Query psy14291
Match_columns 538
No_of_seqs 419 out of 1784
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:06:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ory_A Flap endonuclease 1; hy 100.0 5E-56 1.7E-60 464.8 22.2 324 106-536 7-346 (363)
2 3q8k_A Flap endonuclease 1; he 100.0 1E-54 3.6E-59 451.5 26.4 325 111-537 1-334 (341)
3 1b43_A Protein (FEN-1); nuclea 100.0 3.1E-53 1.1E-57 439.6 21.7 311 110-535 1-327 (340)
4 1rxw_A Flap structure-specific 100.0 2.4E-51 8.3E-56 424.8 25.5 311 110-532 1-324 (336)
5 1a76_A Flap endonuclease-1 pro 100.0 4E-51 1.4E-55 421.6 20.4 311 110-536 1-314 (326)
6 1ul1_X Flap endonuclease-1; pr 100.0 3.7E-51 1.3E-55 430.2 17.4 323 111-535 1-332 (379)
7 2izo_A FEN1, flap structure-sp 100.0 1.8E-50 6.3E-55 420.0 20.1 316 118-536 3-332 (346)
8 3qe9_Y Exonuclease 1; exonucle 100.0 1.5E-49 5.1E-54 414.4 20.3 253 110-450 1-260 (352)
9 1bgx_T TAQ DNA polymerase; DNA 100.0 2.5E-39 8.6E-44 369.0 -5.1 267 124-520 3-280 (832)
10 1exn_A 5'-exonuclease, 5'-nucl 100.0 7.8E-36 2.7E-40 303.4 6.9 166 314-499 97-275 (290)
11 3h7i_A Ribonuclease H, RNAse H 99.8 2.1E-20 7.1E-25 190.1 4.9 135 278-423 50-211 (305)
12 2y35_A LD22664P; hydrolase-DNA 97.7 0.00015 5.2E-09 85.3 12.2 93 331-423 162-299 (1140)
13 3fqd_A Protein DHP1, 5'-3' exo 97.4 0.0042 1.4E-07 71.1 19.0 92 331-422 195-349 (899)
14 3pie_A 5'->3' exoribonuclease 96.2 0.015 5.2E-07 68.3 10.9 87 337-423 173-302 (1155)
15 3ory_A Flap endonuclease 1; hy 95.9 0.0057 2E-07 63.8 4.8 47 259-305 129-175 (363)
16 1b43_A Protein (FEN-1); nuclea 94.7 0.03 1E-06 57.5 5.6 47 260-306 116-162 (340)
17 3qe9_Y Exonuclease 1; exonucle 94.7 0.03 1E-06 58.2 5.4 44 262-305 116-159 (352)
18 2a1j_A DNA repair endonuclease 93.4 0.035 1.2E-06 43.6 2.3 21 415-435 7-27 (63)
19 1z00_B DNA repair endonuclease 91.6 0.098 3.3E-06 43.6 2.9 25 416-445 22-46 (84)
20 1x2i_A HEF helicase/nuclease; 91.2 0.11 3.7E-06 40.9 2.7 21 415-435 17-37 (75)
21 1kft_A UVRC, excinuclease ABC 90.6 0.075 2.6E-06 42.9 1.2 26 415-445 27-52 (78)
22 1z00_A DNA excision repair pro 90.5 0.13 4.5E-06 42.5 2.6 26 415-445 22-47 (89)
23 2a1j_B DNA excision repair pro 89.1 0.19 6.3E-06 41.8 2.5 20 416-435 36-55 (91)
24 2nrt_A Uvrabc system protein C 85.4 0.33 1.1E-05 47.3 2.2 21 415-435 171-191 (220)
25 2izo_A FEN1, flap structure-sp 80.9 0.88 3E-05 46.7 3.4 47 260-306 113-159 (346)
26 1ul1_X Flap endonuclease-1; pr 80.2 0.94 3.2E-05 47.2 3.4 47 260-306 121-167 (379)
27 3c65_A Uvrabc system protein C 80.0 0.35 1.2E-05 47.3 0.0 22 414-435 175-196 (226)
28 3q8k_A Flap endonuclease 1; he 79.5 1 3.6E-05 46.3 3.4 48 259-306 120-167 (341)
29 1ixr_A Holliday junction DNA h 79.3 1 3.5E-05 42.9 2.9 19 416-434 76-94 (191)
30 1rxw_A Flap structure-specific 79.0 1.1 3.8E-05 45.7 3.4 44 262-305 117-160 (336)
31 1a76_A Flap endonuclease-1 pro 78.9 1.1 3.9E-05 45.5 3.4 47 260-306 116-162 (326)
32 2ztd_A Holliday junction ATP-d 75.8 0.59 2E-05 45.3 0.2 38 392-434 73-110 (212)
33 2bgw_A XPF endonuclease; hydro 75.8 0.93 3.2E-05 43.2 1.6 20 416-435 166-185 (219)
34 1cuk_A RUVA protein; DNA repai 74.2 1.6 5.4E-05 41.8 2.8 19 416-434 77-95 (203)
35 4gfj_A Topoisomerase V; helix- 63.6 3.2 0.00011 44.2 2.5 20 416-435 472-491 (685)
36 2duy_A Competence protein come 53.3 6.7 0.00023 30.9 2.3 17 416-432 31-47 (75)
37 1ixr_A Holliday junction DNA h 47.7 10 0.00036 35.8 3.0 21 414-434 109-129 (191)
38 1s5l_U Photosystem II 12 kDa e 45.6 7.5 0.00026 35.0 1.5 20 416-435 67-88 (134)
39 3sgi_A DNA ligase; HET: DNA AM 44.9 4.6 0.00016 44.9 0.0 20 416-435 533-552 (615)
40 1vq8_Y 50S ribosomal protein L 43.3 5 0.00017 39.4 0.0 22 414-435 17-39 (241)
41 3vdp_A Recombination protein R 43.1 14 0.00049 35.6 3.1 39 416-454 30-68 (212)
42 2owo_A DNA ligase; protein-DNA 40.4 11 0.00038 42.2 2.2 20 416-435 516-535 (671)
43 1exn_A 5'-exonuclease, 5'-nucl 40.0 18 0.00063 36.3 3.6 132 113-306 2-137 (290)
44 2ztd_A Holliday junction ATP-d 40.0 13 0.00045 35.7 2.4 21 414-434 125-145 (212)
45 2w9m_A Polymerase X; SAXS, DNA 37.4 19 0.00063 39.4 3.4 16 416-431 101-116 (578)
46 3maj_A DNA processing chain A; 37.4 35 0.0012 35.7 5.2 44 397-451 17-60 (382)
47 1vdd_A Recombination protein R 35.4 22 0.00075 34.7 3.1 39 416-454 16-54 (228)
48 2ziu_A MUS81 protein; helix-ha 34.3 23 0.00078 35.4 3.2 30 416-450 241-270 (311)
49 1dgs_A DNA ligase; AMP complex 33.6 16 0.00054 41.0 2.0 20 416-435 511-530 (667)
50 3b0x_A DNA polymerase beta fam 33.2 24 0.00081 38.5 3.4 19 416-434 97-115 (575)
51 2edu_A Kinesin-like protein KI 28.4 27 0.00091 29.0 2.1 18 415-432 43-60 (98)
52 1cuk_A RUVA protein; DNA repai 28.1 25 0.00085 33.5 2.1 19 414-432 110-128 (203)
53 3c1y_A DNA integrity scanning 28.0 20 0.00068 37.5 1.5 25 416-445 319-343 (377)
54 3arc_U Photosystem II 12 kDa e 27.2 29 0.00097 29.4 2.1 19 416-435 30-48 (97)
55 4glx_A DNA ligase; inhibitor, 26.5 31 0.001 38.1 2.7 20 416-435 516-535 (586)
56 2fmp_A DNA polymerase beta; nu 26.1 29 0.00099 35.4 2.3 16 416-431 102-117 (335)
57 3n0u_A Probable N-glycosylase/ 26.0 30 0.001 33.3 2.2 25 506-531 189-213 (219)
58 2ihm_A POL MU, DNA polymerase 25.7 29 0.001 35.7 2.3 16 416-431 106-121 (360)
59 3fhg_A Mjogg, N-glycosylase/DN 25.2 35 0.0012 32.2 2.6 25 506-531 177-201 (207)
60 2bcq_A DNA polymerase lambda; 25.0 31 0.0011 35.2 2.3 16 416-431 100-115 (335)
61 1jms_A Terminal deoxynucleotid 24.5 32 0.0011 35.8 2.3 16 416-431 125-140 (381)
62 3fhf_A Mjogg, N-glycosylase/DN 23.3 38 0.0013 32.4 2.5 25 506-531 184-208 (214)
63 2i5h_A Hypothetical protein AF 21.3 43 0.0015 32.2 2.3 33 398-430 113-150 (205)
64 1bgx_T TAQ DNA polymerase; DNA 21.0 34 0.0012 39.2 1.8 31 276-306 96-127 (832)
65 1pu6_A 3-methyladenine DNA gly 20.1 43 0.0015 31.8 2.1 16 416-431 125-140 (218)
No 1
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=5e-56 Score=464.84 Aligned_cols=324 Identities=21% Similarity=0.333 Sum_probs=257.0
Q ss_pred hhhhhchhchHHHhh-hcCccc-ccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHH
Q psy14291 106 NIYIMGVNGLWKLLE-ASGKPV-PVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFE 183 (538)
Q Consensus 106 ~~~~MGi~GLw~~l~-~~~~~~-~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (538)
+-..||| |||++|+ ++.+++ ++++|+|+++|||+|+|+|++..++.. ..+..+.++ . +..++|+
T Consensus 7 ~~~~MGv-~L~~ll~~~~~~~~~~l~~l~gk~l~IDg~~~l~r~~~~~~~-~~g~~l~~~--------~-G~~T~al--- 72 (363)
T 3ory_A 7 NGVDMGV-DLKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIRQ-PDGTPLMDN--------N-GRITSHL--- 72 (363)
T ss_dssp -CCCCSC-CCGGGCCGGGEEECSSGGGGTTCEEEEEHHHHHHHHHHHCBC-TTSCBCBCT--------T-SCBCHHH---
T ss_pred CCcccCc-CHHHHhhHhcccccCCHHHhCCCEEEEehHHHHHHHHHhhhc-cCCCccCCC--------C-CCCccHH---
Confidence 3467999 9999999 788999 999999999999999999986544432 123344443 1 2233455
Q ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhh
Q psy14291 184 EEIAGGKEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGK 263 (538)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k 263 (538)
.+||.|+.+++ ..+|+| ++||||..|..|..+..+|+.++.+--+.
T Consensus 73 -----------------~gf~~r~~~ll----~~~i~P-------------v~VFDg~~p~~K~~~~~~yK~~R~~~~e~ 118 (363)
T 3ory_A 73 -----------------SGLFYRTINIV----EAGIKP-------------VYVFDGKPPELKAREIERRKAVKEEAAKK 118 (363)
T ss_dssp -----------------HHHHHHHHHHH----HTTCEE-------------EEEECSSCGGGCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHH----HcCCCc-------------EEEEcCCCccchHHHHHHHHHhhhhchHH
Confidence 67888866654 456777 99999999999999998887665433222
Q ss_pred hhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhhccccCCCCcchHh-HHHHHHHHHHcCCCcccCcchHH
Q psy14291 264 QTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRK-MLEAQELLQLFGVPFIVAPGEAE 342 (538)
Q Consensus 264 ~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~~lt~q-~~~ik~lL~~~GIp~i~APgEAD 342 (538)
+. +.+..+. ..++ ..+.++...++++ ++.++++|++|||||+++|||||
T Consensus 119 l~---------------~~~~~g~--------~~~a-------~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apgEAD 168 (363)
T 3ory_A 119 YE---------------EAVQSGD--------LELA-------RRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGE 168 (363)
T ss_dssp HH---------------HHHHHTC--------HHHH-------HHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSSCHH
T ss_pred HH---------------HHHHcCC--------HHHH-------HHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCccHH
Confidence 21 1111110 0011 1122345667664 57999999999999999999999
Q ss_pred HHHHHHHhhcCCCceEecCCceEeecCeEEEEecCCCCC------------cEEEEchhHHHHHhCCCHHHHHHHHHHcC
Q psy14291 343 AQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS------------HVLRYTAPDIRYYFELTREKLIQLALLVG 410 (538)
Q Consensus 343 aqiA~La~~g~vd~IiS~DsDllLfG~~~Vi~~~~~~~~------------~~~~~~~~~i~~~~gl~~~q~idl~~L~G 410 (538)
||||+|++.|.+++|+|+|+|+++||+.+++++++..+. ..++|+.+.+.+++|++|+||+|+|+|+|
T Consensus 169 aqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G 248 (363)
T 3ory_A 169 AQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLG 248 (363)
T ss_dssp HHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHhC
Confidence 999999999999999999999999999999998753321 23789999999999999999999999999
Q ss_pred CCCCC-CCCCCCHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHhhcCCCChhhhHhhhhccCCCCCCCHHHHHhhcCC
Q psy14291 411 SDYTP-GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKP 489 (538)
Q Consensus 411 sDyip-GVpGIG~KtA~kLL~~ygsl~~~~~e~Il~~L~~~k~~~~~~~~~~~~lr~kL~~~~i~~~fps~~lv~ly~dp 489 (538)
|||+| ||||||+|||++||++|||+ ++|++++++ ..+ .|+...+.++|++|
T Consensus 249 sDy~p~GVpGIG~KtA~kLl~~~gsl-----e~il~~~~~---------------------~~~--~~~~~~~~~~f~~p 300 (363)
T 3ory_A 249 TDYNPDGFEGIGPKKALQLVKAYGGI-----EKIPKPILK---------------------SPI--EVDVIAIKKYFLQP 300 (363)
T ss_dssp BTTBTTCSTTCCHHHHHHHHHHHTSS-----TTSCGGGCC---------------------CSS--CCCHHHHHHHHHSC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHcCCH-----HHHHHhccc---------------------ccC--CCCHHHHHHHhcCC
Confidence 99999 99999999999999999999 888765421 112 36778999999999
Q ss_pred CCCCCcccccCCCCCHHHHHHHHHHhcCCChHhhhhhhHHHHHHhhh
Q psy14291 490 DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536 (538)
Q Consensus 490 ~v~~s~~~~~w~~PD~~~L~~fl~~~~ew~~~kvd~~l~Pll~~~~~ 536 (538)
+|..+. +|+|..||.++|++|+.++++|+.++|++.+.|+.+.+++
T Consensus 301 ~v~~~~-~~~w~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~ 346 (363)
T 3ory_A 301 QVTDNY-RIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKE 346 (363)
T ss_dssp CCCSCC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcc
Confidence 998765 5999999999999999999999999999999999998874
No 2
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=1e-54 Score=451.51 Aligned_cols=325 Identities=22% Similarity=0.360 Sum_probs=257.7
Q ss_pred chhchHHHhhhcC----cccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHH
Q psy14291 111 GVNGLWKLLEASG----KPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEI 186 (538)
Q Consensus 111 Gi~GLw~~l~~~~----~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (538)
||+|||++|++.+ +++++++|+|+++|||+|.|+|++..++.. .+.++.++ .+..++|+
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~~~--~~~~l~~~---------~G~~T~al------ 63 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQ--GGDVLQNE---------EGETTSHL------ 63 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHCEE--TTEECBCT---------TSCBCHHH------
T ss_pred CchhHHHHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHcccc--ccCCCCCC---------CCCCchHH------
Confidence 8999999999875 899999999999999999999987776642 12344433 12333455
Q ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhhhhh
Q psy14291 187 AGGKEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTR 266 (538)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k~~R 266 (538)
.+||.|+.+|+ ..+|+| ++||||..|..|..+..+|+.++.+..+++..
T Consensus 64 --------------~g~~~~~~~ll----~~~i~P-------------~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~ 112 (341)
T 3q8k_A 64 --------------MGMFYRTIRMM----ENGIKP-------------VYVFDGKPPQLKSGELAKRSERRAEAEKQLQQ 112 (341)
T ss_dssp --------------HHHHHHHHHHH----TTTCEE-------------EEEECCCCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH----HCCCCc-------------eEEEeCCCcccchhhhHHHHHHHhHhHHHHHH
Confidence 67888865544 457777 99999999999999998887765443333221
Q ss_pred hhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhhccccCCCCcch-HhHHHHHHHHHHcCCCcccCcchHHHHH
Q psy14291 267 LASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVS-RKMLEAQELLQLFGVPFIVAPGEAEAQC 345 (538)
Q Consensus 267 ~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~~lt-~q~~~ik~lL~~~GIp~i~APgEADaqi 345 (538)
.... .+.++..+ +.++...+| .|++.++++|++|||||+++||||||||
T Consensus 113 a~r~---~~pe~l~~---------------------------~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~EADd~i 162 (341)
T 3q8k_A 113 AQAA---GAEQEVEK---------------------------FTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASC 162 (341)
T ss_dssp HHTT---CCHHHHHH---------------------------HHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSCHHHHH
T ss_pred HHhc---CCHHHHHH---------------------------HHhhcccCCHHHHHHHHHHHHHcCCCEEECCccHHHHH
Confidence 1111 01111111 112334454 4567999999999999999999999999
Q ss_pred HHHHhhcCCCceEecCCceEeecCeEEEEecCC---CCCcEEEEchhHHHHHhCCCHHHHHHHHHHcCCCCCCCCCCCCH
Q psy14291 346 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGP 422 (538)
Q Consensus 346 A~La~~g~vd~IiS~DsDllLfG~~~Vi~~~~~---~~~~~~~~~~~~i~~~~gl~~~q~idl~~L~GsDyipGVpGIG~ 422 (538)
|+|++.|.+++|+|+|+|+++||+.++++++.. ....+..|+.+.+.+++|++|+||+|+|+|+||||+|||||||+
T Consensus 163 a~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~~gipGiG~ 242 (341)
T 3q8k_A 163 AALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGP 242 (341)
T ss_dssp HHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSCCCTTCCH
T ss_pred HHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCccH
Confidence 999999999999999999999999999987632 22357899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHhhcCCCChhhhHhhhhccCCCCCCCHHHHHhhcCCCCCCCc-ccccCC
Q psy14291 423 VTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNV-QKLAWG 501 (538)
Q Consensus 423 KtA~kLL~~ygsl~~~~~e~Il~~L~~~k~~~~~~~~~~~~lr~kL~~~~i~~~fps~~lv~ly~dp~v~~s~-~~~~w~ 501 (538)
|||++||++||++ ++|++++++.+ .++++.|++.++..+|++|+|+.+. .++.|.
T Consensus 243 KtA~kll~~~gsl-----e~i~~~~~~~k-------------------~~~~~~~~~~~~r~l~l~~~V~~~~~~~l~~~ 298 (341)
T 3q8k_A 243 KRAVDLIQKHKSI-----EEIVRRLDPNK-------------------YPVPENWLHKEAHQLFLEPEVLDPESVELKWS 298 (341)
T ss_dssp HHHHHHHHHHCSH-----HHHHHHSCTTT-------------------SCCCTTCCHHHHHHHHHSCCCCCTTTSCCCCC
T ss_pred HHHHHHHHHcCCH-----HHHHHHHHhcC-------------------CCCCcccchHHHHHHhCCCCCCCCcccccCCC
Confidence 9999999999999 99988875432 1246777888889999999987632 689999
Q ss_pred CCCHHHHHHHHHHhcCCChHhhhhhhHHHHHHhhhc
Q psy14291 502 TPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537 (538)
Q Consensus 502 ~PD~~~L~~fl~~~~ew~~~kvd~~l~Pll~~~~~~ 537 (538)
.||.++|++||.+++||+.++|++.+-++.+..++.
T Consensus 299 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~ 334 (341)
T 3q8k_A 299 EPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGS 334 (341)
T ss_dssp CCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Confidence 999999999996669999999999999998876643
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=3.1e-53 Score=439.61 Aligned_cols=311 Identities=26% Similarity=0.388 Sum_probs=241.7
Q ss_pred hchhchHHHhhhcCcccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHHhcC
Q psy14291 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEIAGG 189 (538)
Q Consensus 110 MGi~GLw~~l~~~~~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (538)
||| |||++| +.+++++++|+|+++|||+|+|+|++..++.. ..+..+.++ . +..++|+
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~g~~l~ID~~~~l~r~~~a~~~-~~~~~l~~~--------~-G~~t~~l--------- 58 (340)
T 1b43_A 1 MGV-PIGEII--PRKEIELENLYGKKIAIDALNAIYQFLSTIRQ-KDGTPLMDS--------K-GRITSHL--------- 58 (340)
T ss_dssp -CC-CCGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBC-TTSCBCBCT--------T-SCBCHHH---------
T ss_pred CCC-ChHHHh--cccccCHHHhCCCEEEEEhHHHHHHHHHHhcc-ccCCccccc--------c-CCchHHH---------
Confidence 999 999999 78999999999999999999999987666531 112333332 1 1222344
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhhhhh--h
Q psy14291 190 KEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTR--L 267 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k~~R--~ 267 (538)
.+||.++.+|+ ..+|+| ++||||..|..|..+..+|++++++..+++.. .
T Consensus 59 -----------~g~~~~l~~ll----~~~i~p-------------v~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk 110 (340)
T 1b43_A 59 -----------SGLFYRTINLM----EAGIKP-------------VYVFDGEPPEFKKKELEKRREAREEAEEKWREALE 110 (340)
T ss_dssp -----------HHHHHHHHHHH----HTTCEE-------------EEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHH----hCCCEE-------------EEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56788866654 366777 99999999999999988876654333222210 0
Q ss_pred hhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhhccccCCCCcch-HhHHHHHHHHHHcCCCcccCcchHHHHHH
Q psy14291 268 ASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVS-RKMLEAQELLQLFGVPFIVAPGEAEAQCA 346 (538)
Q Consensus 268 A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~~lt-~q~~~ik~lL~~~GIp~i~APgEADaqiA 346 (538)
+.+ . +...++ .++...++ .+++.++++|++|||||+++|+|||||||
T Consensus 111 ~g~--~---~~~~~~---------------------------~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA 158 (340)
T 1b43_A 111 KGE--I---EEARKY---------------------------AQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAA 158 (340)
T ss_dssp HSC--H---HHHHHH---------------------------HHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCHHHHHH
T ss_pred cCC--H---HHHHHH---------------------------HHhcCCCCHHHHHHHHHHHHHcCCcEEEcChhHHHHHH
Confidence 000 0 011111 11223444 45679999999999999999999999999
Q ss_pred HHHhhcCCCceEecCCceEeecCeEEEEecCCCCC------------cEEEEchhHHHHHhCCCHHHHHHHHHHcCCCCC
Q psy14291 347 SLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS------------HVLRYTAPDIRYYFELTREKLIQLALLVGSDYT 414 (538)
Q Consensus 347 ~La~~g~vd~IiS~DsDllLfG~~~Vi~~~~~~~~------------~~~~~~~~~i~~~~gl~~~q~idl~~L~GsDyi 414 (538)
+|+++|.+++|+|+|+|+++||+.+|++++...+. ....|+.+.+.+++|++++||+|+|+|+||||+
T Consensus 159 ~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~ 238 (340)
T 1b43_A 159 YMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYN 238 (340)
T ss_dssp HHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTS
T ss_pred HHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999998753321 346799999999999999999999999999999
Q ss_pred C-CCCCCCHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHhhcCCCChhhhHhhhhccCCCCCCCHHHHHhhcCCCCCC
Q psy14291 415 P-GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493 (538)
Q Consensus 415 p-GVpGIG~KtA~kLL~~ygsl~~~~~e~Il~~L~~~k~~~~~~~~~~~~lr~kL~~~~i~~~fps~~lv~ly~dp~v~~ 493 (538)
| ||||||+|||++||++||++ ++++++. +.|+.+++.++|++|.+..
T Consensus 239 p~gv~GiG~ktA~kli~~~gsl-----e~il~~~---------------------------~~~~~~~~~~~~~~~~v~d 286 (340)
T 1b43_A 239 PGGIKGIGLKKALEIVRHSKDP-----LAKFQKQ---------------------------SDVDLYAIKEFFLNPPVTD 286 (340)
T ss_dssp TTCSTTCCHHHHHHHHHTCSSG-----GGGTGGG---------------------------CSSCHHHHHHHHHSCCCCC
T ss_pred CCCCCCccHHHHHHHHHHcCCH-----HHHHcCC---------------------------CCccHHHHHHHHhCCCCCC
Confidence 9 99999999999999999999 7776542 2344556777889987765
Q ss_pred CcccccCCCCCHHHHHHHHHHhcCCChHhhhhhhHHHHHHhh
Q psy14291 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535 (538)
Q Consensus 494 s~~~~~w~~PD~~~L~~fl~~~~ew~~~kvd~~l~Pll~~~~ 535 (538)
..++.|..||.++|++|+.++++|+.++|++.+.|+.+..+
T Consensus 287 -~~~~~~~~pd~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~ 327 (340)
T 1b43_A 287 -NYNLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIK 327 (340)
T ss_dssp -CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred -cccCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhc
Confidence 67899999999999999965699999999999999988765
No 4
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=2.4e-51 Score=424.83 Aligned_cols=311 Identities=22% Similarity=0.294 Sum_probs=236.9
Q ss_pred hchhchHHHhhhcCcccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHHhcC
Q psy14291 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEIAGG 189 (538)
Q Consensus 110 MGi~GLw~~l~~~~~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (538)
||| |||++| +.+++++++|+|+++|||+|+|+|++..++.. ..+..+.++ -+.+ ++|+
T Consensus 1 MGI-~L~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~-~~~~~l~~~--------~G~~-t~a~--------- 58 (336)
T 1rxw_A 1 MGA-DIGDLF--EREEVELEYFSGKKIAVDAFNTLYQFISIIRQ-PDGTPLKDS--------QGRI-TSHL--------- 58 (336)
T ss_dssp --C-TGGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBC-TTSCBCBCT--------TSCB-CHHH---------
T ss_pred CCC-ChHHHH--hcceeCHHHhCCCEEEEEhHHHHHHHHHhhcc-ccCCccccc--------CCCc-cHHH---------
Confidence 999 999999 78999999999999999999999987766532 112233332 1112 2343
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhhhhhhhh
Q psy14291 190 KEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLAS 269 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k~~R~A~ 269 (538)
.+|+.|+.+| +..+|+| ++||||..|..|..+..+|+.++.+.-+.+..
T Consensus 59 -----------~g~~~~l~~l----l~~~i~P-------------v~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~--- 107 (336)
T 1rxw_A 59 -----------SGILYRVSNM----VEVGIRP-------------VFVFDGEPPEFKKAEIEERKKRRAEAEEMWIA--- 107 (336)
T ss_dssp -----------HHHHHHHHHH----HHHTCEE-------------EEEECCSCCGGGHHHHHHHHHHHHHHHHHHHH---
T ss_pred -----------HHHHHHHHHH----HHCCCEE-------------EEEEcCCCCcccccchHHHHHHHHHHHHHHHH---
Confidence 5677775554 4456667 99999999999998888877665332222111
Q ss_pred cccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhhccccCCCCcch-HhHHHHHHHHHHcCCCcccCcchHHHHHHHH
Q psy14291 270 TITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVS-RKMLEAQELLQLFGVPFIVAPGEAEAQCASL 348 (538)
Q Consensus 270 ~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~~lt-~q~~~ik~lL~~~GIp~i~APgEADaqiA~L 348 (538)
..+... .+. ..+. .+...++ .+++.++++|++|||||+++||||||+||+|
T Consensus 108 ------------~~~~g~-------~~l-~~~~--------~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~l 159 (336)
T 1rxw_A 108 ------------ALQAGD-------KDA-KKYA--------QAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYM 159 (336)
T ss_dssp ------------HHHHTC-------TTH-HHHH--------HHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHH
T ss_pred ------------HHHhch-------HHH-HHHH--------HhhccCCHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHH
Confidence 111100 000 0000 0112333 3567999999999999999999999999999
Q ss_pred HhhcCCCceEecCCceEeecCeEEEEecCCCCC------------cEEEEchhHHHHHhCCCHHHHHHHHHHcCCCCCCC
Q psy14291 349 ELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS------------HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPG 416 (538)
Q Consensus 349 a~~g~vd~IiS~DsDllLfG~~~Vi~~~~~~~~------------~~~~~~~~~i~~~~gl~~~q~idl~~L~GsDyipG 416 (538)
++.|.+++|+|+|+|+++|++.+|++++...+. .+..|+.+.+.+++|++|+||+|+|+|+||||+||
T Consensus 160 a~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipG 239 (336)
T 1rxw_A 160 AAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEG 239 (336)
T ss_dssp HHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCC
T ss_pred HHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcCCCCCCC
Confidence 999999999999999999999999887643211 45789999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHhhcCCCChhhhHhhhhccCCCCCCCHHHHHhhcCCCCCCCcc
Q psy14291 417 LQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQ 496 (538)
Q Consensus 417 VpGIG~KtA~kLL~~ygsl~~~~~e~Il~~L~~~k~~~~~~~~~~~~lr~kL~~~~i~~~fps~~lv~ly~dp~v~~s~~ 496 (538)
|||||+|||++||++||++ ++|++++++ ++. + ..++++++++|+++ +.+
T Consensus 240 v~GiG~KtA~kLl~~~gsl-----e~i~~~~~~-----------------~l~-~-------~~~l~~i~~~~~v~-~~~ 288 (336)
T 1rxw_A 240 VKGVGVKKALNYIKTYGDI-----FRALKALKV-----------------NID-H-------VEEIRNFFLNPPVT-DDY 288 (336)
T ss_dssp CTTCCHHHHHHHHHHHSSH-----HHHHHHHTC-----------------------------CHHHHHHHHSCCCC-CCC
T ss_pred CCCcCHHHHHHHHHHcCCH-----HHHHHhCCC-----------------CCc-c-------HHHHHHHHhCCCCC-Ccc
Confidence 9999999999999999999 999988641 111 0 12899999999998 578
Q ss_pred cccCCCCCHHHHHHHHHHhcCCChHhhhhhhHHHHH
Q psy14291 497 KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532 (538)
Q Consensus 497 ~~~w~~PD~~~L~~fl~~~~ew~~~kvd~~l~Pll~ 532 (538)
++.|..||.++|.+|+.+++||+.++++..+.++.+
T Consensus 289 ~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~ 324 (336)
T 1rxw_A 289 RIEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKA 324 (336)
T ss_dssp CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHGGGCC
T ss_pred cccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHh
Confidence 899999999999999955599999999988887764
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=4e-51 Score=421.58 Aligned_cols=311 Identities=20% Similarity=0.335 Sum_probs=235.2
Q ss_pred hchhchHHHhhhcCcccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHHhcC
Q psy14291 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEIAGG 189 (538)
Q Consensus 110 MGi~GLw~~l~~~~~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (538)
||| |||++| ..+++++++|+|+++|||+|+|+|++..++.. ..+..+.++ . +..++|+
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~-~~~~~l~~~--------~-G~~t~~l--------- 58 (326)
T 1a76_A 1 MGV-QFGDFI--PKNIISFEDLKGKKVAIDGMNALYQFLTSIRL-RDGSPLRNR--------K-GEITSAY--------- 58 (326)
T ss_dssp -CC-CCGGGS--CCEECCSGGGTTCEEEEEHHHHHHHHHHHSBC-TTSCBCBCT--------T-SCBCHHH---------
T ss_pred CCC-ChHHHH--hhcccCHHHhCCCEEEEEhHHHHHHHHHhhcc-ccccccccc--------c-CCccHHH---------
Confidence 999 999999 88999999999999999999999987766531 112233332 1 1122343
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhhhhhhhh
Q psy14291 190 KEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLAS 269 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k~~R~A~ 269 (538)
.+||.|+.++ +..+|+| ++||||..|..|..+..+|+.++.+..+...
T Consensus 59 -----------~g~~~~l~~l----l~~~i~P-------------v~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~---- 106 (326)
T 1a76_A 59 -----------NGVFYKTIHL----LENDITP-------------IWVFDGEPPKLKEKTRKVRREMKEKAELKMK---- 106 (326)
T ss_dssp -----------HHHHHHHHHH----HHTTCEE-------------EEEECCCSSCCCCSSCCSSCSSSCSSCSCCC----
T ss_pred -----------HHHHHHHHHH----HHCCCeE-------------EEEEeCcCcccchhhHHHHHHHHHhhHHHHH----
Confidence 5677775554 3466777 9999999999998887666443211000000
Q ss_pred cccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhhccccCCCCcch-HhHHHHHHHHHHcCCCcccCcchHHHHHHHH
Q psy14291 270 TITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVS-RKMLEAQELLQLFGVPFIVAPGEAEAQCASL 348 (538)
Q Consensus 270 ~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~~lt-~q~~~ik~lL~~~GIp~i~APgEADaqiA~L 348 (538)
. ..+. +..+ ....+.++...++ .+++.++++|+++||||+++|||||||||+|
T Consensus 107 ~----~~~~----------------g~~~------~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~L 160 (326)
T 1a76_A 107 E----AIKK----------------EDFE------EAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYM 160 (326)
T ss_dssp C----CCSH----------------HHHH------TTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHH
T ss_pred H----HHHc----------------CCHH------HHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCccHHHHHHHH
Confidence 0 0000 0000 0011112233444 4567999999999999999999999999999
Q ss_pred HhhcCCCceEecCCceEeecCeEEEEecCCCCCcEEEEchhHHHHHhCCCHHHHHHHHHHcCCCCCC-CCCCCCHHHHHH
Q psy14291 349 ELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALE 427 (538)
Q Consensus 349 a~~g~vd~IiS~DsDllLfG~~~Vi~~~~~~~~~~~~~~~~~i~~~~gl~~~q~idl~~L~GsDyip-GVpGIG~KtA~k 427 (538)
+++|.+++|+|+|+|+++||+.++++++...++.+++|+.+.+.+++|++|+||+|+|+|+||||+| ||||||+|||++
T Consensus 161 a~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~ktA~k 240 (326)
T 1a76_A 161 AKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKEMPELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYE 240 (326)
T ss_dssp HHTTSSSEEECSSSGGGGGTCSEEEESSSSCSSCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHHHHH
T ss_pred HHCCCEEEEecCCcccceecCCEEEEeecCCCCceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHH
Confidence 9999999999999999999999999987554457899999999999999999999999999999999 999999999999
Q ss_pred HHHHcCCCCCCchhHHH-HHHHHHHHHHhhcCCCChhhhHhhhhccCCCCCCCHHHHHhhcCCCCCCCcccccCCCCCHH
Q psy14291 428 ILAKFSPSDSPNQNYIV-ESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLD 506 (538)
Q Consensus 428 LL~~ygsl~~~~~e~Il-~~L~~~k~~~~~~~~~~~~lr~kL~~~~i~~~fps~~lv~ly~dp~v~~s~~~~~w~~PD~~ 506 (538)
||++ |++ ++++ +++++++ ++..+|++|.+..+ .++.|..||.+
T Consensus 241 li~~-gsl-----e~i~~~~~~~~~-----------------------------~~~~~~l~~~l~~~-~~~~~~~~d~~ 284 (326)
T 1a76_A 241 LVRS-GVA-----KDVLKKEVEYYD-----------------------------EIKRIFKEPKVTDN-YSLSLKLPDKE 284 (326)
T ss_dssp HHHH-TCH-----HHHHHHHSTTHH-----------------------------HHHHHHHSCCCCCC-CCCCCCCCCHH
T ss_pred HHHc-CCH-----HHHHHHHHhHHH-----------------------------HHHHHHhCCCCCCC-ccCCCCCCCHH
Confidence 9999 999 9998 8766442 12245666666542 37899999999
Q ss_pred HHHHHHHHhcCCChHhhhhhhHHHHHHhhh
Q psy14291 507 GLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536 (538)
Q Consensus 507 ~L~~fl~~~~ew~~~kvd~~l~Pll~~~~~ 536 (538)
+|++|+.++++|+.++|++.+.|+.+.+++
T Consensus 285 ~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~ 314 (326)
T 1a76_A 285 GIIKFLVDENDFNYDRVKKHVDKLYNLIAN 314 (326)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 999996455999999999999999987764
No 6
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=3.7e-51 Score=430.18 Aligned_cols=323 Identities=22% Similarity=0.345 Sum_probs=239.7
Q ss_pred chhchHHHhhhcC----cccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHH
Q psy14291 111 GVNGLWKLLEASG----KPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEI 186 (538)
Q Consensus 111 Gi~GLw~~l~~~~----~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (538)
||+|||++|++.. +++++++|+|++||||+|+|+|++..++.. .+..+.+ ..+..++|+
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~l~~l~g~~l~IDg~~~lyr~~~a~~~--~~~~l~~---------~~G~~t~~l------ 63 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQ--GGDVLQN---------EEGETTSHL------ 63 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC------------------------CCHHH------
T ss_pred CcChhHHHHHHhccccceeeCHHHcCCCEEEEEchHHHHHHHHhCCC--cccccCc---------CCCCCchHH------
Confidence 8999999999876 799999999999999999999987665532 1112211 112233455
Q ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhhhhh
Q psy14291 187 AGGKEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTR 266 (538)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k~~R 266 (538)
.+||.|+.+++ ..||+| ++||||..|..|..+..+|+.++.+..+..
T Consensus 64 --------------~g~~~~~~~ll----~~~i~P-------------~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~-- 110 (379)
T 1ul1_X 64 --------------MGMFYRTIRMM----ENGIKP-------------VYVFDGKPPQLKSGELAKRSERRAEAEKQL-- 110 (379)
T ss_dssp --------------HHHHHHHHHHH----HTTCCE-------------EEEECCSCCSCCCCCCCCC-------------
T ss_pred --------------HHHHHHHHHHH----HCCCCe-------------EEEEeCCCcccccchHHHHHhhhhHHHHHH--
Confidence 67888865544 456777 999999999999988877765532221111
Q ss_pred hhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhhccccCCCCcch-HhHHHHHHHHHHcCCCcccCcchHHHHH
Q psy14291 267 LASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVS-RKMLEAQELLQLFGVPFIVAPGEAEAQC 345 (538)
Q Consensus 267 ~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~~lt-~q~~~ik~lL~~~GIp~i~APgEADaqi 345 (538)
.+......+ .+ ...+.++...++ .+++.++++|++|||||+++||||||||
T Consensus 111 -------------~~~~~~g~~------~~---------~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apgEADd~i 162 (379)
T 1ul1_X 111 -------------QQAQAAGAE------QE---------VEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASC 162 (379)
T ss_dssp ----------------------------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSCHHHHH
T ss_pred -------------HHHHHcCCH------HH---------HHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCCcHHHHH
Confidence 011000000 00 011122334454 5678999999999999999999999999
Q ss_pred HHHHhhcCCCceEecCCceEeecCeEEEEecCCC---CCcEEEEchhHHHHHhCCCHHHHHHHHHHcCCCCCCCCCCCCH
Q psy14291 346 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK---KSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGP 422 (538)
Q Consensus 346 A~La~~g~vd~IiS~DsDllLfG~~~Vi~~~~~~---~~~~~~~~~~~i~~~~gl~~~q~idl~~L~GsDyipGVpGIG~ 422 (538)
|+|++.|.+++|+|+|+|+++||+..|++++... ...+..|+.+.+.+++|++++||+|+|+|+||||.+||||||+
T Consensus 163 A~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~ 242 (379)
T 1ul1_X 163 AALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGP 242 (379)
T ss_dssp HHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSCCCTTCCH
T ss_pred HHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcCCCCCCcCH
Confidence 9999999999999999999999999999876321 2357899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHhhcCCCChhhhHhhhhccCCCCCCCHHHHHhhcCCCCCCCc-ccccCC
Q psy14291 423 VTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNV-QKLAWG 501 (538)
Q Consensus 423 KtA~kLL~~ygsl~~~~~e~Il~~L~~~k~~~~~~~~~~~~lr~kL~~~~i~~~fps~~lv~ly~dp~v~~s~-~~~~w~ 501 (538)
|||++||++||++ ++|++++++.+. .++..|+......+|.+|.|+.+. .++.|.
T Consensus 243 KtA~kLl~~~gsl-----e~i~~~~~~~k~-------------------~~~~~~~~~~ar~l~l~~~v~~~~~~~l~~~ 298 (379)
T 1ul1_X 243 KRAVDLIQKHKSI-----EEIVRRLDPNKY-------------------PVPENWLHKEAHQLFLEPEVLDPESVELKWS 298 (379)
T ss_dssp HHHHHHHHHSSSH-----HHHHTTCCCTTS-------------------CCCSSCCHHHHHHHHHSCCCCCGGGCCCCCC
T ss_pred HHHHHHHHHcCCH-----HHHHHHHHhhcc-------------------cCCCcCCHHHHHHHhcCCeeCCCCCccCCCC
Confidence 9999999999999 888877654311 245667666777788888877632 289999
Q ss_pred CCCHHHHHHHHHHhcCCChHhhhhhhHHHHHHhh
Q psy14291 502 TPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535 (538)
Q Consensus 502 ~PD~~~L~~fl~~~~ew~~~kvd~~l~Pll~~~~ 535 (538)
.||.++|++|+.++++|+.++|+..+.++.+..+
T Consensus 299 ~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~~~~ 332 (379)
T 1ul1_X 299 EPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQ 332 (379)
T ss_dssp CCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 9999999998776799999999999999887654
No 7
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-50 Score=420.03 Aligned_cols=316 Identities=21% Similarity=0.276 Sum_probs=213.7
Q ss_pred HhhhcCcccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHHhcCcchhhHHH
Q psy14291 118 LLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEIAGGKEEKTEKI 197 (538)
Q Consensus 118 ~l~~~~~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (538)
+++++.+++++++|+|+++|||+|+|+|++..++.. ..+..+.++ . +..++|+
T Consensus 3 ~~~~~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~-~~g~~l~~~--------~-G~~t~al----------------- 55 (346)
T 2izo_A 3 LVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQ-PDGTPLMDS--------Q-GRVTSHL----------------- 55 (346)
T ss_dssp CCCCCCEECCHHHHTTEEEEEEHHHHHHHHHHSCCC-C---CCBCS--------S-SCBCHHH-----------------
T ss_pred cCCCCcccCCHHHhCCCEEEEEhHHHHHHHHHhccc-ccccccccc--------C-CCccHHH-----------------
Confidence 567889999999999999999999999987765532 112233332 1 1122344
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhhhhhhhhcccHHhHH
Q psy14291 198 KLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSR 277 (538)
Q Consensus 198 ~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k~~R~A~~it~~m~~ 277 (538)
.+||.++.+++ ..||+| ++||||..|..|..+..+|+.++.+..+.+
T Consensus 56 ---~g~~~~~~~ll----~~~i~P-------------v~vFDG~~~~~r~~~~~~yk~~R~~~~~~l------------- 102 (346)
T 2izo_A 56 ---SGLFYRTINIL----EEGVIP-------------IYVFDGKPPEQKSEELERRRKAKEEAERKL------------- 102 (346)
T ss_dssp ---HHHHHHHHHHH----HHTEEE-------------EEEECC-------------------------------------
T ss_pred ---HHHHHHHHHHH----HCCCcE-------------EEEECCCCcchhhhHHHHHHHHHHHhHHHH-------------
Confidence 67788865554 446667 999999999999888887766543221111
Q ss_pred HHHHHHHhhCCcEEeCCCchhhhhhhhhhccccCCCCcch-HhHHHHHHHHHHcCCCcccCcchHHHHHHHHHhhcCCCc
Q psy14291 278 EAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVS-RKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQG 356 (538)
Q Consensus 278 e~~kLL~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~~lt-~q~~~ik~lL~~~GIp~i~APgEADaqiA~La~~g~vd~ 356 (538)
.++...+. ..++ ..+.++...++ .+++.++++|++|||||+++|||||||||+|++.|.+++
T Consensus 103 --~~~~~~g~--------~~~a-------~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~ 165 (346)
T 2izo_A 103 --ERAKSEGK--------IEEL-------RKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWA 165 (346)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSE
T ss_pred --HHHHhcCC--------HHHH-------HHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEE
Confidence 11111110 0000 01112334454 556899999999999999999999999999999999999
Q ss_pred eEecCCceEeecCeEEEEecCCCCC------------cEEEEchhHHHHHhCCCHHHHHHHHHHcCCCCCC-CCCCCCHH
Q psy14291 357 VITDDSDIWLFGARTVYKNFFDKKS------------HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPV 423 (538)
Q Consensus 357 IiS~DsDllLfG~~~Vi~~~~~~~~------------~~~~~~~~~i~~~~gl~~~q~idl~~L~GsDyip-GVpGIG~K 423 (538)
|+|+|+|+++||+.+|++++...+. .+..|+.+.+.+++|++++||+|+|+|+||||+| ||||||+|
T Consensus 166 I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~K 245 (346)
T 2izo_A 166 AASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPE 245 (346)
T ss_dssp EECSSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHH
T ss_pred EECCCCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHH
Confidence 9999999999999999987642211 3578999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHcCCCCCCchhHHHHHHHHHHHHHhhcCCCChhhhHhhhhccCCCCCCCHHHHHhhcCCCCCCCcccccCCCC
Q psy14291 424 TALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTP 503 (538)
Q Consensus 424 tA~kLL~~ygsl~~~~~e~Il~~L~~~k~~~~~~~~~~~~lr~kL~~~~i~~~fps~~lv~ly~dp~v~~s~~~~~w~~P 503 (538)
||++||++||++ ++|++++++.+ ++..++++++++++++|++..+..++.|..|
T Consensus 246 tA~kLi~~~gsl-----e~i~~~~~~~k---------------------~~~~~~~~~l~~i~~~~~v~~~~~~l~~~~~ 299 (346)
T 2izo_A 246 RALKIIKKYGKI-----EKAMEYGEISK---------------------KDINFNIDEIRGLFLNPQVVKPEEALDLNEP 299 (346)
T ss_dssp HHHHHHHHSSCC-------------------------------------------CTTHHHHHHSCCCCCCC-CCCCCCC
T ss_pred HHHHHHHHcCCH-----HHHHHHHHhcc---------------------CCCCccHHHHHHHhhCCCCCCccccCccCCC
Confidence 999999999999 99998886541 1333446899999999999988889999999
Q ss_pred CHHHHHHHHHHhcCCChHhhhhhhHHHHHHhhh
Q psy14291 504 DLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536 (538)
Q Consensus 504 D~~~L~~fl~~~~ew~~~kvd~~l~Pll~~~~~ 536 (538)
|.++|.+|+.++++|+.++++..+.|+.+.+++
T Consensus 300 d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~~ 332 (346)
T 2izo_A 300 NGEDIINILVYEHNFSEERVKNGIERLTKAIKE 332 (346)
T ss_dssp CHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Confidence 999999999556999999999999999988763
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=1.5e-49 Score=414.39 Aligned_cols=253 Identities=23% Similarity=0.297 Sum_probs=193.0
Q ss_pred hchhchHHHhhhcCcccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHHhcC
Q psy14291 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEIAGG 189 (538)
Q Consensus 110 MGi~GLw~~l~~~~~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (538)
|||+|||++|+++++++++++|+|++||||+|+|||+...++... + ..+...+|+
T Consensus 1 MGI~GL~~~L~~~~~~~~l~~l~Gk~vaIDas~wL~~~~~~~~~~-------------l---~~G~~t~~l--------- 55 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEK-------------L---AKGEPTDRY--------- 55 (352)
T ss_dssp -CCTTHHHHTTTSEEEEEGGGGTTSEEEEETHHHHHHHHHHTHHH-------------H---HTTCCCCHH---------
T ss_pred CCcchHHHHHHhhCCcCCHHHhCCcEEEEecHHHHHHhhhccchh-------------h---cCCCCcHHH---------
Confidence 999999999999999999999999999999999999754332110 1 122222343
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhhhhhhhh
Q psy14291 190 KEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLAS 269 (538)
Q Consensus 190 ~~~~~~~~~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k~~R~A~ 269 (538)
.++|.|. +.+|..+||+| +|||||.+++.|+.+..+|+.++++..++...
T Consensus 56 -----------~~~~~r~---l~~L~~~gI~P-------------vfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~--- 105 (352)
T 3qe9_Y 56 -----------VGFCMKF---VNMLLSHGIKP-------------ILVFDGCTLPSKKEVERSRRERRQANLLKGKQ--- 105 (352)
T ss_dssp -----------HHHHHHH---HHHHHHTTCEE-------------EEEECCSCCTTTHHHHHHHHHHHHHHHHHHHH---
T ss_pred -----------HHHHHHH---HHHHHHcCCEE-------------EEEECCCCcHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445443 44555677787 99999999999999988888776554443321
Q ss_pred cccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhhccccCCCCcchHhH-HHHHHHHHHcCCCcccCcchHHHHHHHH
Q psy14291 270 TITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASL 348 (538)
Q Consensus 270 ~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~~lt~q~-~~ik~lL~~~GIp~i~APgEADaqiA~L 348 (538)
+.+.. ...++...+ ++...+++++ ..++++|++|||||+++|+|||||||+|
T Consensus 106 ------------~~~~g--------~~~~a~~~f-------~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~L 158 (352)
T 3qe9_Y 106 ------------LLREG--------KVSEARECF-------TRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYL 158 (352)
T ss_dssp ------------HTTSS--------CCHHHHHHH-------GGGCCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHH
T ss_pred ------------HHHhC--------CHHHHHHHH-------hhcCCCCHHHHHHHHHHHHHcCCcEEECCcchHHHHHHH
Confidence 11111 001111111 1224455555 6899999999999999999999999999
Q ss_pred HhhcCCCceEecCCceEeecCeEEEEecCCCCCcEEEEchhHH--HHHhC--CCHHHHHHHHHHcCCCCCCCCCCCCHHH
Q psy14291 349 ELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI--RYYFE--LTREKLIQLALLVGSDYTPGLQGVGPVT 424 (538)
Q Consensus 349 a~~g~vd~IiS~DsDllLfG~~~Vi~~~~~~~~~~~~~~~~~i--~~~~g--l~~~q~idl~~L~GsDyipGVpGIG~Kt 424 (538)
+++|.+++|+|+|+|+++||+.+|++++... +....|+.+.+ .+++| ++++||+|+|+|+||||+|||||||+||
T Consensus 159 a~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~kt 237 (352)
T 3qe9_Y 159 NKAGIVQAIITEDSALLAFGCKKVILKMDQF-GNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAK 237 (352)
T ss_dssp HHTTSCSEEECSCGGGGGGTCSEEEESCCTT-SEEEEEEGGGGTTCCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHH
T ss_pred HHCCCeEEEEeCCcCcccccCCeEEEeccCC-CCcEEEeHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCeeHHH
Confidence 9999999999999999999999998876433 33456787775 57889 9999999999999999999999999999
Q ss_pred HHHHHHHc--CCCCCCchhHHHHHHHHH
Q psy14291 425 ALEILAKF--SPSDSPNQNYIVESMRRF 450 (538)
Q Consensus 425 A~kLL~~y--gsl~~~~~e~Il~~L~~~ 450 (538)
|++||++| |++ +++++++++.
T Consensus 238 A~kli~~~~~~~l-----~~il~~~~~~ 260 (352)
T 3qe9_Y 238 ACKVLRLANNPDI-----VKVIKKIGHY 260 (352)
T ss_dssp HHHHHHHCCCSCH-----HHHHTTHHHH
T ss_pred HHHHHHHhCCCCH-----HHHHHHHHhh
Confidence 99999999 577 8999888754
No 9
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=2.5e-39 Score=368.97 Aligned_cols=267 Identities=19% Similarity=0.266 Sum_probs=211.5
Q ss_pred cccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHHhcCcchhhHHHHHHHHH
Q psy14291 124 KPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEIAGGKEEKTEKIKLTREM 203 (538)
Q Consensus 124 ~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 203 (538)
-++++++++|++++||+|.|+|++..++.. +.+. .+..++++ .+|
T Consensus 3 ~~~~l~~~~~~~llIDg~~~l~ra~~a~~~------l~~~---------~G~~t~av--------------------~gf 47 (832)
T 1bgx_T 3 GMLPLFEPKGRVLLVDGHHLAYRTFHALKG------LTTS---------RGEPVQAV--------------------YGF 47 (832)
T ss_dssp CSSCCCCCCTTSCCCCCSTHHHHTTSSCTT------CBCS---------SSCBCSSS--------------------TTH
T ss_pred CccCHHHhCCCEEEEEChHHHHHHHhcCCc------cccC---------CCcEehHH--------------------HHH
Confidence 368999999999999999999987655422 1111 11112233 456
Q ss_pred HHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHHhhhhhhhhcccHHhHHHHHHHH
Q psy14291 204 LAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELL 283 (538)
Q Consensus 204 ~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~~k~~R~A~~it~~m~~e~~kLL 283 (538)
+.++.+++. ..+++| ++||||..+..+....
T Consensus 48 ~~~l~~ll~---~~~~~~-------------v~vFDg~~~tfR~~~~--------------------------------- 78 (832)
T 1bgx_T 48 AKSLLKALK---EDGDAV-------------IVVFDAKAPSFRHEAY--------------------------------- 78 (832)
T ss_dssp HHHHHHGGG---TCCSCC-------------CCCCCCSSSCSSSGGG---------------------------------
T ss_pred HHHHHHHHH---HcCCeE-------------EEEEcCCCccccccch---------------------------------
Confidence 666444332 223555 9999997665543221
Q ss_pred HhhCCcEEeCCCchhhhhhhhhhccccCCCC----cchHhHHHHHHHHHHcCCCcccCcc-hHHHHHHHHHh----hcCC
Q psy14291 284 QLFGVPFIVAPGEAEAQCASLELGTDKKRRP----YVSRKMLEAQELLQLFGVPFIVAPG-EAEAQCASLEL----GNHT 354 (538)
Q Consensus 284 ~~~g~P~iv~d~Eaeaqca~l~~~~~k~rr~----~lt~q~~~ik~lL~~~GIp~i~APg-EADaqiA~La~----~g~v 354 (538)
+.||++|. ++..|++.++++|++||||++++|| ||||+||+|++ .|..
T Consensus 79 -----------------------~~YKa~R~~~pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~ 135 (832)
T 1bgx_T 79 -----------------------GGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYE 135 (832)
T ss_dssp -----------------------GTTTSCCCCCCTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred -----------------------HHHHhccccChHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCe
Confidence 22333332 3567788999999999999999998 99999999998 4667
Q ss_pred CceEecCCceEeecCeEEEEecCCCCCcEEEEchhHHHHHhCCCHHHHHHHHHHcC--CCCCCCCCCCCHHHHHHHHHHc
Q psy14291 355 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVG--SDYTPGLQGVGPVTALEILAKF 432 (538)
Q Consensus 355 d~IiS~DsDllLfG~~~Vi~~~~~~~~~~~~~~~~~i~~~~gl~~~q~idl~~L~G--sDyipGVpGIG~KtA~kLL~~y 432 (538)
..|+|+|+|++.|++..|..... .+ ..|+.+.+.++||++|+||+|+|+|+| |||+|||||||+|||.+||++|
T Consensus 136 v~IvS~DkDllql~~~~v~~~~~--~g--~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~ 211 (832)
T 1bgx_T 136 VRILTADKDLYQLLSDRIHVLHP--EG--YLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEW 211 (832)
T ss_dssp BCCCCSSTTCCTTCCTTBCBCCS--SS--CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGT
T ss_pred EEEEeCCCChhhcCcCCEEEEeC--CC--cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHC
Confidence 78999999999887766654432 22 689999999999999999999999999 9999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhcCCCChhhhHhhhhccCCCCCCCHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHH
Q psy14291 433 SPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFA 512 (538)
Q Consensus 433 gsl~~~~~e~Il~~L~~~k~~~~~~~~~~~~lr~kL~~~~i~~~fps~~lv~ly~dp~v~~s~~~~~w~~PD~~~L~~fl 512 (538)
|++ ++|+++++++++ +++++|.+. .+.++.|++|+++++|++++.+.+ .|..||.++|.+||
T Consensus 212 gsl-----e~i~~~~~~~~~----------~~~~~l~~~-~~~a~ls~~L~~i~~d~~~~~~~~--~~~~~d~~~l~~~~ 273 (832)
T 1bgx_T 212 GSL-----EALLKNLDRLKP----------AIREKILAH-MDDLKLSWDLAKVRTDLPLEVDFA--KRREPDRERLRAFL 273 (832)
T ss_dssp TSS-----CSSSSSCCCCCT----------TTSHHHHSS-CSSTTSGGGSSCCCSCCCCCCCCC--CCCCCCHHHHHHHH
T ss_pred CCH-----HHHHHHHHHhCh----------HHHHHHHHh-HHHHHHHHHHHhhccCCCCCCChh--HcCCccHHHHHHHH
Confidence 999 999988876643 457788887 489999999999999999998776 89999999999999
Q ss_pred HHhcCCCh
Q psy14291 513 ANKFGWSQ 520 (538)
Q Consensus 513 ~~~~ew~~ 520 (538)
.+ +||++
T Consensus 274 ~~-~~f~~ 280 (832)
T 1bgx_T 274 ER-LEFGS 280 (832)
T ss_dssp TT-TTCCS
T ss_pred HH-cCCHH
Confidence 76 99985
No 10
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=7.8e-36 Score=303.41 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=141.7
Q ss_pred CcchHh-HHHHHHHHHH--cCCCcccCcc-hHHHHHHHHHhhcCCC----ceEecCCceEee-cCeEEEEecCCCCCcEE
Q psy14291 314 PYVSRK-MLEAQELLQL--FGVPFIVAPG-EAEAQCASLELGNHTQ----GVITDDSDIWLF-GARTVYKNFFDKKSHVL 384 (538)
Q Consensus 314 ~~lt~q-~~~ik~lL~~--~GIp~i~APg-EADaqiA~La~~g~vd----~IiS~DsDllLf-G~~~Vi~~~~~~~~~~~ 384 (538)
.++..| ++.++++|++ ||||++.+|| ||||+||+|++++... .|+|+|+|++.+ +....+++.. ...
T Consensus 97 e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~~~----~~~ 172 (290)
T 1exn_A 97 KALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFT----TRR 172 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEETT----TTE
T ss_pred hhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEEEECC----CCE
Confidence 357788 8899999999 9999999999 9999999999985433 499999999955 4333334432 468
Q ss_pred EEchhHHHHHhCCCH-HHHHHHHHHcC--CCCCCCCCCCCHHHHHHHHHHcCCCCCCchhHHHHHHHHH-HHHHhhcCCC
Q psy14291 385 RYTAPDIRYYFELTR-EKLIQLALLVG--SDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRF-KNWLAKKNKP 460 (538)
Q Consensus 385 ~~~~~~i~~~~gl~~-~q~idl~~L~G--sDyipGVpGIG~KtA~kLL~~ygsl~~~~~e~Il~~L~~~-k~~~~~~~~~ 460 (538)
.|+.+.+.++||++| +||+|+++|+| |||+|||||||+|||.+||++||++ |+|+++++++ ++
T Consensus 173 ~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsl-----e~i~~~~~~~~~~-------- 239 (290)
T 1exn_A 173 EYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNV-----LDIIDQLPLPGKQ-------- 239 (290)
T ss_dssp EECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSH-----HHHHHHCSCSCCC--------
T ss_pred EEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCH-----HHHHHHHHHhccH--------
Confidence 999999999999999 99999999999 9999999999999999999999999 9999998876 33
Q ss_pred ChhhhHhhhhccCCCCCCCHHHHHhhcCCCCCCCccccc
Q psy14291 461 DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLA 499 (538)
Q Consensus 461 ~~~lr~kL~~~~i~~~fps~~lv~ly~dp~v~~s~~~~~ 499 (538)
+++++|+++. +.++.|++|+++.+|.+++.+.+++.
T Consensus 240 --~~~~~L~~~~-~~~~ls~~L~~i~~d~~~~~~~~~l~ 275 (290)
T 1exn_A 240 --KYIQNLNASE-ELLFRNLILVDLPTYCVDAIAAVGQD 275 (290)
T ss_dssp --HHHHHHHTCH-HHHHHHHHHHCHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHhH-HHHHHHHHhceeeeCCCCCCChhhhh
Confidence 4577888874 88999999999999988776554443
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.79 E-value=2.1e-20 Score=190.10 Aligned_cols=135 Identities=14% Similarity=0.030 Sum_probs=106.3
Q ss_pred HHHHHHHh---hCC--cEEeCCCchhhhhhhhhhccccCCCCc----chHhH--------HHHHHHHHHcCCCcccCcc-
Q psy14291 278 EAQELLQL---FGV--PFIVAPGEAEAQCASLELGTDKKRRPY----VSRKM--------LEAQELLQLFGVPFIVAPG- 339 (538)
Q Consensus 278 e~~kLL~~---~g~--P~iv~d~Eaeaqca~l~~~~~k~rr~~----lt~q~--------~~ik~lL~~~GIp~i~APg- 339 (538)
...++++. .++ -+++||......=|+..|+.||++|++ +..|+ +.++++|++||||++..||
T Consensus 50 ~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~ 129 (305)
T 3h7i_A 50 SIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKY 129 (305)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTC
T ss_pred HHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCc
Confidence 34556666 566 356778642222388889999999965 44555 6899999999999999999
Q ss_pred hHHHHHHHHHhhcCCCc----eEecCCceE-eec--CeEEEEecCCCCCcEEEEchhHHHHHhCCCHHHHHHHHHHcC--
Q psy14291 340 EAEAQCASLELGNHTQG----VITDDSDIW-LFG--ARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVG-- 410 (538)
Q Consensus 340 EADaqiA~La~~g~vd~----IiS~DsDll-LfG--~~~Vi~~~~~~~~~~~~~~~~~i~~~~gl~~~q~idl~~L~G-- 410 (538)
||||+||+|++++...+ |+|+|+|++ |++ ...++..+ . .+.|.++||+ |+|++|+++|+|
T Consensus 130 EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~~~~~~-~---------~~~V~ek~Gv-P~q~iD~~aL~GDs 198 (305)
T 3h7i_A 130 EANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNVKQWSPM-H---------KKWVKIKSGS-AEIDCMTKILKGDK 198 (305)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEEEEETT-T---------TEEECSSCSC-HHHHHHHHHHHCBG
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCeEEEecC-C---------HHHHHHHhCC-HHHHhhHHheeCcc
Confidence 99999999999866543 999999999 885 45555433 1 2346778998 999999999999
Q ss_pred CCCCCCCCCCCHH
Q psy14291 411 SDYTPGLQGVGPV 423 (538)
Q Consensus 411 sDyipGVpGIG~K 423 (538)
|||+|||||||++
T Consensus 199 SDNIPGVpGIG~~ 211 (305)
T 3h7i_A 199 KDNVASVKVRSDF 211 (305)
T ss_dssp GGTBCCTTSCTTH
T ss_pred ccCCCCCCcCCcc
Confidence 9999999999995
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=97.70 E-value=0.00015 Score=85.33 Aligned_cols=93 Identities=22% Similarity=0.342 Sum_probs=58.4
Q ss_pred CCCccc----CcchHHHHHHHHHhh---------cCCCceEecCCceEeec------CeEEEEecC--CC--------CC
Q psy14291 331 GVPFIV----APGEAEAQCASLELG---------NHTQGVITDDSDIWLFG------ARTVYKNFF--DK--------KS 381 (538)
Q Consensus 331 GIp~i~----APgEADaqiA~La~~---------g~vd~IiS~DsDllLfG------~~~Vi~~~~--~~--------~~ 381 (538)
++.+|. .|||+|--|-..-+. +..+.|++.|.|++++| .-.++|... .. ..
T Consensus 162 ~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~~ 241 (1140)
T 2y35_A 162 RCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEET 241 (1140)
T ss_dssp SSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGGC
T ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeeccccccccccccccccc
Confidence 455554 588999966555442 12234999999999653 235666421 11 12
Q ss_pred cEEEEchhHHHHH----h--------CCC----HHHHHHHHHHcCCCCCCCCCCCCHH
Q psy14291 382 HVLRYTAPDIRYY----F--------ELT----REKLIQLALLVGSDYTPGLQGVGPV 423 (538)
Q Consensus 382 ~~~~~~~~~i~~~----~--------gl~----~~q~idl~~L~GsDyipGVpGIG~K 423 (538)
.+..++...+.+. + .++ .+.|+.+|.|+|.||+|++|++...
T Consensus 242 ~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~ 299 (1140)
T 2y35_A 242 RFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHIS 299 (1140)
T ss_dssp EEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTT
T ss_pred ceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCccccC
Confidence 4556665544332 2 233 3577789999999999999998643
No 13
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=97.45 E-value=0.0042 Score=71.06 Aligned_cols=92 Identities=22% Similarity=0.361 Sum_probs=57.6
Q ss_pred CCCccc----CcchHHHHHHHHHhhc---------CCCceEecCCceEeec------CeEEEEec--CCC----------
Q psy14291 331 GVPFIV----APGEAEAQCASLELGN---------HTQGVITDDSDIWLFG------ARTVYKNF--FDK---------- 379 (538)
Q Consensus 331 GIp~i~----APgEADaqiA~La~~g---------~vd~IiS~DsDllLfG------~~~Vi~~~--~~~---------- 379 (538)
++.+|. .|||+|--|-..-+.. ..+.|++.|.|++++| .-.|+|.- +..
T Consensus 195 ~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~ 274 (899)
T 3fqd_A 195 NVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEER 274 (899)
T ss_dssp TCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTT
T ss_pred cceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhh
Confidence 455554 4889999776655531 2234999999999663 34677632 110
Q ss_pred -----------------CCcEEEEchhHHHH----HhCC-------C----HHHHHHHHHHcCCCCCCCCCCCCH
Q psy14291 380 -----------------KSHVLRYTAPDIRY----YFEL-------T----REKLIQLALLVGSDYTPGLQGVGP 422 (538)
Q Consensus 380 -----------------~~~~~~~~~~~i~~----~~gl-------~----~~q~idl~~L~GsDyipGVpGIG~ 422 (538)
...+.+++..-+.+ .+.+ + -+.||.+|.|+|.|++|.+|.+-.
T Consensus 275 ~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 275 LGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp TTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred ccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 01244555544433 3332 2 258888999999999999997754
No 14
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=96.24 E-value=0.015 Score=68.26 Aligned_cols=87 Identities=20% Similarity=0.351 Sum_probs=54.2
Q ss_pred CcchHHHHHHHHHhhc---------CCCceEecCCceEeec------CeEEEEec--CCC---------CCcEEEEchhH
Q psy14291 337 APGEAEAQCASLELGN---------HTQGVITDDSDIWLFG------ARTVYKNF--FDK---------KSHVLRYTAPD 390 (538)
Q Consensus 337 APgEADaqiA~La~~g---------~vd~IiS~DsDllLfG------~~~Vi~~~--~~~---------~~~~~~~~~~~ 390 (538)
.|||+|-=|-..-+.- ..+.|++.|+|++++| .-.++|.- +.. ...+.+++..-
T Consensus 173 vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~~~~~f~~l~i~~ 252 (1155)
T 3pie_A 173 VPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSI 252 (1155)
T ss_pred CCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCcccccccccccCCeEEEEHHH
Confidence 4889999666655542 1234999999999664 23466642 111 12345565544
Q ss_pred HHHH----h---------CCC----HHHHHHHHHHcCCCCCCCCCCCCHH
Q psy14291 391 IRYY----F---------ELT----REKLIQLALLVGSDYTPGLQGVGPV 423 (538)
Q Consensus 391 i~~~----~---------gl~----~~q~idl~~L~GsDyipGVpGIG~K 423 (538)
+.+. | .++ -+.|+.+|.|+|.|++|.+|.+...
T Consensus 253 LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~ 302 (1155)
T 3pie_A 253 LREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLK 302 (1155)
T ss_pred HHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCcC
Confidence 4332 1 122 2467779999999999999988643
No 15
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=95.89 E-value=0.0057 Score=63.82 Aligned_cols=47 Identities=34% Similarity=0.569 Sum_probs=42.2
Q ss_pred HHHhhhhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhh
Q psy14291 259 LERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLE 305 (538)
Q Consensus 259 ee~~k~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~ 305 (538)
++..++.+.+.++|.+|...++++|+.+|+|++++++||+|||+++.
T Consensus 129 ~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apgEADaqiA~La 175 (363)
T 3ory_A 129 ELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIV 175 (363)
T ss_dssp HHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCccHHHHHHHHH
Confidence 34556777888999999999999999999999999999999999886
No 16
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=94.73 E-value=0.03 Score=57.52 Aligned_cols=47 Identities=36% Similarity=0.593 Sum_probs=41.1
Q ss_pred HHhhhhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhh
Q psy14291 260 ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306 (538)
Q Consensus 260 e~~k~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~ 306 (538)
...++.+.+..++..+...++++|+.+|+|++++|+||++||+++..
T Consensus 116 ~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~ 162 (340)
T 1b43_A 116 EARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAA 162 (340)
T ss_dssp HHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHH
Confidence 34556667788999999999999999999999999999999998864
No 17
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=94.66 E-value=0.03 Score=58.15 Aligned_cols=44 Identities=32% Similarity=0.298 Sum_probs=39.0
Q ss_pred hhhhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhh
Q psy14291 262 GKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLE 305 (538)
Q Consensus 262 ~k~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~ 305 (538)
.++.+++.+++++|...++++|+.+|+|+++++.||++||+++.
T Consensus 116 ~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La 159 (352)
T 3qe9_Y 116 RECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLN 159 (352)
T ss_dssp HHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECCcchHHHHHHHH
Confidence 34455678899999999999999999999999999999998875
No 18
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=93.41 E-value=0.035 Score=43.59 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=19.8
Q ss_pred CCCCCCCHHHHHHHHHHcCCC
Q psy14291 415 PGLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 415 pGVpGIG~KtA~kLL~~ygsl 435 (538)
..|||||+|++..||+.|||+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~ 27 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNI 27 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSH
T ss_pred HcCCCCCHHHHHHHHHHcCCH
Confidence 379999999999999999998
No 19
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=91.63 E-value=0.098 Score=43.57 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCchhHHHH
Q psy14291 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVE 445 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl~~~~~e~Il~ 445 (538)
.|||||+|++..||+.||++ ++|.+
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl-----~~i~~ 46 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNI-----AELAA 46 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCH-----HHHHH
T ss_pred hCCCCCHHHHHHHHHHcCCH-----HHHHH
Confidence 79999999999999999999 66654
No 20
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=91.23 E-value=0.11 Score=40.93 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCC
Q psy14291 415 PGLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 415 pGVpGIG~KtA~kLL~~ygsl 435 (538)
.||||||+++|..|+..||++
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~ 37 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSV 37 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSH
T ss_pred cCCCCCCHHHHHHHHHHcCCH
Confidence 389999999999999999998
No 21
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=90.64 E-value=0.075 Score=42.91 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCchhHHHH
Q psy14291 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445 (538)
Q Consensus 415 pGVpGIG~KtA~kLL~~ygsl~~~~~e~Il~ 445 (538)
.+|||||+++|.+|++.||++ +++.+
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl-----~~l~~ 52 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGL-----QGLRN 52 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCH-----HHHHH
T ss_pred hcCCCCCHHHHHHHHHHcCCH-----HHHHH
Confidence 489999999999999999997 65553
No 22
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=90.52 E-value=0.13 Score=42.45 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCchhHHHH
Q psy14291 415 PGLQGVGPVTALEILAKFSPSDSPNQNYIVE 445 (538)
Q Consensus 415 pGVpGIG~KtA~kLL~~ygsl~~~~~e~Il~ 445 (538)
.+|||||+++|.+|++.||++ +++.+
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl-----~~l~~ 47 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSL-----EQLIA 47 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBH-----HHHHH
T ss_pred HcCCCCCHHHHHHHHHHCCCH-----HHHHh
Confidence 389999999999999999997 65553
No 23
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=89.09 E-value=0.19 Score=41.81 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHcCCC
Q psy14291 416 GLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl 435 (538)
+|||||+++|.+|++.||++
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~ 55 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSL 55 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSH
T ss_pred cCCCCCHHHHHHHHHHCCCH
Confidence 78999999999999999997
No 24
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=85.40 E-value=0.33 Score=47.34 Aligned_cols=21 Identities=19% Similarity=0.615 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCC
Q psy14291 415 PGLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 415 pGVpGIG~KtA~kLL~~ygsl 435 (538)
.||||||+++|..|++.|||+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl 191 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSL 191 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSH
T ss_pred cCCCCcCHHHHHHHHHHcCCH
Confidence 599999999999999999998
No 25
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=80.88 E-value=0.88 Score=46.72 Aligned_cols=47 Identities=32% Similarity=0.503 Sum_probs=33.2
Q ss_pred HHhhhhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhh
Q psy14291 260 ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306 (538)
Q Consensus 260 e~~k~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~ 306 (538)
+..++.+.+..++..+...++++|+.+|+|++++|+||++||+++..
T Consensus 113 ~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~ 159 (346)
T 2izo_A 113 ELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNK 159 (346)
T ss_dssp ------------CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHH
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHh
Confidence 34566677888999999999999999999999999999999998864
No 26
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=80.25 E-value=0.94 Score=47.16 Aligned_cols=47 Identities=43% Similarity=0.644 Sum_probs=36.7
Q ss_pred HHhhhhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhh
Q psy14291 260 ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306 (538)
Q Consensus 260 e~~k~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~ 306 (538)
+..++.+.+.+++.++...++++|+.+|+|++++++||++||+++..
T Consensus 121 ~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~ 167 (379)
T 1ul1_X 121 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVK 167 (379)
T ss_dssp --------CCCCCCSCHHHHHHHHHHHTCCEEECSSCHHHHHHHHHH
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCCcHHHHHHHHHh
Confidence 45567777888999999999999999999999999999999998864
No 27
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=80.02 E-value=0.35 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHcCCC
Q psy14291 414 TPGLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 414 ipGVpGIG~KtA~kLL~~ygsl 435 (538)
+.||||||+++|..|++.|||+
T Consensus 175 L~~IpGIG~k~ak~Ll~~FGSl 196 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSV 196 (226)
T ss_dssp ----------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCH
Confidence 3599999999999999999998
No 28
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=79.48 E-value=1 Score=46.28 Aligned_cols=48 Identities=42% Similarity=0.620 Sum_probs=43.0
Q ss_pred HHHhhhhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhh
Q psy14291 259 LERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306 (538)
Q Consensus 259 ee~~k~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~ 306 (538)
++..++.+++..+|.++...++++|+.+|+|++++++||++||+++..
T Consensus 120 e~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~ 167 (341)
T 3q8k_A 120 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVK 167 (341)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHh
Confidence 445667888899999999999999999999999999999999988764
No 29
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=79.28 E-value=1 Score=42.85 Aligned_cols=19 Identities=42% Similarity=0.856 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHcCC
Q psy14291 416 GLQGVGPVTALEILAKFSP 434 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygs 434 (538)
+|+|||||+|..+|..|++
T Consensus 76 ~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPP 94 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCH
T ss_pred cCCCcCHHHHHHHHHhCCh
Confidence 5999999999999999998
No 30
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=79.05 E-value=1.1 Score=45.68 Aligned_cols=44 Identities=36% Similarity=0.572 Sum_probs=39.0
Q ss_pred hhhhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhh
Q psy14291 262 GKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLE 305 (538)
Q Consensus 262 ~k~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~ 305 (538)
.++.+.+..++.++...++++|+.+|+|++++++||||||+++.
T Consensus 117 ~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la 160 (336)
T 1rxw_A 117 KKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMA 160 (336)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHHH
Confidence 34455677899999999999999999999999999999998876
No 31
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=78.89 E-value=1.1 Score=45.46 Aligned_cols=47 Identities=34% Similarity=0.552 Sum_probs=42.1
Q ss_pred HHhhhhhhhhcccHHhHHHHHHHHHhhCCcEEeCCCchhhhhhhhhh
Q psy14291 260 ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306 (538)
Q Consensus 260 e~~k~~R~A~~it~~m~~e~~kLL~~~g~P~iv~d~Eaeaqca~l~~ 306 (538)
+..++.+++..++..+...++++|+.+|+|++++|+||++||+++..
T Consensus 116 ~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~ 162 (326)
T 1a76_A 116 EAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAK 162 (326)
T ss_dssp TTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCccHHHHHHHHHH
Confidence 44567778889999999999999999999999999999999988764
No 32
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=75.81 E-value=0.59 Score=45.26 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=26.1
Q ss_pred HHHhCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy14291 392 RYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434 (538)
Q Consensus 392 ~~~~gl~~~q~idl~~L~GsDyipGVpGIG~KtA~kLL~~ygs 434 (538)
...||+....-.++..++. +|+|||||+|..+|..|+.
T Consensus 73 ~~LyGF~~~~Er~lf~~L~-----sv~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLL-----SVSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp EEEEEESSHHHHHHHHHHH-----TSTTCCHHHHHHHHHHSCH
T ss_pred cceEecCcHHHHHHHHHhc-----CcCCcCHHHHHHHHHhCCH
Confidence 4456765433333333322 3999999999999999987
No 33
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=75.77 E-value=0.93 Score=43.23 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHcCCC
Q psy14291 416 GLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl 435 (538)
+|||||+++|..|++.||++
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~ 185 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSL 185 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSH
T ss_pred cCCCCCHHHHHHHHHHcCCH
Confidence 89999999999999999997
No 34
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=74.23 E-value=1.6 Score=41.84 Aligned_cols=19 Identities=47% Similarity=0.667 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHcCC
Q psy14291 416 GLQGVGPVTALEILAKFSP 434 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygs 434 (538)
+|+|||||+|..+|..|++
T Consensus 77 ~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 77 KTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HSSSCCHHHHHHHHHHSCH
T ss_pred cCCCcCHHHHHHHHhhCCh
Confidence 4999999999999999998
No 35
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=63.60 E-value=3.2 Score=44.16 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHcCCC
Q psy14291 416 GLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl 435 (538)
.||||||++|..||.+||++
T Consensus 472 AIaGIGp~tAeRLLEkFGSV 491 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGY 491 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSH
T ss_pred ccCCCCHHHHHHHHHHhcCH
Confidence 78999999999999999998
No 36
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=53.32 E-value=6.7 Score=30.94 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHc
Q psy14291 416 GLQGVGPVTALEILAKF 432 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~y 432 (538)
.|||||+++|.+++..+
T Consensus 31 ~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TSTTCCHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 68999999999999876
No 37
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=47.73 E-value=10 Score=35.81 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=18.1
Q ss_pred CCCCCCCCHHHHHHHHHHcCC
Q psy14291 414 TPGLQGVGPVTALEILAKFSP 434 (538)
Q Consensus 414 ipGVpGIG~KtA~kLL~~ygs 434 (538)
+..|||||+|+|.+++.++.+
T Consensus 109 L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 109 LTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp HTTSTTCCHHHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHHH
Confidence 579999999999999887754
No 38
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=45.56 E-value=7.5 Score=35.02 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHH--cCCC
Q psy14291 416 GLQGVGPVTALEILAK--FSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~--ygsl 435 (538)
.+|||||++|.++++. |.++
T Consensus 67 ~LpGiGp~~A~~II~~GpF~sv 88 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKNAPYESV 88 (134)
T ss_dssp GSTTCTHHHHHHHHHTCCCSSG
T ss_pred HCCCCCHHHHHHHHHcCCCCCH
Confidence 5799999999999953 4444
No 39
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=44.86 E-value=4.6 Score=44.88 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHcCCC
Q psy14291 416 GLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl 435 (538)
||||||+++|..|++.||++
T Consensus 533 GIp~VG~~~ak~La~~Fgsl 552 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSL 552 (615)
T ss_dssp --------------------
T ss_pred CCCCCCHHHHHHHHHHcCCH
Confidence 99999999999999999998
No 40
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=43.27 E-value=5 Score=39.42 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHH-cCCC
Q psy14291 414 TPGLQGVGPVTALEILAK-FSPS 435 (538)
Q Consensus 414 ipGVpGIG~KtA~kLL~~-ygsl 435 (538)
+..|||||+++|..|+.. |+++
T Consensus 17 L~~IpGIGpk~a~~Ll~~gf~sv 39 (241)
T 1vq8_Y 17 LTDISGVGPSKAESLREAGFESV 39 (241)
T ss_dssp -----------------------
T ss_pred HhcCCCCCHHHHHHHHHcCCCCH
Confidence 347899999999999997 8887
No 41
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=43.14 E-value=14 Score=35.64 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL 454 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl~~~~~e~Il~~L~~~k~~~ 454 (538)
-+||||+|+|.++.-..-..+-...+.+.+.|.+.+..+
T Consensus 30 ~LPGIG~KsA~RlA~hLL~~~~~~~~~La~al~~~~~~i 68 (212)
T 3vdp_A 30 KLPGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKL 68 (212)
T ss_dssp TSTTCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 789999999999865433221111234444555554433
No 42
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=40.45 E-value=11 Score=42.25 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHcCCC
Q psy14291 416 GLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl 435 (538)
||||||+++|..|++.||++
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl 535 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTL 535 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSH
T ss_pred cccCccHHHHHHHHHHcCCH
Confidence 89999999999999999998
No 43
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=40.03 E-value=18 Score=36.30 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=72.8
Q ss_pred hchHHHhhhcCcccccccccCeEEEeehhhHHHhhhhhhhhhccccccchhhHHHHHHHHhhhhhhhHHHHHHHhcCcch
Q psy14291 113 NGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEIEFEEEIAGGKEE 192 (538)
Q Consensus 113 ~GLw~~l~~~~~~~~~~~l~G~~laiD~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (538)
+||-.++. .+.++.++ .++.++||+|.|+|++..+ .+|. | |+
T Consensus 2 ~~~~~~~~--~~~~~~~~-~~~lllIDg~~llyRa~~~----~~G~----------------p---av------------ 43 (290)
T 1exn_A 2 KSWGKFIE--EEEAEMAS-RRNLMIVDGTNLGFRFKHN----NSKK----------------P---FA------------ 43 (290)
T ss_dssp --------------------CEEEEEEHHHHHHHHHHH----CSSS----------------C---CH------------
T ss_pred cchHHHhh--hccccccc-CCCEEEEECcHHHHHHHhC----CCCc----------------h---HH------------
Confidence 46667773 45556677 8999999999999975431 1111 1 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceEEEecCCccccchhhHHHHHHHHHHHH-hhhhhhhhcc
Q psy14291 193 KTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLER-GKQTRLASTI 271 (538)
Q Consensus 193 ~~~~~~~~~~~~~r~~~ll~~l~~~~ikp~~~~~~~~~~~~~v~VFDG~~p~~K~~tLekRr~qLqee~-~k~~R~A~~i 271 (538)
.+|+.++.+++.. .+| ..+++||||+.+..+.....+...++.+.- +++ .....+
T Consensus 44 --------~Gf~~~l~~ll~~-----~~p----------~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~-~~~e~L 99 (290)
T 1exn_A 44 --------SSYVSTIQSLAKS-----YSA----------RTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRT-EEEKAL 99 (290)
T ss_dssp --------HHHHHHHHHHHHH-----TTE----------EEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSC-HHHHHH
T ss_pred --------HHHHHHHHHHHHH-----cCC----------CeEEEEEcCCCchhhhhCcHHHHcCCCCCCcccc-ccchhH
Confidence 5677787776654 233 124899998766444333332222222211 111 112445
Q ss_pred cHHhHHHHHHHHHh--hCCcEEeCCC-chhhhhhhhhh
Q psy14291 272 TEQMSREAQELLQL--FGVPFIVAPG-EAEAQCASLEL 306 (538)
Q Consensus 272 t~~m~~e~~kLL~~--~g~P~iv~d~-Eaeaqca~l~~ 306 (538)
..+|+..++++|+. +|+|++..++ ||.++|+.+..
T Consensus 100 ~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~ 137 (290)
T 1exn_A 100 DEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVK 137 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHH
Confidence 55657789999999 9999999999 99999977654
No 44
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=39.98 E-value=13 Score=35.75 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.9
Q ss_pred CCCCCCCCHHHHHHHHHHcCC
Q psy14291 414 TPGLQGVGPVTALEILAKFSP 434 (538)
Q Consensus 414 ipGVpGIG~KtA~kLL~~ygs 434 (538)
+..|||||+|||.+++.++.+
T Consensus 125 L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 125 LTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHHTT
T ss_pred HhhCCCCCHHHHHHHHHHHHH
Confidence 358999999999999877765
No 45
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=37.38 E-value=19 Score=39.43 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=15.0
Q ss_pred CCCCCCHHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAK 431 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ 431 (538)
+|+|||||+|.+++..
T Consensus 101 ~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 101 GVRGLGPKKIRSLWLA 116 (578)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHc
Confidence 8999999999999987
No 46
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=37.36 E-value=35 Score=35.70 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCCCCCCchhHHHHHHHHHH
Q psy14291 397 LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFK 451 (538)
Q Consensus 397 l~~~q~idl~~L~GsDyipGVpGIG~KtA~kLL~~ygsl~~~~~e~Il~~L~~~k 451 (538)
++.+.......|. -+||||+++..+|++.||+. +++++.+..+.
T Consensus 17 m~~~e~~~wL~L~------~~~gvG~~~~~~Ll~~fgs~-----~~~~~a~~~~~ 60 (382)
T 3maj_A 17 LTEAQRIDWMRLI------RAENVGPRTFRSLINHFGSA-----RAALERLPELA 60 (382)
T ss_dssp SCHHHHHHHHHHH------TSTTCCHHHHHHHHHHHSSH-----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH------cCCCCCHHHHHHHHHHcCCH-----HHHHHcCHHHH
Confidence 4566666666665 67899999999999999998 88888765543
No 47
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=35.35 E-value=22 Score=34.71 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL 454 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl~~~~~e~Il~~L~~~k~~~ 454 (538)
-+||||+|+|.++.-..-..+-.....+.+.+.+.+..+
T Consensus 16 ~LPGIG~KSA~RlA~hLL~~~~~~~~~La~al~~~~~~i 54 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDL 54 (228)
T ss_dssp TSTTCCHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 789999999999865433221111133444455544433
No 48
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=34.29 E-value=23 Score=35.36 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCchhHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRF 450 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl~~~~~e~Il~~L~~~ 450 (538)
.||||+++.|..++.+|+++ ..++++.++.
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp-----~~L~~Ay~~~ 270 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTV-----SSLLQAYDKC 270 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSH-----HHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHCCCH-----HHHHHHHHhc
Confidence 78999999999999999998 7777766553
No 49
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=33.64 E-value=16 Score=41.00 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=19.1
Q ss_pred CCCCCCHHHHHHHHHHcCCC
Q psy14291 416 GLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl 435 (538)
||||||+++|..|++.||++
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl 530 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTM 530 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBH
T ss_pred ccCCccHHHHHHHHHHcCCH
Confidence 89999999999999999997
No 50
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=33.18 E-value=24 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHcCC
Q psy14291 416 GLQGVGPVTALEILAKFSP 434 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygs 434 (538)
+|+|||||+|.+++...|.
T Consensus 97 ~v~GvGpk~A~~~~~~lg~ 115 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGI 115 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCC
T ss_pred cCCCcCHHHHHHHHHhcCC
Confidence 7899999999999987543
No 51
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=28.42 E-value=27 Score=28.97 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHHHc
Q psy14291 415 PGLQGVGPVTALEILAKF 432 (538)
Q Consensus 415 pGVpGIG~KtA~kLL~~y 432 (538)
..|||||+++|.+++..+
T Consensus 43 ~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHH
Confidence 368999999999999876
No 52
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=28.13 E-value=25 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.2
Q ss_pred CCCCCCCCHHHHHHHHHHc
Q psy14291 414 TPGLQGVGPVTALEILAKF 432 (538)
Q Consensus 414 ipGVpGIG~KtA~kLL~~y 432 (538)
+..|||||+|+|.+++.++
T Consensus 110 L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 110 LVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHTSTTCCHHHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHH
Confidence 4689999999998876543
No 53
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=28.05 E-value=20 Score=37.49 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCchhHHHH
Q psy14291 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVE 445 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl~~~~~e~Il~ 445 (538)
.||+||++.|.+|+.+||++ +++++
T Consensus 319 ~IPrl~~~iae~Lv~~FGsL-----q~Il~ 343 (377)
T 3c1y_A 319 TVARIPLSIGYNVVRMFKTL-----DQISK 343 (377)
T ss_dssp HTSCCCHHHHHHHHHHHCSH-----HHHTT
T ss_pred hCCCCCHHHHHHHHHHhCCH-----HHHHh
Confidence 68999999999999999999 66664
No 54
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=27.25 E-value=29 Score=29.38 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHcCCC
Q psy14291 416 GLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl 435 (538)
.+||||+++|.+++. +|..
T Consensus 30 ~lpGIG~~~A~~IV~-~GpF 48 (97)
T 3arc_U 30 QYRGLYPTLAKLIVK-NAPY 48 (97)
T ss_dssp GSTTCTTHHHHHHHH-HCCC
T ss_pred HCCCCCHHHHHHHHH-cCCC
Confidence 689999999999998 4443
No 55
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=26.45 E-value=31 Score=38.10 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHcCCC
Q psy14291 416 GLQGVGPVTALEILAKFSPS 435 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ygsl 435 (538)
|||+||.++|..|.+.|+++
T Consensus 516 GI~~vG~~~a~~La~~f~sl 535 (586)
T 4glx_A 516 GIREVGEATAAGLAAYFGTL 535 (586)
T ss_dssp TCTTCCHHHHHHHHHHHCSH
T ss_pred CCCchhHHHHHHHHHHcCCH
Confidence 78888888888777888887
No 56
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=26.12 E-value=29 Score=35.39 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAK 431 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ 431 (538)
.|||||+|||.+|..+
T Consensus 102 ~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 102 RVSGIGPSAARKFVDE 117 (335)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHc
Confidence 8999999999999877
No 57
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=25.95 E-value=30 Score=33.29 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCChHhhhhhhHHHH
Q psy14291 506 DGLRRFAANKFGWSQNRVDQTLIPIM 531 (538)
Q Consensus 506 ~~L~~fl~~~~ew~~~kvd~~l~Pll 531 (538)
+.+.+++++ +|++...+|-+|.-..
T Consensus 189 ~~~~~~a~~-~g~~~~~ldl~lW~~~ 213 (219)
T 3n0u_A 189 EILRKVAEA-FGESPGKFDLYLWYLV 213 (219)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 457777766 9999999998876543
No 58
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=25.73 E-value=29 Score=35.71 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAK 431 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ 431 (538)
.|+|||+|||.+|.++
T Consensus 106 ~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQE 121 (360)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHc
Confidence 8999999999999876
No 59
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=25.22 E-value=35 Score=32.17 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCChHhhhhhhHHHH
Q psy14291 506 DGLRRFAANKFGWSQNRVDQTLIPIM 531 (538)
Q Consensus 506 ~~L~~fl~~~~ew~~~kvd~~l~Pll 531 (538)
..+.+|++. ++++...+|-++.-+.
T Consensus 177 ~~l~~~~~~-~~~~~~~lDl~lw~~~ 201 (207)
T 3fhg_A 177 NILKSIASN-LNMSVGILDLFIWYKE 201 (207)
T ss_dssp HHHHHHHHH-TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence 456677766 9999999988776543
No 60
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=25.05 E-value=31 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAK 431 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ 431 (538)
.|+|||+|||.+|..+
T Consensus 100 ~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHc
Confidence 8999999999999876
No 61
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=24.50 E-value=32 Score=35.78 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAK 431 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ 431 (538)
+|+|||+|||.+|.++
T Consensus 125 ~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRM 140 (381)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHc
Confidence 8999999999999876
No 62
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=23.29 E-value=38 Score=32.41 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCChHhhhhhhHHHH
Q psy14291 506 DGLRRFAANKFGWSQNRVDQTLIPIM 531 (538)
Q Consensus 506 ~~L~~fl~~~~ew~~~kvd~~l~Pll 531 (538)
..+.+|.++ ++++...+|-+|.-..
T Consensus 184 ~~l~~~g~~-~g~~~g~lDl~lW~~~ 208 (214)
T 3fhf_A 184 NILRDIGEE-VNLKLSELDLYIWYLR 208 (214)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 356777766 9999999998876543
No 63
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=21.33 E-value=43 Score=32.15 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHcC---CCC--CCCCCCCCHHHHHHHHH
Q psy14291 398 TREKLIQLALLVG---SDY--TPGLQGVGPVTALEILA 430 (538)
Q Consensus 398 ~~~q~idl~~L~G---sDy--ipGVpGIG~KtA~kLL~ 430 (538)
....|++|..-++ .+. +..+||||+++|.++|.
T Consensus 113 ~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIe 150 (205)
T 2i5h_A 113 DEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIE 150 (205)
T ss_dssp THHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHH
T ss_pred chhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHH
Confidence 4677888755444 222 34799999999999995
No 64
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=21.01 E-value=34 Score=39.24 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhCCcEEeCCC-chhhhhhhhhh
Q psy14291 276 SREAQELLQLFGVPFIVAPG-EAEAQCASLEL 306 (538)
Q Consensus 276 ~~e~~kLL~~~g~P~iv~d~-Eaeaqca~l~~ 306 (538)
+..++++|+.+|+|++++++ ||.++|+.+..
T Consensus 96 ~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~ 127 (832)
T 1bgx_T 96 LALIKELVDLLGLARLEVPGYEADDVLASLAK 127 (832)
T ss_dssp GGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEeCCccHHHHHHHHHH
Confidence 45688999999999999998 99999987754
No 65
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=20.12 E-value=43 Score=31.83 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.3
Q ss_pred CCCCCCHHHHHHHHHH
Q psy14291 416 GLQGVGPVTALEILAK 431 (538)
Q Consensus 416 GVpGIG~KtA~kLL~~ 431 (538)
.+||||+|||--++..
T Consensus 125 ~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 125 DQKGIGKESADAILCY 140 (218)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 7899999999776653
Done!