Your job contains 1 sequence.
>psy14294
AQRKTLKSKAASNADKVRSDLLKNLLEQQLLNDVLGKNEMALPPPSVSREVDMFELPPAP
AQTVQDEEEDSDSDDTEAKFRYADLHSVDINSEQFSALPPDMRHEILTELLEQRKLSSWH
KMHEMPQNDQHSMLEFRCNIVINKLLVDLISDVSIWLHQLTKGTHDLAGGSVPNAHLIGL
YHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLASTITEQMSR
EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS
HVLRYTAPDIRYYF
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14294
(314 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 274 1.2e-42 2
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 274 3.3e-42 2
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 296 2.2e-39 2
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 221 9.9e-36 2
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 216 1.8e-34 2
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 278 1.2e-31 2
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 277 1.9e-31 2
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 276 6.1e-31 2
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 274 6.4e-31 2
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 273 1.3e-30 2
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 274 1.4e-30 2
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 270 3.5e-30 2
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 270 4.7e-30 2
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 256 4.6e-22 2
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 187 2.0e-21 2
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 187 2.5e-20 2
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 187 2.5e-20 2
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 239 4.0e-20 2
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 236 8.3e-20 2
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 225 1.9e-19 2
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 225 1.9e-19 2
UNIPROTKB|I3LHP7 - symbol:I3LHP7 "Uncharacterized protein... 229 4.0e-19 1
RGD|1586176 - symbol:Ercc5 "excision repair cross-complem... 229 4.0e-19 1
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 232 3.4e-18 1
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 219 3.8e-18 2
UNIPROTKB|Q9HD60 - symbol:ERCC5 "DNA repair protein-compl... 217 7.5e-18 1
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 228 9.1e-18 1
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 214 1.6e-17 1
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 222 4.1e-17 1
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 221 5.2e-17 1
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 202 2.9e-16 1
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 208 5.1e-15 1
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 194 2.1e-13 1
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 194 2.1e-13 1
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 194 2.2e-13 1
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 193 4.5e-13 1
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 188 1.2e-12 1
WB|WBGene00020442 - symbol:gen-1 species:6239 "Caenorhabd... 184 5.4e-12 1
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 182 6.9e-12 1
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 181 9.1e-12 1
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 180 1.2e-11 1
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 184 1.2e-11 1
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 184 1.2e-11 1
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 178 2.1e-11 1
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 178 2.1e-11 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 178 2.1e-11 1
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 177 2.8e-11 1
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 177 2.8e-11 1
DICTYBASE|DDB_G0294290 - symbol:DDB_G0294290 "xeroderma p... 182 3.8e-11 1
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 176 4.1e-11 1
UNIPROTKB|F5H1Y3 - symbol:FEN1 "Flap endonuclease 1" spec... 153 1.1e-10 1
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 174 1.5e-10 1
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 170 1.8e-10 1
UNIPROTKB|G4NE19 - symbol:MGG_00841 "Exonuclease 1" speci... 175 1.8e-10 1
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 173 2.1e-10 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 169 2.5e-10 1
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 169 2.5e-10 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 168 2.7e-10 1
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 172 3.7e-10 1
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 167 4.9e-10 1
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 171 5.3e-10 1
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 166 2.1e-09 1
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 161 2.3e-09 1
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 161 8.2e-09 1
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 160 8.9e-09 1
ASPGD|ASPL0000033989 - symbol:AN3035 species:162425 "Emer... 160 1.0e-08 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 159 1.2e-08 1
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 155 3.5e-08 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 155 4.2e-08 1
UNIPROTKB|G4MVT4 - symbol:MGG_01800 "Flap structure-speci... 152 1.1e-07 1
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 151 1.2e-07 1
SGD|S000002671 - symbol:DIN7 "Mitochondrial nuclease func... 145 2.1e-07 1
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 145 4.5e-07 1
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 145 5.8e-07 1
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 145 5.8e-07 1
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 145 5.9e-07 1
DICTYBASE|DDB_G0291570 - symbol:exo1 "5'3'-exonuclease N-... 144 9.9e-07 1
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 141 1.6e-06 1
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 139 2.3e-06 1
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 138 2.4e-06 1
ASPGD|ASPL0000035217 - symbol:AN3186 species:162425 "Emer... 128 4.6e-05 1
CGD|CAL0001028 - symbol:orf19.652 species:5476 "Candida a... 124 0.00010 1
TAIR|locus:2194085 - symbol:AT1G18090 species:3702 "Arabi... 122 0.00014 1
WB|WBGene00009731 - symbol:exo-1 species:6239 "Caenorhabd... 122 0.00016 1
UNIPROTKB|E9PLG0 - symbol:GEN1 "Flap endonuclease GEN hom... 92 0.00066 1
UNIPROTKB|E9PM30 - symbol:GEN1 "Flap endonuclease GEN hom... 91 0.00085 1
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 274 (101.5 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
Identities = 56/99 (56%), Positives = 71/99 (71%)
Query: 211 STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 270
S L ++ L ++ +Q R+A+T+T QM E+QELL+LFG+P+I AP EAEAQCA L+L
Sbjct: 757 SNLLTQQNTLKAQKQQQERVAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLT 816
Query: 271 NHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 309
+ T G ITDDSDIWLFGAR VYKNFF+K V Y D
Sbjct: 817 DQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVD 855
Score = 220 (82.5 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
Identities = 39/70 (55%), Positives = 51/70 (72%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G S+ NAHL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALKGVRDRHGNSIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRD 218
T++ +D
Sbjct: 87 TLAKRRHKKD 96
Score = 108 (43.1 bits), Expect = 6.6e-31, Sum P(2) = 6.6e-31
Identities = 40/141 (28%), Positives = 62/141 (43%)
Query: 1 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 58
A+R+ K AAS++ L K E ALP V RE D++ LPP
Sbjct: 89 AKRRHKKDLAASDSKTTTEKLLKTFLKRQVIKTALKSKREEALPSLTQVQREDDIYALPP 148
Query: 59 APAQTVQXXXXXXXXXXTEAKFR--------YADLHSVDINSEQFSALPPDMRHEILTEL 110
+ E + + + H+VDI SE F++LP +++HEILT++
Sbjct: 149 LQEKEKNSSEEEDEKEWQERMSQKQALQEEFFQNPHAVDIESEDFNSLPLEVKHEILTDM 208
Query: 111 LE--QRKLSSWHKMHEMPQND 129
E +R+ + + M E ND
Sbjct: 209 KEFTKRRRTLFEAMPE-ESND 228
Score = 39 (18.8 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 232 STITEQMSREAQELLQLFGVPFIVAPG---------EAEAQCASLELGNHTQGVITDDSD 282
S +E S E E GV APG ++ AQ AS G T +DD D
Sbjct: 1110 SQSSEASSGEDAEYFPAMGVQRAKAPGASRARSSAAQSAAQPASRRDGGTTTSSSSDDDD 1169
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 274 (101.5 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
Identities = 56/99 (56%), Positives = 71/99 (71%)
Query: 211 STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 270
S L ++ L ++ +Q R+A+T+T QM E+QELL+LFG+P+I AP EAEAQCA L+L
Sbjct: 1171 SNLLTQQNTLKAQKQQQERVAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLT 1230
Query: 271 NHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 309
+ T G ITDDSDIWLFGAR VYKNFF+K V Y D
Sbjct: 1231 DQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVD 1269
Score = 219 (82.2 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 150 ISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQT 209
+S++SIWL+Q KG D G S+ NAHL+ L+HR+CKLLFF+I+P+FVFDG P LKKQT
Sbjct: 452 MSNISIWLNQALKGVRDRHGNSIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQT 511
Query: 210 ISTLEKDRD 218
++ +D
Sbjct: 512 LAKRRHKKD 520
Score = 108 (43.1 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 40/141 (28%), Positives = 62/141 (43%)
Query: 1 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 58
A+R+ K AAS++ L K E ALP V RE D++ LPP
Sbjct: 513 AKRRHKKDLAASDSKTTTEKLLKTFLKRQVIKTALKSKREEALPSLTQVQREDDIYALPP 572
Query: 59 APAQTVQXXXXXXXXXXTEAKFR--------YADLHSVDINSEQFSALPPDMRHEILTEL 110
+ E + + + H+VDI SE F++LP +++HEILT++
Sbjct: 573 LQEKEKNSSEEEDEKEWQERMSQKQALQEEFFQNPHAVDIESEDFNSLPLEVKHEILTDM 632
Query: 111 LE--QRKLSSWHKMHEMPQND 129
E +R+ + + M E ND
Sbjct: 633 KEFTKRRRTLFEAMPE-ESND 652
Score = 39 (18.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 232 STITEQMSREAQELLQLFGVPFIVAPG---------EAEAQCASLELGNHTQGVITDDSD 282
S +E S E E GV APG ++ AQ AS G T +DD D
Sbjct: 1524 SQSSEASSGEDAEYFPAMGVQRAKAPGASRARSSAAQSAAQPASRRDGGTTTSSSSDDDD 1583
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 296 (109.3 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 58/108 (53%), Positives = 78/108 (72%)
Query: 208 QTIST-LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCAS 266
Q ++T L ++R +L +ER +Q R+ +I+++MS + QELL+LFG+P+IVAP EAEAQCA
Sbjct: 849 QELATNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAF 908
Query: 267 LELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYF 314
L + T G ITDDSDIWLFG RTVYKNFF + HV+ + A I F
Sbjct: 909 LNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNKHVMEFRAEQIEQTF 956
Score = 239 (89.2 bits), Expect = 9.7e-19, P = 9.7e-19
Identities = 41/91 (45%), Positives = 68/91 (74%)
Query: 151 SDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTI 210
+D+SIWLHQ+ KG D G ++ NAHL+GL+HR+CKLL+++++PVF+FDG VPQLK+ TI
Sbjct: 50 ADISIWLHQVVKGFQDNKGSALSNAHLLGLFHRLCKLLYYRVRPVFIFDGCVPQLKRDTI 109
Query: 211 STLEKDRDQLLLERGKQTRLASTITEQMSRE 241
+ ++ R++L E R+ + + + +++E
Sbjct: 110 ARRQQQRNKLSNEAD---RIQALLLQSLAKE 137
Score = 167 (63.8 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 46/148 (31%), Positives = 73/148 (49%)
Query: 33 DVLGKNEMALPPPSVSR-EVDMFELPPAPAQTVQ---------XXXXXXXXXXTEAKFRY 82
++L K+ + PPP+ E D+F+LP PA +VQ E+ R+
Sbjct: 149 ELLLKSPVKRPPPAKKNDEDDLFKLPELPAASVQDNQDESEQDTSASASDSSFDESTARH 208
Query: 83 A---DLHSVDINSEQFSALPPDMRHEILTELLEQRKLSSWHKMHEMPQNDQHSMLEFRCN 139
+ L ++D+ S+ F LP D+RHEILT++ E RK SSW ++HE+P +F C+
Sbjct: 209 SYNSSLQAIDVKSQHFRNLPADVRHEILTDIKETRKQSSWGRLHELPARSD----DF-CS 263
Query: 140 IVINKLLVDLISDVSIWLHQLTKGTHDL 167
+ +LL S+ + G H L
Sbjct: 264 FQMKRLLKRRAVQESLEQAEQEMGGHTL 291
Score = 80 (33.2 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 1 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVLGKN-EMAL------PPPSVSR-EVD 52
A+R+ ++K ++ AD++++ LGKN E+ L PPP+ E D
Sbjct: 110 ARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAELLLKSPVKRPPPAKKNDEDD 169
Query: 53 MFELPPAPAQTVQ 65
+F+LP PA +VQ
Sbjct: 170 LFKLPELPAASVQ 182
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 221 (82.9 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 45/93 (48%), Positives = 60/93 (64%)
Query: 218 DQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVI 277
D+L ++ K R + +T M +E QELL FG+P+I AP EAEAQCA L N G+I
Sbjct: 751 DELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGII 810
Query: 278 TDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310
TDDSD++LFG +YKN F +K++V Y A I
Sbjct: 811 TDDSDVFLFGGTKIYKNMFHEKNYVEFYDAESI 843
Score = 206 (77.6 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 40/77 (51%), Positives = 51/77 (66%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS 211
D SIW++Q K D G +V N+H+ G + RICKLL+F I+PVFVFDGGVP LK++TI
Sbjct: 30 DASIWIYQFLKAVRDQEGNAVKNSHITGFFRRICKLLYFGIRPVFVFDGGVPVLKRETIR 89
Query: 212 TLEKDRDQLLLERGKQT 228
K+R Q E K T
Sbjct: 90 Q-RKERRQGKRESAKST 105
Score = 37 (18.1 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 90 INSEQFSALPPDMRHEILTELLEQRKLSSWHKMHEMP 126
++ E F +P + E + RK+ S +K H P
Sbjct: 665 LSEELFEDVPTKSQISKEAEDNDSRKVESINKEHRKP 701
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 216 (81.1 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 46/102 (45%), Positives = 66/102 (64%)
Query: 214 EKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASL-ELGNH 272
EK +L ++ + R A +T+ M +E QELL+LFG+P+IVAP EAEAQC+ L EL
Sbjct: 732 EKRLKELKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLEL-KL 790
Query: 273 TQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIRYYF 314
G++TDDSD++LFG VY+N F++ V Y D++ F
Sbjct: 791 VDGIVTDDSDVFLFGGTRVYRNMFNQNKFVELYLMDDMKREF 832
Score = 200 (75.5 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 38/77 (49%), Positives = 50/77 (64%)
Query: 141 VINKLLVDLISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDG 200
++NK L D SIW++Q K D G + ++H++G + RICKLLFF IKPVFVFDG
Sbjct: 22 LVNKRLA---IDASIWIYQFLKAVRDKEGNQLKSSHVVGFFRRICKLLFFGIKPVFVFDG 78
Query: 201 GVPQLKKQTISTLEKDR 217
G P LK+QTI + R
Sbjct: 79 GAPSLKRQTIQKRQARR 95
Score = 49 (22.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 84 DLHSVDINSEQFSALPPDMRHEILT 108
D ++D +SE F +LP ++ IL+
Sbjct: 212 DFSNIDFDSELFQSLPDTDKYSILS 236
Score = 44 (20.5 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 42 LPPPSVSREVDMFELPPAPAQTVQXXXXXXXXXXTEAKFRYADLHSVDINSEQFSALPPD 101
+P PS S ++ EL A + ++ EA + D + + ++Q +L +
Sbjct: 354 VPLPSRSHSMNPRELVAAKLKEIKENSFSENQQSDEADYNVTDDLILQLATQQ--SLEEN 411
Query: 102 MRHEILTELL--EQRKLSSWHKMHEMPQNDQHSMLEFRCNIVIN---KLLVDLISDVS 154
+ + L L E KL+S K E+ D + E N ++N L ++ + DVS
Sbjct: 412 KKSKELFSLSASEFDKLNSEKKTFEILSTDIPA--EDSMNSLLNDEENLKLEHVGDVS 467
Score = 37 (18.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 135 EFRCNIVINKLLVDLISDVSIWLHQLTKGTHDLAGGSVPN 174
E + NKLL + ++ L + K LA SV N
Sbjct: 99 EENATVTANKLLALQMRHQAMLLEENNKKATALANASVQN 138
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 278 (102.9 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 61/118 (51%), Positives = 79/118 (66%)
Query: 200 GGVPQ----LKKQTISTLEKD----RDQLLLERGKQTRLASTITEQMSREAQELLQLFGV 251
GG P + + +++LE D + L ++ +Q R+A+T+T QM E+QELL+LFGV
Sbjct: 1110 GGSPNEWQDIDLEELASLESDLLAQQHSLKAQKQQQERVAATVTGQMFLESQELLRLFGV 1169
Query: 252 PFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 309
P+I AP EAEAQCA L+L + T G ITDDSDIWLFGAR VYKNFF+K V Y D
Sbjct: 1170 PYIEAPMEAEAQCAILDLSDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVD 1227
Score = 114 (45.2 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 42/141 (29%), Positives = 61/141 (43%)
Query: 1 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 58
A+R+ K A ++ K L K E ALP V RE D++ LPP
Sbjct: 519 AKRRQRKDLATDDSKKTTEKLLKTFLKRQVVKTALKSKREEALPSLTQVQRENDIYALPP 578
Query: 59 APAQTVQXXXXXXXXXXTEAKFRYADL-----HS---VDINSEQFSALPPDMRHEILTEL 110
+ E + L H+ VDI SE FS+LPP+++HEILT++
Sbjct: 579 LEEKEKNSSEEEDEKEWQERMIQKQALQEEFFHNPQAVDIESEDFSSLPPEIKHEILTDM 638
Query: 111 LE--QRKLSSWHKMHEMPQND 129
E +R+ + + M E ND
Sbjct: 639 KEFTKRRRTLFEPMPE-ESND 658
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 277 (102.6 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 56/98 (57%), Positives = 73/98 (74%)
Query: 215 KDRDQLLLERGKQT-RLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 273
+D Q L E+ +Q R +ST+T QM +E+QELL+LFGVPFIVAP EAEAQCA+L+ + T
Sbjct: 634 QDEQQTLREQHQQQQRSSSTVTGQMCQESQELLRLFGVPFIVAPMEAEAQCAALDRLDQT 693
Query: 274 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIR 311
G ITDDSDIWLFG R VY+NFF++ +V Y D++
Sbjct: 694 HGTITDDSDIWLFGGRHVYRNFFNQNKYVEHYQIVDMQ 731
Score = 224 (83.9 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 45/96 (46%), Positives = 64/96 (66%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G +V NAHL+ L+HR+CKLLFF+I+PVFV+DG P LKKQ
Sbjct: 27 LAVDISIWLNQAVKGVRDRDGNAVQNAHLLTLFHRLCKLLFFRIRPVFVYDGDAPLLKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQT--RLASTITEQMSREA 242
T++ + R++ E +QT +L T ++ + A
Sbjct: 87 TLAVRRQRREETNRE-SRQTSEKLLQTFLKRQAIRA 121
Score = 108 (43.1 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 36/105 (34%), Positives = 51/105 (48%)
Query: 35 LGKNEMALPPP--SVSREV--DMFELPPAPAQTV-QXXXXXXXXXXTEAKFRYADLH--- 86
LG+N P SV R+ D++ LP P + Q EA Y+
Sbjct: 123 LGENSQESAPSLSSVRRDEHDDIYVLPALPPEDDRQESSSEEEKDGDEALHNYSRFQEEL 182
Query: 87 -----SVDINSEQFSALPPDMRHEILTELLE--QRKLSSWHKMHE 124
+VDINSEQFS +PP+++HEIL E+ E +R+ + HK E
Sbjct: 183 CDNPDAVDINSEQFSLMPPEIKHEILKEMKEFSKRRRTLLHKPPE 227
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 276 (102.2 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 56/99 (56%), Positives = 72/99 (72%)
Query: 211 STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 270
S L +++ L ++ +Q R+A+++T QM E+QELL+LFGVP+I AP EAEAQCA L+L
Sbjct: 740 SNLLAEQNSLKAQKQQQDRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLT 799
Query: 271 NHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 309
+ T G ITDDSDIWLFGAR VYKNFF+K V Y D
Sbjct: 800 DQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVD 838
Score = 225 (84.3 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 42/92 (45%), Positives = 61/92 (66%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G + NAHL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALKGVRDSHGNVIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQT-RLASTITEQMS 239
T++ + +D ++ K T +L T ++ +
Sbjct: 87 TLAKRRQRKDSASIDSRKTTEKLLKTFLKRQA 118
Score = 106 (42.4 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 36/142 (25%), Positives = 62/142 (43%)
Query: 1 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVLGKNEMALPPP--SVSREVDMFELPP 58
A+R+ K A+ ++ K + PP V R+ D++ LPP
Sbjct: 89 AKRRQRKDSASIDSRKTTEKLLKTFLKRQALKTAFRSSRHEAPPSLTQVQRQDDIYVLPP 148
Query: 59 APAQTV---------QXXXXXXXXXXTEAKFRYADLHSVDINSEQFSALPPDMRHEILTE 109
P + Q + +F + + ++DI SE FS+LPP+++HEILT+
Sbjct: 149 LPEEEKHSSEEEDEKQWQARMDQKQALQEEF-FHNPQAIDIESEDFSSLPPEVKHEILTD 207
Query: 110 LLE--QRKLSSWHKMHEMPQND 129
+ E +R+ + + M E ND
Sbjct: 208 MKEFTKRRRTLFEAMPE-ESND 228
Score = 40 (19.1 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 103 RHEILTELLEQRKLSSWHKMHEMPQNDQHSMLE 135
RHE L + ++ + + +P+ ++HS E
Sbjct: 127 RHEAPPSLTQVQRQDDIYVLPPLPEEEKHSSEE 159
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 274 (101.5 bits), Expect = 6.4e-31, Sum P(2) = 6.4e-31
Identities = 58/106 (54%), Positives = 73/106 (68%)
Query: 208 QTISTLEKD----RDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQ 263
+ + TLE D + L ++ +Q R A+T+T QM E+QELL+LFG+P+I AP EAEAQ
Sbjct: 735 EELETLENDLLAQQHSLKAQQQQQERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQ 794
Query: 264 CASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 309
CA L+L + T G ITDDSDIWLFGAR VYKNFF+K V Y D
Sbjct: 795 CAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVD 840
Score = 222 (83.2 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 42/92 (45%), Positives = 60/92 (65%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q +G D G S+ NAHL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALRGVRDCHGNSIGNAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQT-RLASTITEQMS 239
T++ +D + K T +L T ++ +
Sbjct: 87 TLAKRRHRKDLAATDSRKTTEKLLKTFLKRQA 118
Score = 108 (43.1 bits), Expect = 6.4e-31, Sum P(2) = 6.4e-31
Identities = 40/141 (28%), Positives = 62/141 (43%)
Query: 1 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 58
A+R+ K AA+++ K L K + ALP V RE D++ LPP
Sbjct: 89 AKRRHRKDLAATDSRKTTEKLLKTFLKRQAIKTALKSKRDEALPSLTQVRREDDIYVLPP 148
Query: 59 APAQTVQXXXXXXXXXXTEAKFRYADL--------HSVDINSEQFSALPPDMRHEILTEL 110
+ E + L H++DI SE FS+LP +++HEILT++
Sbjct: 149 LQKEEKNSSEEEDEREWQERMSQKQALQEEFFHNPHAIDIESEDFSSLPLEIKHEILTDM 208
Query: 111 LE--QRKLSSWHKMHEMPQND 129
E +R+ + + M E ND
Sbjct: 209 KEFTKRRRTLFEAMPE-ESND 228
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 273 (101.2 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 55/99 (55%), Positives = 71/99 (71%)
Query: 211 STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELG 270
S L ++ L ++ +Q R+A+T+T QM E+QELL+LFG+P+I AP EAEAQCA L+L
Sbjct: 741 SNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLT 800
Query: 271 NHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 309
+ T G ITDDSDIWLFGAR VY+NFF+K V Y D
Sbjct: 801 DQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVD 839
Score = 217 (81.4 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 42/92 (45%), Positives = 59/92 (64%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G S+ N HL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALKGVRDRHGNSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQT-RLASTITEQMS 239
T+ + +D + K T +L T ++ +
Sbjct: 87 TLVKRRQRKDLASSDSRKTTEKLLKTFLKRQA 118
Score = 106 (42.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 34/112 (30%), Positives = 55/112 (49%)
Query: 37 KNEMALPP-PSVSREVDMFELPPAPAQTVQXXXXXXXXXXTEAKFRYADL-----HS--- 87
K + ALP V RE D++ LPP + E + L H+
Sbjct: 126 KRDEALPSLTQVRRENDLYVLPPLQEEEKHSSEEEDEKEWQERMNQKQALQEEFFHNPQA 185
Query: 88 VDINSEQFSALPPDMRHEILTELLE--QRKLSSWHKMHEMPQNDQHSMLEFR 137
+DI SE FS+LPP+++HEILT++ E +R+ + + M E ++D S + +
Sbjct: 186 IDIESEDFSSLPPEVKHEILTDMKEFTKRRRTLFEAMPE--ESDDFSQYQLK 235
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 274 (101.5 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 58/106 (54%), Positives = 73/106 (68%)
Query: 208 QTISTLEKD----RDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQ 263
+ + TLE D + L ++ +Q R A+T+T QM E+QELL+LFG+P+I AP EAEAQ
Sbjct: 1150 EELETLENDLLAQQHSLKAQQQQQERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQ 1209
Query: 264 CASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 309
CA L+L + T G ITDDSDIWLFGAR VYKNFF+K V Y D
Sbjct: 1210 CAILDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVD 1255
Score = 221 (82.9 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 41/91 (45%), Positives = 61/91 (67%)
Query: 150 ISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQT 209
+S++SIWL+Q +G D G S+ NAHL+ L+HR+CKLLFF+I+P+FVFDG P LKKQT
Sbjct: 453 MSNISIWLNQALRGVRDCHGNSIGNAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQT 512
Query: 210 ISTLEKDRDQLLLERGKQT-RLASTITEQMS 239
++ +D + K T +L T ++ +
Sbjct: 513 LAKRRHRKDLAATDSRKTTEKLLKTFLKRQA 543
Score = 108 (43.1 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 40/141 (28%), Positives = 62/141 (43%)
Query: 1 AQRKTLKSKAASNADKVRSDXXXXXXXXXXXXDVL-GKNEMALPP-PSVSREVDMFELPP 58
A+R+ K AA+++ K L K + ALP V RE D++ LPP
Sbjct: 514 AKRRHRKDLAATDSRKTTEKLLKTFLKRQAIKTALKSKRDEALPSLTQVRREDDIYVLPP 573
Query: 59 APAQTVQXXXXXXXXXXTEAKFRYADL--------HSVDINSEQFSALPPDMRHEILTEL 110
+ E + L H++DI SE FS+LP +++HEILT++
Sbjct: 574 LQKEEKNSSEEEDEREWQERMSQKQALQEEFFHNPHAIDIESEDFSSLPLEIKHEILTDM 633
Query: 111 LE--QRKLSSWHKMHEMPQND 129
E +R+ + + M E ND
Sbjct: 634 KEFTKRRRTLFEAMPE-ESND 653
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 270 (100.1 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 52/99 (52%), Positives = 72/99 (72%)
Query: 213 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNH 272
L +++ L ++ +Q R+A+++T QM E+QELL+LFG+P+I AP EAEAQCA L+L +
Sbjct: 760 LSAEQEMLQSQKQQQERVATSVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQ 819
Query: 273 TQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIR 311
T G ITDDSD+WLFGAR VYKNFF + +V Y D +
Sbjct: 820 TSGTITDDSDVWLFGARHVYKNFFSRNKYVEYYQYIDFQ 858
Score = 212 (79.7 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 42/96 (43%), Positives = 65/96 (67%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G ++ NAHL+ L++R+CKLLFF+I+PVFVFDG P LK+Q
Sbjct: 27 LAVDISIWLNQAVKGVRDRHGNTIQNAHLLTLFNRLCKLLFFRIRPVFVFDGEAPLLKRQ 86
Query: 209 TISTLEKDRDQLLLERGKQT--RLASTITEQMSREA 242
T++ + R +L + ++T +L T ++ + +A
Sbjct: 87 TLAK-RRHRKELAVIDSRKTAEKLLKTFLKRQAIKA 121
Score = 103 (41.3 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 86 HSVDINSEQFSALPPDMRHEILTELLEQRKLSSWHKMHEMPQNDQHSMLEFRCNIVINKL 145
H++DI+SE F+ LPP+++HEILT++ E K + MP+ D + +++ ++ K
Sbjct: 186 HAIDIDSEDFNKLPPEVKHEILTDMKELTKRNRT-LFEAMPE-DSNDFSQYQLRGLLKKS 243
Query: 146 -LVDLISDVSIWLHQLTKG 163
L I +V L+Q G
Sbjct: 244 HLRQCIENVEKELNQQHSG 262
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 270 (100.1 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 52/99 (52%), Positives = 72/99 (72%)
Query: 213 LEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNH 272
L +++ L ++ +Q R+A+++T QM E+QELL+LFG+P+I AP EAEAQCA L+L +
Sbjct: 691 LSAEQEMLQSQKQQQERVATSVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQ 750
Query: 273 TQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDIR 311
T G ITDDSD+WLFGAR VYKNFF + +V Y D +
Sbjct: 751 TSGTITDDSDVWLFGARHVYKNFFSRNKYVEYYQYIDFQ 789
Score = 212 (79.7 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 42/96 (43%), Positives = 65/96 (67%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G ++ NAHL+ L++R+CKLLFF+I+PVFVFDG P LK+Q
Sbjct: 27 LAVDISIWLNQAVKGVRDRHGNTIQNAHLLTLFNRLCKLLFFRIRPVFVFDGEAPLLKRQ 86
Query: 209 TISTLEKDRDQLLLERGKQT--RLASTITEQMSREA 242
T++ + R +L + ++T +L T ++ + +A
Sbjct: 87 TLAK-RRHRKELAVIDSRKTAEKLLKTFLKRQAIKA 121
Score = 103 (41.3 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 86 HSVDINSEQFSALPPDMRHEILTELLEQRKLSSWHKMHEMPQNDQHSMLEFRCNIVINKL 145
H++DI+SE F+ LPP+++HEILT++ E K + MP+ D + +++ ++ K
Sbjct: 186 HAIDIDSEDFNKLPPEVKHEILTDMKELTKRNRT-LFEAMPE-DSNDFSQYQLRGLLKKS 243
Query: 146 -LVDLISDVSIWLHQLTKG 163
L I +V L+Q G
Sbjct: 244 HLRQCIENVEKELNQQHSG 262
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 256 (95.2 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 50/104 (48%), Positives = 72/104 (69%)
Query: 207 KQTISTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCAS 266
++ I L+++ L E+ K R A +++ +M E QELLQ+FG+P+I+AP EAEAQCA
Sbjct: 894 EEEIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAF 953
Query: 267 LELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310
+E N G++TDDSD++LFGAR+VYKN FD + +V Y DI
Sbjct: 954 MEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDI 997
Score = 191 (72.3 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 38/100 (38%), Positives = 59/100 (59%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D SIW+ Q K D G V NAHLIG + RICKLLF + KP+FVFDG P LK++
Sbjct: 27 LAIDASIWMVQFIKAMRDEKGDMVQNAHLIGFFRRICKLLFLRTKPIFVFDGATPALKRR 86
Query: 209 TISTLEKDRD--QLLLERGKQTRLASTITE-QMSREAQEL 245
T+ + R+ Q + + + L + + + ++ +A+++
Sbjct: 87 TVIARRRQRENAQTKIRKTAEKLLLNRLKDIRLKEQAKDI 126
Score = 44 (20.5 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 89 DINSEQFSALPPDMRHEILTELLEQ---RKLSSWHKMHEMPQNDQHSMLE 135
+I+ ++LPP M+ ++L ++ E+ + K+ + P+ +E
Sbjct: 278 NIDPAVLASLPPSMQLDLLAQMREKLMAENRQKYQKVKKAPEKFSELQIE 327
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 187 (70.9 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 235 TEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 294
T ++ R+ QE L G+P+I +PGEAEAQC LE GV++DDSD+W FGA+ VY++
Sbjct: 465 TPELYRDLQEFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRH 524
Query: 295 FFDKKSHVLRY 305
F K V RY
Sbjct: 525 MFSKNRRVQRY 535
Score = 131 (51.2 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 37/83 (44%), Positives = 49/83 (59%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGS-VPNAHLIGLYHRICKLLFFKIKPVFVFDGG-VPQLK 206
L DVSIW++Q LA S P HL L +R+ KLLF+KI+PVFVFDG VP LK
Sbjct: 27 LAIDVSIWIYQA-----QLAYPSDQPFPHLRLLVNRLSKLLFYKIRPVFVFDGPQVPPLK 81
Query: 207 KQTISTLEKDR--DQLLLERGKQ 227
+Q + + R D +L+ K+
Sbjct: 82 RQVLEARRQKRQNDDDILKNSKK 104
Score = 40 (19.1 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 84 DLHSVDINSEQFS--ALPPDMRHEILTELLEQR 114
D +V+ ++ S P D+R EI+ + LE+R
Sbjct: 307 DFFNVEYGGKKLSREVTPDDVREEIV-DRLEER 338
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 187 (70.9 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 210 ISTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 269
I K+ ++L+ E K + I ++M+ + + LL FG+P+I +P EAEAQC+ L
Sbjct: 1183 IKETNKENEELIKEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNN 1242
Query: 270 GNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 305
N+ +I+DDSD+ +F +TV KNFF+KK V Y
Sbjct: 1243 KNYCDAIISDDSDVLVFSGKTVIKNFFNKKKTVEVY 1278
Score = 127 (49.8 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 155 IWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTI 210
+W+ + ++ ++ AHL + RICKLL++ I+P+F+FDG P+LK++TI
Sbjct: 61 LWIDFSENISSEIKTDNIKKAHLYFFFLRICKLLYYNIRPIFIFDGNPPELKRKTI 116
Score = 49 (22.3 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 89 DINSEQFSALPPDMRHEILTELLEQ 113
+IN E F LP ++++IL ++ E+
Sbjct: 594 EINKEIFEKLPLKLQYQILQDIKEE 618
Score = 49 (22.3 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 152 DVSIWLHQLTKGTH--DLAGGSVPN 174
DVSIWL++LT + DL S N
Sbjct: 30 DVSIWLYELTYANNVKDLRNKSFDN 54
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 187 (70.9 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 210 ISTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLEL 269
I K+ ++L+ E K + I ++M+ + + LL FG+P+I +P EAEAQC+ L
Sbjct: 1183 IKETNKENEELIKEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNN 1242
Query: 270 GNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRY 305
N+ +I+DDSD+ +F +TV KNFF+KK V Y
Sbjct: 1243 KNYCDAIISDDSDVLVFSGKTVIKNFFNKKKTVEVY 1278
Score = 127 (49.8 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 155 IWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTI 210
+W+ + ++ ++ AHL + RICKLL++ I+P+F+FDG P+LK++TI
Sbjct: 61 LWIDFSENISSEIKTDNIKKAHLYFFFLRICKLLYYNIRPIFIFDGNPPELKRKTI 116
Score = 49 (22.3 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 89 DINSEQFSALPPDMRHEILTELLEQ 113
+IN E F LP ++++IL ++ E+
Sbjct: 594 EINKEIFEKLPLKLQYQILQDIKEE 618
Score = 49 (22.3 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 152 DVSIWLHQLTKGTH--DLAGGSVPN 174
DVSIWL++LT + DL S N
Sbjct: 30 DVSIWLYELTYANNVKDLRNKSFDN 54
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 239 (89.2 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 67/191 (35%), Positives = 98/191 (51%)
Query: 125 MPQNDQHSMLE-FRCNIVINKLLVDLIS-DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYH 182
M ND +LE + +I + L I+ D+S+W+ + T GSV HL L+
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQ--TVKKMMGSVMKPHLRNLFF 58
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLASTITEQMSREA 242
RI L +K VFV +G P+LK IS + R + Q + + + + RE
Sbjct: 59 RISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQ-KTGRSHFKSVLREC 117
Query: 243 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--DKKS 300
+L+ G+P++ A GEAEA CA L G H G +T+D D +L+GA+TVY+NF K
Sbjct: 118 LHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMNTKDP 177
Query: 301 HVLRYTAPDIR 311
HV YT I+
Sbjct: 178 HVDCYTMSSIK 188
Score = 37 (18.1 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 297 DKKSHVLRYTAPDI 310
DK V+RY PD+
Sbjct: 340 DKLVKVIRYQRPDL 353
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 236 (88.1 bits), Expect = 8.3e-20, Sum P(2) = 8.3e-20
Identities = 67/194 (34%), Positives = 102/194 (52%)
Query: 125 MPQNDQHSMLE-FRCNIVINKLLVDLIS-DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYH 182
M ND +LE + +I ++ L I+ D+S+W+ + T G+V HL L+
Sbjct: 1 MGVNDLWQILEPVKQHIHLHHLCGKTIAVDLSLWVCEAQ--TVKKMIGTVMKPHLRNLFF 58
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLL-ERGK--QTRLASTITEQMS 239
RI L +K VFV +G P+LK IS R+Q+ GK + + + +
Sbjct: 59 RISYLTLMDVKLVFVMEGEPPKLKADVISR----RNQIRYGPSGKTWSQKAGRSHFKSVL 114
Query: 240 REAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--D 297
+E ++L+ G+P++ A GEAEA CA L H G +T+D D +L+GA+TVY+NF
Sbjct: 115 KECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNT 174
Query: 298 KKSHVLRYTAPDIR 311
K HV YTA I+
Sbjct: 175 KDPHVDCYTASSIK 188
Score = 37 (18.1 bits), Expect = 8.3e-20, Sum P(2) = 8.3e-20
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 297 DKKSHVLRYTAPDI 310
DK V+RY PD+
Sbjct: 339 DKLVKVIRYQRPDL 352
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 225 (84.3 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 44/98 (44%), Positives = 62/98 (63%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D SIW++Q K D G S+P++H+IG + RICKLL+F I P+FVFDGGVP LKKQ
Sbjct: 27 LAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQTRLASTITEQMSREAQELL 246
TI+ ++ R++ +Q + Q+ REA+ L
Sbjct: 87 TINNRKQRREKN--SESRQETAQKLLAIQLQREAENAL 122
Score = 216 (81.1 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 45/94 (47%), Positives = 60/94 (63%)
Query: 218 DQLLLER-GKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGV 276
+QLL E+ K R + +TE M + QELL+ FG+P+I AP EAEAQCA L G+
Sbjct: 708 EQLLQEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGI 767
Query: 277 ITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310
+TDDSD +LFG +YKN FD+K +V Y D+
Sbjct: 768 VTDDSDCFLFGGDKIYKNMFDQKQYVEFYLQDDL 801
Score = 55 (24.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 37 KNEMALPPPSVSREVDMFELPPAPAQTVQXXXXXXX--XXXTE--AKFRYAD---LHSVD 89
+ E + P V R+ D + LP V TE F + D ++ +D
Sbjct: 152 ERESSTPSSIVYRKNDEYHLPDLKEFKVSKFDERIMPEEDLTEFYEDFDHVDGININEID 211
Query: 90 INSEQFSALPPDMRHEILTELLEQRKLSSWHKMHEMPQNDQHSM 133
S++F ALP ++ IL+ L + +L ++ ++ + +SM
Sbjct: 212 PKSKEFEALPIATQYMILSHLRLKSRLRMGYRKEQLEELFPNSM 255
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 225 (84.3 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 44/98 (44%), Positives = 62/98 (63%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D SIW++Q K D G S+P++H+IG + RICKLL+F I P+FVFDGGVP LKKQ
Sbjct: 27 LAIDASIWIYQFLKAMRDKDGNSLPSSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQTRLASTITEQMSREAQELL 246
TI+ ++ R++ +Q + Q+ REA+ L
Sbjct: 87 TINNRKQRREKN--SESRQETAQKLLAIQLQREAENAL 122
Score = 216 (81.1 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 45/94 (47%), Positives = 60/94 (63%)
Query: 218 DQLLLER-GKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGV 276
+QLL E+ K R + +TE M + QELL+ FG+P+I AP EAEAQCA L G+
Sbjct: 708 EQLLQEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGI 767
Query: 277 ITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310
+TDDSD +LFG +YKN FD+K +V Y D+
Sbjct: 768 VTDDSDCFLFGGDKIYKNMFDQKQYVEFYLQDDL 801
Score = 55 (24.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 37 KNEMALPPPSVSREVDMFELPPAPAQTVQXXXXXXX--XXXTE--AKFRYAD---LHSVD 89
+ E + P V R+ D + LP V TE F + D ++ +D
Sbjct: 152 ERESSTPSSIVYRKNDEYHLPDLKEFKVSKFDERIMPEEDLTEFYEDFDHVDGININEID 211
Query: 90 INSEQFSALPPDMRHEILTELLEQRKLSSWHKMHEMPQNDQHSM 133
S++F ALP ++ IL+ L + +L ++ ++ + +SM
Sbjct: 212 PKSKEFEALPIATQYMILSHLRLKSRLRMGYRKEQLEELFPNSM 255
>UNIPROTKB|I3LHP7 [details] [associations]
symbol:I3LHP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:CU469267
Ensembl:ENSSSCT00000025898 Uniprot:I3LHP7
Length = 159
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 50/112 (44%), Positives = 71/112 (63%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G S+ NAHL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALKGVRDRHGNSIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQT--RLAST-ITEQMSREAQELLQLFG--VPFIV 255
T++ + R L + K+T +L T + Q+ + A + + G +PF V
Sbjct: 87 TLAK-RRQRKDLATDDSKKTTEKLLKTFLKRQVVKTALKSKRQEGNYIPFKV 137
>RGD|1586176 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent repair
deficiency, complementation group 5" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008340 "determination of
adult lifespan" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0009650 "UV protection" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 RGD:1586176
GO:GO:0005634 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
GO:GO:0006289 PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
IPI:IPI00357888 Ensembl:ENSRNOT00000014836 UCSC:RGD:1586176
ArrayExpress:D4A7R1 Uniprot:D4A7R1
Length = 242
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 42/92 (45%), Positives = 62/92 (67%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G ++ NAHL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALKGVRDRHGNAIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQT-RLASTITEQMS 239
T++ + +D ++ K T +L T ++ +
Sbjct: 87 TLAKRRQKKDSASIDSRKTTEKLLKTFLKRQA 118
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 65/191 (34%), Positives = 97/191 (50%)
Query: 125 MPQNDQHSMLE-FRCNIVINKLLVDLIS-DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYH 182
M ND +LE + +I + L I+ D+S+W+ + T G+V HL L+
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQ--TVKKMIGTVKKPHLRNLFF 58
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLASTITEQMSREA 242
RI L +K VFV +G P LK IS + R + + + + + + RE
Sbjct: 59 RISYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPS-GKSRSQKTGRSHFKSVLREC 117
Query: 243 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--DKKS 300
E+L+ G+P++ A GEAEA CA L H G +T+D D +L+GA+TVY+NF K
Sbjct: 118 LEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDP 177
Query: 301 HVLRYTAPDIR 311
HV YT I+
Sbjct: 178 HVDCYTISSIK 188
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 219 (82.2 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 46/97 (47%), Positives = 62/97 (63%)
Query: 214 EKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHT 273
E++ QL ++ K R A +T+ M E Q+LL+LFG+P+I AP EAEAQCA L
Sbjct: 784 EQELKQLRSQQKKDRRDADEVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLV 843
Query: 274 QGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310
G+ITDDSDI+LFG VYKN F++ +V Y D+
Sbjct: 844 DGIITDDSDIFLFGGTRVYKNMFNQSKYVECYLTADL 880
Score = 214 (80.4 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 43/96 (44%), Positives = 61/96 (63%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D SIW++Q K D G ++ N+H++G + RICKLL+F IKPVFVFDGG P LK+Q
Sbjct: 27 LAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQ 86
Query: 209 TISTLEKDRDQLLLERGKQTRLASTITEQMSREAQE 244
TI+ +K R+ E QT + + Q+ R A++
Sbjct: 87 TIANRKKRREGRR-EDAVQTA-SKLLAVQLQRTAEQ 120
Score = 41 (19.5 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 84 DLHSVDINSEQFSALPPDMRHEIL 107
D +D +S F +LP R+ IL
Sbjct: 208 DFSKIDFDSPFFLSLPATDRYNIL 231
>UNIPROTKB|Q9HD60 [details] [associations]
symbol:ERCC5 "DNA repair protein-complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR019974
Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 EMBL:AL157769 PANTHER:PTHR11081
EMBL:AF255431 EMBL:AF255433 EMBL:AF255434 EMBL:AF255435
EMBL:AF255436 UniGene:Hs.258429 HGNC:HGNC:3437
PANTHER:PTHR11081:SF1 IPI:IPI01010865 SMR:Q9HD60 STRING:Q9HD60
Ensembl:ENST00000535557 HOVERGEN:HBG054810 Uniprot:Q9HD60
Length = 232
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 42/92 (45%), Positives = 59/92 (64%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D+SIWL+Q KG D G S+ N HL+ L+HR+CKLLFF+I+P+FVFDG P LKKQ
Sbjct: 27 LAVDISIWLNQALKGVRDRHGNSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQ 86
Query: 209 TISTLEKDRDQLLLERGKQT-RLASTITEQMS 239
T+ + +D + K T +L T ++ +
Sbjct: 87 TLVKRRQRKDLASSDSRKTTEKLLKTFLKRQA 118
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 228 (85.3 bits), Expect = 9.1e-18, P = 9.1e-18
Identities = 63/191 (32%), Positives = 98/191 (51%)
Query: 125 MPQNDQHSMLE-FRCNIVINKLLVDLIS-DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYH 182
M ND +LE + +I + L I+ D+S+W+ + T G+V HL L+
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQ--TVKKMIGTVMKPHLRNLFF 58
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLASTITEQMSREA 242
RI L +K VFV +G P+LK ++ + R + + + + + + RE
Sbjct: 59 RISYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPS-GKSRSQKTGRSHFKSVLREC 117
Query: 243 QELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--DKKS 300
E+L+ G+P++ A GEAEA CA L H G +T+D D +L+GA+TVY+NF K
Sbjct: 118 LEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDP 177
Query: 301 HVLRYTAPDIR 311
HV YT I+
Sbjct: 178 HVDCYTVSSIK 188
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/126 (38%), Positives = 69/126 (54%)
Query: 170 GSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTR 229
G V HL L+ R IK VFV +G P+LK T+S + R + G R
Sbjct: 3 GVVTKPHLRNLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGASNKHGV-AR 61
Query: 230 LASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 289
+ + + +E +LL+ GVP++ A GEAEA CA L H G IT+D D++L+GA+
Sbjct: 62 TGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQ 121
Query: 290 TVYKNF 295
TVY+NF
Sbjct: 122 TVYRNF 127
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 222 (83.2 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 64/194 (32%), Positives = 100/194 (51%)
Query: 125 MPQNDQHSMLE-FRCNIVINKLLVDLIS-DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYH 182
M ND +LE + ++ ++ L I+ D+S+W+ + T G+V HL L+
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQ--TVKKMIGTVMKPHLRNLFF 58
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLL-ERGK--QTRLASTITEQMS 239
RI L +K VFV +G P LK IS R+Q+ GK + + + +
Sbjct: 59 RISYLTLMDVKLVFVMEGEPPHLKADVISK----RNQVRYGPSGKTWSQKTGRSHFKSVL 114
Query: 240 REAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--D 297
+E ++L+ G+P++ A GEAEA CA L + G +T+D D +L+GA+TVY+NF
Sbjct: 115 KECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMNT 174
Query: 298 KKSHVLRYTAPDIR 311
K HV YT I+
Sbjct: 175 KDPHVDCYTMSSIK 188
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 221 (82.9 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 64/194 (32%), Positives = 100/194 (51%)
Query: 125 MPQNDQHSMLE-FRCNIVINKLLVDLIS-DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYH 182
M ND +LE + +I +N L I+ D+S+W+ + T G+V HL L+
Sbjct: 1 MGVNDLWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCEAQ--TVKKMIGTVMKPHLRNLFF 58
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQT---RLASTITEQMS 239
RI L +K VFV +G P+LK I+ R+Q+ +T + + + +
Sbjct: 59 RISCLTLMDVKLVFVMEGEPPKLKADVINK----RNQIRYGPSGKTWSHKTGRSHFKSVL 114
Query: 240 REAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--D 297
+E ++L+ G+P++ A GEAEA CA L G +T+D D +L+GA+TVY+NF
Sbjct: 115 KECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQTVYRNFTMNT 174
Query: 298 KKSHVLRYTAPDIR 311
K HV YT I+
Sbjct: 175 KDPHVDCYTMSSIK 188
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 48/126 (38%), Positives = 70/126 (55%)
Query: 176 HLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLASTIT 235
+L L+ R IK VFV +G P+LK T+S + R + G R +
Sbjct: 62 NLENLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGASNKHGV-ARTGRSSF 120
Query: 236 EQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
+ + +E +LL+ GVP++ A GEAEA CA L H G IT+D D++L+GA+TVY+NF
Sbjct: 121 KSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNF 180
Query: 296 -FDKKS 300
+ KS
Sbjct: 181 AMNSKS 186
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 208 (78.3 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 48/122 (39%), Positives = 70/122 (57%)
Query: 192 IKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGV 251
IK VFV +G P+LK T+S + R + G R + + + +E +LL+ GV
Sbjct: 3 IKLVFVMEGEAPKLKADTMSKRNEIRYGASNKHGV-ARTGRSSFKSILKECLQLLECLGV 61
Query: 252 PFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--DKKSHVLRYTAPD 309
P++ A GEAEA CA L H G IT+D D++L+GA+TVY+NF K+ H+ YT
Sbjct: 62 PWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKEPHLDCYTMSS 121
Query: 310 IR 311
I+
Sbjct: 122 IK 123
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 194 (73.4 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 50/164 (30%), Positives = 85/164 (51%)
Query: 144 KLLVDLISDVSIWLHQLTKGTHDLAGGS-VPNAHLIGLYHRICKLLFFKIKPVFVFDGGV 202
K+ +D + +L + +G L +HL+G+++R +++ IKPV+VFDG
Sbjct: 30 KVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMFYRTIRMVENGIKPVYVFDGKP 89
Query: 203 PQLK-----KQTISTLEKDRD-QLLLERGKQTRLAS------TITEQMSREAQELLQLFG 250
PQLK K+T E ++ Q E G++ + +T+Q + E ++LL L G
Sbjct: 90 PQLKSGELAKRTERRSEAEKHLQEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMG 149
Query: 251 VPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 294
+P++ APGEAEA CA+L T+D D FG+ + ++
Sbjct: 150 IPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRH 193
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 194 (73.4 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 49/146 (33%), Positives = 78/146 (53%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPN------AHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D S+ L+Q GG + N +HL+G+++R +++ IKP +VFDG P L
Sbjct: 34 DASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDL 93
Query: 206 KKQTI---STLEKDRDQLL------LERGKQTRLASTITEQMSREAQELLQLFGVPFIVA 256
K + S+ + ++ L LE+ KQ R ++++ + EAQ+LL L G+P+I+A
Sbjct: 94 KSHELTKRSSRRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIA 153
Query: 257 PGEAEAQCASLELGNHTQGVITDDSD 282
P EAEAQCA L ++D D
Sbjct: 154 PTEAEAQCAELAKKGKVYAAASEDMD 179
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 194 (73.4 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 47/128 (36%), Positives = 71/128 (55%)
Query: 173 PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQL------LLERG- 225
P +HL+G+++R +LL IKPV+VFDG P LK ++ + R++ + G
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 226 -----KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDD 280
K R +T++ ++EA+ELL L GVP++ AP EAEAQCA+L T+D
Sbjct: 120 DAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 281 SDIWLFGA 288
D FG+
Sbjct: 180 MDALTFGS 187
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 193 (73.0 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 58/172 (33%), Positives = 88/172 (51%)
Query: 144 KLLVDLISDVSIWLHQLTK-GTHDLAG--GSVPNAHLIGLYHRICKLLFFKIKPVFVFDG 200
K+ VD + +L + + GT L G V +HL G+++R +LL IKPV+VFDG
Sbjct: 30 KIAVDASMSIYQFLIVVGRTGTEMLTNEAGEV-TSHLQGMFNRTIRLLEAGIKPVYVFDG 88
Query: 201 GVPQLKKQTIST-LEKDRDQLL-----LERG------KQTRLASTITEQMSREAQELLQL 248
P+LK+Q ++ K D +E G K ++ +T+Q + + + LL+L
Sbjct: 89 KPPELKRQELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRL 148
Query: 249 FGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKS 300
GVP + A EAEAQCA+L GV ++D D FGA ++ D S
Sbjct: 149 MGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSS 200
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 188 (71.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 47/132 (35%), Positives = 74/132 (56%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIST-LEK--DRDQLLL---ERGKQT 228
+HL+G+++R ++L IKPV+VFDG PQLK + +E+ + ++LL E G+Q
Sbjct: 62 SHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQE 121
Query: 229 RLAS------TITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
+ +T+Q + E ++LL L GVP+I AP EAEA CA+L T+D D
Sbjct: 122 NIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATEDMD 181
Query: 283 IWLFGARTVYKN 294
FG + ++
Sbjct: 182 GLTFGTTVLLRH 193
>WB|WBGene00020442 [details] [associations]
symbol:gen-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0008821 "crossover junction
endodeoxyribonuclease activity" evidence=IDA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IMP] [GO:0072422 "signal
transduction involved in DNA damage checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0005737
GO:GO:0008630 GO:GO:0003677 GO:GO:0000003 GO:GO:0000724
GO:GO:0008821 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091542 EMBL:FO080619 PIR:T34350
RefSeq:NP_498361.1 ProteinModelPortal:Q22418 STRING:Q22418
EnsemblMetazoa:T12A2.8.1 EnsemblMetazoa:T12A2.8.2 GeneID:175885
KEGG:cel:CELE_T12A2.8 UCSC:T12A2.8.1 CTD:175885 WormBase:T12A2.8
HOGENOM:HOG000021109 InParanoid:Q22418 OMA:HIWLYES NextBio:890148
GO:GO:0072422 Uniprot:Q22418
Length = 434
Score = 184 (69.8 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 54/161 (33%), Positives = 84/161 (52%)
Query: 141 VINKLLVD--LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVF 198
V N+ + D L D IWL++ KG + PN++L+ + RI +LL KI P+ VF
Sbjct: 17 VPNETMRDKTLSIDGHIWLYESLKGC-EAHHQQTPNSYLVTFFTRIQRLLELKIIPIVVF 75
Query: 199 DGGVPQLKKQTISTLEKDRDQLLLERGKQTRLASTITEQMSR--EAQELLQLFGVPFIVA 256
D + + + KD+++ + R +++ S T + + LL G+ I+A
Sbjct: 76 DN----INASSSAHESKDQNEFV-PRKRRSFGDSPFTNLVDHVYKTNALLTELGIKVIIA 130
Query: 257 PGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD 297
PG+ EAQCA LE T G IT D D +LFG + +Y+ FD
Sbjct: 131 PGDGEAQCARLEDLGVTSGCITTDFDYFLFGGKNLYR--FD 169
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 182 (69.1 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 44/132 (33%), Positives = 72/132 (54%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK-----KQTISTLEKDRD-QLLLERG--- 225
+HL+G+++R +++ IKPV++FDG PQLK K++ E ++ Q E G
Sbjct: 62 SHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGAEE 121
Query: 226 ---KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
K T+ +T+Q + E + LL L G+P++ AP EAEA CA+L T+D D
Sbjct: 122 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMD 181
Query: 283 IWLFGARTVYKN 294
FG+ + ++
Sbjct: 182 CLTFGSPVLMRH 193
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 181 (68.8 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 44/133 (33%), Positives = 72/133 (54%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQL--LLERGKQT---- 228
+HL+G+++R ++L IKPV+VFDG PQ+K ++ + R + LLE ++
Sbjct: 62 SHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVE 121
Query: 229 -------RLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 281
RL +T+Q + E ++LL L G+P++ AP EAEA CA+L T+D
Sbjct: 122 NIEKFNKRLVK-VTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDM 180
Query: 282 DIWLFGARTVYKN 294
D FG + ++
Sbjct: 181 DALTFGTPVLLRH 193
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 180 (68.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 42/132 (31%), Positives = 72/132 (54%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQL--LLERGKQ----- 227
+HL+G+++R +++ IKPV+VFDG PQ+K ++ + R + LLE ++
Sbjct: 62 SHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVE 121
Query: 228 -----TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
T+ +T+Q + E ++LL L G+P++ AP EAEA CA+L T+D D
Sbjct: 122 NIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMD 181
Query: 283 IWLFGARTVYKN 294
FG + ++
Sbjct: 182 ALTFGTPVLLRH 193
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 46/132 (34%), Positives = 72/132 (54%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDR---DQLLL---ERG--- 225
+H+ GL R +L+ +KP++VFDG P+LK + + R ++LL E G
Sbjct: 64 SHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLE 123
Query: 226 ---KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
KQ+ +T + + EA++LL L G+P I AP EAE+QCA L N T+D+D
Sbjct: 124 EIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDAD 183
Query: 283 IWLFGARTVYKN 294
+FG + + +N
Sbjct: 184 ALVFGTKILIRN 195
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 46/132 (34%), Positives = 72/132 (54%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDR---DQLLL---ERG--- 225
+H+ GL R +L+ +KP++VFDG P+LK + + R ++LL E G
Sbjct: 64 SHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLE 123
Query: 226 ---KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
KQ+ +T + + EA++LL L G+P I AP EAE+QCA L N T+D+D
Sbjct: 124 EIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDAD 183
Query: 283 IWLFGARTVYKN 294
+FG + + +N
Sbjct: 184 ALVFGTKILIRN 195
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 178 (67.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 43/132 (32%), Positives = 69/132 (52%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIST-------LEKDRDQLLLERGKQ 227
+HL+G+++R +++ IKPV+VFDG PQLK ++ EK Q +Q
Sbjct: 62 SHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQ 121
Query: 228 -----TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
T+ +T+Q + E + LL L G+P++ AP EAEA CA+L T+D D
Sbjct: 122 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMD 181
Query: 283 IWLFGARTVYKN 294
FG+ + ++
Sbjct: 182 CLTFGSPVLMRH 193
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 178 (67.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 45/132 (34%), Positives = 69/132 (52%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIST-------LEKDRDQLLL----- 222
+HL+G+++R +++ IKPV+VFDG PQLK ++ EK Q
Sbjct: 62 SHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAGE 121
Query: 223 ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
E K T+ +T+Q + E + LL L GVP++ AP EAEA CA+L T+D D
Sbjct: 122 EVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMD 181
Query: 283 IWLFGARTVYKN 294
FG+ + ++
Sbjct: 182 CLTFGSPVLMRH 193
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 178 (67.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 45/133 (33%), Positives = 71/133 (53%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDR---DQLLLE---RG--- 225
+HL+G+ +R ++ +KPV+VFDG P +K + + R ++ L E +G
Sbjct: 62 SHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDVK 121
Query: 226 ---KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
K R +T+Q + EA+ LL L G+P + AP EAEAQCA L G +T+D D
Sbjct: 122 EAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMD 181
Query: 283 IWLFGARTVYKNF 295
FG+ + ++F
Sbjct: 182 ALTFGSTVLLRHF 194
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 177 (67.4 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 44/132 (33%), Positives = 72/132 (54%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDR---DQLLLER---G--- 225
+HL+G+++R +++ IKPV+VFDG PQLK ++ + R ++ L E G
Sbjct: 62 SHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEA 121
Query: 226 ---KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
K T+ +T+Q + E + LL L G+P++ AP EAEA CA+L T+D D
Sbjct: 122 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMD 181
Query: 283 IWLFGARTVYKN 294
FG+ + ++
Sbjct: 182 CLTFGSPVLMRH 193
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 177 (67.4 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 44/132 (33%), Positives = 69/132 (52%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIST-------LEKDRDQLLL----- 222
+HL+G+++R +++ IKPV+VFDG PQLK ++ EK Q
Sbjct: 62 SHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEE 121
Query: 223 ERGKQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
E K T+ +T+Q + E + LL L G+P++ AP EAEA CA+L T+D D
Sbjct: 122 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMD 181
Query: 283 IWLFGARTVYKN 294
FG+ + ++
Sbjct: 182 CLTFGSPVLMRH 193
>DICTYBASE|DDB_G0294290 [details] [associations]
symbol:DDB_G0294290 "xeroderma pigmentosum group G
(XPG) family protein" species:44689 "Dictyostelium discoideum"
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 SMART:SM00485 dictyBase:DDB_G0294290 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
EMBL:AAFI02000262 RefSeq:XP_628749.1 ProteinModelPortal:Q54AQ1
EnsemblProtists:DDB0232365 GeneID:3385413 KEGG:ddi:DDB_G0294290
OMA:ENQNLIN Uniprot:Q54AQ1
Length = 977
Score = 182 (69.1 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 149 LISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQ 208
L D SIW+H + + G + NA ++G + RICKLL ++KP+FVFDGGVP LK++
Sbjct: 27 LAIDASIWIHTFIRTLKNEKGDPMTNAPILGFFRRICKLLSLRVKPIFVFDGGVPYLKRR 86
Query: 209 TISTLEKDRD---QLLLERGKQTRLASTITEQM 238
TI K R+ Q + + ++ L +TI +Q+
Sbjct: 87 TIEERRKRRERAEQNIEKNQRRLLLINTIKKQL 119
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 176 (67.0 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 40/124 (32%), Positives = 69/124 (55%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLL--LERGKQTRLAS 232
+HL+G+++R +++ IKP++VFDG P+LK ++ + + + L LE ++T A
Sbjct: 62 SHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETGTAE 121
Query: 233 TI----------TEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
+ T + + E ++LL+L G+P+I+AP EAEAQCA L ++D D
Sbjct: 122 DVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMD 181
Query: 283 IWLF 286
F
Sbjct: 182 TLCF 185
>UNIPROTKB|F5H1Y3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007613 "memory" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00485 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081 GO:GO:0048256
HGNC:HGNC:3650 ChiTaRS:FEN1 EMBL:AP002380 IPI:IPI01009939
ProteinModelPortal:F5H1Y3 SMR:F5H1Y3 Ensembl:ENST00000535723
ArrayExpress:F5H1Y3 Bgee:F5H1Y3 Uniprot:F5H1Y3
Length = 165
Score = 153 (58.9 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 37/104 (35%), Positives = 58/104 (55%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIST-------LEKDRDQLLLERGKQ 227
+HL+G+++R +++ IKPV+VFDG PQLK ++ EK Q +Q
Sbjct: 62 SHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQ 121
Query: 228 -----TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCAS 266
T+ +T+Q + E + LL L G+P++ AP EAEA CA+
Sbjct: 122 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAA 165
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 52/154 (33%), Positives = 76/154 (49%)
Query: 152 DVSIWLHQLT-KGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTI 210
D +WLH+ H+LA + +L H+ L ++ +KP+ VFDGG P K +
Sbjct: 30 DGYVWLHKAVFTCAHELAFNKETDKYLKYAIHQALMLQYYGVKPLIVFDGG-PLPCKAST 88
Query: 211 STLEKDRDQLLLERGK-------------QTRLASTITEQMSREAQELLQLFGVPFIVAP 257
K+R Q E GK Q +T +M+ + L+ G+ IVAP
Sbjct: 89 EQKRKERRQEAFELGKKLWDEGKKSQAIMQFSRCVDVTPEMAWKLIIALREHGIESIVAP 148
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
EA+AQ LE N G+IT+DSD+ +FGA+TV
Sbjct: 149 YEADAQLVYLEKENIIDGIITEDSDMLVFGAQTV 182
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 170 (64.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK-----KQTISTLEKDRDQLLL-ERGK-- 226
+HL G+++R K++ IKPV+VFDG P LK K+ + E + + L + G
Sbjct: 63 SHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGTVE 122
Query: 227 -----QTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 281
+ RL +T + + EA++LLQL G+P + AP EAEAQCA L G ++D
Sbjct: 123 EVLKFEKRLVR-VTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDM 181
Query: 282 D 282
D
Sbjct: 182 D 182
>UNIPROTKB|G4NE19 [details] [associations]
symbol:MGG_00841 "Exonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 EMBL:CM001235 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_003718138.1
ProteinModelPortal:G4NE19 EnsemblFungi:MGG_00841T0 GeneID:2674671
KEGG:mgr:MGG_00841 Uniprot:G4NE19
Length = 780
Score = 175 (66.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 50/154 (32%), Positives = 77/154 (50%)
Query: 149 LISDVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKK 207
L D WLH+ +LA G ++ HR+ + +F P VFDG K
Sbjct: 27 LAVDAYGWLHRGAVSCALELAQGKPTRKYVDFAMHRVRMVKYFGATPYIVFDGDFLPSKA 86
Query: 208 QTISTLEKDRDQL------LLERGKQTRL------ASTITEQMSREAQELLQLFGVPFIV 255
T ++ K R++ LL+ GK + A +T +M+RE E L+ VP++V
Sbjct: 87 LTEASRAKRREESKKAGMELLKAGKPAQAYQEFQKAIDVTPEMARELIEELKKIDVPYVV 146
Query: 256 APGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 289
AP EA+AQ LE + G+I++DSD+ +FGA+
Sbjct: 147 APYEADAQMVYLERNGYVSGIISEDSDLLVFGAK 180
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 173 (66.0 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 49/167 (29%), Positives = 80/167 (47%)
Query: 152 DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTIS 211
D+S W+ +L K + +L G +HR+ L+ + V DG +P +K T
Sbjct: 30 DLSCWMVELHKVNKSYCA-TKEKVYLRGFFHRLRALIALNCSIILVSDGAIPGIKVPTYK 88
Query: 212 TLEKDRDQLL---LERGKQTRLASTITEQMS---REAQELLQLFGVPFIVAPGEAEAQCA 265
K R ++ +E K+T L + + S +EA+ + G+ + EAEAQCA
Sbjct: 89 RRLKARFEIADDGVEPSKETSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCA 148
Query: 266 SLELGNHTQGVITDDSDIWLFGARTVYKNF-FDKKSHVLRYTAPDIR 311
L + + DSDI+LFGA+TVY+ + +V+ Y DI+
Sbjct: 149 LLNSESLCDACFSFDSDIFLFGAKTVYREICLGEGGYVVCYEMDDIK 195
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 169 (64.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 49/163 (30%), Positives = 80/163 (49%)
Query: 144 KLLVDLISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVP 203
K+ +D + +L + +G L L+G+++R ++ IKPV+VFDG P
Sbjct: 30 KVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSLMGMFYRTIRMEN-GIKPVYVFDGKPP 88
Query: 204 QLK-----KQTISTLEKDRD-QLLLERG------KQTRLASTITEQMSREAQELLQLFGV 251
QLK K++ E ++ Q E G K T+ +T+Q + E + LL L G+
Sbjct: 89 QLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGI 148
Query: 252 PFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKN 294
P++ AP EAEA CA+L T+D D FG+ + ++
Sbjct: 149 PYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRH 191
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 169 (64.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 44/133 (33%), Positives = 69/133 (51%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLAST- 233
+HL+G+++R +++ IKP FVFDG P LK ++ R Q E ++T+ T
Sbjct: 63 SHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAK-RVARHQKAREDQEETKEVGTA 121
Query: 234 ------------ITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDS 281
+T Q + EA+ LL+L G+PF+ AP EAEAQCA+L ++D
Sbjct: 122 EMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDM 181
Query: 282 DIWLFGARTVYKN 294
D F A + ++
Sbjct: 182 DTLCFQAPVLLRH 194
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 168 (64.2 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 49/142 (34%), Positives = 67/142 (47%)
Query: 170 GSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTR 229
G + + L GL++R L IKPVFV DG P K+ + LEK R Q G +
Sbjct: 48 GHLKLSPLAGLFYRTLAFLEHDIKPVFVLDGKPPHQKR---AVLEK-RAQ---STGWSSS 100
Query: 230 LASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGAR 289
+ ++E LL L GVP I APGEAEA CA L V ++D D FG
Sbjct: 101 QSPNTGSAFNQECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGT 160
Query: 290 TVYKNFFDKK-SHVLRYTAPDI 310
+ + K+ S + Y+ P +
Sbjct: 161 VLLRQLNAKRDSEITEYSLPKL 182
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 172 (65.6 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 48/137 (35%), Positives = 70/137 (51%)
Query: 173 PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLAS 232
P HL L+ R C L++ ++ PVFV +G P+LK Q I+ R++L RG + + +
Sbjct: 48 PRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAK----RNELQF-RGVKPKNSP 102
Query: 233 TITEQM--------SR------EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVIT 278
T+ SR + + LL G+ + PGEAEA CA L GVI+
Sbjct: 103 ECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVIS 162
Query: 279 DDSDIWLFGARTVYKNF 295
DSD + +GA VY+NF
Sbjct: 163 QDSDCFAYGAVRVYRNF 179
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 167 (63.8 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 46/158 (29%), Positives = 79/158 (50%)
Query: 144 KLLVDL-ISDVSIWLHQLTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGV 202
K+ +D +S S + ++G ++ +HL+G+++R +++ IKP++VFDG
Sbjct: 30 KVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAP 89
Query: 203 PQLKKQTIS--TLEKDRDQLLLERGKQTRLASTI----------TEQMSREAQELLQLFG 250
P+LK ++ + K E K+T A + T + + E ++LL+L G
Sbjct: 90 PKLKSGELAKRSARKHEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMG 149
Query: 251 VPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGA 288
+P+I AP EAEAQCA L ++D D F A
Sbjct: 150 IPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEA 187
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 171 (65.3 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 46/133 (34%), Positives = 70/133 (52%)
Query: 173 PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQ----T 228
P HL L+ R C L++ ++ PVFV +G P+LK Q I+ +++ Q R K T
Sbjct: 48 PRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKGQVIA--KRNELQFRGVRPKDAATGT 105
Query: 229 RLASTITEQMSR------EAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
+ A+ + + +R + + LL G+ + PGEAEA A L GVI+ DSD
Sbjct: 106 QTAAKVDKGRTRFNHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSD 165
Query: 283 IWLFGARTVYKNF 295
+ +GA VY+NF
Sbjct: 166 CFAYGAIRVYRNF 178
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 166 (63.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 51/155 (32%), Positives = 77/155 (49%)
Query: 152 DVSIWLHQLTKGTHD-LAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTI 210
D WLH+ + G + LA G + +++ + LL F IKPV VFDG KK+ +
Sbjct: 30 DAYCWLHKGSYGCAEKLARGEPTDHYVVFCMKLVDMLLSFGIKPVLVFDGCTLPSKKE-V 88
Query: 211 STLEKDRDQLLLERGKQT----RLAST---------ITEQMSREAQELLQLFGVPFIVAP 257
+++ Q L +GKQ +L+ +T M+ E + + GV IVAP
Sbjct: 89 EKARREKRQANLLKGKQLFREGKLSEARDCFARSVNVTHAMAHEVIKAARARGVDCIVAP 148
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTVY 292
EA+AQ A L Q +IT+DSD+ FG + V+
Sbjct: 149 YEADAQLAYLNKTGVVQAIITEDSDLLAFGCKKVF 183
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 161 (61.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 46/146 (31%), Positives = 73/146 (50%)
Query: 175 AHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLE---KDRDQLLLER---G--- 225
+HL G+++R KL+ IKP++VFDG P LK ++ + K+ + L E G
Sbjct: 63 SHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGTNE 122
Query: 226 ---KQTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSD 282
K + T+T + + + +LL L GVP + AP EAEAQCA + ++D D
Sbjct: 123 EVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMD 182
Query: 283 IWLFGARTVYKN-FFD--KKSHVLRY 305
G+ + + FF KK +L +
Sbjct: 183 SLTLGSTVLLRRLFFSEAKKMPILEF 208
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 161 (61.7 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 53/167 (31%), Positives = 77/167 (46%)
Query: 152 DVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDG-GVPQLKKQT 209
D WLH+ LA G + ++ + LL F +KP+ VFDG +P KQ
Sbjct: 30 DTYCWLHKGAFSCAEKLAKGEPTDQYVSYCMKFVDMLLSFGVKPILVFDGRNLPS--KQE 87
Query: 210 ISTLEKDRDQLLLERGKQTRLASTITE-------------QMSREAQELLQLFGVPFIVA 256
+ ++R Q L++GKQ ITE M+ + + GV +VA
Sbjct: 88 VEKSRRERRQANLQKGKQLLREGKITEARECFTRSVNITPSMAHDVIRAARTRGVDCVVA 147
Query: 257 PGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVL 303
P EA+AQ A L + Q VIT+DSD+ FG + V DK+ + L
Sbjct: 148 PYEADAQLAFLNKSDIAQAVITEDSDLLAFGCKKVILKM-DKQGNGL 193
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 160 (61.4 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 51/162 (31%), Positives = 78/162 (48%)
Query: 149 LISDVSIWLHQLTKG-THDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKK 207
L D WLH+ ++LA G + +L R L FK++P VFDG +KK
Sbjct: 27 LAIDGYAWLHRAACSCAYELAMGKPTDKYLQFFIKRFSLLKTFKVEPYLVFDGDAIPVKK 86
Query: 208 QTISTLEKDR--DQLLLER----GKQTRLAS------TITEQMSREAQELLQLFGVPFIV 255
T S R ++ + ER G++ IT +M++ +L G+ +IV
Sbjct: 87 STESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEMAKCIICYCKLNGIRYIV 146
Query: 256 APGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD 297
AP EA++Q LE N QG+I++DSD+ +FG R + D
Sbjct: 147 APFEADSQMVYLEQKNIVQGIISEDSDLLVFGCRRLITKLND 188
>ASPGD|ASPL0000033989 [details] [associations]
symbol:AN3035 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
EMBL:BN001306 EMBL:AACD01000051 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_660639.1
ProteinModelPortal:Q5B8U5 STRING:Q5B8U5
EnsemblFungi:CADANIAT00010044 GeneID:2874467 KEGG:ani:AN3035.2
HOGENOM:HOG000196065 OMA:KTAYRSI Uniprot:Q5B8U5
Length = 761
Score = 160 (61.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 49/167 (29%), Positives = 79/167 (47%)
Query: 156 WLHQLTKGTH-DLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDG-GVP-----QLKKQ 208
WLH+ T DL H+ + R+ LLFF +KP VFDG +P +L +Q
Sbjct: 34 WLHRGTVACAVDLVLDRPTTKHIDFVLSRVRMLLFFGVKPYLVFDGDNLPSKSGTELDRQ 93
Query: 209 TISTLEKDRDQLLLERGK------QTRLASTITEQMSREAQELLQLFGVPFIVAPGEAEA 262
K L +G+ + + A +T M+R+ E L+ + ++VAP EA+A
Sbjct: 94 QRRHESKTLGMELYRKGRTAEAYQELQKAVDVTPLMARQLIEELKKLDIQYVVAPYEADA 153
Query: 263 QCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPD 309
Q LE G+I++DSD+ +FGA+ + D+ ++ D
Sbjct: 154 QLVYLEKHGFIDGIISEDSDLLVFGAKRLLSKL-DQHGELIEINRAD 199
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 159 (61.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 48/154 (31%), Positives = 75/154 (48%)
Query: 152 DVSIWLHQLTKGTHD-LAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTI 210
D WLH+ + LA G + ++ + LL F +KP+ VFDG KK +
Sbjct: 30 DTYCWLHKGAFACAEKLAKGEPTDQYVQFCMKLVHMLLSFGVKPILVFDGCTLPSKKD-V 88
Query: 211 STLEKDRDQLLLERGKQT----RLAST---------ITEQMSREAQELLQLFGVPFIVAP 257
+++ Q L++GKQ +LA IT M+ E + + GV +IVAP
Sbjct: 89 EKARREKRQTNLQKGKQLLREGKLAEARECFSRSVNITSSMAHEVIKAARSEGVDYIVAP 148
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
EA++Q A L + + +IT+DSD+ FG + V
Sbjct: 149 YEADSQLAYLNKNDFAEAIITEDSDLLAFGCKKV 182
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 155 (59.6 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 50/170 (29%), Positives = 80/170 (47%)
Query: 152 DVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTI 210
D WLH+ + +L G H+ HR+ L +KP+ VFDGG +K +
Sbjct: 30 DTYSWLHKGALSCSRELCKGLPTKRHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQE 89
Query: 211 STLEKDRDQLL---LER---GKQTRL------ASTITEQMSREAQELLQLFGVPFIVAPG 258
+ + R + L LE G + A I+ ++ E ++L+ V ++VAP
Sbjct: 90 NKRARSRKENLARALEHEANGNSSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPY 149
Query: 259 EAEAQCASLELGNHTQGVITDDSDIWLFGA-RTVYKNFFDKKSHVLRYTA 307
EA+AQ A L + +IT+DSD+ FG R ++K DK H + + A
Sbjct: 150 EADAQMAFLAITKQVDAIITEDSDLIPFGCLRIIFK--MDKFGHGVEFQA 197
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 155 (59.6 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 51/154 (33%), Positives = 72/154 (46%)
Query: 152 DVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLF-FKIKPVFVFDG-GVPQLKKQ 208
D WLH+ LA G P +G + +L + +KP+ VFDG +P K+
Sbjct: 30 DTYCWLHKGAIACAEKLAKGE-PTDRYVGFCMKFVNMLLSYGVKPILVFDGCTLPSKKEV 88
Query: 209 TISTLEKDRDQLL-----LERGK--QTRLAST----ITEQMSREAQELLQLFGVPFIVAP 257
S E+ + LL L GK + R T IT M+ + + + GV +VAP
Sbjct: 89 ERSRRERRQSNLLKGKQLLREGKVSEARECFTRSVNITHAMAHKVIKAARALGVDCLVAP 148
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
EA+AQ A L Q VIT+DSD+ FG + V
Sbjct: 149 YEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKV 182
>UNIPROTKB|G4MVT4 [details] [associations]
symbol:MGG_01800 "Flap structure-specific endonuclease"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 EMBL:CM001232 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K15339 RefSeq:XP_003714807.1 ProteinModelPortal:G4MVT4
EnsemblFungi:MGG_01800T0 GeneID:2679379 KEGG:mgr:MGG_01800
Uniprot:G4MVT4
Length = 932
Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 169 GGSVPNAHLIGLYHRICKLLFFKIKPVFVFDG-GVPQLKKQTISTLEKDRDQLLLERGKQ 227
GG+ NA L++R+ +LL I+P+FVFDG P K+ ST RG
Sbjct: 51 GGA--NAPTRTLFYRLARLLGHSIQPIFVFDGPNKPAFKRNRRSTT----------RGGA 98
Query: 228 TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 287
T ++ M A+ +++LFG F APGEAEA+CA L+ V+++D D +FG
Sbjct: 99 T--GDVVSNAM---AKRMIRLFGFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFG 153
Query: 288 ARTVYKNF 295
+N+
Sbjct: 154 CTRTLRNW 161
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 48/154 (31%), Positives = 70/154 (45%)
Query: 152 DVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLF-FKIKPVFVFDG-GVPQLKKQ 208
D WLH+ LA G P +G + +L + +KP+ +FDG +P K+
Sbjct: 30 DTYCWLHKGAIACAEKLAKGE-PTDRYVGFCMKFVNMLLSYGVKPILIFDGCTLPSKKEV 88
Query: 209 TISTLEKDRDQLL-----LERGKQTRLAS------TITEQMSREAQELLQLFGVPFIVAP 257
S E+ + LL L GK + IT M+ + + + GV +VAP
Sbjct: 89 ERSRRERRQSNLLKGKQLLREGKVSEARDCFARSINITHAMAHKVIKAARALGVDCLVAP 148
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
EA+AQ A L Q VIT+DSD+ FG + V
Sbjct: 149 YEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKV 182
>SGD|S000002671 [details] [associations]
symbol:DIN7 "Mitochondrial nuclease functioning in DNA repair
and replication" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
SGD:S000002671 GO:GO:0005739 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006938 GO:GO:0004519 EMBL:Z70202
EMBL:Z68290 GO:GO:0004518 RefSeq:NP_010553.3 GeneID:851860
KEGG:sce:YDR267C EMBL:X90707 PIR:S61118 RefSeq:NP_010549.3
ProteinModelPortal:Q12086 SMR:Q12086 DIP:DIP-5214N IntAct:Q12086
MINT:MINT-493226 STRING:Q12086 EnsemblFungi:YDR263C GeneID:851856
KEGG:sce:YDR263C CYGD:YDR263c eggNOG:COG0258
GeneTree:ENSGT00510000047676 OrthoDB:EOG44QX8J NextBio:969788
Genevestigator:Q12086 GermOnline:YDR263C PANTHER:PTHR11081
SUPFAM:SSF47807 Uniprot:Q12086
Length = 430
Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 47/163 (28%), Positives = 77/163 (47%)
Query: 149 LISDVSIWLHQLTKG-THDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKK 207
L D WLH+ + +L N +L R+ L KIKP VFDG +K
Sbjct: 27 LAIDGYAWLHRASCACAFELVMNKPTNKYLQFFIKRLQLLKRLKIKPYIVFDGDSLFVKN 86
Query: 208 QTISTLEKDR--DQLLLER----GKQTRLAS------TITEQMSREAQELLQLFGVPFIV 255
T + K R ++++ ++ G + IT +M++ + +L +P+IV
Sbjct: 87 HTETRRRKKRLENEMIAKKLWSAGNRYNAMEYFQKSVDITPEMAKCIIDYCKLHSIPYIV 146
Query: 256 APGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDK 298
AP EA+ Q LE QG+I++DSD+ +FG +T+ D+
Sbjct: 147 APFEADPQMVYLEKMGLIQGIISEDSDLLVFGCKTLITKLNDQ 189
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 145 (56.1 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 46/162 (28%), Positives = 73/162 (45%)
Query: 149 LISDVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKK 207
L D WLH+ L +L G ++ + ++I L F I P FVFDG K+
Sbjct: 27 LAIDTYGWLHRALVSCAEELCLGKPTRNYITAILNKIQMLNHFGITPYFVFDGASLPTKQ 86
Query: 208 QTISTLEKDRDQL--LLERG----------KQTRLASTITEQMSREAQELLQLFGVPFIV 255
+T + R + L E+ KQ A+ +T QM++ L + +IV
Sbjct: 87 ETNRERQLKRQEAKELAEKYIAANNRKLAYKQFMKAAYVTSQMAKSVMCELDNLSIKYIV 146
Query: 256 APGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFD 297
AP EA+ Q LE G++++DSD+ +FG + + D
Sbjct: 147 APYEADPQMVYLEKMGIVDGILSEDSDLLIFGCKKLITKLKD 188
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 145 (56.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 52/154 (33%), Positives = 72/154 (46%)
Query: 152 DVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFK-IKPVFVFDG-GVPQLKKQ 208
D WLH+ LA G P +G ++ +L IKP+ VFDG +P K+
Sbjct: 30 DTYCWLHKGAVACAEKLAKGE-PTDKYVGFCMKLVNMLLSHGIKPILVFDGCTLPSKKEV 88
Query: 209 TISTLEKDRDQLL-----LERGK--QTR---LAS-TITEQMSREAQELLQLFGVPFIVAP 257
S E+ + LL L GK + R + S IT M+ + + GV +VAP
Sbjct: 89 EKSRRERRQANLLKGKQLLREGKVSEARECFIRSINITHTMAHNVIKAARSQGVDCLVAP 148
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
EA+AQ A L Q VIT+DSD+ FG + V
Sbjct: 149 YEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKV 182
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 145 (56.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 51/154 (33%), Positives = 70/154 (45%)
Query: 152 DVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFK-IKPVFVFDG-GVPQLKKQ 208
D WLH+ LA G P +G + +L IKP+ VFDG +P K+
Sbjct: 30 DTYCWLHKGAVACAEKLAKGE-PTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEV 88
Query: 209 TISTLEKDRDQLL-----LERGK--QTRLAST----ITEQMSREAQELLQLFGVPFIVAP 257
S E+ + LL L GK + R T IT M+ + + GV +VAP
Sbjct: 89 EKSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHSVIKAARAQGVDCLVAP 148
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
EA+AQ A L Q +IT+DSD+ FG + V
Sbjct: 149 YEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKV 182
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 145 (56.1 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 51/154 (33%), Positives = 71/154 (46%)
Query: 152 DVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFK-IKPVFVFDG-GVPQLKKQ 208
D WLH+ LA G P +G + +L IKP+ VFDG +P K+
Sbjct: 30 DTYCWLHKGAIACAEKLAKGE-PTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEV 88
Query: 209 TISTLEKDRDQLL-----LERGK--QTRLAST----ITEQMSREAQELLQLFGVPFIVAP 257
S E+ + LL L GK + R T IT M+ + + + GV +VAP
Sbjct: 89 ERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAP 148
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
EA+AQ A L Q +IT+DSD+ FG + V
Sbjct: 149 YEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKV 182
>DICTYBASE|DDB_G0291570 [details] [associations]
symbol:exo1 "5'3'-exonuclease N- and
I-domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019734 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0291570 GO:GO:0005634
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0004519
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_635308.1 ProteinModelPortal:Q54ED2
EnsemblProtists:DDB0232997 GeneID:8628252 KEGG:ddi:DDB_G0291570
OMA:KSQANIC Uniprot:Q54ED2
Length = 1046
Score = 144 (55.7 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 52/170 (30%), Positives = 87/170 (51%)
Query: 156 WLHQLTKG-THDLAGGSVPNAHLIGLY-HRICKLLFFKIKPVFVFDGG-VP--QLKKQT- 209
WLH+ + ++ G +P + I + RI L+ +K+ PV +FDGG +P +LK+Q
Sbjct: 34 WLHKGAYSCSQEIVLG-IPTRNYINYFISRIKMLISYKVIPVVIFDGGPLPNKKLKEQER 92
Query: 210 ISTLEKDRDQL---LLERGK-QTRL----ASTITEQMSREAQELLQLFGVPFIVAPGEAE 261
+ E+ +++ LLE K Q + A IT +M+ + L+ V ++VAP EA+
Sbjct: 93 LRHREEYKNKAKAYLLEGNKSQANICFQKAVDITPRMAFLLIKELRALKVEYLVAPYEAD 152
Query: 262 AQCASLELGNHTQGVITDDSDIWLFGA-RTVYKNFFDKKSHVLRYTAPDI 310
AQ L + +IT+DSD+ FGA ++K DK + D+
Sbjct: 153 AQLTYLSITGQVDAIITEDSDLVAFGATHIIFK--MDKYGYAQEIKTEDL 200
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/155 (30%), Positives = 71/155 (45%)
Query: 152 DVSIWLHQ-LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFK-IKPVFVFDGGVPQLKKQT 209
D WLH+ LA G P +G + +L IKPV +FDG KK+
Sbjct: 30 DTYCWLHKGAIACAEKLARGE-PTDKYVGFCMKFVNMLLSHGIKPVLIFDGCTLPSKKE- 87
Query: 210 ISTLEKDRDQLLLERGKQT----RLAST---------ITEQMSREAQELLQLFGVPFIVA 256
+ ++R Q L +GKQ +++ IT M+ + + + GV +VA
Sbjct: 88 VEKSRRERRQANLLKGKQLLREGKVSEARECFSRSINITHAMAHKVIKAARSQGVDCLVA 147
Query: 257 PGEAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
P EA+AQ A L Q +IT+DSD+ FG + V
Sbjct: 148 PYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKV 182
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 139 (54.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 46/153 (30%), Positives = 71/153 (46%)
Query: 152 DVSIWLHQLTKGTHD-LAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDG------GVPQ 204
D WLH+ G + LA G + ++ + LL + IKP+ VFDG + +
Sbjct: 30 DTYCWLHKGVFGCAEKLARGEDTDVYIQYCLKYVNMLLSYDIKPILVFDGQHLPAKALTE 89
Query: 205 LKKQTISTLEKDRDQLLLERGK------QTRLASTITEQMSREAQELLQLFGVPFIVAPG 258
+++ K+R LL G+ R +T M+ + V IVAP
Sbjct: 90 KRRRDSRKQSKERAAELLRLGRIEEARSHMRRCVDVTHDMALRLIRECRSRNVDCIVAPY 149
Query: 259 EAEAQCASLELGNHTQGVITDDSDIWLFGARTV 291
EA+AQ A L + Q +IT+DSD+ LFGA+ +
Sbjct: 150 EADAQMAWLNRADVAQYIITEDSDLTLFGAKNI 182
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 138 (53.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 46/130 (35%), Positives = 60/130 (46%)
Query: 176 HLIGLYHRICKLLFFKIK--PVFVFDGGVPQLKKQTISTL---EKDRDQLLLERGKQTRL 230
HL L+ R L F K+ PVFV DG LK Q + D L +
Sbjct: 54 HLRTLFFRTLSL-FSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEAS 112
Query: 231 ASTITE----QMSREAQ---ELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDI 283
A + + + +R + ELL+ G+P + A GE EA CA L H IT DSD
Sbjct: 113 ADALVQPRNAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDA 172
Query: 284 WLFGARTVYK 293
+LFGA+TV K
Sbjct: 173 FLFGAKTVIK 182
>ASPGD|ASPL0000035217 [details] [associations]
symbol:AN3186 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00485
GO:GO:0003677 GO:GO:0006281 EMBL:BN001306 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000052 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K15339 RefSeq:XP_660790.1
ProteinModelPortal:Q5B8E4 EnsemblFungi:CADANIAT00009883
GeneID:2874333 KEGG:ani:AN3186.2 HOGENOM:HOG000198967
OrthoDB:EOG4QZBVF Uniprot:Q5B8E4
Length = 822
Score = 128 (50.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 40/128 (31%), Positives = 61/128 (47%)
Query: 168 AGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQ 227
AG N L L+ R+ K+L I P+FV+DG KD+ +RGK
Sbjct: 48 AGRGGKNPELRTLFFRLLKILALPIHPLFVYDG--------------KDKPPF--KRGKA 91
Query: 228 TRLASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFG 287
S + + ++ L+ LF P APGEAEA+C+ L++ V+++D D +FG
Sbjct: 92 VTGRSYGNAPIIQLSKILIDLFRFPRHDAPGEAEAECSRLQMAGVVDAVMSNDVDALMFG 151
Query: 288 ARTVYKNF 295
+ NF
Sbjct: 152 SGFTVMNF 159
>CGD|CAL0001028 [details] [associations]
symbol:orf19.652 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 CGD:CAL0001028 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15339 EMBL:AACQ01000173
RefSeq:XP_711995.1 ProteinModelPortal:Q59QM2 GeneID:3646389
KEGG:cal:CaO19.652 Uniprot:Q59QM2
Length = 684
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 41/117 (35%), Positives = 60/117 (51%)
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLA--STITEQMSR 240
+I L+ I + VFDG + LK ++ K+ + L+ E Q RLA S +E
Sbjct: 69 KILALVGLNISVIVVFDGILKPLKLKS-----KENEGLIYEDELQ-RLALISNYSEYNPF 122
Query: 241 EAQELLQLFG--VPFIVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNF 295
Q ++L + ++ APGE EAQCA L+ VI+ D D +FGAR V +NF
Sbjct: 123 VVQLKIELSNNKIEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFGARRVLRNF 179
>TAIR|locus:2194085 [details] [associations]
symbol:AT1G18090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746
UniGene:At.48205 UniGene:At.70260 EMBL:AY050420 EMBL:AY113038
IPI:IPI00541706 RefSeq:NP_564047.1 ProteinModelPortal:Q94A33
SMR:Q94A33 PaxDb:Q94A33 PRIDE:Q94A33 EnsemblPlants:AT1G18090.1
GeneID:838389 KEGG:ath:AT1G18090 TAIR:At1g18090
HOGENOM:HOG000131774 InParanoid:Q94A33 OMA:ETFETTE
ProtClustDB:CLSN2687850 Genevestigator:Q94A33 Uniprot:Q94A33
Length = 577
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 45/126 (35%), Positives = 63/126 (50%)
Query: 182 HRICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDR----DQLL--LERGK---QTRL-- 230
HR+ L ++I PV V DGG K T + R D + L+ G T L
Sbjct: 64 HRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMVKLKEGNVAAATELFQ 123
Query: 231 -ASTITEQMSREAQELLQLFGVPFIVAPGEAEAQCA---SLELGNH-TQGVITDDSDIWL 285
A ++T M+ + ++L+ V FIVAP EA+AQ A SLEL VIT+DSD+
Sbjct: 124 RAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSDLLA 183
Query: 286 FGARTV 291
+G + V
Sbjct: 184 YGCKAV 189
>WB|WBGene00009731 [details] [associations]
symbol:exo-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:Z93382
eggNOG:COG0258 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 PIR:T22235 RefSeq:NP_499770.1
ProteinModelPortal:O62245 SMR:O62245 IntAct:O62245 MINT:MINT-117279
STRING:O62245 PaxDb:O62245 EnsemblMetazoa:F45G2.3 GeneID:176765
KEGG:cel:CELE_F45G2.3 UCSC:F45G2.3 CTD:176765 WormBase:F45G2.3
HOGENOM:HOG000022038 InParanoid:O62245 OMA:IHMGEET NextBio:893914
Uniprot:O62245
Length = 639
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 47/155 (30%), Positives = 72/155 (46%)
Query: 152 DVSIWLHQLTKGTHD-LAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLKKQT- 209
DVS LH+ G D + G +++ + + +LL V VFDG KK T
Sbjct: 30 DVSCLLHRGLTGCMDKIHMGEETQSYVNYVNKYVKELLGMGCHVVMVFDGRPLPAKKGTN 89
Query: 210 -----ISTLEKDRDQLLLERG-----KQT-RLASTITEQMSREA-QELLQLFGVPFIVAP 257
+ K+ ++LL +G + T RLA++I+ + Q + V +VAP
Sbjct: 90 EERRELREKRKEHAEMLLAKGLEREARDTYRLATSISADIVENTIQYFRSMTNVDIVVAP 149
Query: 258 GEAEAQCASLELGNHTQGVITDDSDIWLFGARTVY 292
EA+AQ A L VIT+DSD+ +FG +Y
Sbjct: 150 YEADAQLAYLVQEKLVDAVITEDSDLIVFGCEMIY 184
>UNIPROTKB|E9PLG0 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853 SMART:SM00485
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 IPI:IPI00982888
ProteinModelPortal:E9PLG0 SMR:E9PLG0 Ensembl:ENST00000524465
ArrayExpress:E9PLG0 Bgee:E9PLG0 Uniprot:E9PLG0
Length = 126
Score = 92 (37.4 bits), Expect = 0.00066, P = 0.00066
Identities = 37/129 (28%), Positives = 59/129 (45%)
Query: 125 MPQNDQHSMLE-FRCNIVINKLLVDLIS-DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYH 182
M ND +LE + +I + L I+ D+S+W+ + T GSV HL L+
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQ--TVKKMMGSVMKPHLRNLFF 58
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDRDQLLLERGKQTRLASTITEQMSREA 242
RI L +K VFV +G P+LK IS + R + Q + + + + RE
Sbjct: 59 RISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQ-KTGRSHFKSVLREC 117
Query: 243 QELLQLFGV 251
+L+ G+
Sbjct: 118 LHMLECLGI 126
>UNIPROTKB|E9PM30 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853 SMART:SM00485
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 IPI:IPI00978436
ProteinModelPortal:E9PM30 SMR:E9PM30 Ensembl:ENST00000532257
ArrayExpress:E9PM30 Bgee:E9PM30 Uniprot:E9PM30
Length = 93
Score = 91 (37.1 bits), Expect = 0.00085, P = 0.00085
Identities = 32/95 (33%), Positives = 46/95 (48%)
Query: 125 MPQNDQHSMLE-FRCNIVINKLLVDLIS-DVSIWLHQLTKGTHDLAGGSVPNAHLIGLYH 182
M ND +LE + +I + L I+ D+S+W+ + T GSV HL L+
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQ--TVKKMMGSVMKPHLRNLFF 58
Query: 183 RICKLLFFKIKPVFVFDGGVPQLKKQTISTLEKDR 217
RI L +K VFV +G P+LK IS + R
Sbjct: 59 RISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSR 93
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 314 292 0.00090 115 3 11 22 0.37 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 610 (65 KB)
Total size of DFA: 207 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.65u 0.07s 23.72t Elapsed: 00:00:13
Total cpu time: 23.66u 0.07s 23.73t Elapsed: 00:00:13
Start: Thu Aug 15 11:30:42 2013 End: Thu Aug 15 11:30:55 2013