA+CA LE V+++D D +FG+R +++ + S
Sbjct: 103 AKRLIRLFGFTAHDAPGEAEAECAYLEQQGIVDAVLSEDVDTIMFGSRVTLRDWSSEGSK 162
Query: 382 -----HVLRYTAPDI-RYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI------ 428
HV + A I L RE ++ +AL+ G DY P G+ G G A +
Sbjct: 163 GGPPTHVTLHDAKKIAEGPSGLDREGMVLVALMSGGDYLPDGIPGCGIKVACQAAKAGFG 222
Query: 429 --LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
L + +D + I E +R + L + K + +++ ++FPN+ V+ Y
Sbjct: 223 KELCRIKRAD---KEAITEWKQRLLHEL--RTNESGFFRTKHKALEIPENFPNMEVLRYY 277
Query: 487 LKPDINT--NVQKLAWGTP-----DLDGLRRFAANKFGWS 519
P +++ +++L P D+ GLR F F W+
Sbjct: 278 THPVVSSPATIERLRQEFPPSSTVDIAGLREFTRETFDWT 317
>gi|225685184|gb|EEH23468.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb03]
Length = 359
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F + + ++
Sbjct: 104 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + +GP TAL+++ D
Sbjct: 164 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLI-----RDHG 218
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ ++ P + + +D+P E + PD+
Sbjct: 219 SLEKVVEAI---------ESDPK-------KKYVIPEDWPYKDARELFFDPDVRKADHPD 262
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 263 CDFKWEAPDVEGLVKFLVEEKAFSEDRV 290
>gi|21227008|ref|NP_632930.1| flap endonuclease-1 [Methanosarcina mazei Go1]
gi|28380015|sp|Q8PYF6.1|FEN_METMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|20905326|gb|AAM30602.1| FLAP endonuclease-1 [Methanosarcina mazei Go1]
Length = 338
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 51/218 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+++ LL + G+P+I AP E EAQ A + L V + D D +LFGA TV +N +
Sbjct: 134 DSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNL----A 189
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ P Y + + R++LI +A+ VG+DY GL+ VGP TA
Sbjct: 190 ATGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTA 249
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
L+++ K + H + + +++ S+ E
Sbjct: 250 LKLIKKHG---------------------------NIHAVIREKGMEIE---ALDSIKEL 279
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ PD+ T+ ++ WG PD + L F ++ +S++RV
Sbjct: 280 FTHPDV-TDDYEIKWGKPDSEKLINFLCDENDFSEDRV 316
>gi|186510820|ref|NP_001118795.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|166221584|sp|Q9M2Z3.2|GENL2_ARATH RecName: Full=Flap endonuclease GEN-like 2
gi|332644951|gb|AEE78472.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 600
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 30/238 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EA+ + G+ + EAEAQCA L + + DSDI+LFGA+TVY+ +
Sbjct: 124 EAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICLGEG 183
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI+ L R LI LALL+GSDY+ G++G+ A E++ S
Sbjct: 184 GYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVR------SIGD 237
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTR----------KLRNVKLNDDFPN-----VSVIEA 485
N I+E + A+K + R L + N+ P VI+A
Sbjct: 238 NVILEKVASEGLSFAEKPRKSKKQVRPSVCSKKGTLPLVVINGNNRDPERLEEIKQVIDA 297
Query: 486 YLKP-----DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
++ P D NT + LA + L+ F W + D+ ++P K+++R+
Sbjct: 298 FMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILP---KVAERN 352
>gi|428672546|gb|EKX73459.1| flap endonuclease-1, putative [Babesia equi]
Length = 746
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
A++LL+L G+P + A EAEAQCA L V ++DSD +FG R + +N KK
Sbjct: 143 AKQLLRLMGIPVVEAKEEAEAQCAQLVQEGIATAVASEDSDSLVFGCRILLRNLSGKK-- 200
Query: 383 VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
VLR + TR + +L G DY ++G+GP A ++ K+
Sbjct: 201 VLRIDQEKVLSLLGFTRAQFTDFCILCGCDYCGTIKGIGPKNAYSLIKKY 250
>gi|168066677|ref|XP_001785260.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374868|sp|A9U328.1|FEN12_PHYPA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|162663130|gb|EDQ49912.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 349
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 26/210 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ ++LL+L GVP + AP EAEA+CASL V ++D D FG+ ++ + S
Sbjct: 141 DCRKLLRLMGVPVVEAPSEAEAECASLCKTGKVYAVASEDMDSLTFGSTRFLRHLMEPVS 200
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L D+ E LT ++ + L +L G DY ++G+G TAL+++ + +
Sbjct: 201 RKLPVMEFDMNKVLEGLSLTMDQFVDLCILCGCDYIDTIRGIGAQTALKLIRQHGSLEK- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + + PD + R + F V +A PD
Sbjct: 260 ----ILENLNKDRYQI-----PDPWPYEEARRL-----FKEPLVTQAEDVPDFK------ 299
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLI 528
W PD +GL +F + G++ +RV QT I
Sbjct: 300 -WTAPDAEGLIKFLVEENGFNHDRV-QTAI 327
>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
Length = 344
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK-- 379
E + LL+ G+P + AP E EA+ A L +T + D D LFGA + +N
Sbjct: 129 EGKRLLEAMGIPVVQAPSEGEAEAAYLCSQGYTWAAASQDYDSLLFGANKLIRNLTLTGK 188
Query: 380 ----KSHVLRYTAP------DIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI 428
K V P D+ F +TRE+L+ + +L+G+DY P G++G+GPVTAL I
Sbjct: 189 RKLPKKDVYVEIKPELIELEDLLKKFGITREQLVDIGILIGTDYDPDGIKGIGPVTALRI 248
Query: 429 LAKFS 433
+ K+
Sbjct: 249 IKKYG 253
>gi|302508023|ref|XP_003015972.1| Rad2-like endonuclease, putative [Arthroderma benhamiae CBS 112371]
gi|291179541|gb|EFE35327.1| Rad2-like endonuclease, putative [Arthroderma benhamiae CBS 112371]
Length = 821
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 40/247 (16%)
Query: 309 DKKRRPYVSRKMLEAQ-----ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
D KR VS+ AQ +L++LF P +APGEAEA+CA L+ V+++D D
Sbjct: 138 DYKRGRLVSKNAAAAQIELSRKLIELFSYPCHMAPGEAEAECAKLQQAGVVDAVMSNDVD 197
Query: 364 IWLFGARTVYKNF-------FDKKSHVLRYT--APDIRYYFELTREKLIQLALLVGSDYT 414
+FG++ N+ +HV Y A D L ++ +ALL G DY+
Sbjct: 198 ALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTRGMVLVALLSGGDYS 257
Query: 415 P-GLQGVGPVTALEIL-AKFSP-------------SDSPNQNYIVESMRRFKNWLAKKNK 459
P G+ GP A+EI A F S + + E R + L ++
Sbjct: 258 PAGVALCGPKLAVEIARAGFGEDLLEITQDLLSGRSTKKAEEALCEWRERLQYEL--QSN 315
Query: 460 PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL-------AWGTP-DLDGLRRF 511
+ K + VK+ DFPN++ + + + P + ++++++ WG D+D LR F
Sbjct: 316 ESGYFKTKHKAVKIPADFPNLAALRSCVDP-VTSSLKEMDALRRSDIWGRRVDVDRLRAF 374
Query: 512 AANKFGW 518
GW
Sbjct: 375 VGKYLGW 381
>gi|453084814|gb|EMF12858.1| flap endonuclease [Mycosphaerella populorum SO2202]
Length = 393
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 23/216 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
EAQ LL+L GVP+IVAP EAEAQCA L ++D D F A + ++ F ++
Sbjct: 140 EAQRLLKLMGVPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFNAPVLLRHLTFSEQ 199
Query: 380 KSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + + + I + +L+G DY ++G+GP A ++ + +
Sbjct: 200 RKEPIQEIHLDRVLEGLDFDLNQFIDMCILLGCDYLDPVKGIGPKNAHALIKEHKTLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+VE + + + ++ P + +L P+V +A P+ +
Sbjct: 259 ----VVEHIEKTGKYTLPEDWP-------YQEARLLFQEPDVRAADA---PECD-----F 299
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
W PD++GL +F + G+S++RV + K +
Sbjct: 300 KWEAPDVEGLVKFLVEEKGFSEDRVRSAATRLQKNL 335
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 265 TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
+R +T++ + EAQ LL+L GVP+IVAP EAEAQCA L
Sbjct: 127 SRRTVRVTKEHNAEAQRLLKLMGVPYIVAPTEAEAQCAVL 166
>gi|322707737|gb|EFY99315.1| putative DNA repair endonuclease rad2 [Metarhizium anisopliae ARSEF
23]
Length = 480
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 24/217 (11%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK-- 380
A+ L++LFG P APGE EA+CA L+ V+++D D +FG +N+ +
Sbjct: 58 AKHLIRLFGFPIHDAPGEGEAECALLQRHGIVDAVLSEDVDTIMFGCTKTLRNWSSEGKT 117
Query: 381 ----SHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFS 433
+HV Y D+ L RE ++ +AL+ G DY P G+ G G A E A F
Sbjct: 118 STAPTHVSLYDVEDMALGDLGLDREGMVLVALMSGGDYLPDGVPGCGVKVACEAAKAGFG 177
Query: 434 PSDSPNQNYIVESMRRFKNWLAK--KNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
S + + ++ ++N L + + K + + + +DFPN+ V+ Y P +
Sbjct: 178 KSVCRLKVSDKDGIQAWRNSLRHELQTNEKGYFRTKHKALTIPEDFPNIEVLRYYTHPIV 237
Query: 492 N----------TNVQKLAWGTPDLDGLRRFAANKFGW 518
+ T QK + L LR F F W
Sbjct: 238 SSESSIEAIRQTMEQKHVF---HLTALREFTRENFDW 271
>gi|311247499|ref|XP_003122675.1| PREDICTED: flap endonuclease 1-like isoform 1 [Sus scrofa]
Length = 380
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L GVP++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPEAVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
Length = 328
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 39/230 (16%)
Query: 303 SLELGTDKKRRPY------VSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
+LE G ++ R Y +SR ++E +++LL++ GVP+I A GE EAQ + +
Sbjct: 108 ALEEGNLEEARKYAVRSSRMSRDIIEGSKKLLEILGVPYIQALGEGEAQASYMVENGDAW 167
Query: 356 GVITDDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY 413
V + D D LFGA + +N K+++ T + E+TRE+L+ +A+LVG+D+
Sbjct: 168 CVGSQDYDCILFGATRMVRNLTITGGKANLELITLKKVLENMEITREQLVDIAILVGTDF 227
Query: 414 TPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKL 473
G++GVG T L+++ K D N ++E KN P LRN+
Sbjct: 228 NRGVKGVGAKTGLKLIKK--HGDIFN---VIE-----KNDYEMDVDPTI-----LRNM-- 270
Query: 474 NDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
F +V++ Y +L W +PD + F ++ +S+ RV
Sbjct: 271 ---FLEHNVVKDY----------ELKWNSPDKEAAVEFLCDQHDFSEQRV 307
>gi|317374922|sp|Q013G9.2|FEN1_OSTTA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 389
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VS++ +E +L QL G+P AP EAEA CA++ V T+D D F A
Sbjct: 129 KRTVRVSKEQSMEVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLVWAVGTEDMDTLTFAA 188
Query: 370 RTVYKNFFDKKSH---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
V +N KS VL + LT ++ I L +L G DYT ++GVGP TAL
Sbjct: 189 PRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQFIDLCILCGCDYTDTIRGVGPKTAL 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + + + E K+W + R+L F N V++
Sbjct: 249 KLIKEHGSIEKILEAIDTEKYPPPKDW-------EFAGAREL--------FKNPEVMDV- 292
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
IN L+W PD +GL F + + ++RV I K
Sbjct: 293 --SGIN-----LSWKAPDEEGLVEFLVKEKQFQEDRVRGVCARIRK 331
>gi|327307022|ref|XP_003238202.1| hypothetical protein TERG_00194 [Trichophyton rubrum CBS 118892]
gi|326458458|gb|EGD83911.1| hypothetical protein TERG_00194 [Trichophyton rubrum CBS 118892]
Length = 768
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 40/247 (16%)
Query: 309 DKKRRPYVSRKMLEAQ-----ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
D KR V++ AQ +L++LF P +APGEAEA+CA L+ V+++D D
Sbjct: 85 DYKRGRLVNKNAAAAQIELSRKLIELFSYPCHMAPGEAEAECAKLQQAGVVDAVMSNDVD 144
Query: 364 IWLFGARTVYKNF-------FDKKSHVLRYT--APDIRYYFELTREKLIQLALLVGSDYT 414
+FG++ N+ +HV Y A D L +I +ALL G DY+
Sbjct: 145 ALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTRGMILVALLSGGDYS 204
Query: 415 P-GLQGVGPVTALEIL-AKFSP-------------SDSPNQNYIVESMRRFKNWLAKKNK 459
P G+ GP A+EI A F S + + E R + L ++
Sbjct: 205 PAGVALCGPKLAVEIARAGFGEDLLEITQDLLSGRSTKKAEEALCEWRERLQYEL--QSN 262
Query: 460 PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL-------AWGTP-DLDGLRRF 511
+ K + VK+ DFPN++ + + + P + ++++++ WG D+D LR F
Sbjct: 263 ESGYFKTKHKAVKIPADFPNLAALRSCVDP-VTSSLKEMDALRRSDIWGRRVDVDRLRTF 321
Query: 512 AANKFGW 518
GW
Sbjct: 322 VGRYLGW 328
>gi|16758170|ref|NP_445882.1| flap endonuclease 1 [Rattus norvegicus]
gi|8896169|gb|AAF81265.1|AF281018_1 flag structure-specific endonuclease [Rattus norvegicus]
Length = 380
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
I E +RR +K P+ L ++ R + +L+P+ ++ +
Sbjct: 253 -HKSIEEIVRRLDP--SKYPVPENWLHKEARQL--------------FLEPEVVDPESVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P+ + L +F + +S+ R+
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
gi|122102839|sp|Q7K7A9.1|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
Length = 385
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + + + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
N +NW N K+ E +++P++ + +
Sbjct: 260 LDNLDSSKYTVPENW----------------NYKV--------ARELFIEPEVADADSID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD +GL +F +++ RV +MK
Sbjct: 296 LKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMK 330
>gi|301781710|ref|XP_002926265.1| PREDICTED: flap endonuclease 1-like [Ailuropoda melanoleuca]
gi|281345366|gb|EFB20950.1| hypothetical protein PANDA_015901 [Ailuropoda melanoleuca]
Length = 380
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 109/241 (45%), Gaps = 47/241 (19%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
+AQ A +E +K KR V+++ E + LL L GVP++ AP EAEA CA+L
Sbjct: 113 QAQAAGVEEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + I L +E+ + L +L+GS
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGS 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRF--------KNWLAKKNKPDTH 463
DY ++G+GP A++++ K I E +RR +NWL K+ +
Sbjct: 233 DYCESIRGIGPKRAVDLIQK--------HKSIEEIVRRLDPNKYPVPENWLHKEAQ---- 280
Query: 464 LTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
+ +L+P++ + +L W P+ + L +F + +S+ R
Sbjct: 281 --------------------QLFLEPEVLDPESVELKWSEPNEEELVKFMCGEKQFSEER 320
Query: 523 V 523
+
Sbjct: 321 I 321
>gi|429962438|gb|ELA41982.1| hypothetical protein VICG_00999 [Vittaforma corneae ATCC 50505]
Length = 613
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 384
ELL + +P I GE +AQC L GV+++D+D+ L G TVYKNFF K +L
Sbjct: 442 ELLDILELPHIECIGETDAQCGYLFRKRLIDGVVSEDNDMVLHGV-TVYKNFFRKDKDIL 500
Query: 385 RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
++ D+ L ++ LI+++ L+GSDY G++ VG + + L S ++
Sbjct: 501 SFSYQDVIEQLGLDQDSLIKMSYLLGSDYCIGVKRVGIKSVFDRLKDVSEAE 552
>gi|242813984|ref|XP_002486279.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
gi|218714618|gb|EED14041.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
Length = 399
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E ++LL+L GVP+I AP EAEAQCA L ++D D F A + ++ F ++
Sbjct: 144 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 203
Query: 380 KSHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + R++ I L +L+G DY + VGP TAL+++ + +
Sbjct: 204 RKEPIQEIHLDKALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEK- 262
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ ++ P + + DD+P E + PD+ +
Sbjct: 263 ----VVEAI---------ESDPK-------KKYVIPDDWPYKEARELFFNPDVRKADDPQ 302
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W +PD++GL +F + G+S++RV
Sbjct: 303 CDFKWESPDVEGLIQFLVTEKGFSEDRV 330
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E ++LL+L GVP+I AP EAEAQCA L
Sbjct: 129 KFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVL 170
>gi|255713324|ref|XP_002552944.1| KLTH0D05126p [Lachancea thermotolerans]
gi|317374904|sp|C5DGG4.1|FEN1_LACTC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238934324|emb|CAR22506.1| KLTH0D05126p [Lachancea thermotolerans CBS 6340]
Length = 385
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
EA++LL+L G+P++ AP EAEAQCA L ++D D + + ++ F +
Sbjct: 138 EAKKLLRLMGLPYVEAPCEAEAQCAELAKAGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 197
Query: 380 KSHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
K + +I EL+ E+ I L +++G DY ++GVGPVTAL+++ + +
Sbjct: 198 KKEPIHEINTEILLQGLELSIEQFIDLGIMLGCDYCDSIRGVGPVTALKLIKEHKTLE-- 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
N +ES + W K+ +++P + +L PD+ +
Sbjct: 256 NIVEYIESGQANNKW------------------KVPENWPFKEARQLFLDPDVVKGSEVD 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L F + G+++ R+
Sbjct: 298 LKWSEPQEQELVDFMCKEKGFNEERI 323
>gi|317376211|sp|B8MNF2.2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN--FFDK 379
E ++LL+L GVP+I AP EAEAQCA L ++D D F A + ++ F ++
Sbjct: 140 ECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 199
Query: 380 KSHVLRYTAPDIRYY-FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ ++ D + R++ I L +L+G DY + VGP TAL+++ + +
Sbjct: 200 RKEPIQEIHLDKALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEK- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE++ ++ P + + DD+P E + PD+ +
Sbjct: 259 ----VVEAI---------ESDPK-------KKYVIPDDWPYKEARELFFNPDVRKADDPQ 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W +PD++GL +F + G+S++RV
Sbjct: 299 CDFKWESPDVEGLIQFLVTEKGFSEDRV 326
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K +R +T + + E ++LL+L GVP+I AP EAEAQCA L
Sbjct: 125 KFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVL 166
>gi|429848013|gb|ELA23547.1| flap structure-specific endonuclease [Colletotrichum
gloeosporioides Nara gc5]
Length = 542
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK-- 380
A+ L++LFG P APGEAEA+CA L+ V+++D D +FG +N+ +
Sbjct: 103 AKRLIRLFGFPVHDAPGEAEAECALLQQQGIVDAVLSEDVDTIMFGCTRTLRNWSSEGIR 162
Query: 381 -----SHVLRYTAPDIRYYFE----LTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL- 429
+HV Y D+ L RE ++ +AL+ G DY P G+ G G A E
Sbjct: 163 GSKTPTHVNLY---DVDVLLSAGTGLDREGMVLVALMSGGDYIPEGVPGCGVKLACEAAK 219
Query: 430 AKFSPS------DSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVI 483
A F S D P Q E R F + N+ T K + + + D+FP+ V+
Sbjct: 220 AGFGKSLCRLKIDEPVQ---FEEWRTFLKHQLRTNECGFFRT-KHKALAIPDEFPSRQVL 275
Query: 484 EAYLKPDINTNVQKLA-------WGTP-DLDGLRRFAANKFGWS 519
Y P + +N + +A W D+ GLR F F W+
Sbjct: 276 RHYTHP-VVSNAETIAQLRARTHWNRQIDVQGLRYFVDETFEWA 318
>gi|432328461|ref|YP_007246605.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135170|gb|AGB04439.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 339
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 21/146 (14%)
Query: 305 ELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
E T ++ +++R M+ EA++LL GVP++ AP E EAQ A + + D D
Sbjct: 116 EARTRAQQASFLTRDMVDEAKKLLDHMGVPWVQAPSEGEAQAAFMAQRGDAYASASQDFD 175
Query: 364 IWLFGARTVYKNFFDKKSHVLRYTAPDIRYY----------------FELTREKLIQLAL 407
LFG + +N L P R Y E+TRE+L+ + +
Sbjct: 176 SLLFGTPRLVRNMAITGKRKL----PRKRVYVEVKPEMLVLNETLKNLEITREQLVDIGI 231
Query: 408 LVGSDYTPGLQGVGPVTALEILAKFS 433
LVG+D+ PG++G+GP TAL+++ KF
Sbjct: 232 LVGTDFNPGIKGIGPKTALKLIKKFG 257
>gi|75775305|gb|AAI05256.1| Flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELIKFMCGEKQFSEERI 321
>gi|303388735|ref|XP_003072601.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
gi|303301742|gb|ADM11241.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 28/222 (12%)
Query: 309 DKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
DK++ + E + LL L G+PF AP EAEA CA L GV T+D D FG
Sbjct: 126 DKRKTKVTGMHVEECKRLLGLMGIPFETAPSEAEAYCAFLCKKKAVYGVATEDMDALTFG 185
Query: 369 ARTVYKNFFDKKSH---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ V +NF +S ++ Y P++ L E+ I L +L+G DY L+G+GP A
Sbjct: 186 SPVVLRNFSGSQSRKLPIVEYNLPELLESLSLEHEEFIDLCILLGCDYCGTLKGIGPKRA 245
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
L ++ K + Q+ +E PD R + ++ P +
Sbjct: 246 LGLIKKHGGIEKILQSENLEV-------------PDGWRYRDAQ--RIFGSLPEIGDARE 290
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+ ++WG+ D +G+ F + G+ RV++ +
Sbjct: 291 F----------NISWGSIDRNGIVSFLVEEKGFDLERVNRGI 322
>gi|332249905|ref|XP_003274094.1| PREDICTED: flap endonuclease 1 isoform 1 [Nomascus leucogenys]
gi|332249907|ref|XP_003274095.1| PREDICTED: flap endonuclease 1 isoform 2 [Nomascus leucogenys]
gi|441604271|ref|XP_004087863.1| PREDICTED: flap endonuclease 1 [Nomascus leucogenys]
Length = 380
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL +K HL +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWL---HKEAHHL---------------------FLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|81883819|sp|Q5XIP6.1|FEN1_RAT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53733451|gb|AAH83630.1| Fen1 protein [Rattus norvegicus]
gi|149062370|gb|EDM12793.1| flap structure-specific endonuclease 1 [Rattus norvegicus]
Length = 380
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
I E +RR +K P+ L ++ R + +L+P++ + +
Sbjct: 253 -HKSIEEIVRRLDP--SKYPVPENWLHKEARQL--------------FLEPEVLDPESVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P+ + L +F + +S+ R+
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|207343574|gb|EDZ71001.1| YKL113Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 261
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EAQ+LL L G+P+I+AP EAEAQCA L ++D D + + ++
Sbjct: 17 EAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 76
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++
Sbjct: 77 KKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHG----- 131
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
S+ + ++ +T K+ +D+P +L P+ I+ N
Sbjct: 132 -------SIEKIVEFIESGESNNTKW-------KIPEDWPYKQARMLFLDPEVIDGNEIN 177
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L + + +S+ RV
Sbjct: 178 LKWSPPKEKELIEYLCDDKKFSEERV 203
>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
Length = 379
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P+I AP EAEAQCA++ T+D D FG + +
Sbjct: 140 EAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKVFATATEDMDALTFGCNILLRRLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+K V + + EL+ ++ I L +++G DYT ++GVGP A+E++
Sbjct: 200 RKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGCDYTNSIKGVGPKRAIELI 250
>gi|26345786|dbj|BAC36544.1| unnamed protein product [Mus musculus]
Length = 411
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPSKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|380015033|ref|XP_003691516.1| PREDICTED: flap endonuclease 1-like [Apis florea]
Length = 383
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P+I AP EAEAQCA++ T+D D FG + +
Sbjct: 140 EAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKVFATATEDMDALTFGCNILLRRLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+K V + + EL+ ++ I L +++G DYT ++GVGP A+E++
Sbjct: 200 RKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGCDYTNSIKGVGPKRAIELI 250
>gi|333910543|ref|YP_004484276.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
gi|333751132|gb|AEF96211.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
Length = 326
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR ++++ ++E +++LL L GVP++ AP E E Q + + VI+ D D L+GA
Sbjct: 122 KRMNFLTKDIVENSKKLLDLMGVPYVNAPAEGEGQASYMAKKGDVFCVISQDYDALLYGA 181
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI 428
+ +N K + ++ ++ + LI +A+L+G+DY P G++G+GP ALEI
Sbjct: 182 PRIVRNLTATKEELELIELENVLNELGISHDDLIDMAILIGTDYNPKGVKGIGPKKALEI 241
Query: 429 L 429
+
Sbjct: 242 V 242
>gi|296218462|ref|XP_002755459.1| PREDICTED: flap endonuclease 1 [Callithrix jacchus]
Length = 380
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKRLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASES 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K + H + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHK----EAH--------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|444513068|gb|ELV10260.1| Flap endonuclease 1 [Tupaia chinensis]
Length = 380
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L++E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLSQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|308806964|ref|XP_003080793.1| FEN-1 (ISS) [Ostreococcus tauri]
gi|116059254|emb|CAL54961.1| FEN-1 (ISS) [Ostreococcus tauri]
Length = 428
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VS++ +E +L QL G+P AP EAEA CA++ V T+D D F A
Sbjct: 168 KRTVRVSKEQSMEVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLVWAVGTEDMDTLTFAA 227
Query: 370 RTVYKNFFDKKSH---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
V +N KS VL + LT ++ I L +L G DYT ++GVGP TAL
Sbjct: 228 PRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQFIDLCILCGCDYTDTIRGVGPKTAL 287
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + + + E K+W + R+L F N V++
Sbjct: 288 KLIKEHGSIEKILEAIDTEKYPPPKDW-------EFAGAREL--------FKNPEVMDV- 331
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
IN L+W PD +GL F + + ++RV I K
Sbjct: 332 --SGIN-----LSWKAPDEEGLVEFLVKEKQFQEDRVRGVCARIRK 370
>gi|379991146|ref|NP_001244014.1| flap endonuclease 1 [Equus caballus]
Length = 380
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPETVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|383859686|ref|XP_003705323.1| PREDICTED: flap endonuclease 1-like [Megachile rotundata]
Length = 383
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ AP EAEAQCA+L T+D D FG + +
Sbjct: 140 EAKQLLKLMGIPYVEAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + + L +++ I L +++G DYT ++GVGP A+E++ +
Sbjct: 200 RKMPVQEFHHDKVLEGLGLNQDEFIDLCIMLGCDYTNSIKGVGPKRAMELIKTHRSLEKI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+N ++W + +L P V+ +E +
Sbjct: 260 LENLDTNKYPVPEDW-------------NYKQARLLFQEPEVANVEEI----------EF 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRV 523
W PD DGL F +S+ RV
Sbjct: 297 KWSEPDEDGLVNFLCGDKQFSEERV 321
>gi|357624246|gb|EHJ75100.1| flap endonuclease-1 [Danaus plexippus]
Length = 424
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 47/276 (17%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLE--------LGTDKKRR---PYVSRK 319
+T+Q EA++LL+L G+P + AP EAEAQCA L L RR P +R
Sbjct: 134 VTQQHGAEARQLLKLMGIPVVEAPCEAEAQCAELTSEGNLVDGLTNPLLRRGPIPAAARA 193
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF-- 377
L + G P P + G V T+D D FGA + ++
Sbjct: 194 RLPVTHTEVISGPPVGGVPVK----------GGKVYAVATEDMDALTFGANVLLRHLTFS 243
Query: 378 -DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+K V + + EL + + I L +L+G DY ++G+GP A+E++ + +
Sbjct: 244 EARKMPVQEFHLDQVLRGLELEQTEFIDLCILLGCDYCGSIKGIGPKRAIELIKQHRSIE 303
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
N + +NW + R+L F V EA D+
Sbjct: 304 QVLHNIDTKKYSPPENW-------EYENARRL--------FQQPEVTEAK---DV----- 340
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+L W PD +GL +F +++ RV +MK
Sbjct: 341 ELKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMK 376
>gi|346467817|gb|AEO33753.1| hypothetical protein [Amblyomma maculatum]
Length = 266
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 20/149 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF--FDK 379
E + L+ + G+P +AE+ CA L G IT+ SD +L+GA+TVY+ F ++
Sbjct: 68 ERKTLVDILGLPCCQIDRKAESVCAFLNEKGTVDGCITEGSDAFLYGAQTVYRKFNIEEE 127
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
+ Y DI +L R+KLI L +LVGSD G+ GVG VTA ++L +F D
Sbjct: 128 DPEIDEYNISDIEKKADLNRKKLIALNMLVGSD---GIPGVGMVTAGQLLKEFGDDD--- 181
Query: 440 QNYIVESMRRFKNWL------AKKNKPDT 462
++R + W A ++KP T
Sbjct: 182 ------PIKRLRRWTPNEVPEASQDKPST 204
>gi|328874795|gb|EGG23160.1| XPG [Dictyostelium fasciculatum]
Length = 308
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR +RK E +LL L G+P + AP EAEAQCA L G ++D D FG
Sbjct: 144 KRTTSATRKQNEECIKLLTLMGIPVVRAPCEAEAQCAELVKGGKAWASGSEDMDSLAFGT 203
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ + +N KK+ + + + Y T ++ I L +L+G DY ++G+GPV A
Sbjct: 204 KILLRNLTASDQKKNPLWEFDHEKLLYGTGFTHDQFIDLCILLGCDYCESIRGIGPVRAF 263
Query: 427 EILAK 431
E++ K
Sbjct: 264 ELMQK 268
>gi|269859663|ref|XP_002649556.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
gi|317374899|sp|B7XHS8.1|FEN1_ENTBH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220067107|gb|EED44575.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
Length = 358
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF---FD 378
E Q+ L+L +P+++AP EAEA CA L V T+D D FG+ + +NF
Sbjct: 139 ECQKTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDMDSLCFGSPLLLRNFNTALS 198
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS 437
+K V Y I + T E+ + L +L+G DY+ ++GVG A E + K+ D+
Sbjct: 199 QKLPVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIRGVGMKRAFEYIKKYKSIDN 257
>gi|154339662|ref|XP_001565788.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|317374905|sp|A4HFE4.1|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 395
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 27/232 (11%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ +E +++LLQL GVP I AP EAEAQCA L V T+D D FG+
Sbjct: 132 KRTVRVSREQIEESKKLLQLMGVPVIQAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGS 191
Query: 370 RTVYK--NFFD-KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ + N D KK + ++ L+ ++ + L +L+G DY P + G+GP A
Sbjct: 192 TVMLRHLNISDAKKRPIAEIHLDEVLQATGLSMDQFVDLCILLGCDYVPKVPGIGPQRAW 251
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
E + ++ N +ES+ K+ + P R+ R LN P V+ E
Sbjct: 252 EGIQRYG-----NIESFLESLDAAKHMV-----PPDFCYREARAFFLN---PEVTRAEEI 298
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
DI + PD GL +F + ++ +RV++ + + +++++
Sbjct: 299 ---DIR-------FSEPDEAGLIQFLVKEKLFNPDRVNKGIARLRAALTKKT 340
>gi|440901464|gb|ELR52399.1| Flap endonuclease 1 [Bos grunniens mutus]
Length = 380
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|317376169|sp|B3LQY3.1|FEN1_YEAS1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190409721|gb|EDV12986.1| structure-specific endonuclease RAD27 [Saccharomyces cerevisiae
RM11-1a]
Length = 382
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EAQ+LL L G+P+I+AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSET 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++ K S
Sbjct: 198 KKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLI-KTHGSIEK 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+I W K+ +D+P +L P+ I+ N
Sbjct: 257 IVEFIESGESNNTKW------------------KIPEDWPYKQARMLFLDPEVIDGNEIN 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L + + +S+ RV
Sbjct: 299 LKWSPPKEKELIEYLCDDKKFSEERV 324
>gi|148709394|gb|EDL41340.1| flap structure specific endonuclease 1, isoform CRA_a [Mus
musculus]
Length = 396
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 156 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 215
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 216 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 268
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 269 -HKSIEEIVRRLDPSKYPVPENWLHKEAQ------------------------QLFLEPE 303
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 304 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 337
>gi|403255047|ref|XP_003920260.1| PREDICTED: flap endonuclease 1 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403255049|ref|XP_003920261.1| PREDICTED: flap endonuclease 1 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASES 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
I E +RR K P+ L R+ + +L+P++ + +
Sbjct: 253 -HKSIEEIVRRLDP--TKYPVPENWLHREAHQL--------------FLEPEVLDPESVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P+ + L +F + +S+ R+
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|330689547|pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
gi|330689551|pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 139 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 198
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 199 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 251
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K + H + +L+P+
Sbjct: 252 -HKSIEEIVRRLDPNKYPVPENWLHK----EAH--------------------QLFLEPE 286
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 287 VLDPESVELKWSEPNEEELIKFMCGEKQFSEERI 320
>gi|26335423|dbj|BAC31412.1| unnamed protein product [Mus musculus]
Length = 380
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPSKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|409075870|gb|EKM76246.1| hypothetical protein AGABI1DRAFT_9336, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 528
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 31/194 (15%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN---------- 375
+++ FG + APGEAEA+ A L G+++DD D +LFGA TV +N
Sbjct: 111 IVEAFGFEWRTAPGEAEAELAYLNRIGVIDGILSDDVDNFLFGALTVIRNQSNNLSGNKS 170
Query: 376 -------FFDKKSHVLRYTAPDIRYY--FELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
D K+H + DI+ + +L+R LI + LL G DY GL+ G VTA
Sbjct: 171 NPVVNSEGKDDKNHTRVFRLQDIQDHEDIQLSRGGLILIGLLSGGDYEEGLRKCGMVTA- 229
Query: 427 EILAK-------FSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLN----D 475
LA+ F ++ +Q +V+ + ++ L ++ K ++ K R + L+ D
Sbjct: 230 HSLARCGFGDTLFEAANKLSQEELVDFLHTWREELRQELKTNSKGYLKNRQIALSKSVPD 289
Query: 476 DFPNVSVIEAYLKP 489
FPN+ V+ +Y +P
Sbjct: 290 TFPNIDVLLSYAQP 303
>gi|355570852|ref|ZP_09042122.1| Flap structure-specific endonuclease [Methanolinea tarda NOBI-1]
gi|354826134|gb|EHF10350.1| Flap structure-specific endonuclease [Methanolinea tarda NOBI-1]
Length = 333
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 49/229 (21%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKKS 381
+++L+ L G+P+I AP E EAQ A + + + V++ D D LFGA + +N K
Sbjct: 136 SRQLITLLGLPWIQAPSEGEAQAAYMVMRGDARYVVSQDYDTLLFGAPVLVRNLTVSGKR 195
Query: 382 HVL---------RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
V R + E++RE LI++ LLVG+D+ PG++GVG TAL ++
Sbjct: 196 KVRGRTLAIMPERIVLSSVLTGLEISREDLIRVGLLVGTDFNPGIRGVGAKTALRMV--- 252
Query: 433 SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVS---VIEAYLKP 489
+N E + R + P V + + KP
Sbjct: 253 -------RNGEFEQVMRERQ-------------------------PGVDWEEIFHFFAKP 280
Query: 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+ T L W PD +G+ R + F +S RV+ L + Q++
Sbjct: 281 PV-TEEYSLHWRPPDREGILRMLCDGFDFSPERVENALGGVKTASGQKT 328
>gi|349579452|dbj|GAA24614.1| K7_Rad27p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 382
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EAQ+LL L G+P+I+AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++ K S
Sbjct: 198 KKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLI-KTHGSIEK 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+I W K+ +D+P +L P+ I+ N
Sbjct: 257 IVEFIESGESNNTKW------------------KIPEDWPYKQARMLFLDPEVIDGNEIN 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L + + +S+ RV
Sbjct: 299 LKWSPPKEKELIEYLCDDKKFSEERV 324
>gi|46048490|ref|NP_032025.2| flap endonuclease 1 [Mus musculus]
gi|410025484|ref|NP_001258543.1| flap endonuclease 1 [Mus musculus]
gi|410025486|ref|NP_001258544.1| flap endonuclease 1 [Mus musculus]
gi|16307328|gb|AAH10203.1| Flap structure specific endonuclease 1 [Mus musculus]
gi|26337949|dbj|BAC32660.1| unnamed protein product [Mus musculus]
gi|26347483|dbj|BAC37390.1| unnamed protein product [Mus musculus]
gi|53791234|dbj|BAD52443.1| flap endonuclease 1 [Mus musculus]
gi|74145457|dbj|BAE36169.1| unnamed protein product [Mus musculus]
gi|74150381|dbj|BAE32236.1| unnamed protein product [Mus musculus]
gi|74185061|dbj|BAE39135.1| unnamed protein product [Mus musculus]
gi|148709396|gb|EDL41342.1| flap structure specific endonuclease 1, isoform CRA_c [Mus
musculus]
Length = 380
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPSKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|20071071|gb|AAH27295.1| Fen1 protein [Mus musculus]
Length = 380
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPSKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|291409580|ref|XP_002721064.1| PREDICTED: flap structure-specific endonuclease 1 [Oryctolagus
cuniculus]
Length = 380
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPSKYAVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|432911452|ref|XP_004078686.1| PREDICTED: probable flap endonuclease 1 homolog [Oryzias latipes]
Length = 343
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 325 ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK-SHV 383
E+L+ GVP + APG+AE CASL V ++D D FGA + + KK S +
Sbjct: 112 EVLKHLGVPVVQAPGDAEGLCASLVREGRAHAVASEDMDTLPFGANVLIRQLNAKKDSEI 171
Query: 384 LRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
+ Y+ P + ++ E+L+ L +L+G DY + G+GP AL ++ K
Sbjct: 172 VEYSLPKLLEALRISLEELVDLCILLGCDYCDKIPGLGPKRALALIQK 219
>gi|367003685|ref|XP_003686576.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
gi|357524877|emb|CCE64142.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
Length = 380
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ LL+L G+P++ AP EAE+QCA L ++D D + + ++
Sbjct: 138 EAKHLLELMGIPYVNAPCEAESQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + ELT E+ I L +++G DY ++GVGPVTAL+++ + +
Sbjct: 198 KKEPIHEINTETVLEGLELTLEQFIDLGIMLGCDYCESIRGVGPVTALKLIKEHGSLEKI 257
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+ VES W +N P ++ R++ LN D VI+ DI+ L
Sbjct: 258 IE--FVESPDSNSKWKIPENWP----YKEARDLFLNPD-----VIDG---ADID-----L 298
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRV 523
W P + L + +S+ RV
Sbjct: 299 KWKPPQEEALVSYLCGDKKFSEERV 323
>gi|344258300|gb|EGW14404.1| Flap endonuclease 1 [Cricetulus griseus]
Length = 412
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 172 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 231
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 232 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 284
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 285 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 319
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 320 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 353
>gi|389740276|gb|EIM81467.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 528
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P +VAP EAEAQCA L G ++D D F A T++++
Sbjct: 141 ECQRLLRLMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFSAPTLFRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
KK+ + T + + I L +L+G DY ++GVGP TAL+++
Sbjct: 201 KKAPITEVTLSKALEGLGMKMPQFIDLCILLGCDYLEPIKGVGPKTALKLI 251
>gi|75057714|sp|Q58DH8.1|FEN1_BOVIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|61553325|gb|AAX46387.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61553832|gb|AAX46466.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61554710|gb|AAX46602.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|296471658|tpg|DAA13773.1| TPA: flap endonuclease 1 [Bos taurus]
Length = 380
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELIKFMCGEKQFSEERI 321
>gi|350416440|ref|XP_003490949.1| PREDICTED: flap endonuclease 1-like [Bombus impatiens]
Length = 381
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 11/115 (9%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LLQL G+P+I AP EAEAQCA+L T+D D FG + + ++
Sbjct: 140 EAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEA 199
Query: 382 HVLRYTAPDIRYYFE-------LTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ P ++F+ L ++ I L +++G DYT ++GVGP A+E++
Sbjct: 200 RKM----PVQEFHFDKVLKDLGLNHDEFIDLCIMLGCDYTSSIKGVGPKRAIELI 250
>gi|6322736|ref|NP_012809.1| Rad27p [Saccharomyces cerevisiae S288c]
gi|140964|sp|P26793.1|FEN1_YEAST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1; AltName: Full=RAD2
homolog nuclease 1; Short=RTH1 nuclease; AltName:
Full=Structure-specific endonuclease RAD27
gi|317376170|sp|C7GVJ8.1|FEN1_YEAS2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376171|sp|A6ZZK4.1|FEN1_YEAS7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376172|sp|C8ZC62.1|FEN1_YEAS8 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|248392|gb|AAB21998.1| RAD2 homolog [Saccharomyces cerevisiae]
gi|486190|emb|CAA81953.1| RAD27 [Saccharomyces cerevisiae]
gi|151941690|gb|EDN60052.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
gi|256269907|gb|EEU05165.1| Rad27p [Saccharomyces cerevisiae JAY291]
gi|259147728|emb|CAY80978.1| Rad27p [Saccharomyces cerevisiae EC1118]
gi|285813148|tpg|DAA09045.1| TPA: Rad27p [Saccharomyces cerevisiae S288c]
gi|323347750|gb|EGA82014.1| Rad27p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764563|gb|EHN06085.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298324|gb|EIW09422.1| Rad27p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 382
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EAQ+LL L G+P+I+AP EAEAQCA L ++D D + + ++
Sbjct: 138 EAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++ K S
Sbjct: 198 KKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLI-KTHGSIEK 256
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+I W K+ +D+P +L P+ I+ N
Sbjct: 257 IVEFIESGESNNTKW------------------KIPEDWPYKQARMLFLDPEVIDGNEIN 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L + + +S+ RV
Sbjct: 299 LKWSPPKEKELIEYLCDDKKFSEERV 324
>gi|194377686|dbj|BAG63206.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 104 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 163
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 164 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 216
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K + H + +L+P+
Sbjct: 217 -HKSIEEIVRRLDPNKYPVPENWLHK----EAH--------------------QLFLEPE 251
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 252 VLDPESVELKWSEPNEEELIKFMCGEKQFSEERI 285
>gi|257077017|ref|ZP_05571378.1| flap endonuclease-1 [Ferroplasma acidarmanus fer1]
Length = 339
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 44/237 (18%)
Query: 312 RRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 370
R Y++ ++ E+++LL + GVP++ AP E EAQ + + VI+ D D L GAR
Sbjct: 123 RINYITADIVSESKKLLDMMGVPWVQAPSEGEAQASYMSKVGAVDSVISQDYDCLLLGAR 182
Query: 371 TVYKNFFDKKSHVLRYTAPDIRYYFE------------LTREKLIQLALLVGSDYTPGLQ 418
V +NF + T I E +T+++LI + +LVG+D+ PG++
Sbjct: 183 RVLRNFTMYGRRRISGTGKFINITPEIIDLKENLDNLGITQDQLIGIGILVGTDFNPGIR 242
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFP 478
G+G T L ++ K+ +ES+ L +KNK +L
Sbjct: 243 GIGAKTGLSLIKKYGD---------IESV------LKQKNKTIDNLDE------------ 275
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ E +L P + + +L + P + + + + +S+NR++ L I K S
Sbjct: 276 ---IKEFFLNPPVE-DTGELKFAPPYREKIIEYLCAEHSFSENRINSILDRIEKNYS 328
>gi|4758356|ref|NP_004102.1| flap endonuclease 1 [Homo sapiens]
gi|114637922|ref|XP_001149352.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan troglodytes]
gi|297688500|ref|XP_002821719.1| PREDICTED: flap endonuclease 1 isoform 1 [Pongo abelii]
gi|297688502|ref|XP_002821720.1| PREDICTED: flap endonuclease 1 isoform 2 [Pongo abelii]
gi|332836633|ref|XP_001149490.2| PREDICTED: flap endonuclease 1 isoform 4 [Pan troglodytes]
gi|397516600|ref|XP_003828512.1| PREDICTED: flap endonuclease 1 isoform 1 [Pan paniscus]
gi|397516602|ref|XP_003828513.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan paniscus]
gi|410045196|ref|XP_003951955.1| PREDICTED: flap endonuclease 1 [Pan troglodytes]
gi|426368750|ref|XP_004051365.1| PREDICTED: flap endonuclease 1 isoform 1 [Gorilla gorilla gorilla]
gi|426368752|ref|XP_004051366.1| PREDICTED: flap endonuclease 1 isoform 2 [Gorilla gorilla gorilla]
gi|426368754|ref|XP_004051367.1| PREDICTED: flap endonuclease 1 isoform 3 [Gorilla gorilla gorilla]
gi|729475|sp|P39748.1|FEN1_HUMAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNase
IV; AltName: Full=Flap structure-specific endonuclease
1; AltName: Full=Maturation factor 1; Short=MF1;
Short=hFEN-1
gi|21668123|gb|AAM74238.1|AF523117_1 flap structure-specific endonuclease 1 [Homo sapiens]
gi|642090|gb|AAA91331.1| endonuclease [Homo sapiens]
gi|704377|gb|AAB32522.1| DNase IV=nuclear 42 kda 5' -> 3' exonuclease [human, HeLa cells,
Peptide, 380 aa]
gi|3169155|gb|AAC23394.1| FEN1_HUMAN [Homo sapiens]
gi|3980293|emb|CAA54166.1| flap endonuclease-1 [Homo sapiens]
gi|12653113|gb|AAH00323.1| Flap structure-specific endonuclease 1 [Homo sapiens]
gi|49168608|emb|CAG38799.1| FEN1 [Homo sapiens]
gi|54695918|gb|AAV38331.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|60813555|gb|AAX36265.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|60813577|gb|AAX36266.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355090|gb|AAX41100.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355958|gb|AAX41194.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61362985|gb|AAX42314.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|119594378|gb|EAW73972.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|189053461|dbj|BAG35627.1| unnamed protein product [Homo sapiens]
gi|208968397|dbj|BAG74037.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|410220904|gb|JAA07671.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410267972|gb|JAA21952.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410301536|gb|JAA29368.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410335329|gb|JAA36611.1| flap structure-specific endonuclease 1 [Pan troglodytes]
Length = 380
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K + H + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHK----EAH--------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELIKFMCGEKQFSEERI 321
>gi|156054070|ref|XP_001592961.1| hypothetical protein SS1G_05883 [Sclerotinia sclerotiorum 1980]
gi|154703663|gb|EDO03402.1| hypothetical protein SS1G_05883 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 749
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 19/217 (8%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
L +ELL+LFG + +APGEAEA+CA L+ V+++D D +FG+ ++++ +K
Sbjct: 102 LMTKELLKLFGFEYHIAPGEAEAECALLQREGVVDAVLSEDVDTLMFGSGLTFRSWSSEK 161
Query: 381 -------SHVLRYTAPDIRYYFE-LTREKLIQLALLVGSDY-TPGLQGVGPVTALEIL-A 430
+HV Y A + L RE +I +AL+ G DY T G+ G G A E A
Sbjct: 162 KSGAGTPTHVNVYDAKATKAGRSGLDREGMILVALMSGGDYKTEGIPGCGVKVACEAARA 221
Query: 431 KFSPSDSPNQNYIVESMRRFKNWLAKK--NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLK 488
F + + ++ LA + K + +++ +DFP+ V+ Y
Sbjct: 222 GFGKRLCQIRREDAAAYDEWRADLAHELFTNESKFFRTKRKALQIPEDFPDRKVLGYYTH 281
Query: 489 PDINT--NVQKL----AW-GTPDLDGLRRFAANKFGW 518
P +++ V++L W G ++ LR F A+ F W
Sbjct: 282 PVVSSLAKVERLRDQIIWEGDINVPKLRHFVADAFEW 318
>gi|323332740|gb|EGA74145.1| Rad27p [Saccharomyces cerevisiae AWRI796]
Length = 370
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EAQ+LL L G+P+I+AP EAEAQCA L ++D D + + ++
Sbjct: 126 EAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEA 185
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++ K S
Sbjct: 186 KKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLI-KTHGSIEK 244
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+I W K+ +D+P +L P+ I+ N
Sbjct: 245 IVEFIESGESNNTKW------------------KIPEDWPYKQARMLFLDPEVIDGNEIN 286
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P L + + +S+ RV
Sbjct: 287 LKWSPPKEKELIEYLCDDKKFSEERV 312
>gi|61365237|gb|AAX42675.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61365242|gb|AAX42676.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61369466|gb|AAX43341.1| flap structure-specific endonuclease 1 [synthetic construct]
Length = 381
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K + H + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHK----EAH--------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELIKFMCGEKQFSEERI 321
>gi|395852526|ref|XP_003798789.1| PREDICTED: flap endonuclease 1 [Otolemur garnettii]
Length = 380
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 40/212 (18%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS- 437
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K +
Sbjct: 200 KKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEI 259
Query: 438 -----PNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI- 491
PN+ I E NWL K + H + +L+P++
Sbjct: 260 VRRLDPNKYPIPE------NWLHK----EAH--------------------QLFLEPEVL 289
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ +L W P+ + L +F + +S+ R+
Sbjct: 290 DPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|387916082|gb|AFK11650.1| Flap endonuclease 1-B [Callorhinchus milii]
Length = 382
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 34/239 (14%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML--------EAQELLQLFGVPFIVAPGEAEAQCAS 347
EAE Q A + D + +++++ E + LL L G+P++ AP EAEA CA+
Sbjct: 106 EAEKQLAQAQEAGDSENVERFNKRLVKVTKQHNEECKTLLTLMGIPYLEAPCEAEASCAA 165
Query: 348 LELGNHTQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQ 404
L G T+D D FG + + KK + + I L++E+ I
Sbjct: 166 LVKSGKVYGTATEDMDGLAFGTTILLRRMTASEAKKLPIQEFHLNKILQETGLSQEEFID 225
Query: 405 LALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHL 464
L +L+G DY ++G+GP A+E++ Q+ +E + + + K P
Sbjct: 226 LCILLGCDYCETIRGIGPKRAIELI---------RQHRCIEEVLKHIDG-NKYTVPGDWA 275
Query: 465 TRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ R++ L D NV +E L W P+ D L F G+S++R+
Sbjct: 276 YSQARSLFLTPDVVNVDDVE-------------LKWTEPEEDKLVSFLCEDKGFSEDRI 321
>gi|452822684|gb|EME29701.1| flap endonuclease-1 [Galdieria sulphuraria]
Length = 377
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 34/215 (15%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---- 377
+++ LL+L G+P + AP EAEAQCASL N ++D D FG+ V + +
Sbjct: 140 QSKRLLRLMGIPILEAPEEAEAQCASLCKENLVYATASEDMDSLTFGSSKVIRQLWVGAT 199
Query: 378 ----DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
K H L ++ + E+ I L +L G DY ++G+GP A ++ K
Sbjct: 200 STAEKKGIHPLEFSLEKALLELNFSYEQFIDLCILCGCDYLDSIRGIGPYKAFNLIRKHG 259
Query: 434 PSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
N +E + K K D + D FP E +LKP +++
Sbjct: 260 -----NLEGALEEI---------KEKHD-----------VPDHFPYDKARELFLKPKVHS 294
Query: 494 -NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+ L W PD G+ + ++ ++++ + + L
Sbjct: 295 PSSVVLEWSPPDEQGIIQMLVHESNFNEDNIRKAL 329
>gi|148709395|gb|EDL41341.1| flap structure specific endonuclease 1, isoform CRA_b [Mus
musculus]
Length = 432
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 192 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 251
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 252 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 304
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 305 -HKSIEEIVRRLDPSKYPVPENWLHKEAQ------------------------QLFLEPE 339
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 340 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 373
>gi|78042574|ref|NP_001030285.1| flap endonuclease 1 [Bos taurus]
gi|61553249|gb|AAX46374.1| flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEKELIKFMCGEKQFSEERI 321
>gi|226294510|gb|EEH49930.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb18]
Length = 528
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL+L G+P+I AP EAEAQCA L ++D D F + + ++
Sbjct: 273 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQ 332
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ + L +L+G DY + +GP TAL+++ D
Sbjct: 333 RKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLI-----RDHG 387
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-- 496
+ +VE++ ++ P + + +D+P E + PD+
Sbjct: 388 SLEKVVEAI---------ESDPK-------KKYVIPEDWPYKDARELFFDPDVRKADHPD 431
Query: 497 -KLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + +S++RV
Sbjct: 432 CDFKWEAPDVEGLVKFLVEEKAFSEDRV 459
>gi|441432364|ref|YP_007354406.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
moumouvirus]
gi|440383444|gb|AGC01970.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
moumouvirus]
Length = 431
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 9/117 (7%)
Query: 318 RKMLEAQELLQLFGVPFIVAPGEAEAQCASL-----ELGN-HTQGVITDDSDIWLFGART 371
R + EAQ LL L G+P+IVAPGEA+ C+ L E G+ + +GV +DDSD+ GA
Sbjct: 136 RDIQEAQILLDLMGIPYIVAPGEADVVCSWLAARRDENGDRYVKGVCSDDSDMLALGAPY 195
Query: 372 VYKN---FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
++K+ F K V + LT + L +L+G DY ++G+GP TA
Sbjct: 196 LFKDMLKFMSKNKEVTIISLNKTLTKTGLTMRQFTDLCVLLGCDYCDNIKGIGPKTA 252
>gi|61680058|pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680059|pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680060|pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 139 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 198
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 199 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 251
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K + H + +L+P+
Sbjct: 252 -HKSIEEIVRRLDPNKYPVPENWLHK----EAH--------------------QLFLEPE 286
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 287 VLDPESVELKWSEPNEEELIKFMCGEKQFSEERI 320
>gi|116200179|ref|XP_001225901.1| hypothetical protein CHGG_08245 [Chaetomium globosum CBS 148.51]
gi|88179524|gb|EAQ86992.1| hypothetical protein CHGG_08245 [Chaetomium globosum CBS 148.51]
Length = 803
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS- 381
+ L++ FG APGEAEA+CA LE V+++D D +FG R +N+ + S
Sbjct: 58 GKRLIRHFGFAIHDAPGEAEAECALLEQQGVVDAVLSEDVDTIMFGCRKTLRNWSSEGSR 117
Query: 382 ------HVLRYTAPDIRY-YFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEI----- 428
HV Y A + +L RE ++ +AL+ G DY P G+ G G A E
Sbjct: 118 GSKTPTHVSVYDAAAVAAGTSKLDREGMVLVALMSGGDYLPEGVPGCGVKVACEAARGGF 177
Query: 429 ---LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
L + +D ++ ++ R + L + N+ TR + +++ + FPN+ ++
Sbjct: 178 GRDLCRIKKAD---RDGLMAWKARLLHEL-RTNESGIFRTRH-KALEIPESFPNMEILRY 232
Query: 486 YLKPDIN--TNVQKL-----AWGTPDLDGLRRFAANKFGW 518
Y P ++ T +++L T D+ GLR FA F W
Sbjct: 233 YTHPVVSRETTIERLKKEFPPASTVDVVGLREFARETFDW 272
>gi|432089490|gb|ELK23431.1| Flap endonuclease 1 [Myotis davidii]
Length = 380
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLAPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P + L +F + +S+ R+
Sbjct: 288 VLDPEAVELKWSEPKEEELVKFMCGEKQFSEERI 321
>gi|354503001|ref|XP_003513570.1| PREDICTED: flap endonuclease 1-like [Cricetulus griseus]
Length = 380
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
gi|166973698|sp|A8AAC1.1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
Length = 350
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 50/227 (22%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA+ LL+ GVP++ AP E EAQ A + + D D LFG+ + +N +
Sbjct: 138 EAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQDYDSLLFGSPRLVRNL----A 193
Query: 382 HVLRYTAPDIRYYFE----------------LTREKLIQLALLVGSDYTPGLQGVGPVTA 425
R P+ Y E +TRE+L+ +A+L+G+DYTPG++GVGP TA
Sbjct: 194 VSGRRKLPNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLIGTDYTPGVKGVGPKTA 253
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
L + + L R L + ++D +
Sbjct: 254 LRYVKSYG-----------------------------DLERVLTALGVDDKELYLEAYNF 284
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+L P + T+ +L W PD + + +++ RV + + +MK
Sbjct: 285 FLNPQV-TDDYELVWRRPDPQKIIEILVYEHDFNEERVRKAIERLMK 330
>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|317374930|sp|Q75DS8.2|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|374106098|gb|AEY95008.1| FABL052Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 29/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL L G+P++ APGEAEAQCA L ++D D + + ++
Sbjct: 138 EAKKLLGLMGIPYVDAPGEAEAQCAELAKKGKVFAAASEDMDTLCYRTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + L++E+L+ L +++G DY ++GVGPVTAL+++ + ++
Sbjct: 198 RKEPIHEIDTELVLQGLGLSQEQLVDLGIMLGCDYCESIKGVGPVTALKLIKEHGSLEN- 256
Query: 439 NQNYIVESMRRFKN--WLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNV 495
IVE + N W K+ +++P +L+PD+ +
Sbjct: 257 ----IVEFISSGGNAKW------------------KVPENWPYKEARALFLQPDVLDAEG 294
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P + L F + G++++R+
Sbjct: 295 VSLKWEEPKEEELIAFMCKEKGFNEDRI 322
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 278 EAQELLQLFGVPFIVAPGEAEAQCASL 304
EA++LL L G+P++ APGEAEAQCA L
Sbjct: 138 EAKKLLGLMGIPYVDAPGEAEAQCAEL 164
>gi|393229980|gb|EJD37593.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 101/229 (44%), Gaps = 33/229 (14%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
AQ ++ FG + APGEAEA A L V TDD D +LFGA TV +N S
Sbjct: 111 AQNIISSFGFEWRKAPGEAEADLAWLNSMGLIDAVWTDDGDAFLFGATTVMRNPGKNLSS 170
Query: 383 VLR-----------------YTAPDI--RYYFELTREKLIQLALLVGSDYTPGLQGVGPV 423
+R + A D+ L R LI +ALL G DY G+ GVG +
Sbjct: 171 NIRSPALTTEGKQNENQVHVFHAEDLIDNENIRLDRNGLILVALLRGGDYHEGIDGVG-M 229
Query: 424 TALEILAKFSPSD-------SPNQNYIVESMRRFKNWLAKKNKPDT--HLTRKLRNVKLN 474
T LA+ D SP+ + + ++++ L ++ + D+ HL R+ V +
Sbjct: 230 TIAHALARAGFGDTLAAAMQSPDVETLAGMISQWRSELVQELRTDSQGHLGRRHPAVAAS 289
Query: 475 D--DFPNVSVIEAYLKPDI-NTNVQKLAW-GTPDLDGLRRFAANKFGWS 519
DFP++ V AY P + N + W P+L GL + F W
Sbjct: 290 IPLDFPDLDVYNAYANPVVSNLGTVAINWYRLPNLTGLAQACERHFEWG 338
>gi|168014475|ref|XP_001759777.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374864|sp|A9S0B8.1|FEN11_PHYPA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|162688907|gb|EDQ75281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 29/207 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ ++LL+L GVP + AP EAEA+CASL V ++D D +G+ ++ + S
Sbjct: 141 DCRKLLRLMGVPVVEAPSEAEAECASLCKAEKVFAVASEDMDSLTYGSTRFLRHLMEPTS 200
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L DI E L ++ + L +L G DY ++G+GP TAL+++ +
Sbjct: 201 RKLPVLEFDIAKVLEGLGLNMDQFVDLCILCGCDYCDTIRGIGPQTALKMIRQHG----- 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN--TNVQ 496
+ ++E++ + + ++ D +P + +P + V
Sbjct: 256 SLEIVLENLNKDR-------------------YQVPDPWPYQEARRLFKEPLVTPPEKVP 296
Query: 497 KLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ W PD +GLR+ + G++ +RV
Sbjct: 297 EFKWTAPDTEGLRQLLVEENGFNNDRV 323
>gi|392585979|gb|EIW75317.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 331
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 23/184 (12%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF------ 377
++ +Q +G + APGEAEA+ A++ NH GV+T DSD+ LFGA + ++
Sbjct: 72 KDFIQAYGFNYHTAPGEAEAELAAMNRMNHVDGVLTSDSDVVLFGAGCIIRDVLRLIDGD 131
Query: 378 -DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+KK V +T IR +R +L+ +ALL G+DY G G+G + LAK +
Sbjct: 132 DNKKHQVEIHTEESIRASGWNSR-RLLLVALLSGADYDMGC-GIGVASQ---LAKSELGE 186
Query: 437 SPNQNYIV----ESMRRFKNWLAK-----KNKPDTHLTRKLRNVKLN--DDFPNVSVIEA 485
Q Y+ E +R +W +N + LTRK + N + FP+++V+
Sbjct: 187 KLVQAYMGCPAPEFLRFCTDWRRDLRDMLRNNTEGTLTRKHGGIADNVRNTFPSLTVLGN 246
Query: 486 YLKP 489
YL P
Sbjct: 247 YLCP 250
>gi|312375261|gb|EFR22667.1| hypothetical protein AND_14372 [Anopheles darlingi]
Length = 738
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 113/276 (40%), Gaps = 56/276 (20%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
T++KR + + + +ELL G+ + APGEAEA CA L GVI+ DSD + +
Sbjct: 113 TEQKRNRF-HHVLKQCEELLSAMGLVCVQAPGEAEALCAYLNRDALIDGVISQDSDCFAY 171
Query: 368 GARTVYKNFFDKKS-------HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQG 419
GA V++NF ++ + R + +R L +EK++ +ALL G DY P G+ G
Sbjct: 172 GAVRVFRNFCASQNGGSVDVYDLERANSAGLR----LGQEKIVAMALLSGCDYCPAGVAG 227
Query: 420 VGPVTALEILAKFSPSD---------------------------SPNQNYIVESMRRFK- 451
VG +L + P+ +I + M+ K
Sbjct: 228 VGREMVTRLLNCYDNETILQRIRSWRNTAHRLTELEVKVDDKNVCPDCGHIGKLMQHRKA 287
Query: 452 --------------NWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQK 497
W ++ L K + +K + DFP+ +IE ++
Sbjct: 288 GCLDCHRSIGCDESRWKQQRANVKAELEIKRKALK-DPDFPHEPIIEEFMTRPCELPALD 346
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
L W P+L R ++ W++ Q L+P+ +
Sbjct: 347 LQWKQPNLVKFIRSMSSYLQWNELYCFQKLLPLFTR 382
>gi|410974093|ref|XP_003993482.1| PREDICTED: flap endonuclease 1 [Felis catus]
Length = 380
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 19/212 (8%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I E +RR +K + P+ L ++ + + L + + +E + K
Sbjct: 253 -HKSIEEIVRRLDP--SKYSVPENWLHKEAQQLFLEPEVLDPESVELKWSEPNEEELVKF 309
Query: 499 AWGTPDL------DGLRRFAANKFGWSQNRVD 524
G G+RR + ++ G +Q R+D
Sbjct: 310 MCGEKQFSEERIRSGVRRLSKSRQGSTQGRLD 341
>gi|452845529|gb|EME47462.1| hypothetical protein DOTSEDRAFT_166539 [Dothistroma septosporum
NZE10]
Length = 811
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 15/178 (8%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF--FDKK- 380
+ ++ VP+ APGEAEA+CA LE V +DD D ++FG +T+ K K+
Sbjct: 185 HRMFEVLKVPYHRAPGEAEAECARLEKAGIVDAVWSDDGDSFMFGCQTLIKQHKVGGKRI 244
Query: 381 -SHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALEILAKFSPSDSP 438
HV Y A I + + A+L G DY GL G GP TA + + S
Sbjct: 245 SDHVRIYRAETIARENDFDANSFVLFAVLAGGDYDKAGLPGCGPQTAKWVARR---SKGL 301
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496
+ + S R W ++ L +R + + FPN ++ Y +P++ T Q
Sbjct: 302 AKALVEASDRDLPAWRSQ-------LANAIRKLDVPPTFPNTRALKNYWQPNVTTEEQ 352
>gi|348500556|ref|XP_003437839.1| PREDICTED: probable flap endonuclease 1 homolog [Oreochromis
niloticus]
Length = 348
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 317 SRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 376
S + E +LL+ GVP I APG+AEA CA L V ++D D FGA + +
Sbjct: 104 SSQTKECLQLLKCLGVPVIQAPGDAEALCAQLVREGTVHAVASEDMDTLPFGANILIRQL 163
Query: 377 FDKK-SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
KK S V+ Y+ P + ++ ++ + L +L+G DY + G+GP AL ++ K
Sbjct: 164 NAKKDSEVIEYSLPKLLEKLQIGHKEFVDLCILLGCDYCEKIPGLGPKRALTLIQK 219
>gi|392563460|gb|EIW56639.1| hypothetical protein TRAVEDRAFT_73115 [Trametes versicolor
FP-101664 SS1]
Length = 1027
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 32/197 (16%)
Query: 324 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN-------- 375
QE++ FG + +APGEAEA+ A L V++DD D +LFGA+ V +N
Sbjct: 109 QEIITAFGFEWRMAPGEAEAELAYLNRIGVIDAVLSDDVDTFLFGAKMVIRNKNATLSGN 168
Query: 376 ---------FFDKKSHVLRYTAPDI--RYYFELTREKLIQLALLVGSDYT-PGLQGVGPV 423
D +H + Y + DI R +LT+ LI + +L G DY GL+G GP
Sbjct: 169 KGQDMKNSAGKDDGNHAMVYRSSDILNREDIQLTQGGLILIGVLRGGDYCQEGLEGCGPA 228
Query: 424 TALEILAKFSPSDS---PNQNYIVESMRRF-KNWLAK-----KNKPDTHLTRKLRNV--K 472
A LAK D+ + E + F W + + HL RK +
Sbjct: 229 LA-HGLAKCGFGDTLLATARTKTREELEEFLDGWRDEIRAELRTNARGHLPRKSPKLSRS 287
Query: 473 LNDDFPNVSVIEAYLKP 489
+ DDFPNV V+ AY P
Sbjct: 288 IPDDFPNVDVVLAYTNP 304
>gi|296824092|ref|XP_002850547.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238838101|gb|EEQ27763.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 782
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 107/246 (43%), Gaps = 38/246 (15%)
Query: 309 DKKRRPYVSRKMLEAQ-----ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
D KR +S+ AQ +L++LF P APGEAEA+CA L+ V+++D D
Sbjct: 93 DYKRGRLISKNAAGAQIELSRKLIELFSYPCHTAPGEAEAECAKLQRTGVVDAVMSNDVD 152
Query: 364 IWLFGARTVYKNF-------FDKKSHVLRYT--APDIRYYFELTREKLIQLALLVGSDYT 414
+FG++ N+ +HV Y A D L ++ +ALL G DY+
Sbjct: 153 ALMFGSKVTLLNYSKGSAKQSGAATHVDLYDTEAEDGDSKVTLDTGGMVLVALLSGGDYS 212
Query: 415 P-GLQGVGPVTALEIL-AKFSP----------SDSPNQ---NYIVESMRRFKNWLAKKNK 459
P G+ GP A EI A F S PN+ + E R + L +
Sbjct: 213 PAGVPLCGPKLAAEIARAGFGEDLLGIMQGLLSGRPNKEATEALCEWRERLQYELETNHS 272
Query: 460 PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDL-------DGLRRFA 512
+ K + V++ D+FP+++V+ + P +T + + PD+ D LR F
Sbjct: 273 --GYFKTKHKAVRIPDEFPDMAVLRNCVDPVTSTPKELDMFRKPDIWGRRINVDKLRAFV 330
Query: 513 ANKFGW 518
GW
Sbjct: 331 GKHLGW 336
>gi|378756502|gb|EHY66526.1| hypothetical protein NERG_00166 [Nematocida sp. 1 ERTm2]
Length = 500
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 17/213 (7%)
Query: 307 GTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
DK+ P R +++ +L F + + +AP E++ S+E GV+T+DSDI +
Sbjct: 267 AIDKETLPLAYRVIVD---ILDAFSIKYAIAPSESDNVYKSIERAIDMDGVVTEDSDILI 323
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
F + V+++ F +K + + E T+ +L LA L+G+DY PG+ G+GP A
Sbjct: 324 FSKKPVFRHVFKRKILPKVFAEEGV---LEYTQTELHILAWLLGNDYVPGISGIGPSRAR 380
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPN-VSVIEA 485
I+ K+ + SP QN +S+ + L + + R N + + PN + V +
Sbjct: 381 IIIGKYREAVSP-QNVEEDSIN--IDQLCE-------IVRSTVNRDITLEIPNLLQVQKV 430
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW 518
Y + ++ LA D + F A + W
Sbjct: 431 YADREFKVHIANLAPKPLDKRKIVEFLAKRTSW 463
>gi|209879882|ref|XP_002141381.1| Flap endonuclease 1 [Cryptosporidium muris RN66]
gi|317374886|sp|B6AFP1.1|FEN1_CRYMR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|209556987|gb|EEA07032.1| Flap endonuclease 1, putative [Cryptosporidium muris RN66]
Length = 472
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 32/218 (14%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK--NFFDKKSHV 383
+L+L G+P I A EAEAQCA L GV T+D+D FG V + NF D K
Sbjct: 146 MLKLLGIPVIEATSEAEAQCAELCKEGLVYGVATEDADSLTFGTPLVIRHLNFSDGKFSD 205
Query: 384 LRYTAPD---------IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
+ + + + L+ ++ + L +L G DY ++G+G +TA ++L K
Sbjct: 206 SKGNSKNSLQVIKLSTVLSDLGLSMQQFVDLCILCGCDYCGTIRGIGALTAYKLLKKH-- 263
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ + N L K P L +K+ + F N +VI+A D
Sbjct: 264 ----------KDIETIINELDKNKHP---LPMSFDYIKVRELFTNPNVIKAKEFRD---- 306
Query: 495 VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
KL W P+L+GL + + +S+ RV I K
Sbjct: 307 --KLKWTNPNLEGLSEWLIKQQNFSEVRVANYCTRIKK 342
>gi|57099749|ref|XP_533271.1| PREDICTED: flap endonuclease 1 isoform 1 [Canis lupus familiaris]
Length = 380
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL L G+P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + I L +E+ + L +L+GSDY ++G+GP A++++ K
Sbjct: 200 KKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQK------- 252
Query: 439 NQNYIVESMRRF--------KNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD 490
I E +RR +NWL K+ + + +L+P+
Sbjct: 253 -HKSIEEIVRRLDPNKYPVPENWLHKEAQ------------------------QLFLEPE 287
Query: 491 I-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + +L W P+ + L +F + +S+ R+
Sbjct: 288 VLDPESVELKWSEPNEEELVKFMCGEKQFSEERI 321
>gi|302677424|ref|XP_003028395.1| hypothetical protein SCHCODRAFT_83281 [Schizophyllum commune H4-8]
gi|300102083|gb|EFI93492.1| hypothetical protein SCHCODRAFT_83281 [Schizophyllum commune H4-8]
Length = 911
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 39/230 (16%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN---------- 375
+++ FG + +APGEAEA+ A L GV++DDSD +LFGA TV +N
Sbjct: 111 IVEAFGYEWRMAPGEAEAELAYLNRIGIIDGVLSDDSDNFLFGALTVIRNPSNNLSANRA 170
Query: 376 -------FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDY-TPGLQGVGPVTALE 427
D K H + Y DI ELTR LI + L+ G DY GL G +
Sbjct: 171 KPVLNSEGRDDKQHTMVYRLADITSQLELTRGGLILIGLMAGGDYEQAGLPDCG-IKVAT 229
Query: 428 ILAK-------FSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLND----D 476
LA+ + +++ + + + + + ++N L + + + + KL D
Sbjct: 230 GLARCGFGDTLYDAANTLDDDALEDFLENWRNELRHELRTNAQGKLPSKRKKLADALPES 289
Query: 477 FPNVSVIEAYLKPDINT-------NVQKLAWGT-PDLDGLRRFAANKFGW 518
FP++ V+ +Y P I T N K+ WG P++ L R F W
Sbjct: 290 FPSIKVLRSYTCP-ITTESMGREENNLKITWGKDPNMAALARTCEMHFEW 338
>gi|288559640|ref|YP_003423126.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
gi|288542350|gb|ADC46234.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
Length = 328
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 35/212 (16%)
Query: 314 PYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVY 373
PY+ + +++LL+ G+P++ A GE EAQ A + V + D D LFGA +
Sbjct: 129 PYI---IESSKKLLEYMGIPYVQAKGEGEAQGAYMVKNGDAWAVASQDYDCLLFGAPRII 185
Query: 374 KNF-FDKKSHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
+N L Y D + +L+RE+L+ +AL+VG+D+ G+ G+G T L+++ +
Sbjct: 186 RNLTLSGGLSNLEYLELDKVLTEIDLSREQLVDVALMVGTDFNEGIYGIGAKTGLKLIRQ 245
Query: 432 FSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
S D Q I + + +PD +LR E +L D+
Sbjct: 246 NSLEDILVQKGITDV----------EVEPD-----ELR--------------EIFLSHDV 276
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
NT+ K+ + + D + L F + G+S+ RV
Sbjct: 277 NTDY-KIKFKSADKEKLCEFMCEEHGFSETRV 307
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,225,646,621
Number of Sequences: 23463169
Number of extensions: 348150615
Number of successful extensions: 1115464
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1767
Number of HSP's successfully gapped in prelim test: 1314
Number of HSP's that attempted gapping in prelim test: 1106169
Number of HSP's gapped (non-prelim): 7509
length of query: 538
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 390
effective length of database: 8,886,646,355
effective search space: 3465792078450
effective search space used: 3465792078450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)