RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14294
(314 letters)
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 207
Score = 119 bits (298), Expect = 5e-33
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Query: 152 DVSIWLHQ------LTKGTHDLAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D L+Q L G+ + G++++ LL I P++VFDG P+L
Sbjct: 26 DGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKL 85
Query: 206 KKQTIS------------TLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPF 253
K++T E + + E K + S +T +M + LL L G+P+
Sbjct: 86 KEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPY 145
Query: 254 IVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFFDKKSHVLRYTAPDI 310
+ AP E EAQ + + V++ D D L+GA V +N K ++
Sbjct: 146 VEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKEMPELIELNEV 202
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 217
Score = 117 bits (294), Expect = 2e-32
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 19/178 (10%)
Query: 152 DVSIWLHQLTKGTHDLAGGSV------PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D L+Q G + +HL G+ +R+ ++ I+PVFVFDG P+
Sbjct: 25 DAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEF 84
Query: 206 KKQTI-----------STLEKDRDQLLLERGKQTRLASTITEQMSREAQELLQLFGVPFI 254
KK I + K + A + E + A+ LL G+PF+
Sbjct: 85 KKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFV 144
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF--DKKSHVLRYTAPDI 310
AP E EAQ A + + + D D LFG+ + +N K+ + D+
Sbjct: 145 DAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDV 202
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 216
Score = 111 bits (278), Expect = 4e-30
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 152 DVSIWLHQLTKGTHD-----LAGGSVPNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQLK 206
D S+ ++Q +HL+G+++R +++ IKPV+VFDG PQLK
Sbjct: 33 DASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLK 92
Query: 207 KQTISTLEKDRDQLLL------------ERGKQTRLASTITEQMSREAQELLQLFGVPFI 254
++ + R + E K T+ +T+Q + E + LL L G+P++
Sbjct: 93 SGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYL 152
Query: 255 VAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF---DKKSHVLRYTAPDI 310
AP EAEA CA+L T+D D FG+ + ++ KK + + I
Sbjct: 153 DAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 219
Score = 110 bits (275), Expect = 2e-29
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 152 DVSIWLHQLTKGTHDLAGGSV------PNAHLIGLYHRICKLLFFKIKPVFVFDGGVPQL 205
D ++Q G + +HL GL++R L+ IKPV+VFDG P+
Sbjct: 26 DALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEF 85
Query: 206 KKQTISTL--------EKDRDQL----LLERGKQTRLASTITEQMSREAQELLQLFGVPF 253
KK+ + EK R+ L + E K + A+ + E + +A++LL+L G+P
Sbjct: 86 KKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPI 145
Query: 254 IVAPGEAEAQCASLELGNHTQGVITDDSDIWLFGARTVYKNFF 296
+ AP E EAQ A + + D D LFGA + +N
Sbjct: 146 VQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLT 188
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
[TaxId: 274]}
Length = 180
Score = 26.4 bits (58), Expect = 3.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 233 TITEQMSREAQELLQLFGVPF 253
T + EA+ LL+L G PF
Sbjct: 158 VTTAETDEEARALLELLGFPF 178
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 179
Score = 26.1 bits (57), Expect = 4.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 233 TITEQMSREAQELLQLFGVPF 253
T EA+ELL L G+PF
Sbjct: 157 VTTANTDEEARELLALLGMPF 177
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 177
Score = 26.1 bits (57), Expect = 4.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 233 TITEQMSREAQELLQLFGVPF 253
T + EA+ LLQ G+PF
Sbjct: 155 VTTAKTDEEARALLQSMGLPF 175
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 25.7 bits (56), Expect = 6.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 233 TITEQMSREAQELLQLFGVPF 253
T T + E + LL F PF
Sbjct: 155 TTTAKSDEEGRALLAAFDFPF 175
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
factor large subunit DdrA {Klebsiella oxytoca [TaxId:
571]}
Length = 241
Score = 25.5 bits (56), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 237 QMSREAQELLQLFGVPFIVAPGEAEA 262
QM+ A+E+ Q + + EAEA
Sbjct: 207 QMAMIAREIEQKLNIDVQIGGAEAEA 232
>d1ex2a_ c.51.4.2 (A:) Maf protein {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 25.3 bits (54), Expect = 9.6
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 230 LASTITEQMSREAQELLQLFGVPFIVAPGEAE 261
LAS S +ELL L +P+ + E E
Sbjct: 7 LASQ-----SPRRKELLDLLQLPYSIIVSEVE 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,125,513
Number of extensions: 51513
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 15
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)