BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14291
(538 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus laevis
GN=ercc5 PE=2 SV=1
Length = 1196
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 147/224 (65%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELLQLFG+P+IVAP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF +
Sbjct: 802 CLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSQ 861
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
HV Y DI L R KLI LA L+GSDYT G+ VG V+A+EIL +F P
Sbjct: 862 NKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEILNEF-----PG 916
Query: 440 QNYIVESMRRFKNWLA-----KKNKP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
Q +E + +FK W + KK +P DT + +KLR + L FPN +V AYLKP +
Sbjct: 917 QG--LEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLDLQQSFPNPAVASAYLKPVV 974
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + +WG PDL+ +R F ++FGW + + D+ L+P++K+++
Sbjct: 975 DESKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLPVLKQLN 1018
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+P+ TLE K+LAV I + DR+
Sbjct: 1 MGVQGLWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQ 46
>sp|P28715|ERCC5_HUMAN DNA repair protein complementing XP-G cells OS=Homo sapiens
GN=ERCC5 PE=1 SV=3
Length = 1186
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VY+NFF+K
Sbjct: 769 FLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNK 828
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F
Sbjct: 829 NKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFP------ 882
Query: 440 QNYIVESMRRFKNWL--AKKN---KPDTHLT---RKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ +E + +F W A+KN +P+ H T +KLR ++L FPN +V EAYLKP +
Sbjct: 883 -GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVV 941
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ + WG PDLD +R F FGW++ + D++L P++K++
Sbjct: 942 DDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQL 984
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRR 155
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRH 46
>sp|P35689|ERCC5_MOUSE DNA repair protein complementing XP-G cells homolog OS=Mus musculus
GN=Ercc5 PE=1 SV=4
Length = 1170
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 141/224 (62%), Gaps = 15/224 (6%)
Query: 320 MLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 379
LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 768 FLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNK 827
Query: 380 KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN 439
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PG 882
Query: 440 QNYIVESMRRFKNWL--AKKNKP------DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI 491
+ ++ + +F W A+ NK DT + +KLR ++L FPN +V +AYL+P +
Sbjct: 883 RG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYLRPVV 940
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ + WG PD+D + F FGW++ + D++L P++K ++
Sbjct: 941 DDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYPVLKHLN 984
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLWKLLE SG V E LE KVLAV I
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDI 31
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 33 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMALPPP--SVSREVDMFELPP 90
A+R+ K A+ ++ K LLK L++Q L + PP V R+ D++ LPP
Sbjct: 89 AKRRQRKDSASIDSRKTTEKLLKTFLKRQALKTAFRSSRHEAPPSLTQVQRQDDIYVLPP 148
Query: 91 AP 92
P
Sbjct: 149 LP 150
>sp|P07276|RAD2_YEAST DNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD2 PE=1 SV=2
Length = 1031
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 25/240 (10%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAK----------KNKPDTHLTRKLRN--VKLND 475
++A+F +++ FK+W +NK + L +KL N + L+D
Sbjct: 880 VIAEFG------------NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDD 927
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
DFP+V V +AY++P+++ + WG PDLD LR F + GW + D+ LIP+++ ++
Sbjct: 928 DFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVN 987
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
Length = 1479
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 150/256 (58%), Gaps = 34/256 (13%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E N G++TDDSD++LFGAR+VYK
Sbjct: 921 VSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYK 980
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD + +V Y DI L+R+K+I++A+L+GSDYT G+ G+G V A+E++ F
Sbjct: 981 NIFDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPE 1040
Query: 435 SD----------SPNQNYIVESMRRFKNWLAKK------NK-----PDTHLTRKLRNVKL 473
D SP+ + ++ + + + K+ NK T T +++ + +
Sbjct: 1041 EDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGIISGASTDDTEEIKQIFM 1100
Query: 474 NDD------------FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQN 521
+ FP+ +VI AYL P ++ + +K +WG PDL LR+ KF W+
Sbjct: 1101 DQHRKVSKNWHIPLTFPSEAVISAYLNPQVDLSTEKFSWGKPDLSVLRKLCWEKFNWNGK 1160
Query: 522 RVDQTLIPIMKKISQR 537
+ D+ L+P++K+ +R
Sbjct: 1161 KTDELLLPVLKEYEKR 1176
Score = 39.3 bits (90), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW+LL G+ V VETL NK LA+
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAI 29
>sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad13 PE=2 SV=2
Length = 1112
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 144/242 (59%), Gaps = 21/242 (8%)
Query: 308 TDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWL 366
++K+ V++ M+ E QELL+LFG+P+IVAP EAEAQC+ L G++TDDSD++L
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFL 803
Query: 367 FGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
FG VY+N F++ V Y D++ F + + LI+LA L+GSDYT GL VGPV AL
Sbjct: 804 FGGTRVYRNMFNQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLAL 863
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWL-------AKKNKPDTHLTRKLR----NVKLND 475
EIL +F P D+ + FK W A KN +T + +++ + L
Sbjct: 864 EILHEF-PGDT--------GLFEFKKWFQRLSTGHASKNDVNTPVKKRINKLVGKIILPS 914
Query: 476 DFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+FPN V EAYL P ++ + Q WG PDLD LR+F GWS+ R ++ L+P+++ +
Sbjct: 915 EFPNPLVDEAYLHPAVDDSKQSFQWGIPDLDELRQFLMATVGWSKQRTNEVLLPVIQDMH 974
Query: 536 QR 537
++
Sbjct: 975 KK 976
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV+GLW +LE +PV +ETL NK LA+
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAI 29
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica
GN=SEND1 PE=2 SV=1
Length = 641
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 114/238 (47%), Gaps = 37/238 (15%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN-FFDKK 380
EA+ L G+P + EAEAQCASL+L + G T DSD +LFGARTVY++ F +
Sbjct: 126 EAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDVFIGEG 185
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI R LI LA+L+GSDY+ G+ G GP TA ++ S
Sbjct: 186 GYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVK------SVGD 239
Query: 441 NYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVS----------------VIE 484
N I++ + L+ K K K++D P S VI
Sbjct: 240 NLILDQI------LSNGVKATRKCKGKNSGNKVDDMCPKASSCEVGMTQDSDGQFRDVIN 293
Query: 485 AYLKPDINT----NVQKLAWGTPDL-DGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
AYL+P ++ VQ++ P L L++ F WS + DQ ++P KI++R
Sbjct: 294 AYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILP---KIAER 348
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2
Length = 908
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2
Length = 908
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWL 454
AL++L F Q+ ++RF W+
Sbjct: 222 ALKLLQIFK-----GQSL----LQRFNQWI 242
>sp|A0CYG2|FEN12_PARTE Flap endonuclease 1-2 OS=Paramecium tetraurelia GN=FEN1-2 PE=3 SV=1
Length = 390
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 33/234 (14%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R +S M E A ++LQL G P I+AP EAEAQCA L T+D D F
Sbjct: 132 QRTTTISSIMKEDAIKMLQLMGCPVIIAPCEAEAQCAELCRAGKIYATATEDMDALTFRT 191
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ + F KK + D+ ELT E+ + L +L G DYT ++G+GP TA +++
Sbjct: 192 PVLLRGFNTKKEPIYEIIYDDMIKELELTYEQFVDLCILCGCDYTEKIEGIGPGTAYKLI 251
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
++ + I+E +++ A++ K N+ P +V +L
Sbjct: 252 KEYKSIEG-----ILEHVQKVN---AEREK--------------NNQNPKYTVPSKFLYQ 289
Query: 490 D-----INTNVQK-----LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
D I VQK L W PD+D L++F + G++++R+D L I KK
Sbjct: 290 DSRELFITPLVQKGDELQLTWNKPDVDNLKKFLIEEKGFAESRIDNGLKRIAKK 343
>sp|A0CXT3|FEN11_PARTE Flap endonuclease 1-1 OS=Paramecium tetraurelia GN=FEN1-1 PE=3 SV=1
Length = 390
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R +S M E A ++L+L G P I+AP EAEAQCA L T+D D F
Sbjct: 132 QRTTTISSVMKEDAIKMLKLMGCPVIIAPCEAEAQCAELCRAGKIYATATEDMDALTFRT 191
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ + F KK + D+ E+T E+ + L +L G DYT ++G+GP TA +++
Sbjct: 192 PVLLRGFNTKKEPIYEIIYDDMMKELEITYEQFVDLCILCGCDYTEKIEGIGPGTAYKLI 251
Query: 430 AKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489
+F + I+E +++ N +KNK + T + F E ++ P
Sbjct: 252 KEFKSIEG-----ILEHVQKV-NAEREKNKQNPKYT-------VPTKFLYQDSRELFITP 298
Query: 490 DINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
+ + +L W PD++ L++F + G++++R+D L I KK
Sbjct: 299 LVQKGEEIQLTWNKPDVENLKKFLVEEKGFAESRIDNGLKRIAKK 343
>sp|B8AW67|FEN11_ORYSI Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3
SV=1
Length = 380
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA ++ D
Sbjct: 141 ECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + ELT ++ I L +L G DY ++G+G TAL+++ + +S
Sbjct: 201 KKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIES- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + ++ +D+P + +P++ ++ +L
Sbjct: 260 ----ILENINKDR-------------------YQIPEDWPYQEARRLFKEPNVTLDIPEL 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL +F + G++Q+RV + +
Sbjct: 297 KWNAPDEEGLVQFLVKENGFNQDRVTKAI 325
>sp|Q9SXQ6|FEN11_ORYSJ Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a
PE=2 SV=1
Length = 380
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA ++ D
Sbjct: 141 ECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + ELT ++ I L +L G DY ++G+G TAL+++ + +S
Sbjct: 201 KKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIES- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + ++ +D+P + +P++ ++ +L
Sbjct: 260 ----ILENINKDR-------------------YQIPEDWPYQEARRLFKEPNVTLDIPEL 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL F + G++Q+RV + +
Sbjct: 297 KWNAPDEEGLVEFLVKENGFNQDRVTKAI 325
>sp|A4VDN2|FEN1_TETTS Flap endonuclease 1 OS=Tetrahymena thermophila (strain SB210)
GN=FEN1 PE=3 SV=1
Length = 384
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 24/235 (10%)
Query: 297 AEAQCASLELG------TDKKRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLE 349
AE Q ++E G ++R +++++M +A +LLQL GVP I+AP EAEAQCA+L
Sbjct: 112 AEKQKTAIETGDMQEALKQEQRNLHITKEMKADAIKLLQLVGVPVILAPCEAEAQCAALA 171
Query: 350 LGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLV 409
+T+D D F + +N KK + + +L+ + + L +L
Sbjct: 172 KAKKVFATVTEDMDALTFATPFLLRNLNSKKEPITEINYEKMLQELKLSHNEFVDLCILC 231
Query: 410 GSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLR 469
G DY ++GVGPV A +++ ++ + ++E M KK K
Sbjct: 232 GCDYLGRIEGVGPVNAFKLI-----TEHKSLEKVLEHMEEVNKQSTKKQK---------- 276
Query: 470 NVKLNDDFPNVSVIEAYLKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+ + VS + ++ P++ + +L W PD++ L++F + G+S+ RV
Sbjct: 277 -YTVPSSYDYVSARDLFINPEVTDPETIQLEWKKPDVEELKKFLVEEKGFSEQRV 330
>sp|Q6BLF4|FEN1_DEBHA Flap endonuclease 1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=FEN1 PE=3
SV=2
Length = 379
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL+L GVP++ AP EAEAQCA L G ++D D + + ++ S
Sbjct: 141 EAKKLLELMGVPYVNAPCEAEAQCAELARGGKVFAAASEDMDTICYQPPFLLRHL--TFS 198
Query: 382 HVLRYTAPDIRY-----YFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+ I+Y E+ RE I L +L+G DY ++GVGPVTA +++ + D
Sbjct: 199 EARKMPIDQIQYEKVLEALEMDRETFIDLCILLGCDYCETIRGVGPVTAFKLIKEHGSLD 258
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNV 495
IVE + N PD N K+ +D+P + ++ PD I+ +
Sbjct: 259 K-----IVEYL---------TNNPDKT------NFKVPEDWPYDEARKLFINPDTIDASE 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD++GL ++ + G+S++R+
Sbjct: 299 VNLKWKEPDVEGLIQYMVKEKGFSEDRI 326
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LL+L GVP++ AP EAEAQCA L G
Sbjct: 134 VTREQNDEAKKLLELMGVPYVNAPCEAEAQCAELARG 170
>sp|B4FHY0|FEN1_MAIZE Flap endonuclease 1 OS=Zea mays GN=FEN1 PE=2 SV=1
Length = 379
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+R+ E + LL+L GVP + AP EAEA+CA+L + + V ++D D FGA
Sbjct: 129 KRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASEDMDSLTFGA 188
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
++ D KK V+ + + ELT ++ I L +L G DY ++G+G TAL
Sbjct: 189 PRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTAL 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + +S I+E++ + + ++ +D+P +
Sbjct: 249 KLIRQHGSIES-----ILENLNKDR-------------------YQIPEDWPYQEARRLF 284
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P++ ++ +L W PD +GL F G++++RV + +
Sbjct: 285 KEPNVTLDIPELKWTAPDEEGLISFLVKDNGFNEDRVTKAI 325
>sp|Q6L2I9|FEN_PICTO Flap endonuclease 1 OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=fen PE=3 SV=1
Length = 338
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 45/245 (18%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EA A ++ + R Y++ ++ E++ LL L G+P++ AP E EAQ + + L
Sbjct: 107 EAIASNDDAKIRSLSSRINYITDDIVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDV 166
Query: 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFE------------LTREKL 402
V++ D D LFGA+ + +NF + T+ I E ++RE+L
Sbjct: 167 NAVVSQDYDCLLFGAKRILRNFTVYGRRRIAGTSRTINVNPEIIDLNENLSNLGISREQL 226
Query: 403 IQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDT 462
I + +L G+D+ PG++G+G TAL ++ K++ D
Sbjct: 227 IYIGILTGTDFNPGVKGIGAKTALSLIKKYN---------------------------DI 259
Query: 463 HLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
+ K++N+ + D+ +IE ++ P N ++ + PD DG+ F K +S++R
Sbjct: 260 YSVIKIKNIGI-DNLD--EIIEFFMNPPHND--YEIKFNEPDFDGIIDFLCGKHNFSESR 314
Query: 523 VDQTL 527
V++TL
Sbjct: 315 VNETL 319
>sp|C5WU23|FEN12_SORBI Flap endonuclease 1-B OS=Sorghum bicolor GN=FEN1-B PE=3 SV=2
Length = 428
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+RK + + LL+L GVP + APGEAEAQCA+L + V ++D D FGA
Sbjct: 156 KRTVKVTRKHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDSLTFGA 215
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R ++ D KKS V + + LT ++ I L +L G DY ++G+G AL
Sbjct: 216 RRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRAL 275
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + + QN + RF + +D+P V +
Sbjct: 276 KLIRQHGCIEEVLQNL---NQTRF---------------------SVPEDWPYQEVRTLF 311
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P+++ + W +PD +GL F + + +S +RV + +
Sbjct: 312 KEPNVSAGISDFTWTSPDTEGLMGFLSTENSFSPDRVTKAV 352
>sp|C5YUK3|FEN11_SORBI Flap endonuclease 1-A OS=Sorghum bicolor GN=FEN1-A PE=3 SV=1
Length = 380
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 27/209 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + AP EAEA+CA+L + V ++D D FGA ++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAECAALCKNDKVFAVASEDMDSLTFGAPRFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + + ELT ++ I L +L G DY ++G+G TAL+++ + +S
Sbjct: 201 KKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIES- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + + ++ +D+P + +P++ +V +L
Sbjct: 260 ----ILENLNKDR-------------------YQIPEDWPYQEARRLFKEPNVTLDVPEL 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W PD +GL F G++++RV + +
Sbjct: 297 KWTPPDEEGLISFLVKDNGFNEDRVTKAI 325
>sp|Q178M1|FEN1_AEDAE Flap endonuclease 1 OS=Aedes aegypti GN=Fen1 PE=3 SV=1
Length = 380
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 28/218 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ELL+L GVP++ AP EAEAQCA+L G T+D D FG+ + ++
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATATEDMDALTFGSNILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V + I ELTR++ I L +L+G DY ++G+GP A+E++ K +
Sbjct: 200 RKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDYCDSIRGIGPKKAVELINKHRTIEKI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N + +NW ++ V+ + +P++ N +
Sbjct: 260 LENLDTKKYVVPENW----------------------NYQQARVL--FKEPEVANPEEVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
L WG PD +GL ++ ++++R+ I+K S
Sbjct: 296 LKWGEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKS 333
>sp|C6TEX6|FEN1_SOYBN Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1
Length = 382
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
+ + LL+L GVP + AP EAEAQCA+L GV+++D D FGA ++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYGVVSEDMDSLTFGAPKFLRHLMDPSS 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK V+ + I +T ++ I L +L G DY ++G+G +TAL+++ + ++
Sbjct: 201 KKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENI 260
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
+N E + NW P + +P + T+ ++L
Sbjct: 261 PENLNKERYQIPDNW------------------------PYQEARRLFKEPLVITDEKEL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W +PD +GL F N+ G++++RV + +
Sbjct: 297 DIKWSSPDEEGLITFLVNENGFNRDRVTKAI 327
>sp|A5UL52|FEN_METS3 Flap endonuclease 1 OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=fen PE=3 SV=1
Length = 327
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 48/224 (21%)
Query: 311 KRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 370
K PY+ + +++LL + G+P+I A GE EAQ A L V + D D LFGA+
Sbjct: 126 KLSPYI---IESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAK 182
Query: 371 TVYKNFFDKKSHVLRYTAPDIRYY--------FELTREKLIQLALLVGSDYTPGLQGVGP 422
V +N + D+ YY ++ RE+LI + +L+G+D++ GL+GVG
Sbjct: 183 RVVRNL------AINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGA 236
Query: 423 VTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSV 482
TAL++ K +N LAK + +H ++R
Sbjct: 237 KTALKLAKK----------------GELENKLAKLQEESSHDISEVR------------- 267
Query: 483 IEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQT 526
E +L ++NTN K+ W P + + F + G+SQ+RV +
Sbjct: 268 -EIFLNHNVNTNY-KIRWKKPAKNDIIDFLCEEHGFSQDRVSKA 309
>sp|A5E121|FEN1_LODEL Flap endonuclease 1 OS=Lodderomyces elongisporus (strain ATCC 11503
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=FEN1 PE=3 SV=1
Length = 384
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P++ AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLELMGIPYVNAPCEAEAQCAELARGGKVFAAASEDMDTLCYEPPQLLRHLTFAEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + T + ++T+E+ I L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 201 RKMPIDQITYKEAIQGLDMTKEQFIDLCILLGCDYCETIKGVGPVTAYKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
IV+ ++ PD K+ +++P + ++KP++ ++ +
Sbjct: 260 ----IVKYLQ---------ENPDK------TKYKVPENWPYNEARQLFMKPEVLPALEVE 300
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PDLDGL + G+S++R+
Sbjct: 301 LKWKEPDLDGLIEYMVKNKGFSEDRI 326
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 264 QTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
Q RL +Q + EA++LL+L G+P++ AP EAEAQCA L G
Sbjct: 128 QKRLVRVSRDQ-NDEAKKLLELMGIPYVNAPCEAEAQCAELARG 170
>sp|B4J6M4|FEN1_DROGR Flap endonuclease 1 OS=Drosophila grimshawi GN=Fen1 PE=3 SV=1
Length = 388
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + ELT ++ I L +L+G DY ++GVGP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIRGVGPKRAIELIKSYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N +NW K+ + E +++PD+ + +
Sbjct: 260 LENIDTNKYAVPENWNYKRAR------------------------ELFIEPDVTDASTID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD DGL +F +++ RV
Sbjct: 296 LKWTDPDEDGLVQFLCGDRQFNEERV 321
>sp|D3TQJ5|FEN1_GLOMM Flap endonuclease 1 OS=Glossina morsitans morsitans GN=Fen1 PE=2
SV=1
Length = 382
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 26/220 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + ++
Sbjct: 140 EAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSGILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + F LT ++ I L +L+G DY G++G+GP A E++ + ++
Sbjct: 200 RKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIRGIGPKRATELMNSYKDIET- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E + R K + P+ + R + +N + + S +E L
Sbjct: 259 ----ILEKIDRKKYTV-----PEDWNYQIARELFVNPEVADPSSLE-------------L 296
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
W PD DGL RF ++++RV I+K S ++
Sbjct: 297 KWFDPDEDGLVRFFCGDRQFNEDRVRSGAKKILKCKSSQT 336
>sp|Q2FNC9|FEN_METHJ Flap endonuclease 1 OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=fen PE=3 SV=1
Length = 333
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 43/226 (19%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
A++L+QL G+P + AP E EAQ A + L V++ D D LFG + +N
Sbjct: 136 ARQLIQLMGLPVVDAPSEGEAQGAYMVLKGDADYVVSQDYDTLLFGTPVLVRNLTISGKR 195
Query: 383 VL----------RYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
L R D+ ++TRE+LI++A+L G+D+ PG++G+G T L+ +
Sbjct: 196 RLHGRQITVQPERIVLSDVLSTLDITREQLIEIAILTGTDFNPGIRGIGAKTGLKKI--- 252
Query: 433 SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
K + D+ + KL DF V +L P +
Sbjct: 253 -----------------------KSGEFDSIIREKL------PDFDPEPVRSFFLNPPV- 282
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
T+ L G D DG+R F + G+SQ+RVD L I KK Q++
Sbjct: 283 TDSYTLDPGRIDRDGIRAFLCGEHGFSQDRVDPVLDKISKKEKQKT 328
>sp|D3BN56|FEN1_POLPA Flap endonuclease 1 OS=Polysphondylium pallidum GN=repG PE=3 SV=1
Length = 388
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 310 KKRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
+KR SRK E ++LL+L GVP + AP EAEAQCA L G ++D D G
Sbjct: 128 QKRTISASRKQNEECKKLLELMGVPIVQAPCEAEAQCAELCKGGKAWATGSEDMDSLTLG 187
Query: 369 ARTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ + +K ++ + +LT ++ + L +L+G DY ++G+GP +
Sbjct: 188 TTILLRRLTFSEARKLPIMEIELEKVLDGLDLTHDQFVDLCILLGCDYCDTIKGIGPKKS 247
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
+++ K N +++++ R KN + + FP V E
Sbjct: 248 FDMITKHK-----NIQTVIQNIDRTKNPIP-------------------ESFPYEEVREL 283
Query: 486 YLKPDI--NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+ PD+ ++ ++ W PD+DGL ++ + G+++ RV Q +
Sbjct: 284 FKNPDVIKCQDLPEIVWKEPDVDGLIKYLVGEMGFNETRVQQGI 327
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 264 QTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
Q R S +Q + E ++LL+L GVP + AP EAEAQCA L G
Sbjct: 128 QKRTISASRKQ-NEECKKLLELMGVPIVQAPCEAEAQCAELCKG 170
>sp|Q75LI2|FEN12_ORYSJ Flap endonuclease 1-B OS=Oryza sativa subsp. japonica GN=FEN-1b
PE=2 SV=1
Length = 412
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V++K E + LL L GVP + APGEAEAQCA+L + + ++D D FGA
Sbjct: 129 KRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGA 188
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R ++ D K+S V + + LT ++ I L +L G DY ++G+G AL
Sbjct: 189 RRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRAL 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + YI E ++ TR + +D+P V +
Sbjct: 249 KLIRQ--------HGYIEEVVQNLSQ------------TR----YSVPEDWPYQEVRALF 284
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P++ T++ W PD +GL F A + +S +RV +++
Sbjct: 285 KEPNVCTDIPDFLWTPPDEEGLINFLAAENNFSPDRVVKSV 325
>sp|B8AMS4|FEN12_ORYSI Flap endonuclease 1-B OS=Oryza sativa subsp. indica GN=FEN1b PE=3
SV=1
Length = 412
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V++K E + LL L GVP + APGEAEAQCA+L + + ++D D FGA
Sbjct: 129 KRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGA 188
Query: 370 RTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
R ++ D K+S V + + LT ++ I L +L G DY ++G+G AL
Sbjct: 189 RRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRAL 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + YI E ++ TR + +D+P V +
Sbjct: 249 KLIRQ--------HGYIEEVVQNLSQ------------TR----YSVPEDWPYQEVRALF 284
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P++ T++ W PD +GL F A + +S +RV +++
Sbjct: 285 KEPNVCTDIPDFLWTPPDEEGLINFLAAENNFSPDRVVKSV 325
>sp|B4LM90|FEN1_DROVI Flap endonuclease 1 OS=Drosophila virilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + ELT ++ I L +L+G DY ++GVGP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIKGVGPKRAIELIKSYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N +NW K+ + E +++PD+ + +
Sbjct: 260 LENIDTSKYPVPENWNYKRAR------------------------ELFIEPDVADASAID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD DGL +F +++ RV
Sbjct: 296 LKWTEPDEDGLVQFLCGDRQFNEERV 321
>sp|A7TJ59|FEN1_VANPO Flap endonuclease 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028
/ DSM 70294) GN=FEN1 PE=3 SV=1
Length = 377
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P+I AP EAE+QCA L ++D D + + ++
Sbjct: 138 EAKQLLELMGIPYITAPCEAESQCAELAKCGKVYAAASEDMDTLCYRTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +LT E+ + L +++G DY ++GVGPVTAL+++ ++ +
Sbjct: 198 KKEPIHEIDTELVLKGLDLTLEQFVDLGIMLGCDYCDSIKGVGPVTALKLIKEYGSLEKI 257
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+ +ES W K+ +D+P E +LKPD IN N +
Sbjct: 258 IE--YIESDSSNSKW------------------KIPNDWPYKDARELFLKPDVINGNEVE 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P+ GL F + +S+ RV
Sbjct: 298 LKWQPPNEKGLIDFLCGEKKFSEERV 323
>sp|Q6C116|FEN1_YARLI Flap endonuclease 1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=FEN1 PE=3 SV=1
Length = 389
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL L G+P + AP EAEAQCA L ++D D FG+ + ++
Sbjct: 152 EAKKLLTLMGIPIVEAPCEAEAQCAKLAEAGKVYAAASEDMDTLCFGSPVLLRHLTFSEA 211
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + I E+T + I L +L+G DY ++GVGP TAL+++ + +
Sbjct: 212 KKMPISEINFAKILEGLEMTHAQFIDLCILLGCDYADTIRGVGPQTALKLMKEHGSLEK- 270
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
IVE + KN K +K+ +++P V PD+ +++
Sbjct: 271 ----IVEHIE--KNPSGK--------------LKVPENWPYQEVRALLQAPDVLDSSSCD 310
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+ W PD++GL F G+S++RV +MK++
Sbjct: 311 IKWNNPDVEGLVDFLVRDKGFSEDRVRAGAARLMKQV 347
>sp|Q4P1V1|FEN1_USTMA Flap endonuclease 1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=FEN1 PE=3 SV=1
Length = 374
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 25/220 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E + LL+L G+P ++AP EAEAQCA L ++D D FG + K+ +
Sbjct: 141 EVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQ 200
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L D+ E +T + I L +L+G DY ++G+GP TAL+++ +
Sbjct: 201 KKLPVHQVDLAKALEGLQMTMAQFIDLCILLGCDYLDPIKGIGPKTALKLIREH------ 254
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
+++ + L + K ++V++ D +P + + PD+ V
Sbjct: 255 ------KTLENVVHHLKEDGK---------KSVQIPDHWPFQEARKIFESPDVQKGVDLD 299
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
L W PD++ + +F G+S++RV + + K +SQ+
Sbjct: 300 LKWEAPDVEAMVKFLCQDKGFSEDRVRKGCEKLQKSLSQK 339
>sp|B9WLQ5|FEN1_CANDC Flap endonuclease 1 OS=Candida dubliniensis (strain CD36 / ATCC
MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RAD27
PE=3 SV=1
Length = 372
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 26/206 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LL+L G+P + AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLELMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + D ++T+E+ I L +L+G DY ++G+G TA +++ + D+
Sbjct: 201 RKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
IVE W+ K NK T T L +++P + ++ P++ N N
Sbjct: 260 ----IVE-------WI-KNNK--TKYT-------LPENWPYDEARQLFMNPEVTNANEIS 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G+S++R+
Sbjct: 299 LKWKEPDVDGLIEFMVRQKGFSEDRI 324
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LL+L G+P + AP EAEAQCA L G
Sbjct: 134 VTREQNEEAKKLLELMGIPCVDAPCEAEAQCAELARG 170
>sp|A7IA59|FEN_METB6 Flap endonuclease 1 OS=Methanoregula boonei (strain 6A8) GN=fen
PE=3 SV=1
Length = 333
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 43/226 (19%)
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
++ELL L G+P++ AP E EAQ A + + ++ D D LFGA + +N
Sbjct: 136 SKELLDLLGIPYVQAPSEGEAQAAFMVQRGDARFAVSQDYDTLLFGAPLLMRNLTVSGKR 195
Query: 383 VLRYTA----------PDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
+R A ++ LTRE+L+++ +LVG+D+ PG GVG TAL+I+
Sbjct: 196 KIRGRAVTVNPERLVLSEVLSGLSLTREQLVEVGILVGTDFNPGAAGVGAKTALKIVKSG 255
Query: 433 SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
F LA+K F V + +LKP +
Sbjct: 256 G----------------FAQKLAEKCP----------------GFDPAPVADFFLKPPVT 283
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
T + LAWG P ++G+++ + + ++ RVD L K Q++
Sbjct: 284 TEYE-LAWGHPCVEGIKKMLCDGYDFAPERVDAALERYSAKAGQKT 328
>sp|Q0W6I0|FEN_UNCMA Flap endonuclease 1 OS=Uncultured methanogenic archaeon RC-I GN=fen
PE=3 SV=1
Length = 340
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 49/239 (20%)
Query: 316 VSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
++R++++ A+ LL G+PFIVAP E EAQ A + V + D D LFGA V +
Sbjct: 126 INRQIVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLLFGAPRVVR 185
Query: 375 N--------------FFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGV 420
N + D K V+ ++ LTRE+LI +A+LVG+DY PG+ V
Sbjct: 186 NIAITGKRKVPRKNIYMDVKPEVIELQ--EVLATLGLTREELIDMAILVGTDYNPGIFKV 243
Query: 421 GPVTALEILAKFSPSDSPNQNYIVESM-RRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPN 479
GP TAL+++ K N I++ + + +NW A K
Sbjct: 244 GPKTALKLVKK----HGDNMPAILDELGQTIENWEAIK---------------------- 277
Query: 480 VSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
E +L P + + Q + WG P+ ++ F + +S +RVD+ L + +S+ +
Sbjct: 278 ----EFFLHPTVTDDYQ-VKWGKPEPAKIKEFLCEEHSFSVDRVDKVLERLTTAVSETT 331
>sp|B2VTT3|FEN1_PYRTR Flap endonuclease 1 OS=Pyrenophora tritici-repentis (strain
Pt-1C-BFP) GN=fen1 PE=3 SV=2
Length = 395
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 27/208 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E Q LL+L G+P+IVAP EAEAQCA+L G ++D D F + ++
Sbjct: 140 ECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASEDMDTLTFDTPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K +L + ++ R++ I L +L+G DY ++G+GP TAL+++ + + +
Sbjct: 200 RKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDYLDPIKGIGPSTALKLIREHNDLEG- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NTNV 495
+VE ++ ++ + + + DD+P +L+PD+ +
Sbjct: 259 ----VVEHIK----------------SQSSKKLTIPDDWPFADARLLFLEPDVRPADDPE 298
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 299 CDFKWEAPDVEGLVKFLVEEKHFNEDRV 326
>sp|Q0UZR3|FEN1_PHANO Flap endonuclease 1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC
MYA-4574 / FGSC 10173) GN=FEN1 PE=3 SV=3
Length = 396
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+PFI+AP EAEAQCA+L G ++D D F + ++
Sbjct: 140 ECRRLLKLMGIPFIIAPTEAEAQCATLARGGKVYAAASEDMDTLTFNTPILLRHLTFSEQ 199
Query: 379 KKSHVLRYTAPDIRYYFELTREK--LIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+K +L + E+ RE+ I L +L+G DY ++G+GP TAL+++ D
Sbjct: 200 RKEPILEIHLDKVLEGLEMEREQPQFIDLCILLGCDYLDPIKGIGPSTALKLI-----RD 254
Query: 437 SPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI---NT 493
+V H+ + + L +D+P + +L+PD+ +
Sbjct: 255 HKTLEGVV-----------------AHIQSDQKKLTLPEDWPFADARQLFLEPDVCPADA 297
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL +F + ++++RV
Sbjct: 298 PECDFKWEAPDIEGLVKFLVEEKHFNEDRV 327
>sp|Q5A6K8|FEN1_CANAL Flap endonuclease 1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD27 PE=3 SV=1
Length = 372
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 26/206 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LLQL G+P + AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + D ++T+E+ I L +L+G DY ++G+G TA +++ + D+
Sbjct: 201 RKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
IVE W+ K NK T T L +++P + ++ P++ N +
Sbjct: 260 ----IVE-------WI-KNNK--TKYT-------LPENWPYDEARQLFMNPEVTNASEIN 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G+S++R+
Sbjct: 299 LKWKEPDVDGLIEFMVKQKGFSEDRI 324
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LLQL G+P + AP EAEAQCA L G
Sbjct: 134 VTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARG 170
>sp|A8XL25|FEN1_CAEBR Flap endonuclease 1 OS=Caenorhabditis briggsae GN=crn-1 PE=3 SV=1
Length = 382
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E ++LL L G+P + AP EAEAQCA+L G T+D D FG+ + ++
Sbjct: 140 EVKQLLGLMGIPVVEAPCEAEAQCANLVKAGKVYGTATEDMDALTFGSCVLLRHLLAPEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + +LT+++ I L +L+G DY ++G+GP A+E++
Sbjct: 200 KKIPIKEFHLARVLEEMQLTKDQFIDLCILLGCDYCGTIRGIGPKKAVELI--------- 250
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
Q+ +E++ +N K P D+P E + +P++ + +
Sbjct: 251 KQHKNIETV--LENIDQTKYPPPA-------------DWPYKRARELFHEPEVMKCDEVE 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L W PD++G+ +F + +S++R+ ++ + K
Sbjct: 296 LTWKDPDVEGIVKFMCGEKNFSEDRIRSAMVRMQK 330
>sp|A5DCF5|FEN1_PICGU Flap endonuclease 1 OS=Meyerozyma guilliermondii (strain ATCC 6260
/ CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL
Y-324) GN=FEN1 PE=3 SV=3
Length = 374
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
EA++LL+L G+P++ AP EAEAQCA L + ++D D + + ++ ++
Sbjct: 141 EAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEA 200
Query: 382 HVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+ D + E+ ++ I L +L+G DY ++GVGPVTA +++ + D+
Sbjct: 201 RKMPIDQIDYKKAMEGLEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ-K 497
IV+ W+ + PD+ K+ +++P E +L PD++ +
Sbjct: 260 ----IVK-------WI--EENPDS------TKFKVPENWPYAEARELFLNPDVSPGKEIN 300
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W P +D L F + G+S++RV
Sbjct: 301 LKWQEPKVDELVEFMVKQKGFSEDRV 326
>sp|C4YLS2|FEN1_CANAW Flap endonuclease 1 OS=Candida albicans (strain WO-1) GN=RAD27 PE=3
SV=1
Length = 372
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 26/206 (12%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA++LLQL G+P + AP EAEAQCA L G ++D D + + ++
Sbjct: 141 EAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + D ++T+E+ I L +L+G DY ++G+G TA +++ + D+
Sbjct: 201 RKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGSLDN- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
IVE W+ K NK T T L +++P + ++ P++ N +
Sbjct: 260 ----IVE-------WI-KNNK--TKYT-------LPENWPFDEARQLFMNPEVTNASEIS 298
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL F + G+S++R+
Sbjct: 299 LKWKEPDVDGLIEFMVKQKGFSEDRI 324
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LLQL G+P + AP EAEAQCA L G
Sbjct: 134 VTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARG 170
>sp|Q7Q323|FEN1_ANOGA Flap endonuclease 1 OS=Anopheles gambiae GN=Fen1 PE=3 SV=2
Length = 383
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + ++
Sbjct: 140 EAKELLRLMGVPYVEAPCEAEAQCAALVRAGKVYATATEDMDALTFGSNILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDS- 437
+K V + + FELT+++ I L +L+G DY ++G+GP A+E++ K +
Sbjct: 200 RKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDYCDTIRGIGPKKAIELINKHRSIEKI 259
Query: 438 ----PNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-N 492
Q YIV + W + RKL + +P++ +
Sbjct: 260 LEHLDRQKYIVP-----EGW-------NYEQARKL-----------------FKEPEVQD 290
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
+ +L W PD +GL +F ++++R+ I+K
Sbjct: 291 ADTIELKWSEPDEEGLVKFLCGDRQFNEDRIRSGAKKILK 330
>sp|A9VB27|FEN1_MONBE Flap endonuclease 1 OS=Monosiga brevicollis GN=FEN1 PE=3 SV=1
Length = 368
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 31/227 (13%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R +V+R+ E ++LL L G+PFI+AP EAEAQCA L G T+D D FG
Sbjct: 128 RRLVHVTREHNEQCRQLLTLMGIPFIIAPTEAEAQCAELVKGGKVFATATEDMDALTFGT 187
Query: 370 RTVYKNFFDKKSHVLRYTAPDIRYY---FELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ S + + R E++ E+ I + +L+G DY ++G+G A
Sbjct: 188 TVLLRHM--TFSEARKMPIQEFRLQKGGLEMSMEEFIDMCILLGCDYCDSIKGIGRQKAY 245
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ ++ +E++ + HL K + +D+ E +
Sbjct: 246 QLI---------KEHKNIETVLK-------------HLDPK--KYVIPEDWHFAEARELF 281
Query: 487 LKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
L+PD+ + + W TPD+DGL +F + G++++R+ ++ ++K
Sbjct: 282 LRPDVTPAAECEFKWTTPDIDGLVKFMCQENGFAEDRIRKSAEKLVK 328
>sp|B0DSN9|FEN11_LACBS Flap endonuclease 1-A OS=Laccaria bicolor (strain S238N-H82 / ATCC
MYA-4686) GN=FEN11 PE=3 SV=1
Length = 394
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
E + LL+L G+P ++AP EAEAQCA L G ++D D F A ++++
Sbjct: 141 ECRRLLRLMGIPVVIAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTFSEA 200
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + ++ + I L +L+G DY ++GVGP +AL+++ ++
Sbjct: 201 KKQPISEINLKEALEGLDMNMSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYG----- 255
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+V+ +R R +++ D++P + + KPD+ + +
Sbjct: 256 GLKGVVKHLRE---------------NSGCRGMQIPDEWPWEEAKKIFEKPDVLPADEVE 300
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD+DGL +F + G++++RV
Sbjct: 301 LEWTNPDVDGLVQFLVKEKGFNEDRV 326
>sp|C5M2X8|FEN1_CANTT Flap endonuclease 1 OS=Candida tropicalis (strain ATCC MYA-3404 /
T1) GN=RAD27 PE=3 SV=1
Length = 374
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR VSR+ EA++LL+L G+P + AP EAEAQCA L G ++D D +
Sbjct: 129 KRLVRVSREQNEEAKKLLELMGIPIVEAPCEAEAQCAELARGGKVYAAASEDMDTLCYEP 188
Query: 370 RTVYKNFF---DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ +K + + + ++ +E+ + L +L+G DY ++GVGPVTA
Sbjct: 189 PQLLRHLTFAEARKIPIDEISYKEAMAGLDMNKEQFVDLCILLGCDYCETIRGVGPVTAY 248
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ + S+ + W+ K N T + +++P E +
Sbjct: 249 KLIKEHG------------SLEKIVEWIEKGNTKYT----------VPENWPYAEARELF 286
Query: 487 LKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRV 523
L P++ L W PD++GL + G+S++R+
Sbjct: 287 LNPEVKKASDISLKWKEPDVEGLIEYMVKGKGFSEDRI 324
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
++ + + EA++LL+L G+P + AP EAEAQCA L G
Sbjct: 134 VSREQNEEAKKLLELMGIPIVEAPCEAEAQCAELARG 170
>sp|O65251|FEN1_ARATH Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2
Length = 383
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 29/211 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP + A EAEAQCA+L GV ++D D FGA ++ D S
Sbjct: 141 DCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I +LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 201 RKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET- 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
I+E++ + ++ +++P + + +PD+ T+ ++L
Sbjct: 260 ----ILENLNK-------------------ERYQIPEEWPYNEARKLFKEPDVITDEEQL 296
Query: 499 --AWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
W +PD +G+ +F N+ G++ +RV + +
Sbjct: 297 DIKWTSPDEEGIVQFLVNENGFNIDRVTKAI 327
>sp|C5DZA9|FEN1_ZYGRC Flap endonuclease 1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 /
CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=FEN1
PE=3 SV=1
Length = 379
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---D 378
EA+ LL+L G+P+IVAP EAEAQCA L ++D D + + ++
Sbjct: 138 EAKYLLKLMGIPYIVAPCEAEAQCAQLAKDGKVYAAASEDMDTLCYKTPYLLRHLTFSEA 197
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + ELT+E+ + L +++G DY ++G+GPVTAL+++ + +
Sbjct: 198 KKEPIHEIDTELVLQGLELTQEQFVDLGIMLGCDYCESIRGIGPVTALKLIKEHGSLEKI 257
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPD-INTNVQK 497
+ +ES + W K+ +D+P + +L PD +N+
Sbjct: 258 VE--FIESGQANNKW------------------KVPEDWPYNEARQLFLNPDVVNSQDIN 297
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD + L F ++ +++ RV
Sbjct: 298 LKWNPPDEEKLIEFLCHEKKFNEERV 323
>sp|O50123|FEN_PYRHO Flap endonuclease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=fen PE=1
SV=1
Length = 343
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 54/230 (23%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+A++LLQL G+P I AP E EAQ A + + D D LFGA + +N +
Sbjct: 134 DAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNL----T 189
Query: 382 HVLRYTAPDIRYYFEL----------------TREKLIQLALLVGSDYTPG-LQGVGPVT 424
+ P Y E+ TREKLI+LA+LVG+DY PG ++G+GP
Sbjct: 190 ITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKK 249
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIE 484
ALEI+ Y + + +F+ D ++ E
Sbjct: 250 ALEIV-----------RYSRDPLAKFQR---------------------QSDVDLYAIKE 277
Query: 485 AYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI 534
+L P + TN L+W PD +G+ +F ++ +S+ RV + + K I
Sbjct: 278 FFLNPPV-TNEYSLSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAI 326
>sp|B4KNM1|FEN1_DROMO Flap endonuclease 1 OS=Drosophila mojavensis GN=Fen1 PE=3 SV=1
Length = 388
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL+L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + ELT ++ I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCDSIKGIGPKRAIELIKTYRDIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDI-NTNVQK 497
+N +NW ++ + E +++P++ + +
Sbjct: 260 LENIDTSKYIVPENWNYQRAR------------------------ELFVEPEVTDASTID 295
Query: 498 LAWGTPDLDGLRRFAANKFGWSQNRV 523
L W PD DGL +F +++ RV
Sbjct: 296 LKWTAPDEDGLVQFLCGDRQFNEERV 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,912,767
Number of Sequences: 539616
Number of extensions: 8535275
Number of successful extensions: 31134
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 256
Number of HSP's that attempted gapping in prelim test: 29636
Number of HSP's gapped (non-prelim): 1209
length of query: 538
length of database: 191,569,459
effective HSP length: 122
effective length of query: 416
effective length of database: 125,736,307
effective search space: 52306303712
effective search space used: 52306303712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)