Query psy14294
Match_columns 314
No_of_seqs 187 out of 1134
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 16:09:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe9_Y Exonuclease 1; exonucle 100.0 1.2E-37 4.2E-42 300.9 18.4 182 125-310 1-200 (352)
2 3ory_A Flap endonuclease 1; hy 100.0 8.2E-36 2.8E-40 289.2 17.3 187 123-313 9-232 (363)
3 1b43_A Protein (FEN-1); nuclea 100.0 3.3E-36 1.1E-40 289.0 14.2 185 125-313 1-218 (340)
4 1a76_A Flap endonuclease-1 pro 100.0 3.3E-35 1.1E-39 280.6 16.2 185 125-313 1-206 (326)
5 3q8k_A Flap endonuclease 1; he 100.0 8.1E-35 2.8E-39 280.1 15.8 186 126-314 1-215 (341)
6 1rxw_A Flap structure-specific 100.0 8E-35 2.8E-39 279.0 14.9 185 125-313 1-217 (336)
7 1ul1_X Flap endonuclease-1; pr 100.0 4.1E-34 1.4E-38 278.5 10.8 185 126-313 1-214 (379)
8 2izo_A FEN1, flap structure-sp 100.0 8.9E-33 3E-37 266.0 11.5 173 138-313 11-215 (346)
9 1bgx_T TAQ DNA polymerase; DNA 99.8 2.6E-21 8.8E-26 204.6 0.1 160 137-314 4-172 (832)
10 1exn_A 5'-exonuclease, 5'-nucl 99.8 2.3E-18 7.9E-23 162.2 11.7 155 145-313 18-182 (290)
11 3h7i_A Ribonuclease H, RNAse H 98.9 1.8E-09 6.1E-14 101.9 7.7 130 146-288 13-163 (305)
12 2y35_A LD22664P; hydrolase-DNA 96.6 0.0097 3.3E-07 65.0 11.3 162 125-288 1-213 (1140)
13 3pie_A 5'->3' exoribonuclease 96.3 0.0066 2.3E-07 66.0 7.9 164 125-288 1-214 (1155)
14 3fqd_A Protein DHP1, 5'-3' exo 95.8 0.029 1E-06 59.5 9.8 139 148-288 54-246 (899)
15 3v32_B Ribonuclease ZC3H12A; r 72.6 29 0.001 30.0 10.2 101 147-281 25-134 (185)
16 2kwv_A RAD30 homolog B, DNA po 69.4 1.4 4.8E-05 30.0 0.8 19 90-108 16-34 (48)
17 3v33_A Ribonuclease ZC3H12A; r 60.8 51 0.0018 29.4 9.6 101 147-281 25-134 (223)
18 3mtv_A NSP1B, papain-like cyst 56.2 2.9 0.0001 36.3 0.6 52 93-144 93-149 (203)
19 2khu_A Immunoglobulin G-bindin 35.7 11 0.00038 29.7 0.9 25 89-113 67-91 (108)
20 2ke4_A CDC42-interacting prote 32.0 16 0.00056 28.4 1.3 18 91-108 4-21 (98)
21 3mk7_B Cytochrome C oxidase, C 29.0 25 0.00086 31.0 2.1 30 243-272 157-197 (203)
22 2xw6_A MGS, methylglyoxal synt 29.0 70 0.0024 26.1 4.8 35 244-278 42-80 (134)
23 3aek_A Light-independent proto 27.5 68 0.0023 30.7 5.2 16 186-201 203-218 (437)
24 1rvv_A Riboflavin synthase; tr 26.8 1.1E+02 0.0037 25.6 5.6 46 233-278 25-77 (154)
25 2qip_A Protein of unknown func 26.3 1E+02 0.0035 25.2 5.4 43 242-284 66-122 (165)
26 1hqk_A 6,7-dimethyl-8-ribityll 26.1 1.1E+02 0.0038 25.5 5.6 46 233-278 25-77 (154)
27 1jrj_A Exendin-4; Trp-CAGE, GL 25.6 87 0.003 20.4 3.7 26 21-46 13-39 (39)
28 1di0_A Lumazine synthase; tran 24.6 79 0.0027 26.6 4.4 46 233-278 23-75 (158)
29 2l9b_A MRNA 3'-END-processing 24.5 17 0.00057 29.1 0.1 30 84-113 34-64 (109)
30 3umv_A Deoxyribodipyrimidine p 24.3 1.1E+02 0.0038 30.1 6.2 12 190-201 68-79 (506)
31 3nq4_A 6,7-dimethyl-8-ribityll 24.2 93 0.0032 26.1 4.8 46 233-278 25-78 (156)
32 1kz1_A 6,7-dimethyl-8-ribityll 23.1 1.2E+02 0.0042 25.5 5.3 46 233-278 30-83 (159)
33 1c2y_A Protein (lumazine synth 22.7 1.2E+02 0.0041 25.4 5.1 46 233-278 26-77 (156)
34 1b93_A Protein (methylglyoxal 22.3 97 0.0033 25.8 4.5 35 244-278 50-88 (152)
35 3aek_B Light-independent proto 22.1 2.4E+02 0.0081 27.7 8.0 20 183-202 174-194 (525)
36 2obx_A DMRL synthase 1, 6,7-di 21.7 86 0.0029 26.3 4.0 46 233-278 24-76 (157)
37 3h1g_A Chemotaxis protein CHEY 20.7 2.1E+02 0.0072 20.9 5.9 43 236-278 15-57 (129)
No 1
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=1.2e-37 Score=300.93 Aligned_cols=182 Identities=25% Similarity=0.289 Sum_probs=152.4
Q ss_pred CCcccccccccccc---cccccCCCCEEEeeHHHHHHHHHHHhh--hhCCCCCchHHHHHHHHHH-HHHHhCCCeeEEEe
Q psy14294 125 MPQNDQHSMLEFRC---NIVINKLLVDLISDVSIWLHQLTKGTH--DLAGGSVPNAHLIGLYHRI-CKLLFFKIKPVFVF 198 (314)
Q Consensus 125 m~i~~l~~~l~~~~---~Ls~~~~g~rIaIDas~WL~q~~~a~~--~~~G~~~~~~~l~~f~~rL-~~Ll~~gI~PIFVF 198 (314)
|||+|||+++.+.+ +|..+. |++|||||++||||+++++. ...|.++. ++.++|.+. ..|+++||+|||||
T Consensus 1 MGI~GL~~~L~~~~~~~~l~~l~-Gk~vaIDas~wL~~~~~~~~~~l~~G~~t~--~l~~~~~r~l~~L~~~gI~PvfVF 77 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPIHVRKYK-GQVVAVDTYCWLHKGAIACAEKLAKGEPTD--RYVGFCMKFVNMLLSHGIKPILVF 77 (352)
T ss_dssp -CCTTHHHHTTTSEEEEEGGGGT-TSEEEEETHHHHHHHHHHTHHHHHTTCCCC--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcchHHHHHHhhCCcCCHHHhC-CcEEEEecHHHHHHhhhccchhhcCCCCcH--HHHHHHHHHHHHHHHcCCEEEEEE
Confidence 89999999999886 666777 99999999999999877663 35677765 777776654 56789999999999
Q ss_pred eCCCccchhhhhhhhhhhhHHHHH------------HhcccccccCcccHHHHHHHHHHHHHhCCceEeccchHHHHHHH
Q psy14294 199 DGGVPQLKKQTISTLEKDRDQLLL------------ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCAS 266 (314)
Q Consensus 199 DG~~~~~K~~t~~kR~~~r~~~~~------------~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~EADAq~A~ 266 (314)
||.+++.|+.+..+|+++|.+..+ ++.+..+++..+++.++..++++|+.+||||++||||||+|||+
T Consensus 78 DG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~ 157 (352)
T 3qe9_Y 78 DGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAY 157 (352)
T ss_dssp CCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECCcchHHHHHH
Confidence 999999999998888877664322 12233456778999999999999999999999999999999999
Q ss_pred HHhcCCeeEEEcCCccEEeecCCeeeeeccCCCCcEEEEehhhh
Q psy14294 267 LELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310 (314)
Q Consensus 267 L~~~g~vdaViS~DSD~llfG~~~Vi~~l~~~~~~v~~y~~~~i 310 (314)
|+++|++++|+|+|+|+|+||+++|+++++..++.+ .|+.+++
T Consensus 158 La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~~-~~~~~~~ 200 (352)
T 3qe9_Y 158 LNKAGIVQAIITEDSALLAFGCKKVILKMDQFGNGL-EIDQARL 200 (352)
T ss_dssp HHHTTSCSEEECSCGGGGGGTCSEEEESCCTTSEEE-EEEGGGG
T ss_pred HHHCCCeEEEEeCCcCcccccCCeEEEeccCCCCcE-EEeHHHH
Confidence 999999999999999999999999999998876543 4676664
No 2
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=8.2e-36 Score=289.25 Aligned_cols=187 Identities=25% Similarity=0.329 Sum_probs=161.7
Q ss_pred cCCCccccccccccc----c-cccccCCCCEEEeeHHHHHHHHHHHhhh--------hCCCCCchHHHHHHHHHHHHHHh
Q psy14294 123 HEMPQNDQHSMLEFR----C-NIVINKLLVDLISDVSIWLHQLTKGTHD--------LAGGSVPNAHLIGLYHRICKLLF 189 (314)
Q Consensus 123 ~~m~i~~l~~~l~~~----~-~Ls~~~~g~rIaIDas~WL~q~~~a~~~--------~~G~~~~~~~l~~f~~rL~~Ll~ 189 (314)
..||| +||.++.+. . +|+.+. |++|+|||++||||++.+++. ..|.++. ++.+|++|+..|+.
T Consensus 9 ~~MGv-~L~~ll~~~~~~~~~~l~~l~-gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~--al~gf~~r~~~ll~ 84 (363)
T 3ory_A 9 VDMGV-DLKDIIPGEAKTVIEDLRILH-GKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITS--HLSGLFYRTINIVE 84 (363)
T ss_dssp CCCSC-CCGGGCCGGGEEECSSGGGGT-TCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCH--HHHHHHHHHHHHHH
T ss_pred cccCc-CHHHHhhHhcccccCCHHHhC-CCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCcc--HHHHHHHHHHHHHH
Confidence 34999 999999942 3 677777 999999999999998877643 3455543 99999999999999
Q ss_pred CCCeeEEEeeCCCccchhhhhhhhhhhhHHHHH------------HhcccccccCcccHHHHHHHHHHHHHhCCceEecc
Q psy14294 190 FKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLL------------ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAP 257 (314)
Q Consensus 190 ~gI~PIFVFDG~~~~~K~~t~~kR~~~r~~~~~------------~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP 257 (314)
+||+|+|||||.+|+.|..+..+|+..|.++.+ ++.++.+++..+++.|+..++++|+.+||||++||
T Consensus 85 ~~i~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~ap 164 (363)
T 3ory_A 85 AGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAP 164 (363)
T ss_dssp TTCEEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECS
T ss_pred cCCCcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999888876532 23455677889999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCeeEEEcCCccEEeecCCeeeeeccCCCC------------cEEEEehhhhhhc
Q psy14294 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS------------HVLRYTAPDIRYY 313 (314)
Q Consensus 258 ~EADAq~A~L~~~g~vdaViS~DSD~llfG~~~Vi~~l~~~~~------------~v~~y~~~~i~~~ 313 (314)
||||||||+|++.|++++|+|+|+|+|+||+++|+++++..++ ..++|+.+.+..+
T Consensus 165 gEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~ 232 (363)
T 3ory_A 165 AEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQ 232 (363)
T ss_dssp SCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHH
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHH
Confidence 9999999999999999999999999999999999999987642 2478999988765
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=3.3e-36 Score=289.03 Aligned_cols=185 Identities=25% Similarity=0.319 Sum_probs=156.3
Q ss_pred CCccccccccccc-ccccccCCCCEEEeeHHHHHHHHHHHhhh--------hCCCCCchHHHHHHHHHHHHHHhCCCeeE
Q psy14294 125 MPQNDQHSMLEFR-CNIVINKLLVDLISDVSIWLHQLTKGTHD--------LAGGSVPNAHLIGLYHRICKLLFFKIKPV 195 (314)
Q Consensus 125 m~i~~l~~~l~~~-~~Ls~~~~g~rIaIDas~WL~q~~~a~~~--------~~G~~~~~~~l~~f~~rL~~Ll~~gI~PI 195 (314)
||| |||+++..+ .+|+.++ |++|+|||++||||++++++. ..|.++. ++.+|++++..|+++||+||
T Consensus 1 MGI-gL~~~l~~~~~~l~~l~-g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~--~l~g~~~~l~~ll~~~i~pv 76 (340)
T 1b43_A 1 MGV-PIGEIIPRKEIELENLY-GKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITS--HLSGLFYRTINLMEAGIKPV 76 (340)
T ss_dssp -CC-CCGGGCCCEECCGGGGT-TCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCH--HHHHHHHHHHHHHHTTCEEE
T ss_pred CCC-ChHHHhcccccCHHHhC-CCEEEEEhHHHHHHHHHHhccccCCccccccCCchH--HHHHHHHHHHHHHhCCCEEE
Confidence 899 999999332 2777777 999999999999999988752 3455543 99999999999999999999
Q ss_pred EEeeCCCccchhhhhhhhhhhhHHHHH---Hhc---------ccccccCcccHHHHHHHHHHHHHhCCceEeccchHHHH
Q psy14294 196 FVFDGGVPQLKKQTISTLEKDRDQLLL---ERG---------KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQ 263 (314)
Q Consensus 196 FVFDG~~~~~K~~t~~kR~~~r~~~~~---~~~---------k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~EADAq 263 (314)
|||||..++.|..+..+|+.+|.++.. ..+ ++.+++..+++.++..++++|+.+||||++||||||+|
T Consensus 77 ~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~EADa~ 156 (340)
T 1b43_A 77 YVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQ 156 (340)
T ss_dssp EEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCHHHH
T ss_pred EEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcChhHHHH
Confidence 999999999999999888877765432 112 23445667889999999999999999999999999999
Q ss_pred HHHHHhcCCeeEEEcCCccEEeecCCeeeeeccCCCC------------cEEEEehhhhhhc
Q psy14294 264 CASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS------------HVLRYTAPDIRYY 313 (314)
Q Consensus 264 ~A~L~~~g~vdaViS~DSD~llfG~~~Vi~~l~~~~~------------~v~~y~~~~i~~~ 313 (314)
||+|++.|++++|+|+|||+|+||+++|+++++..++ .+++|+.+++...
T Consensus 157 iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~ 218 (340)
T 1b43_A 157 AAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKE 218 (340)
T ss_dssp HHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHH
T ss_pred HHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHH
Confidence 9999999999999999999999999999999987753 3568999988754
No 4
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=3.3e-35 Score=280.59 Aligned_cols=185 Identities=24% Similarity=0.302 Sum_probs=159.6
Q ss_pred CCccccccccccc-ccccccCCCCEEEeeHHHHHHHHHHHhh--------hhCCCCCchHHHHHHHHHHHHHHhCCCeeE
Q psy14294 125 MPQNDQHSMLEFR-CNIVINKLLVDLISDVSIWLHQLTKGTH--------DLAGGSVPNAHLIGLYHRICKLLFFKIKPV 195 (314)
Q Consensus 125 m~i~~l~~~l~~~-~~Ls~~~~g~rIaIDas~WL~q~~~a~~--------~~~G~~~~~~~l~~f~~rL~~Ll~~gI~PI 195 (314)
||| +||+++..+ .+|+.+. |++|+|||++||||++++++ ...|.++. ++.+|+.++..|+.++|+|+
T Consensus 1 MGI-gL~~~l~~~~~~l~~l~-~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~--~l~g~~~~l~~ll~~~i~Pv 76 (326)
T 1a76_A 1 MGV-QFGDFIPKNIISFEDLK-GKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITS--AYNGVFYKTIHLLENDITPI 76 (326)
T ss_dssp -CC-CCGGGSCCEECCSGGGT-TCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCH--HHHHHHHHHHHHHHTTCEEE
T ss_pred CCC-ChHHHHhhcccCHHHhC-CCEEEEEhHHHHHHHHHhhccccccccccccCCccH--HHHHHHHHHHHHHHCCCeEE
Confidence 899 999999333 2777777 89999999999999998875 23455543 89999999999989999999
Q ss_pred EEeeCCCccchhhhhhhhhhhhHHH------------HHHhcccccccCcccHHHHHHHHHHHHHhCCceEeccchHHHH
Q psy14294 196 FVFDGGVPQLKKQTISTLEKDRDQL------------LLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQ 263 (314)
Q Consensus 196 FVFDG~~~~~K~~t~~kR~~~r~~~------------~~~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~EADAq 263 (314)
|||||..++.|..+..+|+..|.++ .+++.++.+++..+++.++..++++|+.+||||++||||||+|
T Consensus 77 ~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ 156 (326)
T 1a76_A 77 WVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQ 156 (326)
T ss_dssp EEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCHHHH
T ss_pred EEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCccHHHH
Confidence 9999999999999888877666432 1234556677888999999999999999999999999999999
Q ss_pred HHHHHhcCCeeEEEcCCccEEeecCCeeeeeccCCCCcEEEEehhhhhhc
Q psy14294 264 CASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYY 313 (314)
Q Consensus 264 ~A~L~~~g~vdaViS~DSD~llfG~~~Vi~~l~~~~~~v~~y~~~~i~~~ 313 (314)
||+|++.|++++|+|+|+|+++||+++|+++++..++.+++|+.+++..+
T Consensus 157 ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~~~~~~~~~v~~~ 206 (326)
T 1a76_A 157 ASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKEMPELIELNEVLED 206 (326)
T ss_dssp HHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCSSCCEEEEHHHHHHH
T ss_pred HHHHHHCCCEEEEecCCcccceecCCEEEEeecCCCCceEEEEHHHHHHH
Confidence 99999999999999999999999999999999988789999999998764
No 5
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=8.1e-35 Score=280.14 Aligned_cols=186 Identities=26% Similarity=0.386 Sum_probs=160.9
Q ss_pred Ccccccccccccc-------cccccCCCCEEEeeHHHHHHHHHHHhh-------hhCCCCCchHHHHHHHHHHHHHHhCC
Q psy14294 126 PQNDQHSMLEFRC-------NIVINKLLVDLISDVSIWLHQLTKGTH-------DLAGGSVPNAHLIGLYHRICKLLFFK 191 (314)
Q Consensus 126 ~i~~l~~~l~~~~-------~Ls~~~~g~rIaIDas~WL~q~~~a~~-------~~~G~~~~~~~l~~f~~rL~~Ll~~g 191 (314)
||+|||+++.+.+ +|+.+. |++|+|||++||||+++++. ...|.++. ++.+|++++..|+++|
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~l~~l~-gk~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~--al~g~~~~~~~ll~~~ 77 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIRENDIKSYF-GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS--HLMGMFYRTIRMMENG 77 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEEGGGGT-TCEEEEEHHHHHHHHHHHCEETTEECBCTTSCBCH--HHHHHHHHHHHHHTTT
T ss_pred CchhHHHHHHHhhhhccccccHHHhC-CCEEEEecHHHHHHHHHccccccCCCCCCCCCCch--HHHHHHHHHHHHHHCC
Confidence 6899999998664 577777 99999999999999998874 24566653 9999999999999999
Q ss_pred CeeEEEeeCCCccchhhhhhhhhhhhHHHH------------HHhcccccccCcccHHHHHHHHHHHHHhCCceEeccch
Q psy14294 192 IKPVFVFDGGVPQLKKQTISTLEKDRDQLL------------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGE 259 (314)
Q Consensus 192 I~PIFVFDG~~~~~K~~t~~kR~~~r~~~~------------~~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~E 259 (314)
|+|+|||||..++.|.++..+|+..|.++. ++..++.+++..+++.++..++++|+.+||||++||||
T Consensus 78 i~P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~E 157 (341)
T 3q8k_A 78 IKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSE 157 (341)
T ss_dssp CEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSC
T ss_pred CCceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCcc
Confidence 999999999999999999998887776532 12345566778899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeeEEEcCCccEEeecCCeeeeeccCCC---CcEEEEehhhhhhcC
Q psy14294 260 AEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK---SHVLRYTAPDIRYYF 314 (314)
Q Consensus 260 ADAq~A~L~~~g~vdaViS~DSD~llfG~~~Vi~~l~~~~---~~v~~y~~~~i~~~~ 314 (314)
||+|||+|++.|.|++|+|+|+|+|+||+++|+++++..+ ..+++|+.+++..+|
T Consensus 158 ADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 215 (341)
T 3q8k_A 158 AEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQEL 215 (341)
T ss_dssp HHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHHHh
Confidence 9999999999999999999999999999999999986532 368999999987653
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=8e-35 Score=279.00 Aligned_cols=185 Identities=25% Similarity=0.305 Sum_probs=155.8
Q ss_pred CCcccccccccccc-cccccCCCCEEEeeHHHHHHHHHHHhhh--------hCCCCCchHHHHHHHHHHHHHHhCCCeeE
Q psy14294 125 MPQNDQHSMLEFRC-NIVINKLLVDLISDVSIWLHQLTKGTHD--------LAGGSVPNAHLIGLYHRICKLLFFKIKPV 195 (314)
Q Consensus 125 m~i~~l~~~l~~~~-~Ls~~~~g~rIaIDas~WL~q~~~a~~~--------~~G~~~~~~~l~~f~~rL~~Ll~~gI~PI 195 (314)
||| +||+++..+. +|+.++ |++++|||++|+||++++++. ..|.++. ++.+|++++..|++++|+||
T Consensus 1 MGI-~L~~~l~~~~~~l~~l~-~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~--a~~g~~~~l~~ll~~~i~Pv 76 (336)
T 1rxw_A 1 MGA-DIGDLFEREEVELEYFS-GKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITS--HLSGILYRVSNMVEVGIRPV 76 (336)
T ss_dssp --C-TGGGGCCCEECCGGGGT-TCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCH--HHHHHHHHHHHHHHHTCEEE
T ss_pred CCC-ChHHHHhcceeCHHHhC-CCEEEEEhHHHHHHHHHhhccccCCcccccCCCccH--HHHHHHHHHHHHHHCCCEEE
Confidence 899 9999995443 888887 899999999999999988642 3566543 89999999999999999999
Q ss_pred EEeeCCCccchhhhhhhhhhhhHHHHH-----------HhcccccccCcccHHHHHHHHHHHHHhCCceEeccchHHHHH
Q psy14294 196 FVFDGGVPQLKKQTISTLEKDRDQLLL-----------ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQC 264 (314)
Q Consensus 196 FVFDG~~~~~K~~t~~kR~~~r~~~~~-----------~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~EADAq~ 264 (314)
|||||..++.|..+..+|+..|.++.+ +..++.+++..+++.++..++++|+.+||||++|||||||||
T Consensus 77 ~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeAEA~l 156 (336)
T 1rxw_A 77 FVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQA 156 (336)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHHH
T ss_pred EEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCchHHHHH
Confidence 999999999999999888888876552 222334556788999999999999999999999999999999
Q ss_pred HHHHhcCCeeEEEcCCccEEeecCCeeeeeccCCCC------------cEEEEehhhhhhc
Q psy14294 265 ASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS------------HVLRYTAPDIRYY 313 (314)
Q Consensus 265 A~L~~~g~vdaViS~DSD~llfG~~~Vi~~l~~~~~------------~v~~y~~~~i~~~ 313 (314)
|+|++.|++++|+|+|+|+++||+++|+++++..++ .+++|+.+.+..+
T Consensus 157 A~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 217 (336)
T 1rxw_A 157 AYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKR 217 (336)
T ss_dssp HHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHH
T ss_pred HHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHH
Confidence 999999999999999999999999999999987642 4678999888654
No 7
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=4.1e-34 Score=278.52 Aligned_cols=185 Identities=26% Similarity=0.384 Sum_probs=146.4
Q ss_pred Ccccccccccccc-------cccccCCCCEEEeeHHHHHHHHHHHhh-------hhCCCCCchHHHHHHHHHHHHHHhCC
Q psy14294 126 PQNDQHSMLEFRC-------NIVINKLLVDLISDVSIWLHQLTKGTH-------DLAGGSVPNAHLIGLYHRICKLLFFK 191 (314)
Q Consensus 126 ~i~~l~~~l~~~~-------~Ls~~~~g~rIaIDas~WL~q~~~a~~-------~~~G~~~~~~~l~~f~~rL~~Ll~~g 191 (314)
||+|||+++.+.+ +|+.+. |++|+|||++||||+++++. ...|.++. ++.+|++++..|+++|
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~l~~l~-g~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~--~l~g~~~~~~~ll~~~ 77 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIRENDIKSYF-GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS--HLMGMFYRTIRMMENG 77 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGT-TCCEEEEHHHHHHHHHSCC-------------CCH--HHHHHHHHHHHHHHTT
T ss_pred CcChhHHHHHHhccccceeeCHHHcC-CCEEEEEchHHHHHHHHhCCCcccccCcCCCCCch--HHHHHHHHHHHHHHCC
Confidence 6899999998754 666777 89999999999999988663 23455543 8999999999999999
Q ss_pred CeeEEEeeCCCccchhhhhhhhhhhhHHHH------------HHhcccccccCcccHHHHHHHHHHHHHhCCceEeccch
Q psy14294 192 IKPVFVFDGGVPQLKKQTISTLEKDRDQLL------------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGE 259 (314)
Q Consensus 192 I~PIFVFDG~~~~~K~~t~~kR~~~r~~~~------------~~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~E 259 (314)
|+|+|||||..++.|..+..+|+..|.++. ++..++.+++..+++.++..++++|+.+||||++||||
T Consensus 78 i~P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apgE 157 (379)
T 1ul1_X 78 IKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSE 157 (379)
T ss_dssp CCEEEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSC
T ss_pred CCeEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCCc
Confidence 999999999999999998888877665431 23345566777888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeeEEEcCCccEEeecCCeeeeeccCCC---CcEEEEehhhhhhc
Q psy14294 260 AEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKK---SHVLRYTAPDIRYY 313 (314)
Q Consensus 260 ADAq~A~L~~~g~vdaViS~DSD~llfG~~~Vi~~l~~~~---~~v~~y~~~~i~~~ 313 (314)
||+|||+|++.|.+++|+|+|+|+|+||+++|+++++..+ ..+++|+.+.|...
T Consensus 158 ADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~ 214 (379)
T 1ul1_X 158 AEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQE 214 (379)
T ss_dssp HHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHHHHH
Confidence 9999999999999999999999999999999999987542 37999999988754
No 8
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.98 E-value=8.9e-33 Score=266.01 Aligned_cols=173 Identities=24% Similarity=0.288 Sum_probs=123.1
Q ss_pred ccccccCCCCEEEeeHHHHHHHHHHHhhh--------hCCCCCchHHHHHHHHHHHHHHhCCCeeEEEeeCCCccchhhh
Q psy14294 138 CNIVINKLLVDLISDVSIWLHQLTKGTHD--------LAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQT 209 (314)
Q Consensus 138 ~~Ls~~~~g~rIaIDas~WL~q~~~a~~~--------~~G~~~~~~~l~~f~~rL~~Ll~~gI~PIFVFDG~~~~~K~~t 209 (314)
.+|+.+. |++|+|||++||||++++++. ..|.++. ++.+|++++..|+++||+|||||||..++.|..+
T Consensus 11 ~~l~~l~-~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~--al~g~~~~~~~ll~~~i~Pv~vFDG~~~~~r~~~ 87 (346)
T 2izo_A 11 LSFSELK-GKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTS--HLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEE 87 (346)
T ss_dssp CCHHHHT-TEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCH--HHHHHHHHHHHHHHHTEEEEEEECC---------
T ss_pred CCHHHhC-CCEEEEEhHHHHHHHHHhccccccccccccCCCccH--HHHHHHHHHHHHHHCCCcEEEEECCCCcchhhhH
Confidence 4778888 899999999999999987742 3466553 8999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHH------------HhcccccccCcccHHHHHHHHHHHHHhCCceEeccchHHHHHHHHHhcCCeeEEE
Q psy14294 210 ISTLEKDRDQLLL------------ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVI 277 (314)
Q Consensus 210 ~~kR~~~r~~~~~------------~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~EADAq~A~L~~~g~vdaVi 277 (314)
..+|+..|.++.+ ++.++.+++..+++.++..++++|+.+||||++||||||+|||+|++.|++++|+
T Consensus 88 ~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~ 167 (346)
T 2izo_A 88 LERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAA 167 (346)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEE
Confidence 8888877765422 2334556677889999999999999999999999999999999999999999999
Q ss_pred cCCccEEeecCCeeeeeccCCCC------------cEEEEehhhhhhc
Q psy14294 278 TDDSDIWLFGARTVYKNFFDKKS------------HVLRYTAPDIRYY 313 (314)
Q Consensus 278 S~DSD~llfG~~~Vi~~l~~~~~------------~v~~y~~~~i~~~ 313 (314)
|+|+|+|+||+++|+++++..++ .+++|+.+.+...
T Consensus 168 S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~ 215 (346)
T 2izo_A 168 SQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKK 215 (346)
T ss_dssp CSSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHH
T ss_pred CCCCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHH
Confidence 99999999999999999976542 3678999888654
No 9
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.80 E-value=2.6e-21 Score=204.62 Aligned_cols=160 Identities=17% Similarity=0.133 Sum_probs=126.4
Q ss_pred cccccccCCCCEEEeeHHHHHHHHHHHhh---hhCCCCCchHHHHHHHHHHHHHHhC-CCeeEEEeeCCCccchhhhhhh
Q psy14294 137 RCNIVINKLLVDLISDVSIWLHQLTKGTH---DLAGGSVPNAHLIGLYHRICKLLFF-KIKPVFVFDGGVPQLKKQTIST 212 (314)
Q Consensus 137 ~~~Ls~~~~g~rIaIDas~WL~q~~~a~~---~~~G~~~~~~~l~~f~~rL~~Ll~~-gI~PIFVFDG~~~~~K~~t~~k 212 (314)
..+|+.++ ++.++|||++|+||+++++. ...|.|+. ++.+|++++..|++. +++|+|||||..+..|......
T Consensus 4 ~~~l~~~~-~~~llIDg~~~l~ra~~a~~~l~~~~G~~t~--av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~ 80 (832)
T 1bgx_T 4 MLPLFEPK-GRVLLVDGHHLAYRTFHALKGLTTSRGEPVQ--AVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGG 80 (832)
T ss_dssp SSCCCCCC-TTSCCCCCSTHHHHTTSSCTTCBCSSSCBCS--SSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGT
T ss_pred ccCHHHhC-CCEEEEEChHHHHHHHhcCCccccCCCcEeh--HHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHH
Confidence 34677777 88999999999999988864 34677765 899999999887764 6999999999877776665544
Q ss_pred hhhhhHHHHHHhcccccccCcccHHHHHHHHHHHHHhCCceEecc-chHHHHHHHHHh----cCCeeEEEcCCccEEeec
Q psy14294 213 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAP-GEAEAQCASLEL----GNHTQGVITDDSDIWLFG 287 (314)
Q Consensus 213 R~~~r~~~~~~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP-~EADAq~A~L~~----~g~vdaViS~DSD~llfG 287 (314)
++..|. ..+.....++..++++|+.+||||+.+| ||||++||+|++ .|+.++|+|+|+|+++|+
T Consensus 81 YKa~R~-----------~~pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~ 149 (832)
T 1bgx_T 81 YKAGRA-----------PTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLL 149 (832)
T ss_dssp TTSCCC-----------CCCTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTC
T ss_pred HHhccc-----------cChHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcC
Confidence 332222 1233344567789999999999999999 599999999997 688889999999999999
Q ss_pred CCeeeeeccCCCCcEEEEehhhhhhcC
Q psy14294 288 ARTVYKNFFDKKSHVLRYTAPDIRYYF 314 (314)
Q Consensus 288 ~~~Vi~~l~~~~~~v~~y~~~~i~~~~ 314 (314)
++.|+.... .+ ++|+.+.+...|
T Consensus 150 ~~~v~~~~~-~g---~~~~~~~v~~~~ 172 (832)
T 1bgx_T 150 SDRIHVLHP-EG---YLITPAWLWEKY 172 (832)
T ss_dssp CTTBCBCCS-SS---CCBCSTTHHHHT
T ss_pred cCCEEEEeC-CC---cEEcHHHHHHHH
Confidence 999887766 33 678877776543
No 10
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.76 E-value=2.3e-18 Score=162.25 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=111.8
Q ss_pred CCCEEEeeHHHHHHHHHHHhhhhCCCCCchHHHHHHHHHHHHHHhC-C-CeeEEEeeCCCccchhhhhhhhhhhhHHHHH
Q psy14294 145 LLVDLISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFF-K-IKPVFVFDGGVPQLKKQTISTLEKDRDQLLL 222 (314)
Q Consensus 145 ~g~rIaIDas~WL~q~~~a~~~~~G~~~~~~~l~~f~~rL~~Ll~~-g-I~PIFVFDG~~~~~K~~t~~kR~~~r~~~~~ 222 (314)
++..++|||++|+||+++ ...|.| ++.+|++++..|++. + -+++|||||..+..+......++..|...-.
T Consensus 18 ~~~lllIDg~~llyRa~~---~~~G~p----av~Gf~~~l~~ll~~~~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~ 90 (290)
T 1exn_A 18 RRNLMIVDGTNLGFRFKH---NNSKKP----FASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYA 90 (290)
T ss_dssp -CEEEEEEHHHHHHHHHH---HCSSSC----CHHHHHHHHHHHHHHTTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHh---CCCCch----HHHHHHHHHHHHHHHcCCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCc
Confidence 367899999999999876 356776 799999999888774 2 2459999997665655555555544544211
Q ss_pred HhcccccccCcccHHHHHHHHHHHHH--hCCceEecc-chHHHHHHHHHhc----CCeeEEEcCCccEEeecCCee-eee
Q psy14294 223 ERGKQTRLASTITEQMSREAQELLQL--FGVPFIVAP-GEAEAQCASLELG----NHTQGVITDDSDIWLFGARTV-YKN 294 (314)
Q Consensus 223 ~~~k~~r~~~~i~~~~i~~~~~lLk~--lGV~~I~AP-~EADAq~A~L~~~----g~vdaViS~DSD~llfG~~~V-i~~ 294 (314)
+ +.. ....+.+.++..++++|+. +|||++.+| ||||++||+|++. |....|+|.|+|+++|+.+.| +.+
T Consensus 91 ~--~~~-~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~ 167 (290)
T 1exn_A 91 Q--RTE-EEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFS 167 (290)
T ss_dssp T--SCH-HHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEE
T ss_pred c--ccc-cchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEEEE
Confidence 0 000 0112222337789999999 999999999 5999999999985 766689999999999999876 232
Q ss_pred ccCCCCcEEEEehhhhhhc
Q psy14294 295 FFDKKSHVLRYTAPDIRYY 313 (314)
Q Consensus 295 l~~~~~~v~~y~~~~i~~~ 313 (314)
. ...++|+.+.+...
T Consensus 168 ~----~~~~~~~~~~v~ek 182 (290)
T 1exn_A 168 F----TTRREYHLRDMYEH 182 (290)
T ss_dssp T----TTTEEECGGGHHHH
T ss_pred C----CCCEEEcHHHHHHH
Confidence 2 16678888877654
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=98.91 E-value=1.8e-09 Score=101.94 Aligned_cols=130 Identities=16% Similarity=-0.016 Sum_probs=86.9
Q ss_pred CCEEEeeHHHHHHHHHHH-hhhhCCCCCchHHHHH-HHHHHHHHHh-----CCCeeEEEeeCCCccchhhhhhhhhhhhH
Q psy14294 146 LVDLISDVSIWLHQLTKG-THDLAGGSVPNAHLIG-LYHRICKLLF-----FKIKPVFVFDGGVPQLKKQTISTLEKDRD 218 (314)
Q Consensus 146 g~rIaIDas~WL~q~~~a-~~~~~G~~~~~~~l~~-f~~rL~~Ll~-----~gI~PIFVFDG~~~~~K~~t~~kR~~~r~ 218 (314)
..-+.|||++.+|+.+.. .....|.++. .+++ |+..|..+++ ..-+.+++||+...+..|.+...
T Consensus 13 ~~llLIDgssl~~ra~~~~f~~~~g~~tn--av~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp------ 84 (305)
T 3h7i_A 13 EGICLIDFSQIALSTALVNFPDKEKINLS--MVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAY------ 84 (305)
T ss_dssp CCEEEEEHHHHHHHHHHHHSCSSSCCCHH--HHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHST------
T ss_pred CCEEEEeccHHHHHHHHHhcCCCCCcchH--HHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCH------
Confidence 356889999999996432 3445677654 6665 7777766543 45568999998532333333222
Q ss_pred HHHHHhcccccc-cCcc-------cHHHH-HHHHHHHHHhCCceEecc-chHHHHHHHHHhc----CCeeEEEcCCccEE
Q psy14294 219 QLLLERGKQTRL-ASTI-------TEQMS-REAQELLQLFGVPFIVAP-GEAEAQCASLELG----NHTQGVITDDSDIW 284 (314)
Q Consensus 219 ~~~~~~~k~~r~-~~~i-------~~~~i-~~~~~lLk~lGV~~I~AP-~EADAq~A~L~~~----g~vdaViS~DSD~l 284 (314)
.+|..|. .+.. ...++ ..++++|+.+|||++..| ||||..+|.|++. |+--.|+|.|.|++
T Consensus 85 -----~YKanR~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~ 159 (305)
T 3h7i_A 85 -----YYKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFT 159 (305)
T ss_dssp -----TTTHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCG
T ss_pred -----HhccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCcc
Confidence 1222221 1111 11223 579999999999999999 7999999999863 54447999999999
Q ss_pred eecC
Q psy14294 285 LFGA 288 (314)
Q Consensus 285 lfG~ 288 (314)
+.-.
T Consensus 160 QLv~ 163 (305)
T 3h7i_A 160 QLHK 163 (305)
T ss_dssp GGGG
T ss_pred cccc
Confidence 8764
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=96.59 E-value=0.0097 Score=64.98 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=92.7
Q ss_pred CCcccccccccccccccc-----cC--CCCEEEeeHHHHHHHHHHHhhhhCCCC-CchHHHHHHHHHHHHHH---hCCCe
Q psy14294 125 MPQNDQHSMLEFRCNIVI-----NK--LLVDLISDVSIWLHQLTKGTHDLAGGS-VPNAHLIGLYHRICKLL---FFKIK 193 (314)
Q Consensus 125 m~i~~l~~~l~~~~~Ls~-----~~--~g~rIaIDas~WL~q~~~a~~~~~G~~-~~~~~l~~f~~rL~~Ll---~~gI~ 193 (314)
|||-++..|+..+-+... .. .=--+.||.++.+|.+.+........+ +....+..+|..|..|. +-.-.
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~~~~~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrkl 80 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRL 80 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEETTTSCCCSEEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSSE
T ss_pred CChhHHHHHHHHHCCchhhhccccCCCcCCeEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheecccee
Confidence 788888888886643221 00 012489999999998754321111111 11224445555555444 34444
Q ss_pred eEEEeeCCCccchhhhhhhhhhhhH-HHH---HHh---------cccccccCcccH--HHHH----HHHHHHHH------
Q psy14294 194 PVFVFDGGVPQLKKQTISTLEKDRD-QLL---LER---------GKQTRLASTITE--QMSR----EAQELLQL------ 248 (314)
Q Consensus 194 PIFVFDG~~~~~K~~t~~kR~~~r~-~~~---~~~---------~k~~r~~~~i~~--~~i~----~~~~lLk~------ 248 (314)
.++.+||..|..|..++..||-+.. ++. ..+ .++. +..|+| +... .++..+..
T Consensus 81 l~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~fd--sn~ITPGT~FM~~l~~~L~~~i~~k~~~d~ 158 (1140)
T 2y35_A 81 FFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREHERFD--SNCITPGTEFMVRLQEGLRAFLKTKISTDP 158 (1140)
T ss_dssp EEEECCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC--SGGGSTTSHHHHHHHHHHHHHHHHHHHHCG
T ss_pred EEEEecCCCchhHHHHHHHHHhhhhhhhhhhHHHHhhcCCccccccCC--ccccCCCcHHHHHHHHHHHHHHHHHhccCc
Confidence 6889999999999988877654322 111 000 1111 222332 1122 12222211
Q ss_pred --hCCceEec----cchHHHHHHHHHhc---------CCeeEEEcCCccEEeecC
Q psy14294 249 --FGVPFIVA----PGEAEAQCASLELG---------NHTQGVITDDSDIWLFGA 288 (314)
Q Consensus 249 --lGV~~I~A----P~EADAq~A~L~~~---------g~vdaViS~DSD~llfG~ 288 (314)
.++.+|.+ |||+|.-+....+. +..+.|+|.|+|+++.|-
T Consensus 159 ~w~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L 213 (1140)
T 2y35_A 159 LWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGL 213 (1140)
T ss_dssp GGSSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHH
T ss_pred cccceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHH
Confidence 26788875 69999988866652 356789999999999983
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=96.32 E-value=0.0066 Score=66.00 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=93.4
Q ss_pred CCcccccccccccccccc---cC----CCCEEEeeHHHHHHHHHHHhhhhCCCCCc-hHHHHHHHHHHHHHHhC---CCe
Q psy14294 125 MPQNDQHSMLEFRCNIVI---NK----LLVDLISDVSIWLHQLTKGTHDLAGGSVP-NAHLIGLYHRICKLLFF---KIK 193 (314)
Q Consensus 125 m~i~~l~~~l~~~~~Ls~---~~----~g~rIaIDas~WL~q~~~a~~~~~G~~~~-~~~l~~f~~rL~~Ll~~---gI~ 193 (314)
|||-++..|+..+-+... .. .=-.+.||.++.+|.+.+........+.+ ...+..+|..|..|... .-.
T Consensus 1 MGVP~ffrwl~~ryP~i~~~~~~~~~pe~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~~~~if~yid~l~~~vrPrkl 80 (1155)
T 3pie_A 1 MGIPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQT 80 (1155)
T ss_pred CChHHHHHHHHHhCcchhhcccCCCCCcCCeEEEecccceeeeecCCCCccccCCCHHHHHHHHHHHHHHHHHhcCcceE
Confidence 677777777776532210 00 01248999999999875432111111222 22455666666666542 222
Q ss_pred eEEEeeCCCccchhhhhhhhhhhhH-HHHH---Hh-ccc------cc-ccCcccH--HHHHHHHHHHHH-----------
Q psy14294 194 PVFVFDGGVPQLKKQTISTLEKDRD-QLLL---ER-GKQ------TR-LASTITE--QMSREAQELLQL----------- 248 (314)
Q Consensus 194 PIFVFDG~~~~~K~~t~~kR~~~r~-~~~~---~~-~k~------~r-~~~~i~~--~~i~~~~~lLk~----------- 248 (314)
.++.+||..|..|..++..||-+.. ++.. .+ .+. .. .+..|+| +....+...|+.
T Consensus 81 lyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~~L~~~L~~~i~~k~~~d~~ 160 (1155)
T 3pie_A 81 FYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTR 160 (1155)
T ss_pred EEEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccccccccCCcHHHHHHHHHHHHHHHHHhhCCcC
Confidence 4689999999999998877764332 1111 00 000 00 1222332 222233333321
Q ss_pred -hCCceEec----cchHHHHHHHHHhc---------CCeeEEEcCCccEEeecC
Q psy14294 249 -FGVPFIVA----PGEAEAQCASLELG---------NHTQGVITDDSDIWLFGA 288 (314)
Q Consensus 249 -lGV~~I~A----P~EADAq~A~L~~~---------g~vdaViS~DSD~llfG~ 288 (314)
-++.+|.+ |||+|.=+....+. +..+.|+|.|+|+++.|-
T Consensus 161 w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L 214 (1155)
T 3pie_A 161 WQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGL 214 (1155)
T ss_pred ccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhh
Confidence 15677865 69999998876653 346789999999999984
No 14
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=95.83 E-value=0.029 Score=59.47 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=81.3
Q ss_pred EEEeeHHHHHHHHHHHhhhhCCCCC-chHHHHHHHHHHHHHHh---CCCeeEEEeeCCCccchhhhhhhhhhhhH-HHH-
Q psy14294 148 DLISDVSIWLHQLTKGTHDLAGGSV-PNAHLIGLYHRICKLLF---FKIKPVFVFDGGVPQLKKQTISTLEKDRD-QLL- 221 (314)
Q Consensus 148 rIaIDas~WL~q~~~a~~~~~G~~~-~~~~l~~f~~rL~~Ll~---~gI~PIFVFDG~~~~~K~~t~~kR~~~r~-~~~- 221 (314)
.+.||..+.||.+.+.-. ...+. ....+..+|..|..|.. =.-..++.+||..|..|..++..||-+.. ++.
T Consensus 54 nLYlDmNgIIH~c~h~~~--~~~~~te~e~~~~If~yid~l~~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~ 131 (899)
T 3fqd_A 54 NLYLDMNGIVHPCSHPED--RPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAAL 131 (899)
T ss_dssp EEEEETHHHHHHHHSCSS--SCCCCSHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhhcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHcCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhh
Confidence 478899999998754211 11122 22245566666665543 22234788999999999998877764322 111
Q ss_pred --H-------Hh---cccc-------c--ccCcccH--HHHHHHHHHHH-----H-------hCCceEec----cchHHH
Q psy14294 222 --L-------ER---GKQT-------R--LASTITE--QMSREAQELLQ-----L-------FGVPFIVA----PGEAEA 262 (314)
Q Consensus 222 --~-------~~---~k~~-------r--~~~~i~~--~~i~~~~~lLk-----~-------lGV~~I~A----P~EADA 262 (314)
+ .. +... . .+..|+| +....+...|+ . .++.+|.+ |||+|-
T Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEH 211 (899)
T 3fqd_A 132 KEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEH 211 (899)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHSCCCCCGGGSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHH
T ss_pred hHHHHHHHHHHHHhcCCCCccccccccCCCcCccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCCCccHH
Confidence 0 00 1000 0 1223333 22222333222 1 16788876 699999
Q ss_pred HHHHHHhc---------CCeeEEEcCCccEEeecC
Q psy14294 263 QCASLELG---------NHTQGVITDDSDIWLFGA 288 (314)
Q Consensus 263 q~A~L~~~---------g~vdaViS~DSD~llfG~ 288 (314)
-+...-+. +..+.|+|.|+|+++.|.
T Consensus 212 KIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~L 246 (899)
T 3fqd_A 212 KIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGL 246 (899)
T ss_dssp HHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhh
Confidence 99876653 357789999999999984
No 15
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=72.58 E-value=29 Score=29.99 Aligned_cols=101 Identities=13% Similarity=0.051 Sum_probs=59.0
Q ss_pred CEEEeeHHHHHHHHHHHhhhhCCCCCchHHHHHHHHHHHHHHhCCCeeEEEeeCCCccchhhhhhhhhhhhHHHHHHhcc
Q psy14294 147 VDLISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGK 226 (314)
Q Consensus 147 ~rIaIDas~WL~q~~~a~~~~~G~~~~~~~l~~f~~rL~~Ll~~gI~PIFVFDG~~~~~K~~t~~kR~~~r~~~~~~~~k 226 (314)
..|.|||++-.+..-. +..+ .++++..-+..|...|.++|.||+= .. +...
T Consensus 25 R~IVIDGsNVA~~~g~------~~~F---s~rgI~~aV~yf~~rGh~~v~VfvP---~~-r~~~---------------- 75 (185)
T 3v32_B 25 RPVVIDGSNVAMSHGN------KEVF---SCRGILLAVNWFLERGHTDITVFVP---SW-RKEQ---------------- 75 (185)
T ss_dssp CCEEEEHHHHHHHHTT------TTSE---EHHHHHHHHHHHHHTTCCCEEEEEE---GG-GGSC----------------
T ss_pred CeEEEeCHHHHhhhCC------CCCc---CHHHHHHHHHHHHHcCCCceEEEec---hH-hhhc----------------
Confidence 4699999998774411 1112 2456666678899999999999972 11 1000
Q ss_pred cccccCcccHHHHHHHHHHHHHhCCceEeccc---------hHHHHHHHHHhcCCeeEEEcCCc
Q psy14294 227 QTRLASTITEQMSREAQELLQLFGVPFIVAPG---------EAEAQCASLELGNHTQGVITDDS 281 (314)
Q Consensus 227 ~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~---------EADAq~A~L~~~g~vdaViS~DS 281 (314)
.+....++. ..+.+-|..+|+=++.-.+ .+|.-+..+|.+.-+ .|+|+|.
T Consensus 76 -~~~~~~~~d---~~~L~~L~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~~g-~IVSND~ 134 (185)
T 3v32_B 76 -PRPDVPITD---QHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDG-IVVSNDT 134 (185)
T ss_dssp -CCTTSCEEC---THHHHHHHHTTCEEEECCCC-------CCHHHHHHHHHHHTTC-EEECSCC
T ss_pred -ccccCCCCC---HHHHHHHHHCCCEEECCCcccCCCcccCccHHHHHHHHHHcCC-EEEeCcc
Confidence 000001111 0123344455776665554 489999999976444 5899874
No 16
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=69.42 E-value=1.4 Score=30.03 Aligned_cols=19 Identities=42% Similarity=0.852 Sum_probs=16.3
Q ss_pred cccccccCCCcchhhHHHH
Q psy14294 90 INSEQFSALPPDMRHEILT 108 (314)
Q Consensus 90 ~~s~~~~~~p~~~~~~~~~ 108 (314)
|.-|-|+.||+|++.|||.
T Consensus 16 VD~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 16 VDQEVFKQLPADIQEEILS 34 (48)
T ss_dssp CCGGGTTTSCHHHHHHHTT
T ss_pred CCHHHHHHCcHHHHHHHHh
Confidence 4467899999999999984
No 17
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=60.80 E-value=51 Score=29.36 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=58.7
Q ss_pred CEEEeeHHHHHHHHHHHhhhhCCCCCchHHHHHHHHHHHHHHhCCCeeEEEeeCCCccchhhhhhhhhhhhHHHHHHhcc
Q psy14294 147 VDLISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGK 226 (314)
Q Consensus 147 ~rIaIDas~WL~q~~~a~~~~~G~~~~~~~l~~f~~rL~~Ll~~gI~PIFVFDG~~~~~K~~t~~kR~~~r~~~~~~~~k 226 (314)
..|.|||++-.+..- .+..+ .++++..-+..|...|.++|.||+= .. +..
T Consensus 25 R~IVIDGsNVA~~~g------~~~~F---s~rgI~~aV~yF~~RGh~~V~VfvP---~~-r~~----------------- 74 (223)
T 3v33_A 25 RPVVIDGSNVAMSHG------NKEVF---SCRGILLAVNWFLERGHTDITVFVP---SW-RKE----------------- 74 (223)
T ss_dssp CCEEEEHHHHHHHSS------STTSE---EHHHHHHHHHHHHTTTCCCEEEEEE---GG-GGS-----------------
T ss_pred CeEEEeCHHHHhhhC------CCCCc---CHHHHHHHHHHHHHcCCCceEEEec---hh-hhc-----------------
Confidence 469999999776431 11122 2556666678899999999999951 11 100
Q ss_pred cccccCcccHHHHHHHHHHHHHhCCceEeccch---------HHHHHHHHHhcCCeeEEEcCCc
Q psy14294 227 QTRLASTITEQMSREAQELLQLFGVPFIVAPGE---------AEAQCASLELGNHTQGVITDDS 281 (314)
Q Consensus 227 ~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~E---------ADAq~A~L~~~g~vdaViS~DS 281 (314)
..+....++. ..+.+-|...|+=++.-..+ +|.-+.+++.+.-. .|+|+|-
T Consensus 75 ~~~~~~~~~d---~~~L~~L~k~g~L~~TPs~~v~G~r~~sydD~~iL~~A~~~~g-~IVSND~ 134 (223)
T 3v33_A 75 QPRPDVPITD---QHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDG-IVVSNDT 134 (223)
T ss_dssp CCCTTSCEES---THHHHHHHHTTCEEEECEEEETTEEEECCHHHHHHHHHHHTTC-EEECSCC
T ss_pred cccccCCCCc---HHHHHHHHHCCCEEECCCCCcCCccccccchHHHHHHHHHcCC-EEEeCcc
Confidence 0010111111 12334444567766655553 89999999976444 5888874
No 18
>3mtv_A NSP1B, papain-like cysteine protease; PRRSV, nuclease, hydrol; 2.80A {Porcine reproductive and respiratory svirus}
Probab=56.18 E-value=2.9 Score=36.31 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=39.6
Q ss_pred ccccCCCcchhhHHHHHHHhhccccccccccC-----CCcccccccccccccccccC
Q psy14294 93 EQFSALPPDMRHEILTELLEQRKLSSWHKMHE-----MPQNDQHSMLEFRCNIVINK 144 (314)
Q Consensus 93 ~~~~~~p~~~~~~~~~~~~e~~~~~~w~~i~~-----m~i~~l~~~l~~~~~Ls~~~ 144 (314)
+-|..+|+|++.+=+.-...+-|++-||.-.+ +.||||..+.++.+++.+..
T Consensus 93 ~lF~~~~~ev~~~E~~~A~~fGYqt~~GV~GkYL~RRLQvnGLraV~~p~G~~vv~~ 149 (203)
T 3mtv_A 93 RLLDSLPPEVQYKEIRHANQFGYQTKHGVPGKYLQRRLQVNGLRAVTDTHGPIVIQY 149 (203)
T ss_dssp GGGCSSCHHHHHHHHHHHHHSSCSSTTCCCSHHHHHHHHTTTEEEEECTTCSEEEEE
T ss_pred HHhCCCchhhhhHHHHHHHHhcccCccCcccHHHHHHHhhcceEEEEcCCCCEEEEE
Confidence 45788888888544555566789999998765 47888888888888776665
No 19
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=35.73 E-value=11 Score=29.66 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=20.9
Q ss_pred ccccccccCCCcchhhHHHHHHHhh
Q psy14294 89 DINSEQFSALPPDMRHEILTELLEQ 113 (314)
Q Consensus 89 ~~~s~~~~~~p~~~~~~~~~~~~e~ 113 (314)
+|..+-|..||+||+.|+|.+-|-.
T Consensus 67 ~VDP~VFyeLP~eVQ~ELla~Wr~~ 91 (108)
T 2khu_A 67 DIDPQVFYELPEAVQKELLAEWKRT 91 (108)
T ss_dssp TCCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHccHHHHHHHHHHHHHh
Confidence 4557789999999999999986654
No 20
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.99 E-value=16 Score=28.44 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=15.1
Q ss_pred ccccccCCCcchhhHHHH
Q psy14294 91 NSEQFSALPPDMRHEILT 108 (314)
Q Consensus 91 ~s~~~~~~p~~~~~~~~~ 108 (314)
..++|+.|||+.|-..|.
T Consensus 4 ~~~d~s~LPpeqRkkkL~ 21 (98)
T 2ke4_A 4 MTEDFSHLPPEQQRKRLQ 21 (98)
T ss_dssp CCSCSSSSCHHHHHHHHH
T ss_pred cchhhccCCHHHHHHHHH
Confidence 468999999999987664
No 21
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=29.01 E-value=25 Score=31.00 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred HHHHHHhCCceE-----------eccchHHHHHHHHHhcCC
Q psy14294 243 QELLQLFGVPFI-----------VAPGEAEAQCASLELGNH 272 (314)
Q Consensus 243 ~~lLk~lGV~~I-----------~AP~EADAq~A~L~~~g~ 272 (314)
.+.|+.+||||- .+.-|+||.+|||+..|.
T Consensus 157 ~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvAYLq~Lg~ 197 (203)
T 3mk7_B 157 MSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVAYLQVLGT 197 (203)
T ss_dssp HHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHHHHTTTTT
T ss_pred HHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHHHHHHhCc
Confidence 355666777773 345799999999998763
No 22
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=28.98 E-value=70 Score=26.11 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=26.8
Q ss_pred HHHHH-hCCceEec---cchHHHHHHHHHhcCCeeEEEc
Q psy14294 244 ELLQL-FGVPFIVA---PGEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 244 ~lLk~-lGV~~I~A---P~EADAq~A~L~~~g~vdaViS 278 (314)
.+|.+ .|+++-.- |.|++.|++.+-++|.+|.||-
T Consensus 42 ~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVIn 80 (134)
T 2xw6_A 42 RRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIF 80 (134)
T ss_dssp HHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEEE
Confidence 45555 78876543 3389999999999999998874
No 23
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=27.46 E-value=68 Score=30.74 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.2
Q ss_pred HHHhCCCeeEEEeeCC
Q psy14294 186 KLLFFKIKPVFVFDGG 201 (314)
Q Consensus 186 ~Ll~~gI~PIFVFDG~ 201 (314)
.|...||+++.+++|.
T Consensus 203 lL~~~Gi~v~~~~~~~ 218 (437)
T 3aek_A 203 LLTQLGVGPVRMLPAR 218 (437)
T ss_dssp HHHHTTCCCEEEESCS
T ss_pred HHHHcCCceEEEcCCC
Confidence 3456999999999985
No 24
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=26.76 E-value=1.1e+02 Score=25.63 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHHHHHhCCc-----eEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQLFGVP-----FIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~lGV~-----~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..+..-+.+.|+..|+. ++.-| +|-=-.+..|++.|-.|+|++
T Consensus 25 ~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIa 77 (154)
T 1rvv_A 25 FITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIIT 77 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 56778888999999999974 66677 676677778888887888876
No 25
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=26.31 E-value=1e+02 Score=25.23 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHHHHHHhCCceEecc----------chHHHHHH----HHHhcCCeeEEEcCCccEE
Q psy14294 242 AQELLQLFGVPFIVAP----------GEAEAQCA----SLELGNHTQGVITDDSDIW 284 (314)
Q Consensus 242 ~~~lLk~lGV~~I~AP----------~EADAq~A----~L~~~g~vdaViS~DSD~l 284 (314)
+.+.|...|+.++..| ..+|-.+| .++..--+-.++|.|+|+.
T Consensus 66 ~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~ 122 (165)
T 2qip_A 66 FHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFS 122 (165)
T ss_dssp HHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGH
T ss_pred HHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHH
Confidence 4456666677655433 34443333 2232223446788899875
No 26
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=26.06 E-value=1.1e+02 Score=25.50 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHHHHHhCCc-----eEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQLFGVP-----FIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~lGV~-----~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..+..-+.+.|+..|++ ++.-| +|-=-.+..|++.|-.|+|++
T Consensus 25 ~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIa 77 (154)
T 1hqk_A 25 ALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIA 77 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 56778888999999999974 66677 676677778888887888886
No 27
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=25.56 E-value=87 Score=20.39 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCCCCCCCC
Q psy14294 21 LLKNLLEQQLLNDVL-GKNEMALPPPS 46 (314)
Q Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ 46 (314)
+|+...-+..|.-.+ |+.....||||
T Consensus 13 ~l~~~aak~fv~wL~~~k~r~~~pp~~ 39 (39)
T 1jrj_A 13 QMEEEAVRLFIEWLKNGGPSSGAPPPS 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSSCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 333333334444445 67666667765
No 28
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=24.59 E-value=79 Score=26.56 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHHHHHhCC-----ceEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQLFGV-----PFIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~lGV-----~~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..+..-+.+.|+..|+ .++.-| +|-=-.+..|++.|-.|+|++
T Consensus 23 ~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIa 75 (158)
T 1di0_A 23 DIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVG 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 5677888889999999985 466677 676677778888888888876
No 29
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=24.46 E-value=17 Score=29.08 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=24.9
Q ss_pred CCCccc-cccccccCCCcchhhHHHHHHHhh
Q psy14294 84 DLHSVD-INSEQFSALPPDMRHEILTELLEQ 113 (314)
Q Consensus 84 ~~~~~~-~~s~~~~~~p~~~~~~~~~~~~e~ 113 (314)
+..+-| .=|+.-++|||+.-.|||++||+-
T Consensus 34 ~~~ap~~~IS~~Laslpp~Ql~eiL~qmK~~ 64 (109)
T 2l9b_A 34 NMTTPAMMISSELAKKPKEVQLKFLQKFQEW 64 (109)
T ss_dssp TTSCHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445556 567889999999999999999984
No 30
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=24.34 E-value=1.1e+02 Score=30.10 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=9.8
Q ss_pred CCCeeEEEeeCC
Q psy14294 190 FKIKPVFVFDGG 201 (314)
Q Consensus 190 ~gI~PIFVFDG~ 201 (314)
..+.||||||-.
T Consensus 68 ~pVl~vfildp~ 79 (506)
T 3umv_A 68 SPLAVAFALFPR 79 (506)
T ss_dssp CCEEEEEECCCT
T ss_pred CCEEEEEeccch
Confidence 468999999964
No 31
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=24.21 E-value=93 Score=26.11 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHHHHHhC-C-----ceEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQLFG-V-----PFIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~lG-V-----~~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..+..-+.+.|+..| + .++.-| +|-=-.+..|++.|-.|+|+.
T Consensus 25 ~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIa 78 (156)
T 3nq4_A 25 FINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVA 78 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 567788889999999999 5 566677 787777778888887888876
No 32
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=23.09 E-value=1.2e+02 Score=25.46 Aligned_cols=46 Identities=20% Similarity=0.098 Sum_probs=36.4
Q ss_pred cccHHHHHHHHHHHHH-hCCc-----eEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQL-FGVP-----FIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~-lGV~-----~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..+..-+.+.|+. .|+. ++.-| +|-=-.+..|++.|-.|+|++
T Consensus 30 ~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIa 83 (159)
T 1kz1_A 30 QAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIG 83 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 5677888889999999 8864 77778 676677778888887788876
No 33
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=22.73 E-value=1.2e+02 Score=25.43 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHHHHHhCC----ceEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQLFGV----PFIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~lGV----~~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..+..-+.+.|+..|+ .++.-| +|-=-.+..|++.|-.|+|++
T Consensus 26 ~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIa 77 (156)
T 1c2y_A 26 FVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVC 77 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 5677888889999999996 466778 566666778888887888876
No 34
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=22.33 E-value=97 Score=25.83 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=26.3
Q ss_pred HHHHH-hCCceEe--ccch-HHHHHHHHHhcCCeeEEEc
Q psy14294 244 ELLQL-FGVPFIV--APGE-AEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 244 ~lLk~-lGV~~I~--AP~E-ADAq~A~L~~~g~vdaViS 278 (314)
.+|.+ .|+++-. .-.| ++.|++.+-++|.+|.||-
T Consensus 50 ~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVIn 88 (152)
T 1b93_A 50 NLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIF 88 (152)
T ss_dssp HHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEE
Confidence 44555 7777643 3357 8999999999999998874
No 35
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=22.06 E-value=2.4e+02 Score=27.73 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=14.8
Q ss_pred HHHHH-HhCCCeeEEEeeCCC
Q psy14294 183 RICKL-LFFKIKPVFVFDGGV 202 (314)
Q Consensus 183 rL~~L-l~~gI~PIFVFDG~~ 202 (314)
.+..| ...||+++.+|-|..
T Consensus 174 eikrlL~~~Gi~v~~~~pgg~ 194 (525)
T 3aek_B 174 EVTKLLATMGIKVNVCAPLGA 194 (525)
T ss_dssp HHHHHHHTTTCEEEEEEETTC
T ss_pred HHHHHHHHCCCeEEEEeCCCC
Confidence 34444 459999999999763
No 36
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=21.71 E-value=86 Score=26.30 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=36.0
Q ss_pred cccHHHHHHHHHHHHHhCC-----ceEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQLFGV-----PFIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~lGV-----~~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..+..-+.+.|+..|+ .++.-| +|-=-.+..|++.|-.|+|++
T Consensus 24 ~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIa 76 (157)
T 2obx_A 24 DIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLG 76 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 4677888889999999986 466677 676677778888887888876
No 37
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=20.72 E-value=2.1e+02 Score=20.90 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCceEeccchHHHHHHHHHhcCCeeEEEc
Q psy14294 236 EQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 236 ~~~i~~~~~lLk~lGV~~I~AP~EADAq~A~L~~~g~vdaViS 278 (314)
+.....+..+|...|...+.....+...+..+......|.|+.
T Consensus 15 ~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~ 57 (129)
T 3h1g_A 15 STMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLIT 57 (129)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEE
Confidence 4455567778888887533333333333444544444566665
Done!