Your job contains 1 sequence.
>psy14291
MGIENLYQSPWTNMSQWRYVLPSVALPIQRVGAQRKTLKSKAASNADKVRSDLLKNLLEQ
QLLNDVLGKNEMALPPPSVSREVDMFELPPAPAQTVQDEEEDTLENIYIMGVNGLWKLLE
ASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIIDAEEKDILEMIRAEEENEI
EFEEEIAGGKEEKTEKIKLTREMLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDY
GCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQ
CASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITD
DSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGV
GPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNV
SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14291
(538 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 501 5.6e-72 3
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 575 4.0e-65 2
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 518 5.4e-58 2
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 515 6.4e-58 2
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 516 5.7e-57 2
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 514 1.1e-56 2
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 511 4.9e-56 2
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 488 4.6e-53 2
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 516 1.7e-51 2
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 514 3.3e-51 2
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 467 1.5e-49 3
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 436 9.4e-48 3
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 469 1.9e-46 2
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 444 2.8e-46 2
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 433 4.3e-46 3
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 433 4.3e-46 3
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 342 5.8e-45 3
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 320 3.0e-34 3
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 320 3.0e-34 3
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 262 3.8e-26 3
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 221 8.5e-24 2
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 240 1.2e-20 3
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 241 1.4e-20 3
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 239 1.0e-19 3
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 235 9.9e-19 3
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 241 1.3e-18 3
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 230 1.7e-18 1
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 242 2.0e-18 2
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 226 5.3e-18 3
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 203 7.6e-18 2
WB|WBGene00020442 - symbol:gen-1 species:6239 "Caenorhabd... 209 1.1e-15 2
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 173 2.8e-14 2
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 180 1.5e-13 2
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 203 1.5e-13 1
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 180 3.9e-13 2
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 171 4.9e-13 3
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 195 1.2e-12 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 173 1.3e-12 2
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 181 1.5e-12 2
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 190 4.6e-12 1
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 189 6.7e-12 1
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 175 8.3e-12 2
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 187 1.0e-11 1
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 188 1.2e-11 1
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 186 1.3e-11 1
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 185 1.7e-11 1
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 184 2.1e-11 1
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 165 4.4e-11 3
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 181 4.8e-11 1
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 181 4.9e-11 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 179 8.0e-11 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 179 8.2e-11 1
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 175 2.3e-10 1
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 170 9.1e-10 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 135 1.9e-09 3
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 168 4.1e-09 1
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 168 4.1e-09 1
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 164 5.8e-09 2
UNIPROTKB|G4MVT4 - symbol:MGG_01800 "Flap structure-speci... 175 7.7e-09 2
SGD|S000002671 - symbol:DIN7 "Mitochondrial nuclease func... 162 8.6e-09 1
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 162 8.8e-09 2
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 145 2.8e-07 2
UNIPROTKB|G4NE19 - symbol:MGG_00841 "Exonuclease 1" speci... 148 5.0e-07 2
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 142 8.3e-07 2
ASPGD|ASPL0000035217 - symbol:AN3186 species:162425 "Emer... 148 8.3e-07 1
GENEDB_PFALCIPARUM|PF10_0080 - symbol:PF10_0080 "endonucl... 139 2.5e-06 1
UNIPROTKB|Q8IJW1 - symbol:PF10_0080 "Endonuclease, putati... 139 2.5e-06 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 136 7.4e-06 2
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 135 7.5e-06 2
ASPGD|ASPL0000033989 - symbol:AN3035 species:162425 "Emer... 134 2.5e-05 2
POMBASE|SPAC12G12.16c - symbol:SPAC12G12.16c "Fen1 family... 130 3.7e-05 1
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 125 5.5e-05 2
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 126 5.6e-05 2
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 125 7.0e-05 2
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 124 7.1e-05 2
DICTYBASE|DDB_G0291570 - symbol:exo1 "5'3'-exonuclease N-... 133 8.6e-05 2
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 129 0.00012 2
UNIPROTKB|I3LHP7 - symbol:I3LHP7 "Uncharacterized protein... 110 0.00015 1
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 128 0.00016 2
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 125 0.00023 1
RGD|1586176 - symbol:Ercc5 "excision repair cross-complem... 115 0.00041 1
TAIR|locus:2194085 - symbol:AT1G18090 species:3702 "Arabi... 119 0.00074 1
UNIPROTKB|Q5T398 - symbol:EXO1 "Exonuclease 1" species:96... 92 0.00097 2
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 501 (181.4 bits), Expect = 5.6e-72, Sum P(3) = 5.6e-72
Identities = 105/226 (46%), Positives = 151/226 (66%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E+QELL+LFGVPFIVAP EAEAQCA+L+ + T G ITDDSDIWLFG R VY+NFF++
Sbjct: 661 ESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDDSDIWLFGGRHVYRNFFNQNK 720
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y D++ L R KLI LA L+GSDYT G+ GVG VT +EIL +F P
Sbjct: 721 YVEHYQIVDMQNQLGLDRSKLINLAYLLGSDYTEGIPGVGYVTGMEILNEF-----PGAG 775
Query: 442 YIVESMRRFKNWL--AKKNK-----P-DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
+E + + W A++NK P DT + +KLRN++++ FPN +V +AYL+P ++
Sbjct: 776 --LEPLVQLSEWWTEAQENKKLSVNPKDTKVKKKLRNLQIHPGFPNPAVAQAYLQPSVDQ 833
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKI-SQRS 538
+ +WG P LD ++ F ++FGWS + ++TL P++K++ SQ++
Sbjct: 834 SDASFSWGRPHLDLIKEFCQSRFGWSSRKTEETLQPVLKQLQSQQT 879
Score = 166 (63.5 bits), Expect = 5.6e-72, Sum P(3) = 5.6e-72
Identities = 44/106 (41%), Positives = 66/106 (62%)
Query: 206 EQQKILDSLVKKKAKSDDVI-DVDLTETSTSGFFDYG-CDVIKSSTLEK---DRDQLLLE 260
E+++ ++ + A+S D I DVD + ++ D + L++ D Q L E
Sbjct: 583 EKEEEVEEEEESSAQSTDQIEDVDESVNEAPAVSEWEHIDTEELQLLDRELQDEQQTLRE 642
Query: 261 RGKQT-RLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLE 305
+ +Q R +ST+T QM +E+QELL+LFGVPFIVAP EAEAQCA+L+
Sbjct: 643 QHQQQQRSSSTVTGQMCQESQELLRLFGVPFIVAPMEAEAQCAALD 688
Score = 120 (47.3 bits), Expect = 5.6e-72, Sum P(3) = 5.6e-72
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV+GLWKLLE++GKP+ ETLE K+LAV I + + DR
Sbjct: 1 MGVHGLWKLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDR 45
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 575 (207.5 bits), Expect = 4.0e-65, Sum P(2) = 4.0e-65
Identities = 117/236 (49%), Positives = 163/236 (69%)
Query: 316 VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
+S++M ++ QELL+LFG+P+IVAP EAEAQCA L + T G ITDDSDIWLFG RTVYK
Sbjct: 876 ISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYK 935
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
NFF + HV+ + A I F R KLIQLA LVGSDYT G+ G+G VTALEILA FS
Sbjct: 936 NFFAQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSG 995
Query: 435 SDS--P---NQNYIVESMRRFKNWL-AKK--NKPDTH-----LTRKLRNVKLNDDFPNVS 481
D+ P NQ+ +++++ +F++W A K N P L +KL+N++L++ FP+ +
Sbjct: 996 QDANGPGICNQS-VLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGA 1054
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V+EAYL P I+ N +WGTPD++ +R F FGW+ ++ D L+P+MKKI+++
Sbjct: 1055 VVEAYLAPTIDDNRDAFSWGTPDVESIREFTRKSFGWTTSKTDDILMPVMKKINEK 1110
Score = 160 (61.4 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 247 SSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 306
++ L ++R +L +ER +Q R+ +I+++MS + QELL+LFG+P+IVAP EAEAQCA L
Sbjct: 852 ATNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLN- 910
Query: 307 GTD 309
TD
Sbjct: 911 ATD 913
Score = 128 (50.1 bits), Expect = 4.0e-65, Sum P(2) = 4.0e-65
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVG 139
MGV GLWKL+E GKPVPVETLE K+LAVG
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVG 30
Score = 93 (37.8 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 33 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVLGKN-EMAL------PPPSVSR-EVD 84
A+R+ ++K ++ AD++++ LGKN E+ L PPP+ E D
Sbjct: 110 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 169
Query: 85 MFELPPAPAQTVQDEEEDT 103
+F+LP PA +VQD ++++
Sbjct: 170 LFKLPELPAASVQDNQDES 188
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 518 (187.4 bits), Expect = 5.4e-58, Sum P(2) = 5.4e-58
Identities = 133/335 (39%), Positives = 191/335 (57%)
Query: 225 IDVDLTETSTSGFFDYGCDVI---KS--STLEKD-RD---QLLLERGKQTRLASTIT--- 272
I+VD T S F CD K+ S +E+D RD Q LL + +LA +
Sbjct: 607 IEVD-TVISNEDEFSTECDERLGDKTALSEMEEDGRDIVTQNLLNESDEVQLADSQNAEK 665
Query: 273 EQMSREAQELLQLFGVPFIVA-PGEAEAQCASLELGTDKKRRPYVS---RKMLEAQELLQ 328
E S++A+ Q + + + A+ L+ ++ R S + LE+QELL+
Sbjct: 666 EDNSKDAENEWQDISLEELEELENDLSAEQEMLQSQKQQQERVATSVTGQMFLESQELLR 725
Query: 329 LFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTA 388
LFG+P+I AP EAEAQCA L+L + T G ITDDSD+WLFGAR VYKNFF + +V Y
Sbjct: 726 LFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFSRNKYVEYYQY 785
Query: 389 PDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMR 448
D + L R KLI LA L+GSDYT G+ VG VTA+EIL +F P +E +
Sbjct: 786 IDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNEF-----PGHG--LEPLL 838
Query: 449 RFKNWL--AKKNK---P---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
+F W A+KNK P DT + +KLR ++L+ FPN +V EAYLKP ++ W
Sbjct: 839 KFAEWWNEAQKNKKIRPNPRDTKVKKKLRELQLSSGFPNPAVAEAYLKPVVDETRGSFIW 898
Query: 501 GTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
G PD++ +R F + FGW++ + D+ L+P++K+++
Sbjct: 899 GKPDVEQIREFCKDHFGWTRTKTDEILLPVIKQLN 933
Score = 116 (45.9 bits), Expect = 5.4e-58, Sum P(2) = 5.4e-58
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLWKLLE +G+PV ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDR 45
Score = 55 (24.4 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 255 DQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCAS-----LELGTD 309
++ +++ + R S + + EA E+ + V GE+ + C+ E+G+
Sbjct: 951 EKQVIKSQRLRRAVSCLKRKEKEEADEISEATAVMEKEMKGESTSGCSDHQAMVTEIGSG 1010
Query: 310 KKRRPYVSRK 319
KKRR SRK
Sbjct: 1011 KKRRHSDSRK 1020
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 515 (186.3 bits), Expect = 6.4e-58, Sum P(2) = 6.4e-58
Identities = 126/342 (36%), Positives = 191/342 (55%)
Query: 211 LDSLVKKKAKSDDVIDVDLTE-TSTSGFFDYGCDVIKSSTL-EKDRDQLL----LERGKQ 264
+D+++ + + D L + T+ S + G D++ + L E D QL E+
Sbjct: 668 VDTVISNEDEFSTECDERLGDKTALSEMEEDGRDIVTQNLLNESDEVQLADSQNAEKEDN 727
Query: 265 TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVS---RKML 321
++ A + +S ++ F + A+ L+ ++ R S + L
Sbjct: 728 SKDAENEWQDISLQSALSQNTFQEELEELENDLSAEQEMLQSQKQQQERVATSVTGQMFL 787
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSD+WLFGAR VYKNFF +
Sbjct: 788 ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFSRNK 847
Query: 382 HVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQN 441
+V Y D + L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 848 YVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNEF-----PGHG 902
Query: 442 YIVESMRRFKNWL--AKKNK---P---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
+E + +F W A+KNK P DT + +KLR ++L+ FPN +V EAYLKP ++
Sbjct: 903 --LEPLLKFAEWWNEAQKNKKIRPNPRDTKVKKKLRELQLSSGFPNPAVAEAYLKPVVDE 960
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
WG PD++ +R + N FGW++ + D+ L+P++K+++
Sbjct: 961 TRGSFIWGKPDVEQIREYPFNHFGWTRTKTDEILLPVIKQLN 1002
Score = 116 (45.9 bits), Expect = 6.4e-58, Sum P(2) = 6.4e-58
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLWKLLE +G+PV ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDR 45
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 516 (186.7 bits), Expect = 5.7e-57, Sum P(2) = 5.7e-57
Identities = 109/223 (48%), Positives = 145/223 (65%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 786 LESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNKN 845
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 846 KFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PGH 900
Query: 441 NYIVESMRRFKNWL--AKKNK---P---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
+E +R+F W A++NK P DT + +KLR ++L FPN +V +AYLKP ++
Sbjct: 901 G--LEPLRKFSEWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVVD 958
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 959 ESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 1001
Score = 154 (59.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 37/82 (45%), Positives = 55/82 (67%)
Query: 231 ETSTSGFFDYGCDVIKS--STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGV 288
E S + D D +++ S L ++ L ++ +Q R+A+T+T QM E+QELL+LFG+
Sbjct: 738 EDSLHEWQDIDLDELEALESNLLTQQNTLKAQKQQQERVAATVTGQMFLESQELLRLFGI 797
Query: 289 PFIVAPGEAEAQCASLELGTDK 310
P+I AP EAEAQCA L+L TD+
Sbjct: 798 PYIEAPMEAEAQCAILDL-TDQ 818
Score = 110 (43.8 bits), Expect = 5.7e-57, Sum P(2) = 5.7e-57
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLWKLLE SG+ + ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDR 45
Score = 63 (27.2 bits), Expect = 5.0e-52, Sum P(2) = 5.0e-52
Identities = 24/76 (31%), Positives = 31/76 (40%)
Query: 33 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 90
A+R+ K AAS++ L K E ALP V RE D++ LPP
Sbjct: 89 AKRRHKKDLAASDSKTTTEKLLKTFLKRQVIKTALKSKREEALPSLTQVQREDDIYALPP 148
Query: 91 APAQTVQD-EEEDTLE 105
+ EEED E
Sbjct: 149 LQEKEKNSSEEEDEKE 164
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 514 (186.0 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 116/248 (46%), Positives = 156/248 (62%)
Query: 299 AQCASLELGTDKKRRPY--VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
AQ SL+ ++ R V+ +M LE+QELL+LFG+P+I AP EAEAQCA L+L + T
Sbjct: 746 AQQHSLKAQQQQQERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTS 805
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G ITDDSDIWLFGAR VYKNFF+K V Y D L R KLI LA L+GSDYT
Sbjct: 806 GTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTE 865
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL--AKKNK---P---DTHLTRK 467
G+ VG VTA+EIL +F P +E + +F W A+KNK P DT + +K
Sbjct: 866 GIPTVGCVTAMEILNEF-----PGHG--LEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKK 918
Query: 468 LRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
LR ++L FPN +V +AYLKP ++ + WG PDLD +R F FGW++ + D++L
Sbjct: 919 LRKLQLTPGFPNPAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESL 978
Query: 528 IPIMKKIS 535
P++K+++
Sbjct: 979 FPVLKQLN 986
Score = 149 (57.5 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 249 TLEKD----RDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
TLE D + L ++ +Q R A+T+T QM E+QELL+LFG+P+I AP EAEAQCA L
Sbjct: 739 TLENDLLAQQHSLKAQQQQQERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAIL 798
Query: 305 ELGTDK 310
+L TD+
Sbjct: 799 DL-TDQ 803
Score = 109 (43.4 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV+GLWKLLE SG+ V ETLE K+LAV I
Sbjct: 1 MGVHGLWKLLECSGRQVSPETLEGKILAVDI 31
Score = 62 (26.9 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 33 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 90
A+R+ K AA+++ K L K + ALP V RE D++ LPP
Sbjct: 89 AKRRHRKDLAATDSRKTTEKLLKTFLKRQAIKTALKSKRDEALPSLTQVRREDDIYVLPP 148
Query: 91 APAQTVQD-EEEDTLE 105
+ EEED E
Sbjct: 149 LQKEEKNSSEEEDERE 164
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 511 (184.9 bits), Expect = 4.9e-56, Sum P(2) = 4.9e-56
Identities = 115/247 (46%), Positives = 155/247 (62%)
Query: 299 AQCASLELGTDKKRR--PYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
AQ SL+ ++ R V+ +M LE+QELL+LFG+P+I AP EAEAQCA L+L + T
Sbjct: 745 AQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTS 804
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G ITDDSDIWLFGAR VY+NFF+K V Y D L R KLI LA L+GSDYT
Sbjct: 805 GTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTE 864
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL--AKKN---KP---DTHLTRK 467
G+ VG VTA+EIL +F P +E + +F W A+KN +P DT + +K
Sbjct: 865 GIPTVGCVTAMEILNEF-----PGHG--LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKK 917
Query: 468 LRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
LR ++L FPN +V EAYLKP ++ + WG PDLD +R F FGW++ + D++L
Sbjct: 918 LRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESL 977
Query: 528 IPIMKKI 534
P++K++
Sbjct: 978 FPVLKQL 984
Score = 159 (61.0 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 42/107 (39%), Positives = 67/107 (62%)
Query: 212 DSLVKKKAKSDDV------IDVDLTETSTSGFFDYGCDVIKS--STLEKDRDQLLLERGK 263
+SL++ ++ DDV + D E S + D + +++ S L ++ L ++ +
Sbjct: 698 ESLLRDNSERDDVDGEPQEAEKD-AEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQ 756
Query: 264 QTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDK 310
Q R+A+T+T QM E+QELL+LFG+P+I AP EAEAQCA L+L TD+
Sbjct: 757 QERIAATVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDL-TDQ 802
Score = 106 (42.4 bits), Expect = 4.9e-56, Sum P(2) = 4.9e-56
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLWKLLE SG+ V E LE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDR 45
Score = 56 (24.8 bits), Expect = 8.9e-51, Sum P(2) = 8.9e-51
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 69 KNEMALPP-PSVSREVDMFELPPAPAQTVQD-EEEDTLE 105
K + ALP V RE D++ LPP + EEED E
Sbjct: 126 KRDEALPSLTQVRRENDLYVLPPLQEEEKHSSEEEDEKE 164
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 488 (176.8 bits), Expect = 4.6e-53, Sum P(2) = 4.6e-53
Identities = 106/235 (45%), Positives = 145/235 (61%)
Query: 309 DKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
D+ + LE+QELL+LFGVP+I AP EAEAQCA L+L + T G ITDDSDIWLFG
Sbjct: 757 DRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFG 816
Query: 369 ARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
AR VYKNFF+K V Y D L R KLI LA L+GSDYT G+ VG VTA+EI
Sbjct: 817 ARHVYKNFFNKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI 876
Query: 429 LAKFSPSDSPNQNYIVESMRRFKNWL--AKKNK-----P-DTHLTRKLRNVKLNDDFPNV 480
L +F P + ++ + +F W A+ NK P DT + +KLR ++L FPN
Sbjct: 877 LNEF-----PGRG--LDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNP 929
Query: 481 SVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+V +AYL+P ++ + WG PD+D + F FGW++ + D++L P++K ++
Sbjct: 930 AVADAYLRPVVDDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYPVLKHLN 984
Score = 157 (60.3 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 34/68 (50%), Positives = 52/68 (76%)
Query: 243 DVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCA 302
D ++S+ L +++ L ++ +Q R+A+++T QM E+QELL+LFGVP+I AP EAEAQCA
Sbjct: 736 DALESNLLA-EQNSLKAQKQQQDRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCA 794
Query: 303 SLELGTDK 310
L+L TD+
Sbjct: 795 MLDL-TDQ 801
Score = 101 (40.6 bits), Expect = 4.6e-53, Sum P(2) = 4.6e-53
Identities = 25/53 (47%), Positives = 29/53 (54%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNIID 162
MGV GLWKLLE SG V E LE KVLAV I + + D N+I+
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRD--SHGNVIE 51
Score = 56 (24.8 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 33 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVLGKNEMALPPP--SVSREVDMFELPP 90
A+R+ K A+ ++ K + PP V R+ D++ LPP
Sbjct: 89 AKRRQRKDSASIDSRKTTEKLLKTFLKRQALKTAFRSSRHEAPPSLTQVQRQDDIYVLPP 148
Query: 91 APAQTVQDEEED 102
P + EE+
Sbjct: 149 LPEEEKHSSEEE 160
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 516 (186.7 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 109/223 (48%), Positives = 145/223 (65%)
Query: 321 LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK 380
LE+QELL+LFG+P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K
Sbjct: 1200 LESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNKN 1259
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
V Y D L R KLI LA L+GSDYT G+ VG VTA+EIL +F P
Sbjct: 1260 KFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEF-----PGH 1314
Query: 441 NYIVESMRRFKNWL--AKKNK---P---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDIN 492
+E +R+F W A++NK P DT + +KLR ++L FPN +V +AYLKP ++
Sbjct: 1315 G--LEPLRKFSEWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVVD 1372
Query: 493 TNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKIS 535
+ WG PDLD +R F FGW++ + D++L P++K+++
Sbjct: 1373 ESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLN 1415
Score = 154 (59.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 37/82 (45%), Positives = 55/82 (67%)
Query: 231 ETSTSGFFDYGCDVIKS--STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGV 288
E S + D D +++ S L ++ L ++ +Q R+A+T+T QM E+QELL+LFG+
Sbjct: 1152 EDSLHEWQDIDLDELEALESNLLTQQNTLKAQKQQQERVAATVTGQMFLESQELLRLFGI 1211
Query: 289 PFIVAPGEAEAQCASLELGTDK 310
P+I AP EAEAQCA L+L TD+
Sbjct: 1212 PYIEAPMEAEAQCAILDL-TDQ 1232
Score = 63 (27.2 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 24/76 (31%), Positives = 31/76 (40%)
Query: 33 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 90
A+R+ K AAS++ L K E ALP V RE D++ LPP
Sbjct: 513 AKRRHKKDLAASDSKTTTEKLLKTFLKRQVIKTALKSKREEALPSLTQVQREDDIYALPP 572
Query: 91 APAQTVQD-EEEDTLE 105
+ EEED E
Sbjct: 573 LQEKEKNSSEEEDEKE 588
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 514 (186.0 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 116/248 (46%), Positives = 156/248 (62%)
Query: 299 AQCASLELGTDKKRRPY--VSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
AQ SL+ ++ R V+ +M LE+QELL+LFG+P+I AP EAEAQCA L+L + T
Sbjct: 1161 AQQHSLKAQQQQQERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTS 1220
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G ITDDSDIWLFGAR VYKNFF+K V Y D L R KLI LA L+GSDYT
Sbjct: 1221 GTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTE 1280
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL--AKKNK---P---DTHLTRK 467
G+ VG VTA+EIL +F P +E + +F W A+KNK P DT + +K
Sbjct: 1281 GIPTVGCVTAMEILNEF-----PGHG--LEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKK 1333
Query: 468 LRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
LR ++L FPN +V +AYLKP ++ + WG PDLD +R F FGW++ + D++L
Sbjct: 1334 LRKLQLTPGFPNPAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESL 1393
Query: 528 IPIMKKIS 535
P++K+++
Sbjct: 1394 FPVLKQLN 1401
Score = 149 (57.5 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 249 TLEKD----RDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
TLE D + L ++ +Q R A+T+T QM E+QELL+LFG+P+I AP EAEAQCA L
Sbjct: 1154 TLENDLLAQQHSLKAQQQQQERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAIL 1213
Query: 305 ELGTDK 310
+L TD+
Sbjct: 1214 DL-TDQ 1218
Score = 62 (26.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 33 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 90
A+R+ K AA+++ K L K + ALP V RE D++ LPP
Sbjct: 514 AKRRHRKDLAATDSRKTTEKLLKTFLKRQAIKTALKSKRDEALPSLTQVRREDDIYVLPP 573
Query: 91 APAQTVQD-EEEDTLE 105
+ EEED E
Sbjct: 574 LQKEEKNSSEEEDERE 589
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 467 (169.5 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 97/232 (41%), Positives = 145/232 (62%)
Query: 309 DKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
DK+ V+ M+ E QELL FG+P+I AP EAEAQCA L N G+ITDDSD++LF
Sbjct: 760 DKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLF 819
Query: 368 GARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALE 427
G +YKN F +K++V Y A I L R+ +I+LA L+GSDYT GL+G+GPV+++E
Sbjct: 820 GGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIE 879
Query: 428 ILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRN--VKLNDDFPNVSVIEA 485
++A+F + Y + K +NK + L +KL N + L+DDFP+V V +A
Sbjct: 880 VIAEFGNLKNFKDWYNNGQFDKRKQ--ETENKFEKDLRKKLVNNEIILDDDFPSVMVYDA 937
Query: 486 YLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
Y++P+++ + WG PDLD LR F + GW + D+ LIP+++ +++R
Sbjct: 938 YMRPEVDHDTTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVNKR 989
Score = 131 (51.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 34/99 (34%), Positives = 58/99 (58%)
Query: 206 EQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCDVIKSSTLEKDRDQLLLERGKQT 265
E+ I+++++K++ + D + L+ TS +V +++ +E D+L ++ K
Sbjct: 712 EEDNIVENMIKEQEEFDTFKNTTLS-TSAER------NVAENAFVE---DELFEQQMKDK 761
Query: 266 RLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
R + +T M +E QELL FG+P+I AP EAEAQCA L
Sbjct: 762 RDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAEL 800
Score = 65 (27.9 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV+ W + + +PV +E+LE+K +AV
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAV 29
Score = 43 (20.2 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 238 FDYGCDVIKSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQ 280
FD G V+K T+ + +++ +GK+ ST + ++ + Q
Sbjct: 76 FDGGVPVLKRETIRQRKER---RQGKRESAKSTARKLLALQLQ 115
Score = 41 (19.5 bits), Expect = 4.7e-47, Sum P(3) = 4.7e-47
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 94 QTVQDEEEDTLENIYIMGV-NGLWKLLEASGKPV 126
+ V+D+E + ++N +I G + KLL +PV
Sbjct: 40 KAVRDQEGNAVKNSHITGFFRRICKLLYFGIRPV 73
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 436 (158.5 bits), Expect = 9.4e-48, Sum P(3) = 9.4e-48
Identities = 97/236 (41%), Positives = 146/236 (61%)
Query: 308 TDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASL-ELGNHTQGVITDDSDIW 365
++K+ V++ M+ E QELL+LFG+P+IVAP EAEAQC+ L EL G++TDDSD++
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLEL-KLVDGIVTDDSDVF 802
Query: 366 LFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
LFG VY+N F++ V Y D++ F + + LI+LA L+GSDYT GL VGPV A
Sbjct: 803 LFGGTRVYRNMFNQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLA 862
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRN----VKLNDDFPNVS 481
LEIL +F P D+ + + +R A KN +T + +++ + L +FPN
Sbjct: 863 LEILHEF-PGDTGLFEF-KKWFQRLSTGHASKNDVNTPVKKRINKLVGKIILPSEFPNPL 920
Query: 482 VIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
V EAYL P ++ + Q WG PDLD LR+F GWS+ R ++ L+P+++ + ++
Sbjct: 921 VDEAYLHPAVDDSKQSFQWGIPDLDELRQFLMATVGWSKQRTNEVLLPVIQDMHKK 976
Score = 131 (51.2 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 251 EKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
EK +L ++ + R A +T+ M +E QELL+LFG+P+IVAP EAEAQC+ L
Sbjct: 732 EKRLKELKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKL 785
Score = 87 (35.7 bits), Expect = 9.4e-48, Sum P(3) = 9.4e-48
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDN 159
MGV+GLW +LE +PV +ETL NK LA+ + A+ D KE N
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRD--KEGN 48
Score = 38 (18.4 bits), Expect = 9.4e-48, Sum P(3) = 9.4e-48
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 238 FDYGCDVIKSSTLEKDRDQLLLERGKQTRLAST--ITEQMSREAQEL 282
FD G +K T++K R L+R + + + + QM +A L
Sbjct: 76 FDGGAPSLKRQTIQK-RQARRLDREENATVTANKLLALQMRHQAMLL 121
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 469 (170.2 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 113/248 (45%), Positives = 152/248 (61%)
Query: 299 AQCASLELGTDKKRR--PYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
AQ SL+ ++ R V+ +M LE+QELL+LFGVP+I AP EAEAQCA L+L + T
Sbjct: 1133 AQQHSLKAQKQQQERVAATVTGQMFLESQELLRLFGVPYIEAPMEAEAQCAILDLSDQTS 1192
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
G ITDDSDIWLFGAR VYKNFF+K V Y D L R KLI LA L+GSDYT
Sbjct: 1193 GTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFHSQLGLDRNKLINLAYLLGSDYTE 1252
Query: 416 GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWL--AKKN---KP---DTHLTRK 467
G+ VG VTA+EIL +F P +E + +F W A+KN +P DT + +K
Sbjct: 1253 GIPTVGCVTAMEILNEF-----PGHG--LEPLLKFSEWWHEAQKNQKLRPNPYDTKVKKK 1305
Query: 468 LRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
LR ++L P AYL+P ++ + WGTPDLD +R F FGW++ + D++L
Sbjct: 1306 LRKLQLA---PX-----AYLRPVVDDSRGAFLWGTPDLDKIREFCQRYFGWNRTKTDESL 1357
Query: 528 IPIMKKIS 535
P++K+++
Sbjct: 1358 FPVLKQLN 1365
Score = 150 (57.9 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 243 DVIKSSTLEKD----RDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAE 298
D+ + ++LE D + L ++ +Q R+A+T+T QM E+QELL+LFGVP+I AP EAE
Sbjct: 1120 DLEELASLESDLLAQQHSLKAQKQQQERVAATVTGQMFLESQELLRLFGVPYIEAPMEAE 1179
Query: 299 AQCASLEL 306
AQCA L+L
Sbjct: 1180 AQCAILDL 1187
Score = 62 (26.9 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 23/76 (30%), Positives = 30/76 (39%)
Query: 33 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 90
A+R+ K A ++ K L K E ALP V RE D++ LPP
Sbjct: 519 AKRRQRKDLATDDSKKTTEKLLKTFLKRQVVKTALKSKREEALPSLTQVQRENDIYALPP 578
Query: 91 APAQTVQD-EEEDTLE 105
+ EEED E
Sbjct: 579 LEEKEKNSSEEEDEKE 594
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 444 (161.4 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 111/286 (38%), Positives = 154/286 (53%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAP---G--EAEAQCASLELGTDKKRRPY--VSRKML-E 322
+ Q++ E +E ++ F AP G + E + L K RR V++ M+ E
Sbjct: 753 LMRQLAAEGEEHVR-FAATLNSAPHSEGTFDYEQELKQLRSQQKKDRRDADEVTQIMITE 811
Query: 323 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSH 382
Q+LL+LFG+P+I AP EAEAQCA L G+ITDDSDI+LFG VYKN F++ +
Sbjct: 812 CQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMFNQSKY 871
Query: 383 VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNY 442
V Y D+ + L R KLI A L+GSDYT G+ G+GPVTALEIL +FS
Sbjct: 872 VECYLTADLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALEILTEFS--------- 922
Query: 443 IVESMRRFKNWLAK-------KNKPDTHLTRKLRN----VKLNDDFPNVSVIEAYLKPDI 491
S+ F++W + N +K R + L FP+ V AYL+P+
Sbjct: 923 ---SLEEFRDWWTQVQTGADMSNSSHAAFYKKFRKQATKIFLPPTFPDARVDAAYLEPEA 979
Query: 492 NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQR 537
+ + WG PDL GLR F GWSQ R D+ L+P+++ I+QR
Sbjct: 980 DRDPSPFQWGVPDLHGLRNFLMATIGWSQERTDEVLVPVIRDINQR 1025
Score = 129 (50.5 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 251 EKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL-ELG 307
E++ QL ++ K R A +T+ M E Q+LL+LFG+P+I AP EAEAQCA L LG
Sbjct: 784 EQELKQLRSQQKKDRRDADEVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLG 841
Score = 81 (33.6 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDRRKEDNII 161
MGV GLW +++ +PV +ETL K LAV + A+ D KE N +
Sbjct: 1 MGVQGLWTIVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRD--KEGNAL 50
Score = 47 (21.6 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 94 QTVQDEEEDTLENIYIMGV-NGLWKLLEASGKPV 126
+ V+D+E + L N +I+G + KLL KPV
Sbjct: 40 KAVRDKEGNALRNSHIVGFFRRICKLLYFGIKPV 73
Score = 47 (21.6 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 72 MALPPPS-VSREVDMFELPPAPAQTVQDEE----EDTLEN---IYIMGVNGLWKLLEASG 123
M+L P+ + + +M E+P A +++ + E T+E+ + + K +A
Sbjct: 431 MSLQSPNHMDHDAEMPEIPVNRATSLEPQSKPAVEPTIESDDELDFVAAVAQSKRTKAPA 490
Query: 124 KPVPVETLE 132
KP P +T E
Sbjct: 491 KPAPTQTFE 499
Score = 43 (20.2 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 82 EVDMF---ELPPAPAQTVQDEEEDTLENIYIMGVNGLWKL 118
+VD + E+ P P + E+E E++ I G+N L KL
Sbjct: 334 DVDRYFHHEITPEPEAS---EDEGGFEDVPIEGLNRLPKL 370
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 433 (157.5 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 96/241 (39%), Positives = 144/241 (59%)
Query: 310 KKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
K+ V+ M+ + QELL+ FG+P+I AP EAEAQCA L G++TDDSD +LFG
Sbjct: 719 KRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCFLFG 778
Query: 369 ARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
+YKN FD+K +V Y D+ LT+ KLI+LALL+GSDYT G++G+GPV A+EI
Sbjct: 779 GDKIYKNMFDQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEI 838
Query: 429 LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKP--D-THLTRK----LRNVK-----LNDD 476
LA+F ++ +FK W K K D T LT+ L +K L D
Sbjct: 839 LAEFG------------NLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDS 886
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V +AY+ P+++++ + WG PDLD +R F W+Q VD+ ++P+++ +++
Sbjct: 887 FPDKVVEQAYMSPEVDSDKTEFQWGVPDLDQIRSFLMYNLLWTQTEVDEVMVPLVQDMNK 946
Query: 537 R 537
+
Sbjct: 947 K 947
Score = 124 (48.7 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 255 DQLLLER-GKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
+QLL E+ K R + +TE M + QELL+ FG+P+I AP EAEAQCA L
Sbjct: 708 EQLLQEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAEL 758
Score = 72 (30.4 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV+ LWK++ + +PV +E L K LA+
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAI 29
Score = 38 (18.4 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 82 EVDMFELPPAPAQTVQDEEED 102
++D FEL Q +++E+ D
Sbjct: 413 KIDYFELQAKETQQLEEEKFD 433
Score = 37 (18.1 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 154 RRKEDNIIDAEEKD 167
R KE+ I + EE D
Sbjct: 510 RTKEETIFEPEESD 523
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 433 (157.5 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 96/241 (39%), Positives = 144/241 (59%)
Query: 310 KKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
K+ V+ M+ + QELL+ FG+P+I AP EAEAQCA L G++TDDSD +LFG
Sbjct: 719 KRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCFLFG 778
Query: 369 ARTVYKNFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
+YKN FD+K +V Y D+ LT+ KLI+LALL+GSDYT G++G+GPV A+EI
Sbjct: 779 GDKIYKNMFDQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIGPVQAMEI 838
Query: 429 LAKFSPSDSPNQNYIVESMRRFKNWLAKKNKP--D-THLTRK----LRNVK-----LNDD 476
LA+F ++ +FK W K K D T LT+ L +K L D
Sbjct: 839 LAEFG------------NLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDS 886
Query: 477 FPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQ 536
FP+ V +AY+ P+++++ + WG PDLD +R F W+Q VD+ ++P+++ +++
Sbjct: 887 FPDKVVEQAYMSPEVDSDKTEFQWGVPDLDQIRSFLMYNLLWTQTEVDEVMVPLVQDMNK 946
Query: 537 R 537
+
Sbjct: 947 K 947
Score = 124 (48.7 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 255 DQLLLER-GKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
+QLL E+ K R + +TE M + QELL+ FG+P+I AP EAEAQCA L
Sbjct: 708 EQLLQEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAEL 758
Score = 72 (30.4 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV+ LWK++ + +PV +E L K LA+
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAI 29
Score = 38 (18.4 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 82 EVDMFELPPAPAQTVQDEEED 102
++D FEL Q +++E+ D
Sbjct: 413 KIDYFELQAKETQQLEEEKFD 433
Score = 37 (18.1 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 154 RRKEDNIIDAEEKD 167
R KE+ I + EE D
Sbjct: 510 RTKEETIFEPEESD 523
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 342 (125.4 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 69/153 (45%), Positives = 100/153 (65%)
Query: 316 VSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK 374
VS +M E QELLQ+FG+P+I+AP EAEAQCA +E N G++TDDSD++LFGAR+VYK
Sbjct: 921 VSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYK 980
Query: 375 NFFDKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSP 434
N FD + +V Y DI L+R+K+I++A+L+GSDYT G+ G+G V A+E++ F
Sbjct: 981 NIFDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPE 1040
Query: 435 SDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRK 467
D +++F+ W+ PD + K
Sbjct: 1041 EDG---------LQKFREWV---ESPDPTILGK 1061
Score = 155 (59.6 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 461 DTHLTRKL-RNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWS 519
D H RK+ +N + FP+ +VI AYL P ++ + +K +WG PDL LR+ KF W+
Sbjct: 1101 DQH--RKVSKNWHIPLTFPSEAVISAYLNPQVDLSTEKFSWGKPDLSVLRKLCWEKFNWN 1158
Query: 520 QNRVDQTLIPIMKKISQR 537
+ D+ L+P++K+ +R
Sbjct: 1159 GKKTDELLLPVLKEYEKR 1176
Score = 132 (51.5 bits), Expect = 6.2e-20, Sum P(3) = 6.2e-20
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 260 ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLE 305
E+ K R A +++ +M E QELLQ+FG+P+I+AP EAEAQCA +E
Sbjct: 910 EQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFME 955
Score = 86 (35.3 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGV GLW+LL G+ V VETL NK LA+
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAI 29
Score = 46 (21.3 bits), Expect = 8.5e-41, Sum P(3) = 8.5e-41
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 94 QTVQDEEEDTLENIYIMGV-NGLWKLLEASGKPV 126
+ ++DE+ D ++N +++G + KLL KP+
Sbjct: 40 KAMRDEKGDMVQNAHLIGFFRRICKLLFLRTKPI 73
Score = 37 (18.1 bits), Expect = 7.4e-40, Sum P(3) = 7.4e-40
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 9 SPWTNMSQWRYV 20
SPW + S W V
Sbjct: 564 SPWASDSDWEEV 575
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 320 (117.7 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 75/213 (35%), Positives = 118/213 (55%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL FG+P+I +P EAEAQC+ L N+ +I+DDSD+ +F +TV KNFF+KK V
Sbjct: 1218 LLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKNFFNKKKTVEV 1277
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN--QNYI 443
Y I L +E+LI ++LL G DYT G+ G+G V ALEI+ F + ++ +
Sbjct: 1278 YEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIV 1337
Query: 444 VESMRRF-KNWLAKKNKP--DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
R+ KN ++ + +TH KL + N+ FP+ V + + P + T+++K W
Sbjct: 1338 SNPFRKIDKNMYNEEIQQFLNTHKNYKLNWIFPNN-FPDREVYKCFKYPKVCTDIKKFEW 1396
Query: 501 GTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
PD+ + +F S+ +V L PI++K
Sbjct: 1397 HVPDIKSITKFLHKTTNISEEKVLNVLNPILQK 1429
Score = 116 (45.9 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 30/106 (28%), Positives = 60/106 (56%)
Query: 203 MLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCD--VIKSSTLE--KDRDQLL 258
+L ++++++D+ +++D + D + +F+Y D +I S E K+ ++L+
Sbjct: 1137 ILLDKKQVMDNFQMNIEQNNDKLKED--KLDEGAYFEYLEDNKIIDSYIKETNKENEELI 1194
Query: 259 LERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
E K + I ++M+ + + LL FG+P+I +P EAEAQC+ L
Sbjct: 1195 KEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYL 1240
Score = 54 (24.1 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLW ++ G V E K +A+ +
Sbjct: 1 MGVKGLWSIVSPVGVRVNPEIFTGKRIAIDV 31
Score = 37 (18.1 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 210 ILDSLVKKKAKSDDVIDVDL 229
IL+ + KK K D+++ +L
Sbjct: 942 ILEEIKYKKEKKDELVSPNL 961
Score = 37 (18.1 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 207 QQKILDSLVKKKAKSDDVIDV-DLTET 232
Q+ +L+S+ K K+D+ ++ D T T
Sbjct: 143 QRTLLNSMKSKNKKNDNSNNIEDKTNT 169
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 320 (117.7 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 75/213 (35%), Positives = 118/213 (55%)
Query: 326 LLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLR 385
LL FG+P+I +P EAEAQC+ L N+ +I+DDSD+ +F +TV KNFF+KK V
Sbjct: 1218 LLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKNFFNKKKTVEV 1277
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPN--QNYI 443
Y I L +E+LI ++LL G DYT G+ G+G V ALEI+ F + ++ +
Sbjct: 1278 YEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIV 1337
Query: 444 VESMRRF-KNWLAKKNKP--DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAW 500
R+ KN ++ + +TH KL + N+ FP+ V + + P + T+++K W
Sbjct: 1338 SNPFRKIDKNMYNEEIQQFLNTHKNYKLNWIFPNN-FPDREVYKCFKYPKVCTDIKKFEW 1396
Query: 501 GTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
PD+ + +F S+ +V L PI++K
Sbjct: 1397 HVPDIKSITKFLHKTTNISEEKVLNVLNPILQK 1429
Score = 116 (45.9 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 30/106 (28%), Positives = 60/106 (56%)
Query: 203 MLAEQQKILDSLVKKKAKSDDVIDVDLTETSTSGFFDYGCD--VIKSSTLE--KDRDQLL 258
+L ++++++D+ +++D + D + +F+Y D +I S E K+ ++L+
Sbjct: 1137 ILLDKKQVMDNFQMNIEQNNDKLKED--KLDEGAYFEYLEDNKIIDSYIKETNKENEELI 1194
Query: 259 LERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
E K + I ++M+ + + LL FG+P+I +P EAEAQC+ L
Sbjct: 1195 KEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYL 1240
Score = 54 (24.1 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV GLW ++ G V E K +A+ +
Sbjct: 1 MGVKGLWSIVSPVGVRVNPEIFTGKRIAIDV 31
Score = 37 (18.1 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 210 ILDSLVKKKAKSDDVIDVDL 229
IL+ + KK K D+++ +L
Sbjct: 942 ILEEIKYKKEKKDELVSPNL 961
Score = 37 (18.1 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 207 QQKILDSLVKKKAKSDDVIDV-DLTET 232
Q+ +L+S+ K K+D+ ++ D T T
Sbjct: 143 QRTLLNSMKSKNKKNDNSNNIEDKTNT 169
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 262 (97.3 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 81/226 (35%), Positives = 117/226 (51%)
Query: 243 DVIKSSTLEKDRDQLLLERGKQT---RLASTITEQMSREAQELL---QLFGVPFIV-APG 295
D+I+ S E ++LLE ++ R+AS ++ E +E+ Q + P AP
Sbjct: 389 DMIEVSDDEMVLQEVLLETAAKSLDKRMASLEKHKVPSEDEEIEWDPQRYDKPSTSSAPA 448
Query: 296 EAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
E L + + P + R + QE L G+P+I +PGEAEAQC LE
Sbjct: 449 LME-DYIHLNYSDEDDKTPELYRDL---QEFLTNAGIPWIESPGEAEAQCVELERLGLVD 504
Query: 356 GVITDDSDIWLFGARTVYKNFFDKKSHVLRY----TAP-DIRYYFELTREKLIQLALLVG 410
GV++DDSD+W FGA+ VY++ F K V RY TA D F L RE I +ALL G
Sbjct: 505 GVVSDDSDVWAFGAQHVYRHMFSKNRRVQRYGEQTTANRDNCKLFCLQREDYISIALLSG 564
Query: 411 SDYTPGLQGVGPVTALEILAKFSPS--DSPNQNYIVES--MRRFKN 452
DY GL VG + ALE+++++ D+ N ++E+ MR KN
Sbjct: 565 GDYCAGLVKVGAIGALELVSEYVECRIDNTNDLKVIENRIMRLLKN 610
Score = 86 (35.3 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MG+ GLWK++E + +P+E LE K LA+ +
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDV 31
Score = 64 (27.6 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 479 NVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
N + AYL P ++++ +KL W ++ +RR + W +
Sbjct: 651 NQDAVHAYLHPIVDSSSEKLRWRQMNIPLIRRILHQRLQWPDRK 694
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 221 (82.9 bits), Expect = 8.5e-24, Sum P(2) = 8.5e-24
Identities = 56/141 (39%), Positives = 78/141 (55%)
Query: 302 ASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
AS + G + R + E +LL+ GVP++ A GEAEA CA L H G IT+D
Sbjct: 106 ASNKHGVARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITND 165
Query: 362 SDIWLFGARTVYKNF-FDKKS-----------HVLRYTAPDIRYYFELTREKLIQLALLV 409
D++L+GA+TVY+NF + KS H+ YT I+ RE LI LA+L+
Sbjct: 166 GDVFLYGAQTVYRNFAMNSKSSQKCTWKLKEPHLDCYTMSSIKEKLGCDRESLIGLAVLL 225
Query: 410 GSDYTP-GLQGVGPVTALEIL 429
G DY P G+ GVG AL+++
Sbjct: 226 GCDYLPKGIPGVGKEQALKLI 246
Score = 81 (33.6 bits), Expect = 8.5e-24, Sum P(2) = 8.5e-24
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFT 144
MGVN LW++LE +PV + +L+ K LAV L FT
Sbjct: 1 MGVNNLWQILEPVRQPVSLSSLKGKTLAVD-LRFT 34
Score = 81 (33.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 245 IKSSTLEKDRDQLLLERGKQTRLAST---ITEQMSREAQELLQLFGVPFIVAPGEAEAQC 301
+K+ T+ K R+++ + +A T + + +E +LL+ GVP++ A GEAEA C
Sbjct: 91 LKADTMSK-RNEIRYGASNKHGVARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMC 149
Query: 302 ASL 304
A L
Sbjct: 150 AYL 152
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 240 (89.5 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 53/128 (41%), Positives = 75/128 (58%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKF 432
AL++L F
Sbjct: 222 ALKLLQIF 229
Score = 64 (27.6 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGVN LW++LE + + ++ L K +AV +
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDL 31
Score = 60 (26.2 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 463 HLTRKLRNVKLN----DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGW 518
HL+ N+K + FP VI+ +L + N ++ + + PDL +RF K W
Sbjct: 307 HLSEIENNIKKKACSCEGFPFHEVIQEFLL-NKNKMLKPITYQRPDLLLFQRFTVQKMEW 365
Query: 519 SQNRVDQTLIPIMKK 533
+ + L+ ++ +
Sbjct: 366 PSHYACEKLLVLLTR 380
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 241 (89.9 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 59/166 (35%), Positives = 89/166 (53%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E +L+ G+P++ A GEAEA CA L G H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNW--LAKKNKPDTHLTRKL 468
AL+++ Q+ + +RF W + + P +T+KL
Sbjct: 222 ALKLIQILK-----GQSLL----QRFNRWNETSCNSSPQLLVTKKL 258
Score = 70 (29.7 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGVN LW++LE + +P+ L K +AV +
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDL 31
Score = 52 (23.4 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 18/79 (22%), Positives = 36/79 (45%)
Query: 457 KNKPDTHLTRKLRNVKLN----DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFA 512
+ + D L+ N+K + FP VI+ +L + + V+ + + PDL +RF
Sbjct: 302 RTEHDRQLSEVENNIKKKACCCEGFPFHEVIQEFLL-NKDKLVKVIRYQRPDLLLFQRFT 360
Query: 513 ANKFGWSQNRVDQTLIPIM 531
K W + + L+ ++
Sbjct: 361 LEKMEWPNHYACEKLLVLL 379
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 239 (89.2 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 52/125 (41%), Positives = 74/125 (59%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E E+L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL++L
Sbjct: 222 ALKLL 226
Score = 60 (26.2 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGVN LW++LE + + ++ L K +AV +
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDL 31
Score = 56 (24.8 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
+ FP VI+ +L + N ++ + + PDL +RF K W + + L+ ++ +
Sbjct: 323 EGFPFHEVIQEFLS-NKNKLLKPIRYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTR 380
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 235 (87.8 bits), Expect = 9.9e-19, Sum P(3) = 9.9e-19
Identities = 57/152 (37%), Positives = 82/152 (53%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+
Sbjct: 102 SQKTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEILAKFSPSDSPNQNYIVESMRRFKNWLAK 456
AL+++ K S Q RRF W K
Sbjct: 222 ALKLI-KILKGQSLLQ-------RRFNQWSEK 245
Score = 65 (27.9 bits), Expect = 9.9e-19, Sum P(3) = 9.9e-19
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGVN LW++LE + V + +L K +AV +
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDL 31
Score = 46 (21.3 bits), Expect = 9.9e-19, Sum P(3) = 9.9e-19
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 446 SMRRFKNWLAKKNKPDTHLTRKLRNVKLND-DFPNVSVIEAY----LKPDINTNVQKL 498
S+ + W +K P+ HL + ++ L D +I++Y ++PD+ L
Sbjct: 641 SVNKLSCWDLQKTNPEEHLLSGISDLHLQDLPLKERVLIKSYPQNTVEPDVGLKTLSL 698
Score = 45 (20.9 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
+ FP V + +L + + V+ + + PDL +RF K W + + L+ ++
Sbjct: 325 EGFPFHEVAQEFLL-NKDKLVKAVRYQRPDLLLFQRFTLEKMEWPNHYACEKLLTLL 380
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 241 (89.9 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 51/125 (40%), Positives = 75/125 (60%)
Query: 308 TDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLF 367
+ K R + + E ++L+ G+P++ A GEAEA CA L H G +T+D D +L+
Sbjct: 102 SQKAGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLY 161
Query: 368 GARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVT 424
GA+TVY+NF K HV YTA I+ L R+ L+ LA+L+G DY P G+ GVG
Sbjct: 162 GAQTVYRNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQ 221
Query: 425 ALEIL 429
AL+++
Sbjct: 222 ALKLI 226
Score = 57 (25.1 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGVN LW++LE + + + L K +AV +
Sbjct: 1 MGVNDLWQILEPVKQHIHLHHLCGKTIAVDL 31
Score = 46 (21.3 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
+ FP V + +L + + V+ + + PDL +RF K W + + L+ ++
Sbjct: 323 EGFPFYEVTQEFLL-NKDKLVKVIRYQRPDLLLFQRFTLEKMEWPDHYACEKLLVLL 378
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 230 (86.0 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 55/135 (40%), Positives = 77/135 (57%)
Query: 302 ASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
AS + G + R + E +LL+ GVP++ A GEAEA CA L H G IT+D
Sbjct: 53 ASNKHGVARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITND 112
Query: 362 SDIWLFGARTVYKNFFD------KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP 415
D++L+GA+TVY+NF K+ H+ YT I+ RE LI LA+L+G DY P
Sbjct: 113 GDVFLYGAQTVYRNFAMNSKLSFKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLP 172
Query: 416 -GLQGVGPVTALEIL 429
G+ GVG AL+++
Sbjct: 173 KGIPGVGKEQALKLI 187
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 242 (90.2 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 60/155 (38%), Positives = 85/155 (54%)
Query: 302 ASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 361
AS + G + R + E +LL+ GVP++ A GEAEA CA L H G IT+D
Sbjct: 31 ASNKHGVARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITND 90
Query: 362 SDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQ 418
D++L+GA+TVY+NF K+ H+ YT I+ RE LI LA+L+G DY P G+
Sbjct: 91 GDVFLYGAQTVYRNFAMNSKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIP 150
Query: 419 GVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNW 453
GVG AL+++ QN + +RF+ W
Sbjct: 151 GVGKEQALKLIETLR-----GQNLL----QRFEQW 176
Score = 51 (23.0 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 16/67 (23%), Positives = 34/67 (50%)
Query: 469 RNVKLNDDFPNVSVIEAYLKPDINTN-VQKLA-WGTPDLDGLRRFAANKFGWSQNRVDQT 526
+ K + FP VI+ ++ +N N + K+ P+L + FA+ K WS++ +
Sbjct: 253 KKAKSCEGFPFSEVIQEFI---VNKNELNKIMECKRPNLLSFQIFASEKMEWSKHYACKK 309
Query: 527 LIPIMKK 533
L+ ++ +
Sbjct: 310 LLVLLTR 316
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 226 (84.6 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 49/123 (39%), Positives = 72/123 (58%)
Query: 310 KKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
K R + + E ++L+ G+P++ A GEAEA CA L G +T+D D +L+GA
Sbjct: 104 KTGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGA 163
Query: 370 RTVYKNFF--DKKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTP-GLQGVGPVTAL 426
+TVY+NF K HV YT I+ L R+ L+ LA+L+G DY P G+ GVG AL
Sbjct: 164 QTVYRNFTMNTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQAL 223
Query: 427 EIL 429
+++
Sbjct: 224 KLI 226
Score = 62 (26.9 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGVN LW++LE + + + +L K +AV +
Sbjct: 1 MGVNDLWQVLEPVKQHIHLNSLAGKTIAVDL 31
Score = 52 (23.4 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 475 DDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
+ FP VI+ +L + V+++ + PDL +RF K W + + L+ ++
Sbjct: 324 EGFPFHEVIQEFLLSK-DKLVKEIRYRRPDLLLFQRFTLEKMEWPNHYACEKLLVLL 379
Score = 37 (18.1 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 450 FKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
F N A +H + + D F N+ +Y TNV KL
Sbjct: 596 FSNSPAISRSAFSHGLKSEPETAIPDSFKNIPEQLSYESEWCTTNVNKL 644
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 203 (76.5 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 57/149 (38%), Positives = 74/149 (49%)
Query: 287 GVPFIVAPG-EAEAQCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQC 345
G+ P EAEA +L + K YV + ELL+ G+P + A GE EA C
Sbjct: 98 GMDLAALPSTEAEASADALVQPRNAKFTRYVE----DCVELLEYLGMPVLRAKGEGEALC 153
Query: 346 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK-KSHVLRYTAPDIRYYFELTREKLIQ 404
A L H IT DSD +LFGA+TV K K Y DI L R++++
Sbjct: 154 AQLNNQGHVDACITSDSDAFLFGAKTVIKVLRSNCKEPFECYNMADIESGLGLKRKQMVA 213
Query: 405 LALLVGSDYT-PGLQGVGPVTALEILAKF 432
+ALLVGSD+ G+ G GP TAL + F
Sbjct: 214 MALLVGSDHDLHGVPGFGPETALRFVQLF 242
Score = 91 (37.1 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 469 RNVKLNDDFPNVSVIEAYLKPDI--NTN-VQKLAWGTPDLDGLRRFAANKFGWSQNRVDQ 525
+ + +FPN +I YL D N N V L W PD++ L F + K W + Q
Sbjct: 351 KRIAAETNFPNEEIINLYLNDDNLDNENGVPLLTWNKPDMEILVDFLSFKQNWEPAYIRQ 410
Query: 526 TLIPIMKKISQR 537
++P++ I R
Sbjct: 411 RMLPMLSTIYLR 422
>WB|WBGene00020442 [details] [associations]
symbol:gen-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0008821 "crossover junction
endodeoxyribonuclease activity" evidence=IDA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IMP] [GO:0072422 "signal
transduction involved in DNA damage checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0005737
GO:GO:0008630 GO:GO:0003677 GO:GO:0000003 GO:GO:0000724
GO:GO:0008821 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091542 EMBL:FO080619 PIR:T34350
RefSeq:NP_498361.1 ProteinModelPortal:Q22418 STRING:Q22418
EnsemblMetazoa:T12A2.8.1 EnsemblMetazoa:T12A2.8.2 GeneID:175885
KEGG:cel:CELE_T12A2.8 UCSC:T12A2.8.1 CTD:175885 WormBase:T12A2.8
HOGENOM:HOG000021109 InParanoid:Q22418 OMA:HIWLYES NextBio:890148
GO:GO:0072422 Uniprot:Q22418
Length = 434
Score = 209 (78.6 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 77/280 (27%), Positives = 128/280 (45%)
Query: 280 QELLQLFGVPFIV-----APGEAEAQCASLELGTDKKRR----PYVSR--KMLEAQELLQ 328
Q LL+L +P +V A A E K+R P+ + + + LL
Sbjct: 62 QRLLELKIIPIVVFDNINASSSAHESKDQNEFVPRKRRSFGDSPFTNLVDHVYKTNALLT 121
Query: 329 LFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS------H 382
G+ I+APG+ EAQCA LE T G IT D D +LFG + +Y+ F + H
Sbjct: 122 ELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDYFLFGGKNLYRFDFTAGTSSTACLH 181
Query: 383 VLRYTAPDIRYYFE--LTREKLIQLALLVGSDYTP-GLQGVGPVTALEILAKFSPSDSPN 439
+ + + R + E ++R LI A+L+G DY G+Q +G V+ +IL +F D N
Sbjct: 182 DIMHLSLG-RMFMEKKVSRPHLISTAILLGCDYFQRGVQNIGIVSVFDILGEFG--DDGN 238
Query: 440 QN---YIVESMRRFKNWLAKK---NKPDTHLTRKLRNVKLNDD--FPNV----SVIEAYL 487
+ +++ + RF +++ ++ DT +LR K N FPN + I YL
Sbjct: 239 EEIDPHVI--LDRFASYVREEIPARSEDTQRKLRLRRKKYNFPVGFPNCDAVHNAITMYL 296
Query: 488 KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
+P +++ + K+ + + + GW R + L
Sbjct: 297 RPPVSSEIPKIIPRAANFQQVAEIMMKECGWPATRTQKEL 336
Score = 57 (25.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
M +NG+W+ + VP ET+ +K L++
Sbjct: 1 MTINGIWEWANHVVRKVPNETMRDKTLSI 29
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 173 (66.0 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 43/125 (34%), Positives = 67/125 (53%)
Query: 311 KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
KR V+RK E +LL L GVP + AP EAEAQCA + ++D D G+
Sbjct: 129 KRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMDSLTLGS 188
Query: 370 RTVYKN-FFD--KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ + FF KK +L + + LT+++ I L++L+G DY ++G+GP A+
Sbjct: 189 TVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDYCDSIKGIGPKRAI 248
Query: 427 EILAK 431
E++ K
Sbjct: 249 ELIQK 253
Score = 90 (36.7 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 270 TITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
T+T + + + +LL L GVP + AP EAEAQCA +
Sbjct: 133 TVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEI 167
Score = 81 (33.6 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 26/89 (29%), Positives = 41/89 (46%)
Query: 454 LAKKNKPDTHLTRKLRNVK--LNDDFPNVSVIEAYLKPDI--NTNVQKLAWGTPDLDGLR 509
L +K+K + + L K L + FP V E + P++ + W PD++GL
Sbjct: 250 LIQKHKSLEEVIKHLDKSKYPLPEFFPYPEVRELFKNPNVIPADQLPPFQWKDPDVEGLN 309
Query: 510 RFAANKFGWSQNRVDQTLIPIMKKISQRS 538
+F + G+S RV Q I +KK S
Sbjct: 310 KFLVEEMGFSDVRVAQG-IEKLKKFKNTS 337
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 180 (68.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 48/149 (32%), Positives = 79/149 (53%)
Query: 298 EAQCASLELGT----DK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLEL 350
E Q + E+GT D+ KR V+R+ EA+ LL+L G+PF+ AP EAEAQCA+L
Sbjct: 110 EDQEETKEVGTAEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALAR 169
Query: 351 GNHTQGVITDDSDIWLFGARTVYKNF-FD--KKSHVLRYTAPDIRYYFELTREKLIQLAL 407
++D D F A + ++ F +K + Y +++ E+ + L +
Sbjct: 170 SGKVYAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCI 229
Query: 408 LVGSDYTPGLQGVGPVTALEILAKFSPSD 436
L+G DY ++GVGP A+E++ ++ D
Sbjct: 230 LLGCDYCEPIRGVGPARAVELIRQYGTLD 258
Score = 105 (42.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
+T Q + EA+ LL+L G+PF+ AP EAEAQCA+L
Sbjct: 134 VTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAAL 167
Score = 66 (28.3 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 475 DDFPNVSVIEAYLKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRV 523
+D+P +L ++ + +L W +PD DG+ +F + G++++RV
Sbjct: 273 EDWPYEDARRLFLDAEVLPGEEIELKWKSPDADGIIQFLVKEKGFNEDRV 322
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 203 (76.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 63/236 (26%), Positives = 115/236 (48%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EAQ A E +K KR V+++ E ++LL L G+P++ APGEAEA CA+L
Sbjct: 113 EAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + + LT E+ + L +L+G
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGC 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRN- 470
DY ++G+GP A+E++ + + Q+ + +NWL K+ + L + N
Sbjct: 233 DYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQK-LFLEPDVINP 291
Query: 471 --VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
V+L PN + ++ + N +++ +G++R + ++ G +Q R+D
Sbjct: 292 DDVELKWTEPNEEELVQFMCGEKQFNEERIR------NGVKRLSKSRQGSTQGRLD 341
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 180 (68.4 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 51/167 (30%), Positives = 83/167 (49%)
Query: 297 AEAQCASLELGTDK--KRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNH 353
A+AQ A + DK KR V+++ E ++LL L GVP+I AP EAEA CA+L
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 354 TQGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVG 410
T+D D FG + ++ KK + + I ELT ++ I L +L+G
Sbjct: 172 VYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLG 231
Query: 411 SDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKK 457
DY ++G+GP A++++ + + +N ++WL K+
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKE 278
Score = 98 (39.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
+T+Q + E ++LL L GVP+I AP EAEA CA+L
Sbjct: 133 VTKQHNEECKKLLSLMGVPYIEAPCEAEASCAAL 166
Score = 62 (26.9 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 486 YLKPDI--NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
+L+P++ T+V L W PD DGL +F + +S++R+
Sbjct: 283 FLEPEVVDGTSVD-LKWNEPDEDGLIQFMCAEKQFSEDRI 321
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 171 (65.3 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
Identities = 51/168 (30%), Positives = 81/168 (48%)
Query: 300 QCASLELGTDKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVIT 359
+C + K R + + + + LL G+ + PGEAEA CA L GVI+
Sbjct: 103 ECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVIS 162
Query: 360 DDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDIRYYFELT------REKLIQLALLVGS 411
DSD + +GA VY+NF + + A DI E+T ++K+I +ALL G
Sbjct: 163 QDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGC 222
Query: 412 DYTP-GLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKN 458
DY P G+ G+G L++ K+ ++ I++ MR ++ K N
Sbjct: 223 DYCPDGIGGIGKDGVLKLFNKYKETE------ILDRMRSWRGETDKYN 264
Score = 75 (31.5 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 453 WLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYL-KPDINTNVQKLAWGTPDLDGLRRF 511
W ++ + LT + R L+ DFPN +I +L +PD N+ L W P+L +
Sbjct: 307 WKEQRLSIKSELTLR-RKALLSPDFPNEEIIAEFLSEPDTIPNLN-LNWRQPNLVKFIKQ 364
Query: 512 AANKFGWSQNRVDQTLIPIMKK 533
+ W + Q PI+ +
Sbjct: 365 IGHLLQWPEIYCFQKFFPILTR 386
Score = 47 (21.6 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV LW +L + P+ L K +A+ +
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDL 31
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 195 (73.7 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 61/236 (25%), Positives = 112/236 (47%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
EAQ A E +K KR V+++ E + LL L G+P++ AP EAEA CA+L
Sbjct: 113 EAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + I L +E+ + L +L+GS
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGS 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL--- 468
DY ++G+GP A++++ K + + +NWL K+ + L ++
Sbjct: 233 DYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQ-QLFLEPEVLDP 291
Query: 469 RNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
+V+L PN + ++ + + +++ G+RR + ++ G +Q R+D
Sbjct: 292 ESVELKWSEPNEEELIKFMCGEKQFSEERIR------SGVRRLSKSRQGSTQGRLD 341
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 173 (66.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 39/109 (35%), Positives = 57/109 (52%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK- 380
E LL L GVP I APGEAEA CA L V ++D D FG + + K+
Sbjct: 112 ECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRD 171
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
S + Y+ P + +L E+ + L +L+G DY + G+GP AL+++
Sbjct: 172 SEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLI 220
Score = 63 (27.2 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 463 HLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNR 522
H+ RK + LN + + + + P I+ V LAW PD +GL +F + + R
Sbjct: 232 HVNRKTHPIPLNWQYKDARKL-FFETPKIDDPV--LAWSEPDEEGLVQFLCKEKPLKEER 288
Query: 523 V 523
V
Sbjct: 289 V 289
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 181 (68.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 69/234 (29%), Positives = 111/234 (47%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKK 380
EA+ + G+ + EAEAQCA L + + DSDI+LFGA+TVY+ +
Sbjct: 124 EAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICLGEG 183
Query: 381 SHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQ 440
+V+ Y DI+ L R LI LALL+GSDY+ G++G+ A E++ S D+
Sbjct: 184 GYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVR--SIGDNVIL 241
Query: 441 NYIVESMRRF--KNWLAKKNKPDTHLTRK--LRNVKLNDDF--PN-----VSVIEAYLKP 489
+ F K +KK + ++K L V +N + P VI+A++ P
Sbjct: 242 EKVASEGLSFAEKPRKSKKQVRPSVCSKKGTLPLVVINGNNRDPERLEEIKQVIDAFMNP 301
Query: 490 -----DINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKKISQRS 538
D NT + LA + L+ F W + D+ ++P K+++R+
Sbjct: 302 KCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILP---KVAERN 352
Score = 63 (27.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV LW +LE K P++ L+NK + V +
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDL 31
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 190 (71.9 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 60/236 (25%), Positives = 112/236 (47%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
+AQ A E +K KR V+++ E + LL L G+P++ AP EAEA CA+L
Sbjct: 113 QAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + I L +E+ + L +L+GS
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLGS 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL--- 468
DY ++G+GP A++++ K + + +NWL K+ + L ++
Sbjct: 233 DYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQ-QLFLEPEVLDP 291
Query: 469 RNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
+V+L PN + ++ + + +++ G+RR + ++ G +Q R+D
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIR------SGVRRLSKSRQGSTQGRLD 341
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 189 (71.6 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 56/205 (27%), Positives = 100/205 (48%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FD-- 378
E ++LL+L G+P+I+AP EAEAQCA L ++D D F + + ++ F
Sbjct: 140 ECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K + + ++ R++ + L +L+G DY + VGP TAL+++ + ++
Sbjct: 200 RKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLET- 258
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
IVE M++ + K P+ R++ N P V + PD N
Sbjct: 259 ----IVEKMKKGE---LKYTVPEDWPFEDARDLFFN---PAVHPAD---HPDCN-----F 300
Query: 499 AWGTPDLDGLRRFAANKFGWSQNRV 523
W PD++GL ++ + G+S++RV
Sbjct: 301 KWEKPDVEGLVKYLVTEKGFSEDRV 325
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 175 (66.7 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 41/135 (30%), Positives = 68/135 (50%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV--YKNFFD- 378
EA+ELL L GVP++ AP EAEAQCA+L T+D D FG+ + Y + +
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
+K V ++ + + + I L +L+G DY ++G+GP A+E++ + ++
Sbjct: 200 RKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETI 259
Query: 439 NQNYIVESMRRFKNW 453
N +NW
Sbjct: 260 LDNLDSSKYTVPENW 274
Score = 108 (43.1 bits), Expect = 0.00030, Sum P(2) = 0.00029
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 263 KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K R +T++ ++EA+ELL L GVP++ AP EAEAQCA+L
Sbjct: 125 KFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAAL 166
Score = 55 (24.4 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 484 EAYLKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK 532
E +++P++ + + L W PD +GL +F +++ RV +MK
Sbjct: 281 ELFIEPEVADADSIDLKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMK 330
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 59/236 (25%), Positives = 112/236 (47%)
Query: 296 EAEAQCASLELGTDKKRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
+A+A A E+ KR V+++ E + LL L GVP++ AP EAEA CA+L
Sbjct: 113 QAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + + L +E+ + L +L+GS
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGS 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRN- 470
DY ++G+GP A++++ K + + +NWL K+ + L ++ +
Sbjct: 233 DYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQ-QLFLEPEVLDP 291
Query: 471 --VKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
V+L PN + ++ + + +++ G+RR + ++ G +Q R+D
Sbjct: 292 EAVELKWSEPNEEELVKFMCGEKQFSEERIR------SGVRRLSKSRQGSTQGRLD 341
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 59/217 (27%), Positives = 104/217 (47%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
+ + LL+L GVP + A EAEAQCA+L GV ++D D FGA ++ D S
Sbjct: 141 DCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 382 H---VLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
V+ + I +LT ++ I L +L G DY ++G+G TAL+++ + ++
Sbjct: 201 RKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 260
Query: 439 NQNYIVESMRRFKNWL---AKK--NKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
+N E + + W A+K +PD + ++K P+ I +L +
Sbjct: 261 LENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKWTS--PDEEGIVQFLVNENGF 318
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPI 530
N+ ++ T ++ ++ A NK SQ R++ P+
Sbjct: 319 NIDRV---TKAIEKIKT-AKNKS--SQGRLESFFKPV 349
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 186 (70.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 59/236 (25%), Positives = 111/236 (47%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
+AQ A E +K KR V+++ E + LL L G+P++ AP EAEA CA+L
Sbjct: 113 QAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + I L +E+ + L +L+GS
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGS 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL--- 468
DY ++G+GP A++++ K + + +NWL K+ L ++
Sbjct: 233 DYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAH-QLFLEPEVLDP 291
Query: 469 RNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
+V+L PN + ++ + + +++ G++R + ++ G +Q R+D
Sbjct: 292 ESVELKWSEPNEEELIKFMCGEKQFSEERIR------SGVKRLSKSRQGSTQGRLD 341
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 185 (70.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 54/207 (26%), Positives = 98/207 (47%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
E ++LL L G+P++ AP EAEA CA+L T+D D FG + ++
Sbjct: 140 ECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + + +T E+ + L +L+GSDY ++G+GP A++++ + D
Sbjct: 200 KKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIDEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNVQKL 498
N ++ +NWL K+ K HL L ++ D + IE + + +
Sbjct: 260 IDNIDLKKYPVPENWLHKEAK---HLF--LEPEVVDTDITELKWIEPDEEGLVAFMCGEK 314
Query: 499 AWGTPDL-DGLRRFAANKFGWSQNRVD 524
+ + +G ++ A N+ G +Q R+D
Sbjct: 315 QFSEDRIRNGAKKLAKNRQGSTQGRLD 341
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 184 (69.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 56/188 (29%), Positives = 94/188 (50%)
Query: 310 KKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
+KR V+R+ E A++LLQL G+P + AP EAEAQCA L G ++D D +
Sbjct: 128 EKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYE 187
Query: 369 ARTVYKNF-FD--KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTA 425
+ ++ F +K + + D ++T+E+ I L +L+G DY ++G+G TA
Sbjct: 188 PPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATA 247
Query: 426 LEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEA 485
+++ + D+ IVE + KN K P+ + R + +N + N S I
Sbjct: 248 FKLIKEHGSLDN-----IVEWI---KNNKTKYTLPENWPYDEARQLFMNPEVTNASEINL 299
Query: 486 YLK-PDIN 492
K PD++
Sbjct: 300 KWKEPDVD 307
Score = 104 (41.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 271 ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 307
+T + + EA++LLQL G+P + AP EAEAQCA L G
Sbjct: 134 VTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARG 170
Score = 79 (32.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 473 LNDDFPNVSVIEAYLKPDI-NTNVQKLAWGTPDLDGLRRFAANKFGWSQNRV 523
L +++P + ++ P++ N + L W PD+DGL F + G+S++R+
Sbjct: 273 LPENWPYDEARQLFMNPEVTNASEINLKWKEPDVDGLIEFMVKQKGFSEDRI 324
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 165 (63.1 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 52/160 (32%), Positives = 78/160 (48%)
Query: 309 DKKRRPYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 368
DK R + + + + + LL G+ + PGEAEA A L GVI+ DSD + +G
Sbjct: 112 DKGRTRF-NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYG 170
Query: 369 ARTVYKNFF--DKKSHVLRYTAPDIRYYFELT------REKLIQLALLVGSDYTP-GLQG 419
A VY+NF + + A DI E+T + K+I +ALL G DY P G+ G
Sbjct: 171 AIRVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGG 230
Query: 420 VGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNK 459
+G L++ K+ S E + R +NW A+ +K
Sbjct: 231 IGKDGVLKLFNKYKES---------EILDRLRNWRAETDK 261
Score = 59 (25.8 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 469 RNVKLNDDFPNVSVIEAYL-KPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTL 527
R L +FPN +I +L +P N+ L W P+L + + W + Q
Sbjct: 321 RKALLAPEFPNEEIISEFLSEPPTIPNLN-LGWRQPNLVKFIKQIGHLLQWPEIYCFQKF 379
Query: 528 IPIMKK 533
PI+ +
Sbjct: 380 FPILTR 385
Score = 51 (23.0 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGI 140
MGV LW +L + P+ L K +A+ +
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDL 31
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 181 (68.8 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 58/236 (24%), Positives = 111/236 (47%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
+AQ A E +K KR V+++ E + LL L G+P++ AP EAEA CA+L
Sbjct: 113 QAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKV 172
Query: 355 QGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + + L +E+ + L +L+GS
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGS 232
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL--- 468
DY ++G+GP A++++ K + + +NWL K+ + L ++
Sbjct: 233 DYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAR-QLFLEPEVLDP 291
Query: 469 RNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
+V+L PN + ++ + + +++ G++R ++ G +Q R+D
Sbjct: 292 ESVELKWSEPNEEELVKFMCGEKQFSEERIR------SGVKRLNKSRQGSTQGRLD 341
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 181 (68.8 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 67/241 (27%), Positives = 110/241 (45%)
Query: 297 AEAQCASLELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQ 355
AEA LE ++R VS++ E AQ+LL L G+P+I+AP EAEAQCA L
Sbjct: 113 AEAT-TELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVY 171
Query: 356 GVITDDSDIWLFGARTVYKNF-FD--KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSD 412
++D D + + ++ F KK + + +LT E+ + L +++G D
Sbjct: 172 AAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCD 231
Query: 413 YTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVK 472
Y ++GVGPVTAL+++ + IVE + + N T+ K
Sbjct: 232 YCESIRGVGPVTALKLIKTHGSIEK-----IVEFIES-----GESNN-----TKW----K 272
Query: 473 LNDDFPNVSVIEAYLKPD-INTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIM 531
+ +D+P +L P+ I+ N L W P L + + +S+ RV + +
Sbjct: 273 IPEDWPYKQARMLFLDPEVIDGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLK 332
Query: 532 K 532
K
Sbjct: 333 K 333
Score = 125 (49.1 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 259 LERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSR 318
LE+ KQ R ++++ + EAQ+LL L G+P+I+AP EAEAQCA L KK + Y +
Sbjct: 119 LEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELA----KKGKVYAAA 174
Query: 319 KMLEAQELLQLFGVPFIV 336
E + L + PF++
Sbjct: 175 S--EDMDTL-CYRTPFLL 189
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 179 (68.1 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 57/236 (24%), Positives = 112/236 (47%)
Query: 298 EAQCASLELGTDK--KRRPYVSRKML-EAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 354
+AQ A +E +K KR V+++ E + LL L G+P++ AP EAEA CA+L
Sbjct: 111 QAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKV 170
Query: 355 QGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPDIRYYFELTREKLIQLALLVGS 411
T+D D FG+ + ++ KK + + + L +E+ + L +L+GS
Sbjct: 171 YAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGS 230
Query: 412 DYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKL--- 468
DY ++G+G A++++ K + + +NWL K+ + L ++
Sbjct: 231 DYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQ-QLFLEPEVVDP 289
Query: 469 RNVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
+V+L PN + ++ + + +++ G++R + ++ G +Q R+D
Sbjct: 290 ESVELKWSEPNEEELVKFMCGEKQFSEERIR------SGVKRLSKSRQGSTQGRLD 339
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 179 (68.1 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 55/209 (26%), Positives = 100/209 (47%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--- 378
EA+ LL L G+P + AP EAEAQCA L G +T+D D FG+ + ++F
Sbjct: 140 EAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMDALTFGSTVLLRHFLAPVA 199
Query: 379 KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
KK + + +L+ E+ I L +L+G DY ++GVGP A+E++ + ++
Sbjct: 200 KKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETI 259
Query: 439 NQNYIVESMRRFKNWLAKKNKP---DTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTNV 495
+N ++W K+ + + +T K V+L +V + +L + N N
Sbjct: 260 LENIDQNKYPPPEDWPYKRARELFLNPEVT-KPEEVELTWKEADVEGVIQFLCGEKNFNE 318
Query: 496 QKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
+++ + L + ++ +Q R+D
Sbjct: 319 ERIR------NALAKLKTSRKSGTQGRID 341
Score = 101 (40.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 246 KSSTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL 304
K+ T K++ + E K R +T+Q + EA+ LL L G+P + AP EAEAQCA L
Sbjct: 109 KALTEAKEKGDVK-EAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHL 166
Score = 66 (28.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 475 DDFPNVSVIEAYLKPDINTNVQ-KLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMKK 533
+D+P E +L P++ + +L W D++G+ +F + +++ R+ L + K
Sbjct: 272 EDWPYKRARELFLNPEVTKPEEVELTWKEADVEGVIQFLCGEKNFNEERIRNALAKL--K 329
Query: 534 ISQRS 538
S++S
Sbjct: 330 TSRKS 334
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 175 (66.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 49/211 (23%), Positives = 101/211 (47%)
Query: 322 EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 381
E ++LL L G+P++ AP EAEA CA+L T+D D FG + ++ ++
Sbjct: 140 ECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEA 199
Query: 382 HVLRYTAPDIRYYFE---LTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSP 438
L + F+ + E+ + L +L+GSDY ++G+GP A++++ + +
Sbjct: 200 KKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIRGIGPKRAIDLIRQHKTIEEI 259
Query: 439 NQNYIVESMRRFKNWLAKKNK-----PDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINT 493
N ++ +NWL K+ + P+ + + +K + P+ + A++ +
Sbjct: 260 IDNIDLKKYPIPENWLHKEARQLFLEPEV-IDADITELKWTE--PDEEGLVAFMCGEKQF 316
Query: 494 NVQKLAWGTPDLDGLRRFAANKFGWSQNRVD 524
+ ++ +G ++ A N+ G +Q R+D
Sbjct: 317 SEDRIR------NGAKKLAKNRQGSTQGRLD 341
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 170 (64.9 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 65/234 (27%), Positives = 106/234 (45%)
Query: 311 KRRPYVSRKM-LEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 369
+R V+R+ E ++LL+L G+P+I AP EAEAQCA L ++D D F A
Sbjct: 128 RRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEA 187
Query: 370 RTVYKNF-FD--KKSHVLRYTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTAL 426
+ ++ F +K + + R + I L +L+G DY + VGP TAL
Sbjct: 188 PILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIPKVGPNTAL 247
Query: 427 EILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLRNVKLNDDFPNVSVIEAY 486
+++ D +VES+ K+ K P++ + R + LN D + + E
Sbjct: 248 KLIR-----DHGTLEKVVESIE--KDPKQKYVIPESWPYQDARELFLNPDVRDANDPECD 300
Query: 487 LKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIPIMK--KISQRS 538
K W PD++GL F G++++RV + K K +Q+S
Sbjct: 301 FK-----------WEAPDIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQS 343
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 135 (52.6 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
GV +IVAP EA++Q A L + + +IT+DSD+ FG + V DK + L
Sbjct: 141 GVDYIVAPYEADSQLAYLNKNDFAEAIITEDSDLLAFGCKKVLLKM-DKFGNGLEIDQAR 199
Query: 391 IRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
L T EK + +L G DY P + G+G A ++L +++P+ +++
Sbjct: 200 FGMCRSLGDVFTEEKFRYMCILSGCDYLPSIHGIGLAKACKLL---KVANNPDITKVIQK 256
Query: 447 MRRF 450
+ ++
Sbjct: 257 IGQY 260
Score = 70 (29.7 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 238 FDYGCDVIKSSTLEK---DRDQLLLERGKQT----RLAST---------ITEQMSREAQE 281
FD GC + +EK ++ Q L++GKQ +LA IT M+ E +
Sbjct: 77 FD-GCTLPSKKDVEKARREKRQTNLQKGKQLLREGKLAEARECFSRSVNITSSMAHEVIK 135
Query: 282 LLQLFGVPFIVAPGEAEAQCASL 304
+ GV +IVAP EA++Q A L
Sbjct: 136 AARSEGVDYIVAPYEADSQLAYL 158
Score = 56 (24.8 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL + L+ + +PV V+ + K +AV
Sbjct: 1 MGIQGLLQFLKEASEPVHVKKYKGKTVAV 29
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 168 (64.2 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 63/243 (25%), Positives = 109/243 (44%)
Query: 305 ELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
E+ R V+RK E A++LL L G+P I AP EAE+QCA L N T+D+D
Sbjct: 124 EIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDAD 183
Query: 364 IWLFGARTVYKNFF-------------DKKSHVL-RYTAPDIRYYFELTREKLIQLALLV 409
+FG + + +N K+ ++L + LT ++ I +L
Sbjct: 184 ALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILC 243
Query: 410 GSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLR 469
G DY ++G+G TA ++ +++ + I+E++ + N K P ++ R
Sbjct: 244 GCDYCDTIKGIGSKTAYNLIKEYNCIEK-----IIENIDQ--N---KYQVPSNFRFQEAR 293
Query: 470 NVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIP 529
+N PNV K DI K+ W P ++ L+ F + +++ RV +
Sbjct: 294 KSFIN---PNVLP-----KEDI-----KIDWNEPQIEELKHFLIKDYNFNELRVTNYINR 340
Query: 530 IMK 532
++K
Sbjct: 341 LLK 343
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 168 (64.2 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 63/243 (25%), Positives = 109/243 (44%)
Query: 305 ELGTDKKRRPYVSRKMLE-AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 363
E+ R V+RK E A++LL L G+P I AP EAE+QCA L N T+D+D
Sbjct: 124 EIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDAD 183
Query: 364 IWLFGARTVYKNFF-------------DKKSHVL-RYTAPDIRYYFELTREKLIQLALLV 409
+FG + + +N K+ ++L + LT ++ I +L
Sbjct: 184 ALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILC 243
Query: 410 GSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVESMRRFKNWLAKKNKPDTHLTRKLR 469
G DY ++G+G TA ++ +++ + I+E++ + N K P ++ R
Sbjct: 244 GCDYCDTIKGIGSKTAYNLIKEYNCIEK-----IIENIDQ--N---KYQVPSNFRFQEAR 293
Query: 470 NVKLNDDFPNVSVIEAYLKPDINTNVQKLAWGTPDLDGLRRFAANKFGWSQNRVDQTLIP 529
+N PNV K DI K+ W P ++ L+ F + +++ RV +
Sbjct: 294 KSFIN---PNVLP-----KEDI-----KIDWNEPQIEELKHFLIKDYNFNELRVTNYINR 340
Query: 530 IMK 532
++K
Sbjct: 341 LLK 343
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 164 (62.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 53/144 (36%), Positives = 77/144 (53%)
Query: 314 PYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV- 372
P ++ K++ A L+ G+ IVAP EA+AQ LE N G+IT+DSD+ +FGA+TV
Sbjct: 127 PEMAWKLIIA---LREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDMLVFGAQTVL 183
Query: 373 YK-NFFDKKSHVLRY---TAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
+K + F + R A D+ L EKL +A+ G DYT G+ G+G TAL
Sbjct: 184 FKMDGFGNCITIRRNDIANAQDLN--LRLPIEKLRHMAIFSGCDYTDGVAGMGLKTALRY 241
Query: 429 LAKFSPSDSPNQNYIVESMRRFKN 452
L K+ P + +MR K+
Sbjct: 242 LQKY-----PEPRAAIRAMRLDKS 260
Score = 46 (21.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL LL+ K VE K L V
Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGV 29
>UNIPROTKB|G4MVT4 [details] [associations]
symbol:MGG_01800 "Flap structure-specific endonuclease"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 EMBL:CM001232 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K15339 RefSeq:XP_003714807.1 ProteinModelPortal:G4MVT4
EnsemblFungi:MGG_01800T0 GeneID:2679379 KEGG:mgr:MGG_01800
Uniprot:G4MVT4
Length = 932
Score = 175 (66.7 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 57/190 (30%), Positives = 91/190 (47%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
VS M A+ +++LFG F APGEAEA+CA L+ V+++D D +FG +N
Sbjct: 103 VSNAM--AKRMIRLFGFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFGCTRTLRN 160
Query: 376 FFDK-------KSHVLRYTAPDIR-YYFELTREKLIQLALLVGSDYTP-GLQGVGPVTAL 426
+ + +HV Y + I+ + L RE ++ +AL+ G DY P G+ G G A
Sbjct: 161 WSSEGVRGSKEPTHVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVAC 220
Query: 427 EIL-AKFSPSDSPNQNYIVESMRRFKNWLA---KKNKPDTHLTRKLRNVKLNDDFPNVSV 482
E F S + ++ +K L + NK R R + + DDFP++ V
Sbjct: 221 EAARGGFGHSLCRIKKSDSSALAEWKEKLLAELRDNKSGFFRVRH-RALVIPDDFPSIEV 279
Query: 483 IEAYLKPDIN 492
+ Y P ++
Sbjct: 280 LRYYTHPVVS 289
Score = 117 (46.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 43/152 (28%), Positives = 70/152 (46%)
Query: 381 SHVLRYTAPDIR-YYFELTREKLIQLALLVGSDYTP-GLQGVGPVTALEIL-AKFSPSDS 437
+HV Y + I+ + L RE ++ +AL+ G DY P G+ G G A E F S
Sbjct: 173 THVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVACEAARGGFGHSLC 232
Query: 438 PNQNYIVESMRRFKNWLA---KKNKPDTHLTRKLRNVKLNDDFPNVSVIEAYLKPDINTN 494
+ ++ +K L + NK R R + + DDFP++ V+ Y P ++ +
Sbjct: 233 RIKKSDSSALAEWKEKLLAELRDNKSGFFRVRH-RALVIPDDFPSIEVLRYYTHPVVSQD 291
Query: 495 --VQKLAWGTP-----DLDGLRRFAANKFGWS 519
++ L P D+ GLR+F A F W+
Sbjct: 292 ETLEHLENSFPSNNSLDVQGLRQFVAETFDWT 323
Score = 81 (33.6 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 261 RGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLE 305
R TR +T + A+ +++LFG F APGEAEA+CA L+
Sbjct: 90 RRSTTRGGATGDVVSNAMAKRMIRLFGFQFHEAPGEAEAECALLQ 134
Score = 39 (18.8 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 292 VAPGEAEAQCASLELGTDKKRRP 314
+ PGE + C ++KRRP
Sbjct: 10 IGPGERISLCKLAVQTLEEKRRP 32
>SGD|S000002671 [details] [associations]
symbol:DIN7 "Mitochondrial nuclease functioning in DNA repair
and replication" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
SGD:S000002671 GO:GO:0005739 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006938 GO:GO:0004519 EMBL:Z70202
EMBL:Z68290 GO:GO:0004518 RefSeq:NP_010553.3 GeneID:851860
KEGG:sce:YDR267C EMBL:X90707 PIR:S61118 RefSeq:NP_010549.3
ProteinModelPortal:Q12086 SMR:Q12086 DIP:DIP-5214N IntAct:Q12086
MINT:MINT-493226 STRING:Q12086 EnsemblFungi:YDR263C GeneID:851856
KEGG:sce:YDR263C CYGD:YDR263c eggNOG:COG0258
GeneTree:ENSGT00510000047676 OrthoDB:EOG44QX8J NextBio:969788
Genevestigator:Q12086 GermOnline:YDR263C PANTHER:PTHR11081
SUPFAM:SSF47807 Uniprot:Q12086
Length = 430
Score = 162 (62.1 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 40/111 (36%), Positives = 65/111 (58%)
Query: 328 QLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD--KKSHVLR 385
+L +P+IVAP EA+ Q LE QG+I++DSD+ +FG +T+ D K + +
Sbjct: 138 KLHSIPYIVAPFEADPQMVYLEKMGLIQGIISEDSDLLVFGCKTLITKLNDQGKALEISK 197
Query: 386 --YTA-PDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
++A P+ EL+ ++ L L G DYT G+ VG VTA++I+ ++S
Sbjct: 198 DDFSALPENFPLGELSEQQFRNLVCLAGCDYTSGIWKVGVVTAMKIVKRYS 248
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 162 (62.1 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 39/111 (35%), Positives = 65/111 (58%)
Query: 328 QLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK--NFFDKKSHVLR 385
+L G+ +IVAP EA++Q LE N QG+I++DSD+ +FG R + N + + + R
Sbjct: 138 KLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVFGCRRLITKLNDYGECLEICR 197
Query: 386 YTAPDIRYYF---ELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
+ F LT E++I + L G DYT G+ VG +TA++++ +F+
Sbjct: 198 DNFIKLPKKFPLGSLTNEEIITMVCLSGCDYTNGIPKVGLITAMKLVRRFN 248
Score = 49 (22.3 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL L+ PV + E +VLA+
Sbjct: 1 MGIQGLLPQLKPIQNPVSLRRYEGEVLAI 29
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 145 (56.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 40/123 (32%), Positives = 64/123 (52%)
Query: 323 AQELLQLF---GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA-RTVYKNFFD 378
A EL+Q+ V ++VAP EA+AQ A L + +IT+DSD+ FG R ++K D
Sbjct: 130 AHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCLRIIFK--MD 187
Query: 379 KKSHVLRYTAPDIRYYFELT-----REKLIQLALLVGSDYTPGLQGVGPVTALEILAKFS 433
K H + + A + +L+ + L+++ +L G DY L G+G A ++ KF
Sbjct: 188 KFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFK 247
Query: 434 PSD 436
D
Sbjct: 248 SYD 250
Score = 53 (23.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL LL++ P+ ++ LE ++AV
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELEGCIVAV 29
>UNIPROTKB|G4NE19 [details] [associations]
symbol:MGG_00841 "Exonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 EMBL:CM001235 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_003718138.1
ProteinModelPortal:G4NE19 EnsemblFungi:MGG_00841T0 GeneID:2674671
KEGG:mgr:MGG_00841 Uniprot:G4NE19
Length = 780
Score = 148 (57.2 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 49/194 (25%), Positives = 92/194 (47%)
Query: 268 ASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGTDKKRRPYVSRKMLEAQELL 327
+ +TE + +E + G+ + A A+A + D P ++R+++E EL
Sbjct: 84 SKALTEASRAKRREESKKAGMELLKAGKPAQAY-QEFQKAIDVT--PEMARELIE--ELK 138
Query: 328 QLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYT 387
++ VP++VAP EA+AQ LE + G+I++DSD+ +FGA+ + D+ +
Sbjct: 139 KI-DVPYVVAPYEADAQMVYLERNGYVSGIISEDSDLLVFGAKRLLTKL-DQHGQCIEVN 196
Query: 388 APDIRYYFEL-----TREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNY 442
+ E+ T + Q+A+ G DY G+ +G TA ++ K + +
Sbjct: 197 RREFCAVREISLTGWTDAEFRQMAIFSGCDYLDGINKMGLKTAYRMIRKHKTPEKVIRQL 256
Query: 443 IVESMRRF-KNWLA 455
E + +N+LA
Sbjct: 257 QFEGKHKISENYLA 270
Score = 48 (22.0 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGIL-YFTQGRASALLD 153
MG+ GL LL++ +P ++ + LAV + +G S L+
Sbjct: 1 MGIVGLLPLLKSIQRPTELKKFAGETLAVDAYGWLHRGAVSCALE 45
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 142 (55.0 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 37/125 (29%), Positives = 67/125 (53%)
Query: 315 YVSRKMLEAQEL-LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVY 373
YV+ +M ++ L + +IVAP EA+ Q LE G++++DSD+ +FG + +
Sbjct: 124 YVTSQMAKSVMCELDNLSIKYIVAPYEADPQMVYLEKMGIVDGILSEDSDLLIFGCKKLI 183
Query: 374 KNFFDKKSHVL----RYT-APDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
D + V ++ +I Y + E+L +A+L G DYT G+ G+G TA ++
Sbjct: 184 TKLKDDGTCVEINRDKFDKVKEIPYLNQYNMEQLRLVAMLSGCDYTKGVPGIGLKTAFQL 243
Query: 429 LAKFS 433
+ K++
Sbjct: 244 VRKYN 248
Score = 51 (23.0 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MGVNGL ++L P +E + LA+
Sbjct: 1 MGVNGLLQILREIQDPCSLERYRGQTLAI 29
>ASPGD|ASPL0000035217 [details] [associations]
symbol:AN3186 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00485
GO:GO:0003677 GO:GO:0006281 EMBL:BN001306 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000052 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K15339 RefSeq:XP_660790.1
ProteinModelPortal:Q5B8E4 EnsemblFungi:CADANIAT00009883
GeneID:2874333 KEGG:ani:AN3186.2 HOGENOM:HOG000198967
OrthoDB:EOG4QZBVF Uniprot:Q5B8E4
Length = 822
Score = 148 (57.2 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 52/201 (25%), Positives = 88/201 (43%)
Query: 313 RPYVSRKMLEAQELL-QLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGART 371
R Y + +++ ++L LF P APGEAEA+C+ L++ V+++D D +FG+
Sbjct: 95 RSYGNAPIIQLSKILIDLFRFPRHDAPGEAEAECSRLQMAGVVDAVMSNDVDALMFGSGF 154
Query: 372 VYKNFFDKK-------SHVLRYTAPD-IRYYFELTREKLIQLALLVGSDYTP-GLQGVGP 422
NF + +HV Y D +L R +I A+L G DY P G+ G
Sbjct: 155 TVMNFSKEAGSGAGGATHVTSYRMGDGADSNVKLDRPGMILFAMLSGGDYLPSGVPKCGS 214
Query: 423 VTALEILAKFSPSD--SPNQNYIVESMRRFKNWLAK-----KNKPDTHLTRKLRNVKLND 475
A EI D + E R W + + + K + V++ +
Sbjct: 215 KLAAEIATAGFGKDLLEALEADGAELETRLNEWRERLQYELEENESGYFQTKHKAVRIPE 274
Query: 476 DFPNVSVIEAYLKPDINTNVQ 496
FP+ +++ Y KP +++ Q
Sbjct: 275 TFPDRTILSYYAKPVVSSEQQ 295
>GENEDB_PFALCIPARUM|PF10_0080 [details] [associations]
symbol:PF10_0080 "endonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 327 LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS-HVLR 385
L L +P + +AE +CA ++ + V++DD+D FGA + + +KK H++
Sbjct: 232 LLLENIPIFITKNDAEKECA-IQCSHERDIVVSDDTDALAFGAPNLIRFITNKKKRHIIN 290
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
++ + E+ I +L G DY+ + G+GPV A EI+ K+
Sbjct: 291 --KEELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEIIKKY 335
>UNIPROTKB|Q8IJW1 [details] [associations]
symbol:PF10_0080 "Endonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 327 LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS-HVLR 385
L L +P + +AE +CA ++ + V++DD+D FGA + + +KK H++
Sbjct: 232 LLLENIPIFITKNDAEKECA-IQCSHERDIVVSDDTDALAFGAPNLIRFITNKKKRHIIN 290
Query: 386 YTAPDIRYYFELTREKLIQLALLVGSDYTPGLQGVGPVTALEILAKF 432
++ + E+ I +L G DY+ + G+GPV A EI+ K+
Sbjct: 291 --KEELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEIIKKY 335
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 136 (52.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 48/160 (30%), Positives = 82/160 (51%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++ K+++A L GV +VAP EA+AQ A L Q VIT+DSD+ FG + V
Sbjct: 129 MAHKVIKAARAL---GVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILK 185
Query: 376 FFDKKSHVLRYTAPDIRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
D+ + L + +L T EK + +L G DY L+G+G A ++L
Sbjct: 186 M-DQFGNGLEVDQARLGMCKQLGDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRL 244
Query: 432 FSPSDSPNQNYIVESMRRFKNWLAKKN--KPDTHLTRKLR 469
+++P+ IV+ +++ ++L K N P+ ++T +R
Sbjct: 245 ---ANNPD---IVKVIKKIGHYL-KMNITVPEDYITGFIR 277
Score = 50 (22.7 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL + ++ + +PV V+ + + +AV
Sbjct: 1 MGIQGLLQFIKEASEPVNVKKYKGQAVAV 29
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 135 (52.6 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 46/159 (28%), Positives = 80/159 (50%)
Query: 316 VSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 375
++ K+++A L GV +VAP EA+AQ A L Q VIT+DSD+ FG + V
Sbjct: 129 MAHKVIKAARAL---GVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILK 185
Query: 376 FFDKKSHVLRYTAPDIRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEILAK 431
D+ + L + +L T EK + +L G DY L+G+G A ++L
Sbjct: 186 M-DQFGNGLEVDQARLGMCKQLGDVFTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRL 244
Query: 432 FSPSDSPNQNYIVESMRRFKNWLAKK-NKPDTHLTRKLR 469
+++P+ IV+ +++ ++L P+ ++T +R
Sbjct: 245 ---ANNPD---IVKVIKKIGHYLRMNITVPEDYITGFIR 277
Score = 51 (23.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL + ++ + +PV V+ + + +AV
Sbjct: 1 MGIQGLLQFIQEASEPVNVKKYKGQAVAV 29
>ASPGD|ASPL0000033989 [details] [associations]
symbol:AN3035 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
EMBL:BN001306 EMBL:AACD01000051 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_660639.1
ProteinModelPortal:Q5B8U5 STRING:Q5B8U5
EnsemblFungi:CADANIAT00010044 GeneID:2874467 KEGG:ani:AN3035.2
HOGENOM:HOG000196065 OMA:KTAYRSI Uniprot:Q5B8U5
Length = 761
Score = 134 (52.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 36/124 (29%), Positives = 64/124 (51%)
Query: 314 PYVSRKMLEAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVY 373
P ++R+++E EL +L + ++VAP EA+AQ LE G+I++DSD+ +FGA+ +
Sbjct: 127 PLMARQLIE--ELKKL-DIQYVVAPYEADAQLVYLEKHGFIDGIISEDSDLLVFGAKRLL 183
Query: 374 KNFFDKKSHVLRYTAPDIRYYFEL-----TREKLIQLALLVGSDYTPGLQGVGPVTALEI 428
D+ ++ D E+ T ++ ++ G DY P + VG TA
Sbjct: 184 SKL-DQHGELIEINRADFTACREVSFVGWTDADFRRMCIMSGCDYLPNIARVGLKTAYRS 242
Query: 429 LAKF 432
+ K+
Sbjct: 243 IRKY 246
Score = 46 (21.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGIL-YFTQGRASALLD 153
MG+ GL LL++ KP ++ + L V + +G + +D
Sbjct: 1 MGIKGLHGLLKSIQKPCHLKKFSGQTLGVDAYGWLHRGTVACAVD 45
>POMBASE|SPAC12G12.16c [details] [associations]
symbol:SPAC12G12.16c "Fen1 family nuclease, XP-G
family (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=ISM] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006281
"DNA repair" evidence=ISM] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC12G12.16c GO:GO:0005737
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004519 GO:GO:0004518 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 PIR:T37913 RefSeq:NP_592882.1
ProteinModelPortal:Q09708 EnsemblFungi:SPAC12G12.16c.1
GeneID:2543216 KEGG:spo:SPAC12G12.16c OrthoDB:EOG4VT96S
NextBio:20804238 Uniprot:Q09708
Length = 496
Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 41/130 (31%), Positives = 67/130 (51%)
Query: 309 DK-KRRPY--VSRKMLEAQELLQLFGVPFIVAP-G-EAEAQCASLELGNHTQGVITDDSD 363
DK +RR Y + + E E+L++ G+P +P G EAEA +++ N V T D+D
Sbjct: 264 DKLERRLYRPSPQNIFEIFEILKILGIPASFSPIGVEAEAFASAISQNNLAYAVATQDTD 323
Query: 364 IWLFGARTVYKNFFDKKS--HV-LRYTAP-DIRYYFELTREKLIQLALLVGSDYTPGLQG 419
+ L G+ + NF D H+ L+ P I LT + L+ G+D+T +
Sbjct: 324 VLLLGSSMI-SNFLDLNDNFHLPLQIMDPRKIAQELNLTFDGFQDYCLMCGTDFTSRIPK 382
Query: 420 VGPVTALEIL 429
+GPV AL+++
Sbjct: 383 IGPVRALKLI 392
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 125 (49.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 35/103 (33%), Positives = 51/103 (49%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
GV +VAP EA+AQ A L Q +IT+DSD+ FG + V D+ + L
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKM-DQFGNGLEIDQAR 199
Query: 391 IRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ +L T EK + +L G DY L+G+G A ++L
Sbjct: 200 LGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVL 242
Score = 53 (23.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG++GL + ++ + +P+ V + +V+AV
Sbjct: 1 MGIHGLLQFIKEASEPIHVRKYKGQVVAV 29
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 126 (49.4 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 43/145 (29%), Positives = 73/145 (50%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
GV +VAP EA+AQ A L Q +IT+DSD+ FG + V D+ + L
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKM-DQFGNGLEIDQAR 199
Query: 391 IRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
+ +L T EK + +L G DY L+G+G A ++L +++P+ IV+
Sbjct: 200 LGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRL---ANNPD---IVKV 253
Query: 447 MRRFKNWLAKKN--KPDTHLTRKLR 469
+++ ++L K N P+ ++ +R
Sbjct: 254 IKKIGHYL-KMNITVPEDYINGFIR 277
Score = 52 (23.4 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL + ++ + +P+ V + +V+AV
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAV 29
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 125 (49.1 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
GV +VAP EA+AQ A L Q VIT+DSD+ FG + V D+ + L
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKM-DQFGNGLEVDQAR 199
Query: 391 IRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ +L T EK + +L G DY L+G+G A ++L
Sbjct: 200 LGMCKQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKLL 242
Score = 52 (23.4 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG++GL + ++ + +P+ + + +V+AV
Sbjct: 1 MGIHGLLQFIKEASEPIHIRKYKGQVVAV 29
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 124 (48.7 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 35/103 (33%), Positives = 51/103 (49%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
GV +VAP EA+AQ A L Q +IT+DSD+ FG + V D+ + L
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKM-DQFGNGLEVDQAR 199
Query: 391 IRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ +L T EK + +L G DY L+G+G A ++L
Sbjct: 200 LGKCKQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVL 242
Score = 53 (23.7 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL + ++ + +PV V + +V+AV
Sbjct: 1 MGIQGLLQFIKEASEPVHVRKYKGQVVAV 29
>DICTYBASE|DDB_G0291570 [details] [associations]
symbol:exo1 "5'3'-exonuclease N- and
I-domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019734 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0291570 GO:GO:0005634
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0004519
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_635308.1 ProteinModelPortal:Q54ED2
EnsemblProtists:DDB0232997 GeneID:8628252 KEGG:ddi:DDB_G0291570
OMA:KSQANIC Uniprot:Q54ED2
Length = 1046
Score = 133 (51.9 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 36/111 (32%), Positives = 56/111 (50%)
Query: 327 LQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA-RTVYKNFFDKKSHVLR 385
L+ V ++VAP EA+AQ L + +IT+DSD+ FGA ++K DK +
Sbjct: 137 LRALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSDLVAFGATHIIFK--MDKYGYAQE 194
Query: 386 YTAPDIR------YYF-ELTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
D+ Y F + + L Q+ +L G DY P L G+G T+ ++L
Sbjct: 195 IKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLL 245
Score = 45 (20.9 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV-GILYFTQGRAS 149
MG++GL L K + V+ NK +A+ G + +G S
Sbjct: 1 MGISGLLPALSPVTKAIHVKDYANKRVAIDGYSWLHKGAYS 41
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 129 (50.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 39/124 (31%), Positives = 62/124 (50%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
GV IVAP EA+AQ A L Q +IT+DSD+ FG + V+ DK + L
Sbjct: 141 GVDCIVAPYEADAQLAYLNKTGVVQAIITEDSDLLAFGCKKVFLKI-DKFGNGLEIDQAR 199
Query: 391 IRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
+ +L T EK + +L G DY + G+G A ++L K + ++P+ +++
Sbjct: 200 LGNCKQLGNIFTEEKFRYMCILSGCDYLSSIHGIGLAKACKLL-KLA--NNPDIIKVIKK 256
Query: 447 MRRF 450
M +
Sbjct: 257 MGHY 260
Score = 45 (20.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL + ++ + +P V+ + +AV
Sbjct: 1 MGIQGLLQFIKEAAEPAHVKKYRGQAVAV 29
>UNIPROTKB|I3LHP7 [details] [associations]
symbol:I3LHP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:CU469267
Ensembl:ENSSSCT00000025898 Uniprot:I3LHP7
Length = 159
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLWKLLE SG+ V ETLE K+LAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRQVNPETLEGKILAVDISIWLNQALKGVRDR 45
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 128 (50.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 39/124 (31%), Positives = 62/124 (50%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 390
GV +VAP EA+AQ A L + Q VIT+DSD+ FG + V DK+ + L
Sbjct: 141 GVDCVVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGCKKVILKM-DKQGNGLEIEQCH 199
Query: 391 IRYYFEL----TREKLIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSDSPNQNYIVES 446
+ L T EK + +L G DY L G+G A ++L +++P+ +++
Sbjct: 200 LGRCKSLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLRM---ANNPDILKVIKK 256
Query: 447 MRRF 450
M ++
Sbjct: 257 MGQY 260
Score = 45 (20.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL + ++ + +P+ V+ + +AV
Sbjct: 1 MGIQGLLQFIKDASEPMHVKKYRGQTVAV 29
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 125 (49.1 bits), Expect = 0.00023, P = 0.00023
Identities = 38/111 (34%), Positives = 53/111 (47%)
Query: 332 VPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV-YKNFFDKKSHVLRYTAPD 390
V IVAP EA+AQ A L + Q +IT+DSD+ LFGA+ + +K D L A
Sbjct: 142 VDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGAKNIIFK--LDLNGSGLLVEAEK 199
Query: 391 IRYYFELTREK-----LIQLALLVGSDYTPGLQGVGPVTALEILAKFSPSD 436
+ T EK ++ +L G DY L G+G A + + K D
Sbjct: 200 LHLAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKACKFILKTEQED 250
>RGD|1586176 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent repair
deficiency, complementation group 5" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008340 "determination of
adult lifespan" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0009650 "UV protection" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 RGD:1586176
GO:GO:0005634 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
GO:GO:0006289 PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
IPI:IPI00357888 Ensembl:ENSRNOT00000014836 UCSC:RGD:1586176
ArrayExpress:D4A7R1 Uniprot:D4A7R1
Length = 242
Score = 115 (45.5 bits), Expect = 0.00042, P = 0.00041
Identities = 25/45 (55%), Positives = 28/45 (62%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAVGILYFTQGRASALLDR 154
MGV GLWKLLE SG+PV E LE KVLAV I + + DR
Sbjct: 1 MGVQGLWKLLECSGRPVSPEALEGKVLAVDISIWLNQALKGVRDR 45
>TAIR|locus:2194085 [details] [associations]
symbol:AT1G18090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746
UniGene:At.48205 UniGene:At.70260 EMBL:AY050420 EMBL:AY113038
IPI:IPI00541706 RefSeq:NP_564047.1 ProteinModelPortal:Q94A33
SMR:Q94A33 PaxDb:Q94A33 PRIDE:Q94A33 EnsemblPlants:AT1G18090.1
GeneID:838389 KEGG:ath:AT1G18090 TAIR:At1g18090
HOGENOM:HOG000131774 InParanoid:Q94A33 OMA:ETFETTE
ProtClustDB:CLSN2687850 Genevestigator:Q94A33 Uniprot:Q94A33
Length = 577
Score = 119 (46.9 bits), Expect = 0.00074, P = 0.00074
Identities = 41/123 (33%), Positives = 65/123 (52%)
Query: 323 AQELLQLF---GVPFIVAPGEAEAQCA---SLELGNH-TQGVITDDSDIWLFGARTV-YK 374
A +L+Q+ V FIVAP EA+AQ A SLEL VIT+DSD+ +G + V +K
Sbjct: 133 AHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSDLLAYGCKAVIFK 192
Query: 375 -NFFDKKSHVLR---YTAPDIRYYFE-LTREKLIQLALLVGSDYTPGLQGVGPVTALEIL 429
+ + K ++ + A D + F+ +E + +L G D+ P + GVG A +
Sbjct: 193 MDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSVPGVGISRAHAFI 252
Query: 430 AKF 432
+K+
Sbjct: 253 SKY 255
>UNIPROTKB|Q5T398 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR019974 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00484 SMART:SM00485
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
EMBL:AL365366 UniGene:Hs.498248 HGNC:HGNC:3511 HOGENOM:HOG000264445
IPI:IPI00644243 SMR:Q5T398 STRING:Q5T398 Ensembl:ENST00000437497
Uniprot:Q5T398
Length = 166
Score = 92 (37.4 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 331 GVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 372
GV +VAP EA+AQ A L Q +IT+DSD+ FG + V
Sbjct: 98 GVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKV 139
Score = 52 (23.4 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 110 MGVNGLWKLLEASGKPVPVETLENKVLAV 138
MG+ GL + ++ + +P+ V + +V+AV
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAV 29
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 538 491 0.00082 119 3 11 22 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 83
No. of states in DFA: 617 (66 KB)
Total size of DFA: 266 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 41.06u 0.08s 41.14t Elapsed: 00:00:19
Total cpu time: 41.08u 0.08s 41.16t Elapsed: 00:00:20
Start: Thu Aug 15 11:27:01 2013 End: Thu Aug 15 11:27:21 2013