BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14294
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus
laevis GN=ercc5 PE=2 SV=1
Length = 1196
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 64/82 (78%)
Query: 229 RLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
R+A+T+T QM E+QELLQLFG+P+IVAP EAEAQCA L+L + T G ITDDSDIWLFGA
Sbjct: 792 RIAATVTGQMCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGA 851
Query: 289 RTVYKNFFDKKSHVLRYTAPDI 310
R VYKNFF + HV Y DI
Sbjct: 852 RHVYKNFFSQNKHVEYYQYADI 873
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G ++ NAHL+ L+HR+CKLLFF+I+P+FVFDG P LK+Q
Sbjct: 27 LAVDISIWLNQAVKGARDRQGNAIQNAHLLTLFHRLCKLLFFRIRPIFVFDGEAPLLKRQ 86
Query: 209 TISTLEKDRDQ 219
T++ + D+
Sbjct: 87 TLAKRRQRTDK 97
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 1 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMA---LPPPS-VSREV--DMF 54
A+R+ KA+++A K LL+ L++Q + L N+ + LP S V R+ D++
Sbjct: 89 AKRRQRTDKASNDARKTNEKLLRTFLKRQAIKAALSGNKQSNEELPSFSQVPRKETEDLY 148
Query: 55 ELPP---APAQTVQDEEEDSDSDDTEAKFR-----YADLHSVDINSEQFSALPPDMRHEI 106
LPP + ++EEE + K R +A+ SVDI SE+F +LPP+++HEI
Sbjct: 149 ILPPLEDNENNSSEEEEEREWEERMNQKQRLQEDFFANPSSVDIESEEFKSLPPEVKHEI 208
Query: 107 LTEL 110
LT++
Sbjct: 209 LTDM 212
>sp|P35689|ERCC5_MOUSE DNA repair protein complementing XP-G cells homolog OS=Mus musculus
GN=Ercc5 PE=1 SV=4
Length = 1170
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 71/95 (74%)
Query: 211 STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 270
S L +++ L ++ +Q R+A+++T QM E+QELL+LFGVP+I AP EAEAQCA L+L
Sbjct: 740 SNLLAEQNSLKAQKQQQDRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLT 799
Query: 271 NHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 305
+ T G ITDDSDIWLFGAR VYKNFF+K V Y
Sbjct: 800 DQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYY 834
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G + NAHL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALKGVRDSHGNVIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQT 228
T++ + +D ++ K T
Sbjct: 87 TLAKRRQRKDSASIDSRKTT 106
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 1 AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMALPPP--SVSREVDMFELPP 58
A+R+ K A+ ++ K LLK L++Q L + PP V R+ D++ LPP
Sbjct: 89 AKRRQRKDSASIDSRKTTEKLLKTFLKRQALKTAFRSSRHEAPPSLTQVQRQDDIYVLPP 148
Query: 59 APAQTVQD------EEEDSDSDDTEA---KFRYADLHSVDINSEQFSALPPDMRHEILTE 109
P + ++ + D +A +F + + ++DI SE FS+LPP+++HEILT+
Sbjct: 149 LPEEEKHSSEEEDEKQWQARMDQKQALQEEF-FHNPQAIDIESEDFSSLPPEVKHEILTD 207
Query: 110 LLE--QRKLSSWHKMHE 124
+ E +R+ + + M E
Sbjct: 208 MKEFTKRRRTLFEAMPE 224
>sp|P28715|ERCC5_HUMAN DNA repair protein complementing XP-G cells OS=Homo sapiens
GN=ERCC5 PE=1 SV=3
Length = 1186
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 70/95 (73%)
Query: 211 STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 270
S L ++ L ++ +Q R+A+T+T QM E+QELL+LFG+P+I AP EAEAQCA L+L
Sbjct: 741 SNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLT 800
Query: 271 NHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 305
+ T G ITDDSDIWLFGAR VY+NFF+K V Y
Sbjct: 801 DQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYY 835
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G S+ N HL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALKGVRDRHGNSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRD 218
T+ + +D
Sbjct: 87 TLVKRRQRKD 96
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 14/136 (10%)
Query: 2 QRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVL-GKNEMALPP-PSVSREVDMFELPPA 59
+R+ K A+S++ K LLK L++Q + K + ALP V RE D++ LPP
Sbjct: 90 KRRQRKDLASSDSRKTTEKLLKTFLKRQAIKTAFRSKRDEALPSLTQVRRENDLYVLPPL 149
Query: 60 PAQTVQDEEED---------SDSDDTEAKFRYADLHSVDINSEQFSALPPDMRHEILTEL 110
+ EE+ + + +F + + ++DI SE FS+LPP+++HEILT++
Sbjct: 150 QEEEKHSSEEEDEKEWQERMNQKQALQEEF-FHNPQAIDIESEDFSSLPPEVKHEILTDM 208
Query: 111 LE--QRKLSSWHKMHE 124
E +R+ + + M E
Sbjct: 209 KEFTKRRRTLFEAMPE 224
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
Length = 1479
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 72/104 (69%)
Query: 207 KQTISTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCAS 266
++ I L+++ L E+ K R A +++ +M E QELLQ+FG+P+I+AP EAEAQCA
Sbjct: 894 EEEIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAF 953
Query: 267 LELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310
+E N G++TDDSD++LFGAR+VYKN FD + +V Y DI
Sbjct: 954 MEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDI 997
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D SIW+ Q K D G V NAHLIG + RICKLLF + KP+FVFDG P LK++
Sbjct: 27 LAIDASIWMVQFIKAMRDEKGDMVQNAHLIGFFRRICKLLFLRTKPIFVFDGATPALKRR 86
Query: 209 TI-----------STLEKDRDQLLLERGKQTRL 230
T+ + + K ++LLL R K RL
Sbjct: 87 TVIARRRQRENAQTKIRKTAEKLLLNRLKDIRL 119
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2
Length = 908
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS 211
D+S+W+ + T GSV HL L+ RI L +K VFV +G P+LK IS
Sbjct: 30 DLSLWVCEAQ--TVKKMMGSVMKPHLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVIS 87
Query: 212 TLEKDRDQLLLERGKQ--TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 269
+ R GK + + + + RE +L+ G+P++ A GEAEA CA L
Sbjct: 88 KRNQSR---YGSSGKSWSQKTGRSHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNA 144
Query: 270 GNHTQGVITDDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDIR 311
G H G +T+D D +L+GA+TVY+NF K HV YT I+
Sbjct: 145 GGHVDGCLTNDGDTFLYGAQTVYRNFTMNTKDPHVDCYTMSSIK 188
>sp|B4J6M4|FEN1_DROGR Flap endonuclease 1 OS=Drosophila grimshawi GN=Fen1 PE=3 SV=1
Length = 388
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G A P +HL+G+++R +LL IKPV+VFDG P +K
Sbjct: 34 DASMCLYQFLIAVRSEGAQLAAVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGAPPDMK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + RD+ E G K R +T++ SREA+ELL+L GVP++
Sbjct: 94 SGELAKRAERRDEAEKALKAATEAGDEAQIEKFNRRLVRVTKEHSREAKELLKLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2
Length = 908
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 5/162 (3%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS 211
D+S+W+ + T G+V HL L+ RI L +K VFV +G P LK IS
Sbjct: 30 DLSLWVCEAQ--TVKKMIGTVKKPHLRNLFFRISYLTQMNVKLVFVMEGEPPMLKADVIS 87
Query: 212 TLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGN 271
+ R + + + + + + RE E+L+ G+P++ A GEAEA CA L
Sbjct: 88 KRTQTR-YGPSGKSRSQKTGRSHFKSVLRECLEMLECLGMPWVQAAGEAEAMCAYLNASG 146
Query: 272 HTQGVITDDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDIR 311
H G +T+D D +L+GA+TVY+NF K HV YT I+
Sbjct: 147 HVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCYTISSIK 188
>sp|P07276|RAD2_YEAST DNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD2 PE=1 SV=2
Length = 1031
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 60/93 (64%)
Query: 218 DQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVI 277
D+L ++ K R + +T M +E QELL FG+P+I AP EAEAQCA L N G+I
Sbjct: 751 DELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGII 810
Query: 278 TDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310
TDDSD++LFG +YKN F +K++V Y A I
Sbjct: 811 TDDSDVFLFGGTKIYKNMFHEKNYVEFYDAESI 843
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS 211
D SIW++Q K D G +V N+H+ G + RICKLL+F I+PVFVFDGGVP LK++TI
Sbjct: 30 DASIWIYQFLKAVRDQEGNAVKNSHITGFFRRICKLLYFGIRPVFVFDGGVPVLKRETIR 89
Query: 212 TLEKDRDQLLLERGKQT 228
K+R Q E K T
Sbjct: 90 Q-RKERRQGKRESAKST 105
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica
GN=SEND1 PE=2 SV=1
Length = 641
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQT-- 209
D+S WL Q+ A +L L+HRI LL +FV DG +P LK T
Sbjct: 30 DLSCWLVQMYSANRSPAFAK-DKVYLKNLFHRIRALLALNCTLLFVTDGAIPSLKLATYR 88
Query: 210 -----ISTLEKDRDQ------LLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPG 258
IS K+ DQ + L R K + + I +EA+ L G+P +
Sbjct: 89 RRLGSISHAAKESDQPNSHPSISLRRNKGSEFSCMI-----KEAKRLGMALGIPCLDGLE 143
Query: 259 EAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN-FFDKKSHVLRYTAPDI 310
EAEAQCASL+L + G T DSD +LFGARTVY++ F + +V+ Y DI
Sbjct: 144 EAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDVFIGEGGYVICYEMEDI 196
>sp|B4LM90|FEN1_DROVI Flap endonuclease 1 OS=Drosophila virilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGQPPDLK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ E G K R +T++ SREA+ELL+L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATEAGDEAEIDKFNRRLVRVTKEHSREAKELLKLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|B3MDA3|FEN1_DROAN Flap endonuclease 1 OS=Drosophila ananassae GN=Fen1 PE=3 SV=1
Length = 388
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ E G K R +T++ +REA+ELL+L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATEAGDDAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 EAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad13 PE=2 SV=2
Length = 1112
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 64/103 (62%)
Query: 212 TLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGN 271
EK +L ++ + R A +T+ M +E QELL+LFG+P+IVAP EAEAQC+ L
Sbjct: 730 AFEKRLKELKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELK 789
Query: 272 HTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYF 314
G++TDDSD++LFG VY+N F++ V Y D++ F
Sbjct: 790 LVDGIVTDDSDVFLFGGTRVYRNMFNQNKFVELYLMDDMKREF 832
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 137 RCNIVINKLLVDLISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVF 196
+ ++NK L D SIW++Q K D G + ++H++G + RICKLLFF IKPVF
Sbjct: 18 KLETLVNKRLA---IDASIWIYQFLKAVRDKEGNQLKSSHVVGFFRRICKLLFFGIKPVF 74
Query: 197 VFDGGVPQLKKQTI 210
VFDGG P LK+QTI
Sbjct: 75 VFDGGAPSLKRQTI 88
>sp|A8B672|FEN1_GIAIC Flap endonuclease 1 OS=Giardia intestinalis (strain ATCC 50803 / WB
clone C6) GN=FEN1 PE=3 SV=1
Length = 361
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 31/191 (16%)
Query: 126 PQNDQHSMLEFRCNIVINKLLVDLISDVSIWLHQLTKGTHDLAGGSVPNA------HLIG 179
P +++ CN VI D S+ L+Q G ++ N+ HL+G
Sbjct: 15 PAAVSKRLIQHYCNKVI-------AIDASVMLYQFITTITSGDGTALANSSGEVTSHLVG 67
Query: 180 LYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDR--------------DQLLLERG 225
L ++ +L IKP+FVFDG P+ K+ LEK R ++ LER
Sbjct: 68 LLAKVIRLAEAGIKPIFVFDGKPPEDKQ---GELEKRRQAREAAELEQQKAEEEGNLERA 124
Query: 226 KQ-TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIW 284
KQ +R +T+Q ++A+ LL G+P++VA GEAEAQC ++ +GV + D D+
Sbjct: 125 KQLSRRTVKVTQQHCKQAERLLDTLGIPYVVAAGEAEAQCVAMAKERVCEGVASSDLDVL 184
Query: 285 LFGARTVYKNF 295
FG+ + +N
Sbjct: 185 AFGSPCLIRNL 195
>sp|B4MR84|FEN1_DROWI Flap endonuclease 1 OS=Drosophila willistoni GN=Fen1 PE=3 SV=1
Length = 388
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 28/171 (16%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ E G K R +T++ +REA+ELL+L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATEAGDEAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 305
AP EAEAQCA+L T+D D FG+ S +LRY
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS-----------SKLLRY 193
>sp|Q178M1|FEN1_AEDAE Flap endonuclease 1 OS=Aedes aegypti GN=Fen1 PE=3 SV=1
Length = 380
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q +G + +HL+G ++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRAEGAQLTSVDGETTSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQLLLERGKQTRLAST------------ITEQMSREAQELLQLFGVPFI 254
++ + R++ K T T +T+Q S EA+ELL+L GVP++
Sbjct: 94 SGELTKRAEKREEAQKALDKATEAGVTEDIDKFNRRLVKVTKQHSNEAKELLKLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
AP EAEAQCA+L G T+D D FG+ + ++
Sbjct: 154 DAPCEAEAQCAALVKGGKVYATATEDMDALTFGSNILLRHL 194
>sp|B5DUR8|FEN1_DROPS Flap endonuclease 1 OS=Drosophila pseudoobscura pseudoobscura
GN=Fen1 PE=3 SV=1
Length = 386
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQLL------------LERGKQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ E K R +T++ +REA+ELL L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATDAGDDAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|B4GIM3|FEN1_DROPE Flap endonuclease 1 OS=Drosophila persimilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQLL------------LERGKQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ E K R +T++ +REA+ELL L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATDAGDDAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|B4KNM1|FEN1_DROMO Flap endonuclease 1 OS=Drosophila mojavensis GN=Fen1 PE=3 SV=1
Length = 388
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQ------LLLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ + + G K R +T++ S EA+ELL+L GVP++
Sbjct: 94 AGELAKRAERREEAEKALKVATDAGDEAEIEKFNRRLVRVTKEHSNEAKELLKLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|B3NP61|FEN1_DROER Flap endonuclease 1 OS=Drosophila erecta GN=Fen1 PE=3 SV=1
Length = 387
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ + G K R +T++ ++EA+ELL L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|A3FPN7|FEN1_CRYPI Flap endonuclease 1 OS=Cryptosporidium parvum (strain Iowa II)
GN=FEN1 PE=3 SV=1
Length = 490
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 20/177 (11%)
Query: 152 DVSIWLHQLTKGTHDLAG-GSVPNA------HLIGLYHRICKLLFFKIKPVFVFDGGVPQ 204
D S+W++Q + + G++ N+ H+ G+ R +LL IKPVFVFDG P+
Sbjct: 34 DASMWIYQFLAAIREGSQWGNLTNSSGESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPE 93
Query: 205 LKKQTISTLEKDRDQLL--LERG----------KQTRLASTITEQMSREAQELLQLFGVP 252
+KK ++ ++ R++ L LE+ KQ+ +T++ + ++LL G+P
Sbjct: 94 MKKDELTKRDERREKALAELEKAQEIGDEELIKKQSVRTIHVTKKQVEDVKKLLGFLGMP 153
Query: 253 FIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKKSHVLRYTAP 308
I AP EAEAQCA L GV+T+D+D FG K F + S+ + +P
Sbjct: 154 CIDAPSEAEAQCAELCKDGLVYGVVTEDADSLTFGTPIQIKQLNFSESSNKITDKSP 210
>sp|B4QIG6|FEN1_DROSI Flap endonuclease 1 OS=Drosophila simulans GN=Fen1 PE=3 SV=1
Length = 385
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ + G K R +T++ ++EA+ELL L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|A4VDN2|FEN1_TETTS Flap endonuclease 1 OS=Tetrahymena thermophila (strain SB210)
GN=FEN1 PE=3 SV=1
Length = 384
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPN---------AHLIGLYHRICKLLFFKIKPVFVFD 199
+ D S+ ++Q T + + N HL+GL +R L+ +KPV+VFD
Sbjct: 31 IACDASMAMYQFLATTSSASDFQIQNLTDKDGNKTGHLVGLLNRTVMLIENGLKPVWVFD 90
Query: 200 GGVPQLKKQTISTLEKDRDQ------LLLERG------KQTRLASTITEQMSREAQELLQ 247
G PQ K ++ +K +D+ +E G KQ + IT++M +A +LLQ
Sbjct: 91 GKPPQFKSGELARRQKAKDEAAEKQKTAIETGDMQEALKQEQRNLHITKEMKADAIKLLQ 150
Query: 248 LFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHV 302
L GVP I+AP EAEAQCA+L +T+D D F + +N KK +
Sbjct: 151 LVGVPVILAPCEAEAQCAALAKAKKVFATVTEDMDALTFATPFLLRNLNSKKEPI 205
>sp|B4HTA1|FEN1_DROSE Flap endonuclease 1 OS=Drosophila sechellia GN=Fen1 PE=3 SV=1
Length = 385
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ + G K R +T++ ++EA+ELL L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|Q7K7A9|FEN1_DROME Flap endonuclease 1 OS=Drosophila melanogaster GN=Fen1 PE=2 SV=1
Length = 385
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ + G K R +T++ ++EA+ELL L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|B4P5U9|FEN1_DROYA Flap endonuclease 1 OS=Drosophila yakuba GN=Fen1 PE=3 SV=1
Length = 387
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q ++G P +HL+G+++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQL------LLERG------KQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R++ + G K R +T++ + EA+ELL L GVP++
Sbjct: 94 SGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHANEAKELLTLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
AP EAEAQCA+L T+D D FG+
Sbjct: 154 DAPCEAEAQCAALVKAGKVYATATEDMDALTFGS 187
>sp|Q9HJD4|FEN_THEAC Flap endonuclease 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=fen
PE=3 SV=1
Length = 336
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 14/133 (10%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTL----EKDRDQL--LLERGKQ- 227
+HL G+++R LL +I+PV+VFDG LK +TIS EK + +L +ERG++
Sbjct: 56 SHLYGIFYRTINLLENRIRPVYVFDGKPSPLKNRTISERQMMKEKAKAELEEAIERGEED 115
Query: 228 -----TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
+R+ + IT Q+ + ++LL G+P++ AP E EAQ + + N GVI+ D D
Sbjct: 116 LRQYYSRI-NYITPQIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKN-VDGVISQDYD 173
Query: 283 IWLFGARTVYKNF 295
LFGAR + +NF
Sbjct: 174 CLLFGARKILRNF 186
>sp|C6TEX6|FEN1_SOYBN Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1
Length = 382
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 23/181 (12%)
Query: 152 DVSIWLHQL-----TKGTHDLA--GGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQ 204
D S+ ++Q GT L G V +HL G++ R +LL IKPV+VFDG P
Sbjct: 34 DASMSIYQFLIVVGRSGTEMLTNEAGEV-TSHLQGMFSRTIRLLEAGIKPVYVFDGKPPD 92
Query: 205 LKKQTISTLEKDRDQLL------LERG------KQTRLASTITEQMSREAQELLQLFGVP 252
LKKQ ++ R + LE K ++ +T+Q + + + LL+L GVP
Sbjct: 93 LKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152
Query: 253 FIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD---KKSHVLRYTAPD 309
+ AP EAEAQCA+L GV+++D D FGA ++ D KK V+ +
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYGVVSEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAK 212
Query: 310 I 310
I
Sbjct: 213 I 213
>sp|Q9SXQ6|FEN11_ORYSJ Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a
PE=2 SV=1
Length = 380
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 174 NAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLL------LERG-- 225
+HL G+++R +LL IKPV+VFDG P LKKQ ++ R+ +E G
Sbjct: 62 TSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGDK 121
Query: 226 ----KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 281
K ++ +T+Q + E + LL+L GVP + AP EAEA+CA+L + + V ++D
Sbjct: 122 DAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDM 181
Query: 282 DIWLFGARTVYKNFFDKKS 300
D FGA ++ D S
Sbjct: 182 DSLTFGAPRFLRHLMDPSS 200
>sp|B8AW67|FEN11_ORYSI Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3
SV=1
Length = 380
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 174 NAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLL------LERG-- 225
+HL G+++R +LL IKPV+VFDG P LKKQ ++ R+ +E G
Sbjct: 62 TSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGDK 121
Query: 226 ----KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 281
K ++ +T+Q + E + LL+L GVP + AP EAEA+CA+L + + V ++D
Sbjct: 122 DAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDM 181
Query: 282 DIWLFGARTVYKNFFDKKS 300
D FGA ++ D S
Sbjct: 182 DSLTFGAPRFLRHLMDPSS 200
>sp|Q6L2I9|FEN_PICTO Flap endonuclease 1 OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=fen PE=3 SV=1
Length = 338
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 14/134 (10%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS--TLEKDRDQLLLE--------- 223
+HL G+++R LL IKPV+VFDG LK +T+ +L K+++ + LE
Sbjct: 56 SHLSGIFYRTSNLLENNIKPVYVFDGKPFHLKSETLRERSLIKEKNIMKLEEAIASNDDA 115
Query: 224 --RGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 281
R +R+ + IT+ + E++ LL L G+P++ AP E EAQ + + L V++ D
Sbjct: 116 KIRSLSSRI-NYITDDIVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDY 174
Query: 282 DIWLFGARTVYKNF 295
D LFGA+ + +NF
Sbjct: 175 DCLLFGAKRILRNF 188
>sp|B3LQY3|FEN1_YEAS1 Flap endonuclease 1 OS=Saccharomyces cerevisiae (strain RM11-1a)
GN=RAD27 PE=3 SV=1
Length = 382
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPN------AHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D S+ L+Q GG + N +HL+G+++R +++ IKP +VFDG P L
Sbjct: 34 DASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDL 93
Query: 206 KKQTISTLEKDRDQLL---------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVA 256
K ++ R + LE+ KQ R ++++ + EAQ+LL L G+P+I+A
Sbjct: 94 KSHELTKRSSRRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIA 153
Query: 257 PGEAEAQCASLELGNHTQGVITDDSDIWLF 286
P EAEAQCA L ++D D +
Sbjct: 154 PTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
>sp|P26793|FEN1_YEAST Flap endonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=RAD27 PE=1 SV=1
Length = 382
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPN------AHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D S+ L+Q GG + N +HL+G+++R +++ IKP +VFDG P L
Sbjct: 34 DASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDL 93
Query: 206 KKQTISTLEKDRDQLL---------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVA 256
K ++ R + LE+ KQ R ++++ + EAQ+LL L G+P+I+A
Sbjct: 94 KSHELTKRSSRRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIA 153
Query: 257 PGEAEAQCASLELGNHTQGVITDDSDIWLF 286
P EAEAQCA L ++D D +
Sbjct: 154 PTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
>sp|C8ZC62|FEN1_YEAS8 Flap endonuclease 1 OS=Saccharomyces cerevisiae (strain Lalvin
EC1118 / Prise de mousse) GN=RAD27 PE=3 SV=1
Length = 382
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPN------AHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D S+ L+Q GG + N +HL+G+++R +++ IKP +VFDG P L
Sbjct: 34 DASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDL 93
Query: 206 KKQTISTLEKDRDQLL---------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVA 256
K ++ R + LE+ KQ R ++++ + EAQ+LL L G+P+I+A
Sbjct: 94 KSHELTKRSSRRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIA 153
Query: 257 PGEAEAQCASLELGNHTQGVITDDSDIWLF 286
P EAEAQCA L ++D D +
Sbjct: 154 PTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
>sp|A6ZZK4|FEN1_YEAS7 Flap endonuclease 1 OS=Saccharomyces cerevisiae (strain YJM789)
GN=RAD27 PE=3 SV=1
Length = 382
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPN------AHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D S+ L+Q GG + N +HL+G+++R +++ IKP +VFDG P L
Sbjct: 34 DASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDL 93
Query: 206 KKQTISTLEKDRDQLL---------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVA 256
K ++ R + LE+ KQ R ++++ + EAQ+LL L G+P+I+A
Sbjct: 94 KSHELTKRSSRRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIA 153
Query: 257 PGEAEAQCASLELGNHTQGVITDDSDIWLF 286
P EAEAQCA L ++D D +
Sbjct: 154 PTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
>sp|C7GVJ8|FEN1_YEAS2 Flap endonuclease 1 OS=Saccharomyces cerevisiae (strain JAY291)
GN=RAD27 PE=3 SV=1
Length = 382
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPN------AHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D S+ L+Q GG + N +HL+G+++R +++ IKP +VFDG P L
Sbjct: 34 DASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDL 93
Query: 206 KKQTISTLEKDRDQLL---------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVA 256
K ++ R + LE+ KQ R ++++ + EAQ+LL L G+P+I+A
Sbjct: 94 KSHELTKRSSRRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIA 153
Query: 257 PGEAEAQCASLELGNHTQGVITDDSDIWLF 286
P EAEAQCA L ++D D +
Sbjct: 154 PTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
>sp|Q7Q323|FEN1_ANOGA Flap endonuclease 1 OS=Anopheles gambiae GN=Fen1 PE=3 SV=2
Length = 383
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 17/161 (10%)
Query: 152 DVSIWLHQL-----TKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ L+Q +G + +HL+G ++R +LL IKPV+VFDG P LK
Sbjct: 34 DASMCLYQFLIAVRAEGAQLTSVDGETTSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLK 93
Query: 207 KQTISTLEKDRDQLLLERGKQTRLAST------------ITEQMSREAQELLQLFGVPFI 254
++ + R++ K T +T +T+ + EA+ELL+L GVP++
Sbjct: 94 SGELNKRAERREEAQKALDKATEAGATEDIEKFNRRLVKVTKHHANEAKELLRLMGVPYV 153
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
AP EAEAQCA+L T+D D FG+ + ++
Sbjct: 154 EAPCEAEAQCAALVRAGKVYATATEDMDALTFGSNILLRHL 194
>sp|B0EN90|FEN1_ENTDS Flap endonuclease 1 OS=Entamoeba dispar (strain ATCC PRA-260 /
SAW760) GN=FEN1 PE=3 SV=1
Length = 376
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 152 DVSIWLHQLTKGTHDLAGGSV------PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D SI ++Q D G ++ +H+IG ++R KL+ IKPV+VFDG P++
Sbjct: 34 DASILVYQFISAVRDTTGATMVDEFGETTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEM 93
Query: 206 KKQTIS----TLEKDRDQL--LLERG------KQTRLASTITEQMSREAQELLQLFGVPF 253
K ++ +K ++QL LE G K + + +T++ S E ++LLQL G+P
Sbjct: 94 KDGELNKRKENAQKAQEQLDKALEEGDKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPC 153
Query: 254 IVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDI 310
+ A EAE CA+L T+D D G+ V + F +KK + Y+ I
Sbjct: 154 VEANCEAEGTCAALVKAGKCYATATEDMDALTLGSEYVVRKFSASDNKKEPIREYSLSSI 213
>sp|Q7K734|FEN1_PLAF7 Flap endonuclease 1 OS=Plasmodium falciparum (isolate 3D7) GN=FEN1
PE=3 SV=1
Length = 672
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 140 IVINKLLVDLIS-DVSIWLHQLTKGTHDLAG-GSVPN------AHLIGLYHRICKLLFFK 191
I I L+ +I+ D S+ L+Q D G++ N +H+ GL R +L+
Sbjct: 21 IKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGNLTNESGETTSHISGLMSRSIRLMENG 80
Query: 192 IKPVFVFDGGVPQLKKQTIST-----------LEKDRDQLLLER-GKQTRLASTITEQMS 239
+KP++VFDG P+LK + L+K +++ LE KQ+ +T + +
Sbjct: 81 LKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTRKQN 140
Query: 240 REAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
EA++LL L G+P I AP EAE+QCA L N T+D+D +FG + + +N
Sbjct: 141 EEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNL 196
>sp|C5WU23|FEN12_SORBI Flap endonuclease 1-B OS=Sorghum bicolor GN=FEN1-B PE=3 SV=2
Length = 428
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 15/146 (10%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS--TLEKDRDQLLLERG------- 225
+HL G+ +R ++L IKPVFVFDG P++KK+ ++ +L++D L R
Sbjct: 90 SHLQGMLNRTVRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDATKDLNRAIEIGDED 149
Query: 226 ---KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
K ++ +T + + + + LL+L GVP + APGEAEAQCA+L + V ++D D
Sbjct: 150 AVEKFSKRTVKVTRKHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMD 209
Query: 283 IWLFGARTVYKNFFD---KKSHVLRY 305
FGAR ++ D KKS V +
Sbjct: 210 SLTFGARRFLRHLTDLGYKKSPVTEF 235
>sp|A8J2Z9|FEN1_CHLRE Flap endonuclease 1 OS=Chlamydomonas reinhardtii GN=FEN1 PE=3 SV=1
Length = 396
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 16/142 (11%)
Query: 174 NAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS-----------TLEKDR---DQ 219
+HL G++ R K+L IKPV+VFDG PQLK+ ++ LEK + DQ
Sbjct: 62 TSHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTERRADANEALEKAKEAGDQ 121
Query: 220 LLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITD 279
+E K ++ + +T + + E + LL+L GVP + AP EAEAQCA + G+ T+
Sbjct: 122 EAIE--KYSKRSVRVTREHNDECKRLLRLMGVPVVEAPTEAEAQCAEMAKSGLVYGLATE 179
Query: 280 DSDIWLFGARTVYKNFFDKKSH 301
D D FGA V ++ S
Sbjct: 180 DMDALTFGAPRVIRHLMAPSSQ 201
>sp|Q9GZ01|FEN1_PLAFA Flap endonuclease 1 OS=Plasmodium falciparum GN=FEN1 PE=2 SV=1
Length = 650
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 140 IVINKLLVDLIS-DVSIWLHQLTKGTHDLAG-GSVPN------AHLIGLYHRICKLLFFK 191
I I L+ +I+ D S+ L+Q D G++ N +H+ GL R +L+
Sbjct: 21 IKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGNLTNESGETTSHISGLMSRSIRLMENG 80
Query: 192 IKPVFVFDGGVPQLKKQTIST-----------LEKDRDQLLLER-GKQTRLASTITEQMS 239
+KP++VFDG P+LK + L+K +++ LE KQ+ +T + +
Sbjct: 81 LKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTRKQN 140
Query: 240 REAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
EA++LL L G+P I AP EAE+QCA L N T+D+D +FG + + +N
Sbjct: 141 EEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNL 196
>sp|B4FHY0|FEN1_MAIZE Flap endonuclease 1 OS=Zea mays GN=FEN1 PE=2 SV=1
Length = 379
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 174 NAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLL------LERG-- 225
+HL G+++R +LL IKPV+VFDG P +KKQ ++ RD +E G
Sbjct: 62 TSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVGDK 121
Query: 226 ----KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 281
K ++ +T Q + + + LL+L GVP + AP EAEA+CA+L + + V ++D
Sbjct: 122 DAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASEDM 181
Query: 282 DIWLFGARTVYKNFFDKKS 300
D FGA ++ D S
Sbjct: 182 DSLTFGAPRFLRHLMDPSS 200
>sp|Q75LI2|FEN12_ORYSJ Flap endonuclease 1-B OS=Oryza sativa subsp. japonica GN=FEN-1b
PE=2 SV=1
Length = 412
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 23/176 (13%)
Query: 152 DVSIWLHQL-----TKGTHDLA--GGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQ 204
D S+ ++Q KGT L G V +HL G+ +R ++L IKPVFVFDG P
Sbjct: 34 DTSLSIYQFLIVVGRKGTEVLTNEAGEV-TSHLQGMLNRTVRILEAGIKPVFVFDGEPPD 92
Query: 205 LKKQTIS--TLEKDRDQLLLERG----------KQTRLASTITEQMSREAQELLQLFGVP 252
+KK+ ++ +L++D L R K ++ +T++ + + + LL L GVP
Sbjct: 93 MKKKELAKRSLKRDGSSEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVP 152
Query: 253 FIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD---KKSHVLRY 305
+ APGEAEAQCA+L + + ++D D FGAR ++ D K+S V +
Sbjct: 153 VVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEF 208
>sp|B8AMS4|FEN12_ORYSI Flap endonuclease 1-B OS=Oryza sativa subsp. indica GN=FEN1b PE=3
SV=1
Length = 412
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 23/176 (13%)
Query: 152 DVSIWLHQL-----TKGTHDLA--GGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQ 204
D S+ ++Q KGT L G V +HL G+ +R ++L IKPVFVFDG P
Sbjct: 34 DTSLSIYQFLIVVGRKGTEVLTNEAGEV-TSHLQGMLNRTVRILEAGIKPVFVFDGEPPD 92
Query: 205 LKKQTIS--TLEKDRDQLLLERG----------KQTRLASTITEQMSREAQELLQLFGVP 252
+KK+ ++ +L++D L R K ++ +T++ + + + LL L GVP
Sbjct: 93 MKKKELAKRSLKRDGSSEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVP 152
Query: 253 FIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD---KKSHVLRY 305
+ APGEAEAQCA+L + + ++D D FGAR ++ D K+S V +
Sbjct: 153 VVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEF 208
>sp|C4M6G8|FEN1_ENTHI Flap endonuclease 1 OS=Entamoeba histolytica GN=FEN1 PE=3 SV=1
Length = 376
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)
Query: 152 DVSIWLHQLTKGTHDLAGGSV------PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D SI ++Q D G ++ +H+IG ++R KL+ IKP++VFDG P++
Sbjct: 34 DASILVYQFISAVRDTTGATMVDEFGETTSHIIGTFYRTIKLIESGIKPIYVFDGKPPEM 93
Query: 206 KKQTI----STLEKDRDQL--LLERG------KQTRLASTITEQMSREAQELLQLFGVPF 253
K + +K ++QL LE G K + + +T++ S E ++LLQL G+P
Sbjct: 94 KDGELHKRKENAQKAQEQLDKALEEGDKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPC 153
Query: 254 IVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDI 310
I A EAE CA+L T+D D G+ V + F +KK + Y+ I
Sbjct: 154 IEANCEAEGTCAALVKAGKCYATATEDMDALTLGSEHVVRKFSANDNKKDPIREYSLSSI 213
>sp|B3L014|FEN1_PLAKH Flap endonuclease 1 OS=Plasmodium knowlesi (strain H) GN=FEN1 PE=3
SV=1
Length = 595
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 140 IVINKLLVDLIS-DVSIWLHQLTKGTHDLAG-GSVPN------AHLIGLYHRICKLLFFK 191
I I L+ +++ D S+ L+Q D G++ N +H+ GL R KL+
Sbjct: 21 IKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGNLTNESGETTSHISGLMSRSIKLMENG 80
Query: 192 IKPVFVFDGGVPQLKKQTIST-----------LEKDRDQLLLER-GKQTRLASTITEQMS 239
+KP++VFDG P+LK + L+K +++ LE KQ+ +T++ +
Sbjct: 81 LKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTKKQN 140
Query: 240 REAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
EA++LL L G+P + AP EAE+QCA L N T+D+D +FG + + +N
Sbjct: 141 EEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNL 196
>sp|B6AFP1|FEN1_CRYMR Flap endonuclease 1 OS=Cryptosporidium muris (strain RN66) GN=FEN1
PE=3 SV=1
Length = 472
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 22/180 (12%)
Query: 142 INKLLVDLIS-DVSIWLHQLTKGTHDLAG-GSVPN------AHLIGLYHRICKLLFFKIK 193
I+ L+ +I+ D S+W++Q + + G++ N +H+ G+ R +LL IK
Sbjct: 23 IDSLIGRIIAIDASMWMYQFLAAIREGSQWGNLTNEAGESTSHISGMLSRTIRLLEAGIK 82
Query: 194 PVFVFDGGVPQLKKQTISTLEKDRD--QLLLERGKQTRLASTITEQMSR----------E 241
PVFVFDG P+LK + + ++ R+ Q LE+ ++ TI +Q+ R +
Sbjct: 83 PVFVFDGEPPELKMEELMKRKERREKAQQELEKAQEEGDTETIRKQLIRTIKITKEQSDD 142
Query: 242 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYK--NFFDKK 299
+ +L+L G+P I A EAEAQCA L GV T+D+D FG V + NF D K
Sbjct: 143 VKYMLKLLGIPVIEATSEAEAQCAELCKEGLVYGVATEDADSLTFGTPLVIRHLNFSDGK 202
>sp|Q4XXP8|FEN1_PLACH Flap endonuclease 1 OS=Plasmodium chabaudi GN=FEN1 PE=3 SV=1
Length = 479
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 152 DVSIWLHQLTKGTHD-------LAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQ 204
D S+ L+Q D + +H+ GL R KL+ +KP++VFDG P+
Sbjct: 34 DASMSLYQFIIAIRDGDQYGNLMNEAGETTSHISGLMSRTIKLMENGLKPIYVFDGAPPE 93
Query: 205 LKKQTISTLEKDR---DQLLL---ERG------KQTRLASTITEQMSREAQELLQLFGVP 252
LK + + R ++LLL E G KQ+ +T++ + EA++LL L G+P
Sbjct: 94 LKGSELEKRGEKRQKAEELLLKAKEEGNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIP 153
Query: 253 FIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
I +P EAEAQCA L + T+D+D +FG + + +N
Sbjct: 154 VIESPCEAEAQCAFLTKYDMAHATATEDADALVFGTKILIRNL 196
>sp|A5KAL1|FEN1_PLAVS Flap endonuclease 1 OS=Plasmodium vivax (strain Salvador I) GN=FEN1
PE=3 SV=1
Length = 623
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 140 IVINKLLVDLIS-DVSIWLHQLTKGTHDLAG-GSVPN------AHLIGLYHRICKLLFFK 191
I I L+ +++ D S+ L+Q D G++ N +H+ GL R KL+
Sbjct: 21 IKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGNLTNESGETTSHISGLMSRSIKLMENG 80
Query: 192 IKPVFVFDGGVPQLKKQTIST-----------LEKDRDQLLLER-GKQTRLASTITEQMS 239
+KP++VFDG P+LK + L+K +++ LE KQ+ +T + +
Sbjct: 81 LKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTRKQN 140
Query: 240 REAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
EA++LL L G+P + AP EAE+QCA L N T+D+D +FG + + +N
Sbjct: 141 EEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNL 196
>sp|Q4N3S6|FEN1_THEPA Flap endonuclease 1 OS=Theileria parva GN=FEN1 PE=3 SV=1
Length = 494
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 19/162 (11%)
Query: 152 DVSIWLHQLTKGTHD-------LAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQ 204
D S L+Q T D + +H+ GL +R K L + IKPVFVFD P+
Sbjct: 34 DASAALYQFTIAIRDSSYFSSLVNSKGESTSHIYGLMNRCSKFLEYGIKPVFVFDSKPPE 93
Query: 205 LKKQTISTLEKDRDQL------LLERGKQTRLAS------TITEQMSREAQELLQLFGVP 252
LK +T+ + R++ + G + + ++++M+ A++LL+L GVP
Sbjct: 94 LKTKTLEKRRQQREEANASLKKAISEGDKESVKKLVGRTVKVSKEMNESAKKLLRLMGVP 153
Query: 253 FIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 294
I A EAEAQCA L N + V ++D+D +FG + +N
Sbjct: 154 VIEALEEAEAQCAYLVTKNLCRFVASEDTDTLVFGGAFLLRN 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,179,664
Number of Sequences: 539616
Number of extensions: 4936499
Number of successful extensions: 18149
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 17667
Number of HSP's gapped (non-prelim): 290
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)