Query psy14294
Match_columns 314
No_of_seqs 187 out of 1134
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 16:09:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14294.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14294hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rxwa2 c.120.1.2 (A:3-219) Fl 100.0 9.3E-43 6.8E-47 313.2 14.9 170 129-299 2-189 (217)
2 d1a77a2 c.120.1.2 (A:2-208) Fl 100.0 7.1E-43 5.2E-47 312.1 14.0 174 138-312 13-204 (207)
3 d1ul1x2 c.120.1.2 (X:2-217) Fl 100.0 3.1E-43 2.2E-47 314.8 11.4 185 126-313 1-214 (216)
4 d1b43a2 c.120.1.2 (A:1-219) Fl 100.0 4.1E-41 3E-45 303.0 14.0 161 138-299 13-191 (219)
5 d1cmwa2 c.120.1.2 (A:10-173) 5 99.1 3.7E-10 2.7E-14 95.4 13.6 151 146-314 3-163 (164)
6 d1xo1a2 c.120.1.2 (A:19-185) T 98.6 4.8E-08 3.5E-12 82.5 9.3 144 147-314 3-166 (167)
7 d1tfra2 c.120.1.2 (A:12-180) T 98.5 4.7E-07 3.4E-11 76.6 11.2 129 146-287 2-151 (169)
8 d1owla2 c.28.1.1 (A:3-204) DNA 61.6 11 0.00083 30.0 7.5 18 240-257 80-97 (202)
9 d1np7a2 c.28.1.1 (A:1-204) Cry 58.5 8.5 0.00062 30.7 6.1 10 191-200 33-42 (204)
10 d2j07a2 c.28.1.1 (A:2-171) DNA 46.3 26 0.0019 27.1 7.1 13 188-200 24-36 (170)
11 d1vd6a1 c.1.18.3 (A:8-224) Put 30.4 16 0.0011 28.4 3.2 42 242-284 171-212 (217)
12 d1o1za_ c.1.18.3 (A:) Hypothet 29.3 16 0.0012 28.9 3.0 43 239-284 179-222 (226)
13 d1nqua_ c.16.1.1 (A:) Lumazine 27.8 47 0.0034 25.8 5.6 46 233-278 25-77 (154)
14 d1ufma_ a.4.5.47 (A:) COP9 sig 23.6 71 0.0051 21.9 5.4 44 242-289 33-76 (84)
15 d1rvv1_ c.16.1.1 (1:) Lumazine 20.8 73 0.0053 24.5 5.5 46 233-278 25-77 (154)
16 d1b93a_ c.24.1.2 (A:) Methylgl 20.4 34 0.0025 26.3 3.3 34 244-277 50-87 (148)
No 1
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=100.00 E-value=9.3e-43 Score=313.24 Aligned_cols=170 Identities=27% Similarity=0.364 Sum_probs=145.0
Q ss_pred ccccccccc-ccccccCCCCEEEeeHHHHHHHHHHHhhhhCCCCCc------hHHHHHHHHHHHHHHhCCCeeEEEeeCC
Q psy14294 129 DQHSMLEFR-CNIVINKLLVDLISDVSIWLHQLTKGTHDLAGGSVP------NAHLIGLYHRICKLLFFKIKPVFVFDGG 201 (314)
Q Consensus 129 ~l~~~l~~~-~~Ls~~~~g~rIaIDas~WL~q~~~a~~~~~G~~~~------~~~l~~f~~rL~~Ll~~gI~PIFVFDG~ 201 (314)
+|+.++..+ .+|+.++ |++|||||++||||++.+|+...|.++. ++++.+|++++..|+++||+|||||||.
T Consensus 2 ~~~~l~~~~~~~l~~l~-Gk~vAIDas~wL~k~l~~~~~~~~~~l~~~~~~~~~~l~~~~~ri~~l~~~~I~pifVFDG~ 80 (217)
T d1rxwa2 2 DIGDLFEREEVELEYFS-GKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGE 80 (217)
T ss_dssp TGGGGCCCEECCGGGGT-TCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHTCEEEEEECCS
T ss_pred ChhHhccCcccCHHHhC-CCEEEEECHHHHHHHHHHhccccCCchhhccCCccHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 345555544 4899999 9999999999999999888765444331 2599999999999999999999999999
Q ss_pred CccchhhhhhhhhhhhHHHHHHh-----------cccccccCcccHHHHHHHHHHHHHhCCceEeccchHHHHHHHHHhc
Q psy14294 202 VPQLKKQTISTLEKDRDQLLLER-----------GKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 270 (314)
Q Consensus 202 ~~~~K~~t~~kR~~~r~~~~~~~-----------~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~EADAq~A~L~~~ 270 (314)
+|+.|..|..+|++++.++++.+ .+....+..++++++..++++|+.+|||||+||||||||||||+++
T Consensus 81 ~p~~K~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~Ap~EAeaqcA~L~~~ 160 (217)
T d1rxwa2 81 PPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAK 160 (217)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHT
T ss_pred CCcchhhHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhccCCHHHHHHHHHHHHHcCceEEecCchHHHHHHHHHhC
Confidence 99999999999988887665322 1123346678999999999999999999999999999999999999
Q ss_pred CCeeEEEcCCccEEeecCCeeeeeccCCC
Q psy14294 271 NHTQGVITDDSDIWLFGARTVYKNFFDKK 299 (314)
Q Consensus 271 g~vdaViS~DSD~llfG~~~Vi~~l~~~~ 299 (314)
|+||+|+|+|||+|+|||++||++|+..+
T Consensus 161 g~vd~v~seDsD~l~fG~~~vir~l~~~~ 189 (217)
T d1rxwa2 161 GDVEYTGSQDYDSLLFGSPRLARNLAITG 189 (217)
T ss_dssp TSSSEEECSSSHHHHTTCSEEEESCCC--
T ss_pred CCeEEEEecccceeeeCCCEEEEeccccc
Confidence 99999999999999999999999999866
No 2
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=7.1e-43 Score=312.11 Aligned_cols=174 Identities=25% Similarity=0.314 Sum_probs=152.6
Q ss_pred ccccccCCCCEEEeeHHHHHHHHHHHhhhhCCCCC------chHHHHHHHHHHHHHHhCCCeeEEEeeCCCccchhhhhh
Q psy14294 138 CNIVINKLLVDLISDVSIWLHQLTKGTHDLAGGSV------PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS 211 (314)
Q Consensus 138 ~~Ls~~~~g~rIaIDas~WL~q~~~a~~~~~G~~~------~~~~l~~f~~rL~~Ll~~gI~PIFVFDG~~~~~K~~t~~ 211 (314)
.+|+.++ |++|||||++||||++.+++...|.++ .++++.++|.++..|+++||+|||||||.+|+.|..+..
T Consensus 13 i~l~~l~-gk~vaIDas~~L~~~l~~~~~~~~~~l~~~~g~~~~~l~~~~~~~~~ll~~~I~pifVFDG~~~~~K~~~~~ 91 (207)
T d1a77a2 13 ISFEDLK-GKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRK 91 (207)
T ss_dssp CCSGGGT-TCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCCTTCCCCSSCC
T ss_pred eCHHHhC-CCEEEEEChHHHHHHHHHhhcccCchhhhccCCcCHHHHHHHHHHHHHHHcCCeEEEEECCCCchhhhhhHH
Confidence 4788888 999999999999999988765444432 134899999999999999999999999999999999999
Q ss_pred hhhhhhHHHH------------HHhcccccccCcccHHHHHHHHHHHHHhCCceEeccchHHHHHHHHHhcCCeeEEEcC
Q psy14294 212 TLEKDRDQLL------------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITD 279 (314)
Q Consensus 212 kR~~~r~~~~------------~~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~EADAq~A~L~~~g~vdaViS~ 279 (314)
+|++.+..+. ++..+..+.+..+++.+++.++++|+.+|||||+||||||||||+|+++|+||+|+|+
T Consensus 92 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ll~~~gi~yi~Ap~EAeaqcA~L~~~g~vd~v~se 171 (207)
T d1a77a2 92 VRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQ 171 (207)
T ss_dssp SSCSSSSSSSCCCCCCCSHHHHSSTTSSSSTTCSCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HhHHHHHHHHHHHHhhhccccHHHHhhhcccceecCHHHHHHHHHHHHHcCCceEecCccHHHHHHHHHHcCCeEEEEec
Confidence 8877665432 1223445667889999999999999999999999999999999999999999999999
Q ss_pred CccEEeecCCeeeeeccCCCCcEEEEehhhhhh
Q psy14294 280 DSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRY 312 (314)
Q Consensus 280 DSD~llfG~~~Vi~~l~~~~~~v~~y~~~~i~~ 312 (314)
|||+|+|||++||++++..++.+++|+.++|.+
T Consensus 172 DsD~l~yG~~~vir~l~~~~~~~~~~~~~~iL~ 204 (207)
T d1a77a2 172 DYDALLYGAPRVVRNLTTTKEMPELIELNEVLE 204 (207)
T ss_dssp SSGGGGGTCSEEEESSSCCSSCCEEEEHHHHHH
T ss_pred ccceeccCCCEEEEecccCCCcEEEEEHHHHHH
Confidence 999999999999999999999999999999875
No 3
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=3.1e-43 Score=314.85 Aligned_cols=185 Identities=26% Similarity=0.386 Sum_probs=148.4
Q ss_pred Ccccccccccccc-------cccccCCCCEEEeeHHHHHHHHHHHhhhh-------CCCCCchHHHHHHHHHHHHHHhCC
Q psy14294 126 PQNDQHSMLEFRC-------NIVINKLLVDLISDVSIWLHQLTKGTHDL-------AGGSVPNAHLIGLYHRICKLLFFK 191 (314)
Q Consensus 126 ~i~~l~~~l~~~~-------~Ls~~~~g~rIaIDas~WL~q~~~a~~~~-------~G~~~~~~~l~~f~~rL~~Ll~~g 191 (314)
||+|||+++.+.+ +|+.++ |++||||+++||||++.+++.. .|.+ +.++.+++.++..|+++|
T Consensus 1 GIkgL~~~l~~~~~~~i~~~~l~~l~-gk~vaIDas~~l~~~l~~~~~~~~~l~~~~~~~--~~~l~~~~~~~~~l~~~~ 77 (216)
T d1ul1x2 1 GIQGLAKLIADVAPSAIRENDIKSYF-GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET--TSHLMGMFYRTIRMMENG 77 (216)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGT-TCCEEEEHHHHHHHHHSCC-------------C--CHHHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHhCcCceEEecHHHcC-CCEEEEEeHHHHHHHHHHhccccchhhccCCCC--cHHHHHHHHHHHHHHHcC
Confidence 7999999998753 667777 9999999999999998766431 2222 248999999999999999
Q ss_pred CeeEEEeeCCCccchhhhhhhhhhhhHHHHH------------HhcccccccCcccHHHHHHHHHHHHHhCCceEeccch
Q psy14294 192 IKPVFVFDGGVPQLKKQTISTLEKDRDQLLL------------ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGE 259 (314)
Q Consensus 192 I~PIFVFDG~~~~~K~~t~~kR~~~r~~~~~------------~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~E 259 (314)
|+|||||||.+|+.|..+..+|+.+|.++.. .+.+..+....+++.++..++++|+.+|||||+||||
T Consensus 78 I~pifVFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ll~~~gv~~i~Ap~E 157 (216)
T d1ul1x2 78 IKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSE 157 (216)
T ss_dssp CCEEEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSC
T ss_pred CeEEEEEcCCCCccccchhhhhhhhHHHhhhhHHhhhhcchHHHHHHhhccCeeccHHHHHHHHHHHHhcCeeeEeccch
Confidence 9999999999999999999998887765432 1233445567789999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeeEEEcCCccEEeecCCeeeeeccCCCC---cEEEEehhhhhhc
Q psy14294 260 AEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS---HVLRYTAPDIRYY 313 (314)
Q Consensus 260 ADAq~A~L~~~g~vdaViS~DSD~llfG~~~Vi~~l~~~~~---~v~~y~~~~i~~~ 313 (314)
||||||+|+++|+||+|+|+|||+|+|||++||++++..+. ++++|++++|.+.
T Consensus 158 Adaq~A~L~~~g~vd~v~S~DsD~l~fG~~~vi~~~~~~~~~~~~~~~~~~~~il~~ 214 (216)
T d1ul1x2 158 AEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQE 214 (216)
T ss_dssp HHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEccccceeccCCcEEEEecccccCCCCcEEEEEHHHHHHh
Confidence 99999999999999999999999999999999999988764 7999999999763
No 4
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00 E-value=4.1e-41 Score=303.03 Aligned_cols=161 Identities=28% Similarity=0.397 Sum_probs=141.6
Q ss_pred ccccccCCCCEEEeeHHHHHHHHHHHhhhhCCCCC------chHHHHHHHHHHHHHHhCCCeeEEEeeCCCccchhhhhh
Q psy14294 138 CNIVINKLLVDLISDVSIWLHQLTKGTHDLAGGSV------PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS 211 (314)
Q Consensus 138 ~~Ls~~~~g~rIaIDas~WL~q~~~a~~~~~G~~~------~~~~l~~f~~rL~~Ll~~gI~PIFVFDG~~~~~K~~t~~ 211 (314)
.+|+.++ |++||||+++||||++.+++...|.++ .++|+.+|++|+..|+++||+|||||||.+|+.|..|..
T Consensus 13 ~~l~~l~-gk~iaIDas~~L~k~l~~~~~~~~~~l~~~~~~~~~~l~~~~~r~~~Ll~~~I~pVFVFDG~~~~~K~~~~~ 91 (219)
T d1b43a2 13 IELENLY-GKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELE 91 (219)
T ss_dssp CCGGGGT-TCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCSCCCCSSCSST
T ss_pred cCHHHcC-CCEEEEEChHHHHHHHHHhcccccchhhhccCCCchHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHhhhHH
Confidence 4888998 999999999999999888866544332 235999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHH------------HhcccccccCcccHHHHHHHHHHHHHhCCceEeccchHHHHHHHHHhcCCeeEEEcC
Q psy14294 212 TLEKDRDQLLL------------ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITD 279 (314)
Q Consensus 212 kR~~~r~~~~~------------~~~k~~r~~~~i~~~~i~~~~~lLk~lGV~~I~AP~EADAq~A~L~~~g~vdaViS~ 279 (314)
+|+..+.++.+ ++.+..+....+++.++..++++|+.+|||||+||||||||||+|+++|+||+|+|+
T Consensus 92 ~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~lL~~~gv~~i~Ap~EAdaqcA~L~~~g~vd~v~Se 171 (219)
T d1b43a2 92 KRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQ 171 (219)
T ss_dssp TCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred hhhhhHHHHHHHhhhhhhccchhhhhhhhcccccCCHHHHHHHHHHHHHcCCceeeCchHHHHHHHHHHhcCCeEEEEec
Confidence 99877765432 123345667889999999999999999999999999999999999999999999999
Q ss_pred CccEEeecCCeeeeeccCCC
Q psy14294 280 DSDIWLFGARTVYKNFFDKK 299 (314)
Q Consensus 280 DSD~llfG~~~Vi~~l~~~~ 299 (314)
|||+|+|||++||++|+..+
T Consensus 172 DsD~L~fG~~~vl~~l~~~~ 191 (219)
T d1b43a2 172 DYDSLLFGAPRLVRNLTITG 191 (219)
T ss_dssp SSHHHHTTCSEEEESTTTCE
T ss_pred ccceeeeCCCEEEEeccccc
Confidence 99999999999999999866
No 5
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=99.12 E-value=3.7e-10 Score=95.39 Aligned_cols=151 Identities=18% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCEEEeeHHHHHHHHHHHhh---hhCCCCCchHHHHHHHHHHHHHH-hCCCeeEEEeeCCCccchhhhhhhhhhhhHHHH
Q psy14294 146 LVDLISDVSIWLHQLTKGTH---DLAGGSVPNAHLIGLYHRICKLL-FFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLL 221 (314)
Q Consensus 146 g~rIaIDas~WL~q~~~a~~---~~~G~~~~~~~l~~f~~rL~~Ll-~~gI~PIFVFDG~~~~~K~~t~~kR~~~r~~~~ 221 (314)
+..+.|||++++|+.+++.. ...|.++. .+.+|++.+..++ ..+-..++|||+.....+.+....
T Consensus 3 ~~~lLIDg~~l~~R~~~a~~~~~~~~g~~~~--~i~gf~~~l~~~~~~~~~~~~v~~d~~~~~~R~~l~p~--------- 71 (164)
T d1cmwa2 3 GRVLLVDGHHLAYRTFHALKGLTTSRGEPVQ--AVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGG--------- 71 (164)
T ss_dssp EEEEEEETTHHHHHHHTSSTTCBCTTSCBCH--HHHHHHHHHHHHHHHCCSEEEEECCCSSSCTTGGGGST---------
T ss_pred CeEEEEeChHHHHHHHHcCCcccCCCCCeeH--HHHHHHHHHHHHHhcCCceEEEEEecccccchhhhhhh---------
Confidence 45688999999999987763 34566653 7888888776655 466778888887654332222111
Q ss_pred HHhcccccc-cCcccHHHHHHHHHHHHHhCCceEecc-chHHHHHHHHHhc----CCeeEEEcCCccEEeecCCeeeeec
Q psy14294 222 LERGKQTRL-ASTITEQMSREAQELLQLFGVPFIVAP-GEAEAQCASLELG----NHTQGVITDDSDIWLFGARTVYKNF 295 (314)
Q Consensus 222 ~~~~k~~r~-~~~i~~~~i~~~~~lLk~lGV~~I~AP-~EADAq~A~L~~~----g~vdaViS~DSD~llfG~~~Vi~~l 295 (314)
+|..|. .......+...+.+++..+|++++..| +|||..+|+|++. |.-..|+|.|.|+++.=.+.|.. +
T Consensus 72 ---YK~~R~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~EADDvIa~la~~~~~~~~~v~IvS~DkD~~QLv~~~v~i-~ 147 (164)
T d1cmwa2 72 ---YKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHV-L 147 (164)
T ss_dssp ---TTSCCCCCCSSHHHHHHHHHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHTTEEEEEECSSGGGGGSCCSSCEE-E
T ss_pred ---hhhccccCchhHHHHHHHHHHHHhhcCceEEEecCcchHHHHHHHHHHhccccceEEEecCCCChHHheeCCEEE-E
Confidence 333443 344556777889999999999999988 7999999999863 43336999999999885443322 1
Q ss_pred cCCCCcEEEEehhhhhhcC
Q psy14294 296 FDKKSHVLRYTAPDIRYYF 314 (314)
Q Consensus 296 ~~~~~~v~~y~~~~i~~~~ 314 (314)
+..+ ..|+.+.+..+|
T Consensus 148 ~~~~---~~~~~~~v~ek~ 163 (164)
T d1cmwa2 148 HPEG---YLITPAWLWEKY 163 (164)
T ss_dssp CSSS---SEECHHHHHHSS
T ss_pred eCCC---EEECHHHHHhhh
Confidence 2222 246767666554
No 6
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=98.63 E-value=4.8e-08 Score=82.47 Aligned_cols=144 Identities=15% Similarity=0.043 Sum_probs=80.5
Q ss_pred CEEEeeHHHHHHHHHHHhhhhCCCCCchHHHHHHHHHHHHHHh-CCCee-EEEeeCCCccchhhhhhhhhhhhHHHHHHh
Q psy14294 147 VDLISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLF-FKIKP-VFVFDGGVPQLKKQTISTLEKDRDQLLLER 224 (314)
Q Consensus 147 ~rIaIDas~WL~q~~~a~~~~~G~~~~~~~l~~f~~rL~~Ll~-~gI~P-IFVFDG~~~~~K~~t~~kR~~~r~~~~~~~ 224 (314)
..+.|||++.+||++++ |.+.. ...+|+..+..|.+ .+... |++||+..+. .|..... .
T Consensus 3 ~~lliDg~~l~~R~~~~-----~~~~~--~~~~f~~~l~~l~~~~~~~~iiv~~d~~~~~-~R~~l~p-----------~ 63 (167)
T d1xo1a2 3 NLMIVDGTNLGFRFKHN-----NSKKP--FASSYVSTIQSLAKSYSARTTIVLGDKGKSV-FRLEHLP-----------E 63 (167)
T ss_dssp EEEEEEHHHHHTTC------------C--CHHHHHHHHHHHHHHTTEEEEEEECCBSCCH-HHHTTCT-----------T
T ss_pred eEEEEcChHHHHHHHHc-----CCCcC--HHHHHHHHHHHHHHHcCCCEEEEEEeCCCCC-cccccch-----------h
Confidence 45789999999998653 22221 45677777777764 66654 6778864332 2222111 0
Q ss_pred cccccc------------cCcccHHHHHHHHHHHHHhCCceEecc-chHHHHHHHHHh----cCCeeEEEcCCccEEeec
Q psy14294 225 GKQTRL------------ASTITEQMSREAQELLQLFGVPFIVAP-GEAEAQCASLEL----GNHTQGVITDDSDIWLFG 287 (314)
Q Consensus 225 ~k~~r~------------~~~i~~~~i~~~~~lLk~lGV~~I~AP-~EADAq~A~L~~----~g~vdaViS~DSD~llfG 287 (314)
+|..|. ........+..+..+ ..+|++++..| +|||..+|+|++ .|.-..|+|.|.|+++.=
T Consensus 64 YKanR~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~EADDiIa~l~~~~~~~~~~v~IvS~DkD~~QLv 142 (167)
T d1xo1a2 64 YAGNRDEKYAQRTEEEKALDEQFFEYLKDAFEL-CKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLL 142 (167)
T ss_dssp CC--------------------CHHHHHHHHHH-HHTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGC
T ss_pred hhhcCCCCchhcccchhHHHHHHHHHHHHHHHH-hhccccEEEeccccchhHHHHHHHHhhcCCCEEEEEeCCccHHHhe
Confidence 121111 011112222233333 34699999988 999999999996 244346999999998875
Q ss_pred CCee-eeeccCCCCcEEEEehhhhhhcC
Q psy14294 288 ARTV-YKNFFDKKSHVLRYTAPDIRYYF 314 (314)
Q Consensus 288 ~~~V-i~~l~~~~~~v~~y~~~~i~~~~ 314 (314)
.++| +.+.... ..|+.+.+..+|
T Consensus 143 ~~~v~~~~~~~k----k~~~~~~~~e~~ 166 (167)
T d1xo1a2 143 TDKVSRFSFTTR----REYHLRDMYEHH 166 (167)
T ss_dssp BTTEEEECTTTC----CEECGGGHHHHH
T ss_pred eCCEEEEeCCCC----EEEchhhhhhcC
Confidence 5433 2232222 356777666543
No 7
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]}
Probab=98.48 E-value=4.7e-07 Score=76.63 Aligned_cols=129 Identities=16% Similarity=0.021 Sum_probs=77.1
Q ss_pred CCEEEeeHHHHHHHHHHHh-hhhCCCCCchHHHHH-HHHHHH----HHHhC-CCeeEEEeeCCCccchhhhhhhhhhhhH
Q psy14294 146 LVDLISDVSIWLHQLTKGT-HDLAGGSVPNAHLIG-LYHRIC----KLLFF-KIKPVFVFDGGVPQLKKQTISTLEKDRD 218 (314)
Q Consensus 146 g~rIaIDas~WL~q~~~a~-~~~~G~~~~~~~l~~-f~~rL~----~Ll~~-gI~PIFVFDG~~~~~K~~t~~kR~~~r~ 218 (314)
+.-+.||++..+++.+.+. ....+.+ ...+++ +++-|. .+... +-+.||+|||.....-|.....
T Consensus 2 ~~~~liD~s~~~~~~~~~~~~~~~~~~--~~~~~h~~lnsi~~~~k~~~~~~p~~viv~~D~~~~~~~R~~l~p------ 73 (169)
T d1tfra2 2 EGICLIDFSQIALSTALVNFPDKEKIN--LSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAY------ 73 (169)
T ss_dssp CEEEEEEHHHHHHHHHHHHSCTTSCCC--HHHHHHHHHHHHHHHHHHHHHTTEEEEEEECCCCTTCCGGGGTCT------
T ss_pred CCEEEEechHHHHHHHHHhccCCCCCC--hhHHHHHHHHHHHHHHHHhhhcCCCeEEEEEeCCCCCchhhhhHH------
Confidence 3457899999999987654 2223333 223433 223333 33333 4568999999654433322211
Q ss_pred HHHHHhccccccc-----Cc----ccHHHHHHHHHHHHHhCCceEecc-chHHHHHHHHHhc----CCeeEEEcCCccEE
Q psy14294 219 QLLLERGKQTRLA-----ST----ITEQMSREAQELLQLFGVPFIVAP-GEAEAQCASLELG----NHTQGVITDDSDIW 284 (314)
Q Consensus 219 ~~~~~~~k~~r~~-----~~----i~~~~i~~~~~lLk~lGV~~I~AP-~EADAq~A~L~~~----g~vdaViS~DSD~l 284 (314)
+ +|..|.. .. ....+...+.++++.+|++.+..| +|||..+|+|++. |.--.|+|.|.|++
T Consensus 74 ~-----YKanR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~EADDvIa~la~~~~~~~~~vvIvS~DkD~~ 148 (169)
T d1tfra2 74 Y-----YKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFT 148 (169)
T ss_dssp T-----TTC---------CCCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECCCGGGG
T ss_pred H-----HhhCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhhhccccCCcccccHHHHHHHHHHHCCCcEEEEeCCCCHH
Confidence 0 2222211 01 112233456788899999999888 9999999999963 53226899999999
Q ss_pred eec
Q psy14294 285 LFG 287 (314)
Q Consensus 285 lfG 287 (314)
+.=
T Consensus 149 QLv 151 (169)
T d1tfra2 149 QLH 151 (169)
T ss_dssp GGT
T ss_pred HhC
Confidence 863
No 8
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=61.65 E-value=11 Score=30.00 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCceEecc
Q psy14294 240 REAQELLQLFGVPFIVAP 257 (314)
Q Consensus 240 ~~~~~lLk~lGV~~I~AP 257 (314)
..+.++++..+|..|.+.
T Consensus 80 ~~l~~l~~~~~i~~v~~~ 97 (202)
T d1owla2 80 HLIPQLAQQLQAEAVYWN 97 (202)
T ss_dssp HHHHHHHHHTTCSEEEEE
T ss_pred ccchhhccccccceeEEe
Confidence 446677777787777644
No 9
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=58.51 E-value=8.5 Score=30.74 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=8.5
Q ss_pred CCeeEEEeeC
Q psy14294 191 KIKPVFVFDG 200 (314)
Q Consensus 191 gI~PIFVFDG 200 (314)
.|.||||||-
T Consensus 33 ~vi~vyi~dp 42 (204)
T d1np7a2 33 AITAVYCYDP 42 (204)
T ss_dssp EEEEEEEECG
T ss_pred cEEEEEEECc
Confidence 5889999994
No 10
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=46.32 E-value=26 Score=27.12 Aligned_cols=13 Identities=15% Similarity=0.002 Sum_probs=10.6
Q ss_pred HhCCCeeEEEeeC
Q psy14294 188 LFFKIKPVFVFDG 200 (314)
Q Consensus 188 l~~gI~PIFVFDG 200 (314)
....+.||||||-
T Consensus 24 ~~~~vi~vfi~d~ 36 (170)
T d2j07a2 24 ARGPVVGLVVLDP 36 (170)
T ss_dssp TTSCEEEEEEECH
T ss_pred hcCCEEEEEEEec
Confidence 4568999999994
No 11
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=30.44 E-value=16 Score=28.37 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=28.8
Q ss_pred HHHHHHHhCCceEeccchHHHHHHHHHhcCCeeEEEcCCccEE
Q psy14294 242 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIW 284 (314)
Q Consensus 242 ~~~lLk~lGV~~I~AP~EADAq~A~L~~~g~vdaViS~DSD~l 284 (314)
+.+.++..|++++.-...-..++.++...| ||+|+|++-|.+
T Consensus 171 ~v~~~~~~g~~v~~wTvn~~~~~~~~~~~g-vdgI~TD~P~~l 212 (217)
T d1vd6a1 171 AVAGWRKRGLFVVAWTVNEEGEARRLLALG-LDGLIGDRPEVL 212 (217)
T ss_dssp HHHHHHHTTCEEEEECCCCHHHHHHHHHTT-CSEEEESCHHHH
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHhCC-CCEEEECCHHHH
Confidence 456678889998765533344566666666 689999876544
No 12
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]}
Probab=29.30 E-value=16 Score=28.86 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCceEeccc-hHHHHHHHHHhcCCeeEEEcCCccEE
Q psy14294 239 SREAQELLQLFGVPFIVAPG-EAEAQCASLELGNHTQGVITDDSDIW 284 (314)
Q Consensus 239 i~~~~~lLk~lGV~~I~AP~-EADAq~A~L~~~g~vdaViS~DSD~l 284 (314)
...+.+.++..|++++.-.- ++ ..+.+.+.| ||+|+|++-|++
T Consensus 179 ~~~~v~~~~~~g~~v~~wTVN~~--~~~~~l~~g-VdgIiTD~P~~~ 222 (226)
T d1o1za_ 179 AVEVLRSFRKKGIVIFVWTLNDP--EIYRKIRRE-IDGVITDEVELF 222 (226)
T ss_dssp HHHHHHHHHHTTCEEEEESCCCH--HHHHHHGGG-CSEEEESCHHHH
T ss_pred hHHHHHHHHHCCCEEEEECCChH--HHHHHHHcC-CCEEEECcHHHH
Confidence 34566778889998875431 22 233445566 899999766543
No 13
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=27.76 E-value=47 Score=25.77 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHHHHHhCCc-----eEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQLFGVP-----FIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~lGV~-----~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..|+..+.+.|+..|++ ++..| +|-=..+..+.+++-.|+|++
T Consensus 25 ~I~~~Ll~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~~~~~l~~~~~~daiIa 77 (154)
T d1nqua_ 25 ALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIA 77 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCChhheeeEEeCCHHHhHHHHHHHHhhcCCCeEEE
Confidence 56778888899999999885 55677 677777778888777777765
No 14
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.59 E-value=71 Score=21.91 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=36.6
Q ss_pred HHHHHHHhCCceEeccchHHHHHHHHHhcCCeeEEEcCCccEEeecCC
Q psy14294 242 AQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 289 (314)
Q Consensus 242 ~~~lLk~lGV~~I~AP~EADAq~A~L~~~g~vdaViS~DSD~llfG~~ 289 (314)
+..+-+.+|++ +.|++..++.|...|.++|-|-.-..++.|..+
T Consensus 33 l~~la~~l~l~----~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~ 76 (84)
T d1ufma_ 33 FEELGALLEIP----AAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp HHHHHHHTTSC----HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHCCC----HHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCC
Confidence 45666777875 679999999999999999999888888888764
No 15
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=20.77 E-value=73 Score=24.54 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHHHHhCCc-----eEecc--chHHHHHHHHHhcCCeeEEEc
Q psy14294 233 TITEQMSREAQELLQLFGVP-----FIVAP--GEAEAQCASLELGNHTQGVIT 278 (314)
Q Consensus 233 ~i~~~~i~~~~~lLk~lGV~-----~I~AP--~EADAq~A~L~~~g~vdaViS 278 (314)
.++..|+..+.+.|...|+. ++..| +|-=..+..+...+..|+|++
T Consensus 25 ~I~~~l~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~~~~~~~~~~~~daiIa 77 (154)
T d1rvv1_ 25 FITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIIT 77 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccCcEEEEECceeeHHHHHHHHhcccccceEEE
Confidence 56778888899999999874 56777 677667778887777777776
No 16
>d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia coli [TaxId: 562]}
Probab=20.37 E-value=34 Score=26.31 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=25.5
Q ss_pred HHHHHhCCceE----eccchHHHHHHHHHhcCCeeEEE
Q psy14294 244 ELLQLFGVPFI----VAPGEAEAQCASLELGNHTQGVI 277 (314)
Q Consensus 244 ~lLk~lGV~~I----~AP~EADAq~A~L~~~g~vdaVi 277 (314)
+.|.+.|++++ ..+.+++.+++.+-.+|.||.||
T Consensus 50 ~~L~~~g~~~~~~~~~~~~gg~p~I~d~I~~g~I~lVI 87 (148)
T d1b93a_ 50 NLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLI 87 (148)
T ss_dssp HHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhcCCcceEEEeCCCCCCcCHHHHHHcCCccEEE
Confidence 44555555432 24689999999999999999999
Done!