Query psy14295
Match_columns 750
No_of_seqs 298 out of 2228
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:10:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 3E-135 7E-140 1194.0 49.5 587 1-726 97-885 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 1E-131 2E-136 1167.4 50.3 560 1-701 127-818 (821)
3 cd01381 MYSc_type_VII Myosin m 100.0 1E-124 3E-129 1094.4 42.6 459 1-600 31-515 (671)
4 KOG0164|consensus 100.0 2E-123 3E-128 1021.0 38.6 447 1-584 39-514 (1001)
5 cd01380 MYSc_type_V Myosin mot 100.0 3E-123 5E-128 1088.1 42.0 464 1-601 31-522 (691)
6 cd01384 MYSc_type_XI Myosin mo 100.0 2E-122 3E-127 1076.0 42.5 461 1-601 32-520 (674)
7 cd01377 MYSc_type_II Myosin mo 100.0 2E-122 5E-127 1080.2 43.5 468 1-601 36-530 (693)
8 cd01385 MYSc_type_IX Myosin mo 100.0 2E-122 5E-127 1078.6 42.6 461 1-600 38-529 (692)
9 cd01383 MYSc_type_VIII Myosin 100.0 3E-122 7E-127 1073.7 41.4 453 1-600 39-515 (677)
10 cd01378 MYSc_type_I Myosin mot 100.0 4E-122 9E-127 1075.3 42.2 461 1-600 31-520 (674)
11 cd01387 MYSc_type_XV Myosin mo 100.0 6E-122 1E-126 1072.9 41.7 456 1-600 32-513 (677)
12 cd01382 MYSc_type_VI Myosin mo 100.0 5E-120 1E-124 1062.7 42.1 457 1-600 35-559 (717)
13 cd01379 MYSc_type_III Myosin m 100.0 1E-119 3E-124 1048.5 40.9 458 1-600 31-524 (653)
14 smart00242 MYSc Myosin. Large 100.0 2E-119 4E-124 1057.6 42.1 461 1-600 37-522 (677)
15 cd00124 MYSc Myosin motor doma 100.0 2E-118 4E-123 1051.4 43.1 459 1-600 31-515 (679)
16 KOG0162|consensus 100.0 2E-117 4E-122 972.9 34.5 463 1-605 49-542 (1106)
17 PF00063 Myosin_head: Myosin h 100.0 4E-116 1E-120 1039.8 36.5 468 1-604 30-526 (689)
18 cd01386 MYSc_type_XVIII Myosin 100.0 2E-115 5E-120 1025.1 41.5 466 1-600 31-555 (767)
19 KOG0163|consensus 100.0 3E-113 7E-118 939.6 46.0 441 1-584 88-592 (1259)
20 KOG0161|consensus 100.0 2E-113 5E-118 1053.3 42.0 572 1-709 113-825 (1930)
21 KOG0160|consensus 100.0 3E-111 6E-116 973.7 40.6 556 1-700 39-758 (862)
22 KOG4229|consensus 100.0 1.2E-87 2.5E-92 794.7 15.6 449 1-590 92-570 (1062)
23 COG5022 Myosin heavy chain [Cy 100.0 9.6E-39 2.1E-43 378.4 31.6 209 353-584 158-444 (1463)
24 KOG0164|consensus 100.0 1.4E-36 3.1E-41 335.5 23.1 225 353-584 100-391 (1001)
25 KOG0163|consensus 100.0 2.4E-33 5.1E-38 310.2 32.0 224 353-584 150-467 (1259)
26 PTZ00014 myosin-A; Provisional 100.0 1.3E-33 2.7E-38 334.6 27.9 222 353-584 189-478 (821)
27 KOG0160|consensus 100.0 8.4E-33 1.8E-37 321.5 23.8 223 353-584 100-384 (862)
28 cd01381 MYSc_type_VII Myosin m 100.0 4.3E-32 9.3E-37 317.7 17.8 241 353-604 92-399 (671)
29 cd01380 MYSc_type_V Myosin mot 100.0 1.1E-31 2.5E-36 315.4 17.6 240 353-603 92-404 (691)
30 cd01383 MYSc_type_VIII Myosin 100.0 4.3E-31 9.3E-36 309.2 18.3 239 353-603 98-401 (677)
31 cd01377 MYSc_type_II Myosin mo 100.0 5.7E-31 1.2E-35 309.6 17.7 239 353-603 97-410 (693)
32 KOG0162|consensus 100.0 1.8E-31 3.9E-36 295.2 12.1 228 353-588 110-403 (1106)
33 cd01385 MYSc_type_IX Myosin mo 100.0 9.3E-31 2E-35 307.4 18.3 240 353-603 100-413 (692)
34 cd01384 MYSc_type_XI Myosin mo 100.0 5.4E-30 1.2E-34 299.9 17.9 239 353-603 94-403 (674)
35 cd01378 MYSc_type_I Myosin mot 100.0 5.7E-30 1.2E-34 300.4 17.8 244 353-603 92-402 (674)
36 cd01379 MYSc_type_III Myosin m 100.0 9.6E-30 2.1E-34 296.9 18.0 242 353-604 92-410 (653)
37 cd01382 MYSc_type_VI Myosin mo 100.0 1.5E-29 3.2E-34 298.4 17.6 244 353-604 97-434 (717)
38 cd01386 MYSc_type_XVIII Myosin 100.0 1.9E-29 4.1E-34 298.2 17.6 245 353-604 92-416 (767)
39 cd01387 MYSc_type_XV Myosin mo 100.0 3.9E-29 8.4E-34 293.2 18.3 237 353-603 93-397 (677)
40 cd00124 MYSc Myosin motor doma 100.0 4.1E-29 9E-34 294.8 17.2 239 353-603 92-398 (679)
41 smart00242 MYSc Myosin. Large 100.0 5E-29 1.1E-33 293.5 17.8 239 353-603 98-405 (677)
42 KOG0161|consensus 100.0 2.6E-29 5.6E-34 311.7 12.3 222 353-584 174-464 (1930)
43 PF00063 Myosin_head: Myosin h 99.9 3.9E-27 8.4E-32 280.2 13.5 240 353-603 91-400 (689)
44 KOG4229|consensus 99.8 2.2E-20 4.8E-25 223.2 8.7 260 353-622 154-482 (1062)
45 KOG0520|consensus 98.4 3.3E-07 7.2E-12 108.9 7.9 124 591-714 810-945 (975)
46 cd01363 Motor_domain Myosin an 98.4 8E-07 1.7E-11 89.4 7.2 89 39-157 8-97 (186)
47 KOG0520|consensus 97.9 2.7E-05 5.8E-10 93.1 8.4 110 615-724 811-932 (975)
48 KOG2128|consensus 97.4 0.0029 6.3E-08 78.0 15.5 114 593-706 509-645 (1401)
49 PF00612 IQ: IQ calmodulin-bin 97.3 0.00036 7.8E-09 44.7 3.6 19 684-702 2-20 (21)
50 PF00612 IQ: IQ calmodulin-bin 97.1 0.0005 1.1E-08 44.0 3.1 20 661-680 2-21 (21)
51 smart00015 IQ Short calmodulin 96.2 0.0045 9.8E-08 41.8 2.7 19 661-679 4-22 (26)
52 KOG2128|consensus 96.0 0.09 2E-06 65.5 14.6 88 596-683 540-645 (1401)
53 smart00015 IQ Short calmodulin 95.7 0.01 2.2E-07 40.0 2.8 22 682-703 2-23 (26)
54 KOG0925|consensus 94.9 0.022 4.8E-07 63.8 3.8 66 8-87 22-87 (699)
55 KOG0922|consensus 89.1 0.56 1.2E-05 55.0 5.5 124 39-185 52-180 (674)
56 KOG0924|consensus 88.4 0.53 1.2E-05 55.1 4.6 123 39-184 357-484 (1042)
57 KOG4427|consensus 87.7 7 0.00015 46.5 12.9 38 655-698 24-62 (1096)
58 PF13207 AAA_17: AAA domain; P 83.2 0.4 8.7E-06 43.9 0.3 23 58-87 1-23 (121)
59 PF13401 AAA_22: AAA domain; P 80.9 0.48 1E-05 43.8 -0.1 27 54-87 2-28 (131)
60 KOG0165|consensus 80.3 16 0.00034 43.7 11.6 162 529-705 477-671 (1023)
61 cd01363 Motor_domain Myosin an 77.6 1.8 3.9E-05 43.5 2.8 64 353-420 30-94 (186)
62 COG0444 DppD ABC-type dipeptid 77.5 0.91 2E-05 49.3 0.7 27 54-87 29-55 (316)
63 cd00009 AAA The AAA+ (ATPases 77.4 1.4 3.1E-05 40.4 1.9 28 53-87 16-43 (151)
64 PF13191 AAA_16: AAA ATPase do 77.2 0.77 1.7E-05 45.0 0.1 30 51-87 19-48 (185)
65 TIGR02322 phosphon_PhnN phosph 76.2 1 2.2E-05 44.5 0.6 15 57-75 2-16 (179)
66 TIGR03015 pepcterm_ATPase puta 74.4 2.9 6.2E-05 44.0 3.5 26 55-87 42-67 (269)
67 PF13238 AAA_18: AAA domain; P 73.6 1.1 2.4E-05 41.0 0.1 22 59-87 1-22 (129)
68 smart00382 AAA ATPases associa 73.4 1.4 2.9E-05 40.0 0.6 25 56-87 2-26 (148)
69 cd00820 PEPCK_HprK Phosphoenol 72.9 1.7 3.6E-05 40.0 1.1 17 55-75 14-30 (107)
70 cd01131 PilT Pilus retraction 71.3 1.4 3.1E-05 44.6 0.3 23 58-87 3-25 (198)
71 cd01918 HprK_C HprK/P, the bif 71.3 1.6 3.5E-05 42.4 0.7 23 56-85 14-36 (149)
72 PRK00300 gmk guanylate kinase; 71.2 1.7 3.8E-05 43.8 0.9 26 55-87 4-29 (205)
73 cd02019 NK Nucleoside/nucleoti 70.9 1.5 3.3E-05 36.5 0.3 21 59-86 2-22 (69)
74 PF00004 AAA: ATPase family as 70.6 1.5 3.3E-05 40.3 0.2 22 59-87 1-22 (132)
75 KOG0923|consensus 70.4 3.3 7.2E-05 48.8 2.9 43 53-112 277-320 (902)
76 COG2204 AtoC Response regulato 70.4 5.8 0.00013 45.6 4.9 71 53-148 161-233 (464)
77 PRK06696 uridine kinase; Valid 69.7 2.7 5.8E-05 43.4 1.9 28 53-87 19-46 (223)
78 PRK05480 uridine/cytidine kina 68.1 2.3 5E-05 43.2 1.0 26 55-87 5-30 (209)
79 PRK13833 conjugal transfer pro 67.7 2.8 6E-05 46.1 1.6 31 48-87 138-168 (323)
80 cd01129 PulE-GspE PulE/GspE Th 67.4 3.2 6.9E-05 44.2 1.9 23 58-87 82-104 (264)
81 COG4608 AppF ABC-type oligopep 67.2 2.3 5E-05 45.2 0.8 27 54-87 37-63 (268)
82 cd02023 UMPK Uridine monophosp 66.9 2 4.4E-05 43.2 0.3 20 59-85 2-21 (198)
83 PRK05541 adenylylsulfate kinas 66.7 2.3 5E-05 41.9 0.6 27 54-87 5-31 (176)
84 PRK00131 aroK shikimate kinase 66.4 2.5 5.5E-05 40.9 0.9 26 55-87 3-28 (175)
85 PRK08233 hypothetical protein; 66.0 2.1 4.6E-05 42.0 0.2 24 57-87 4-27 (182)
86 TIGR02173 cyt_kin_arch cytidyl 65.9 2.2 4.7E-05 41.5 0.3 23 58-87 2-24 (171)
87 PRK11131 ATP-dependent RNA hel 65.8 5.7 0.00012 51.0 4.0 18 54-75 87-104 (1294)
88 PRK06762 hypothetical protein; 65.6 2.6 5.6E-05 41.0 0.7 24 57-87 3-26 (166)
89 PF00485 PRK: Phosphoribulokin 65.5 2.1 4.5E-05 43.2 0.1 22 59-87 2-23 (194)
90 TIGR00235 udk uridine kinase. 65.4 2.6 5.7E-05 42.8 0.8 26 55-87 5-30 (207)
91 KOG0942|consensus 65.3 13 0.00028 45.4 6.4 27 657-683 26-52 (1001)
92 TIGR03420 DnaA_homol_Hda DnaA 65.1 4 8.7E-05 41.6 2.1 35 46-87 28-62 (226)
93 PRK14737 gmk guanylate kinase; 64.9 3.7 8E-05 41.4 1.7 16 56-75 4-19 (186)
94 PRK06547 hypothetical protein; 64.9 4.2 9.1E-05 40.5 2.1 27 53-86 12-38 (172)
95 PRK10078 ribose 1,5-bisphospho 64.8 2.5 5.4E-05 42.2 0.5 15 57-75 3-17 (186)
96 COG1125 OpuBA ABC-type proline 64.7 2.5 5.4E-05 44.7 0.4 18 67-87 34-51 (309)
97 cd01130 VirB11-like_ATPase Typ 64.6 2.6 5.6E-05 42.2 0.6 25 56-87 25-49 (186)
98 COG0194 Gmk Guanylate kinase [ 64.6 2.4 5.2E-05 42.7 0.3 23 56-85 4-26 (191)
99 cd02020 CMPK Cytidine monophos 64.4 2.5 5.4E-05 39.8 0.4 22 59-87 2-23 (147)
100 TIGR00150 HI0065_YjeE ATPase, 63.6 3 6.6E-05 39.8 0.8 27 54-87 20-46 (133)
101 COG4172 ABC-type uncharacteriz 63.2 3.3 7.3E-05 46.4 1.1 28 53-87 310-337 (534)
102 KOG4427|consensus 62.5 22 0.00048 42.6 7.5 29 678-706 24-53 (1096)
103 PRK09270 nucleoside triphospha 62.0 5 0.00011 41.6 2.2 28 53-87 30-57 (229)
104 PRK07261 topology modulation p 62.0 3.1 6.6E-05 41.2 0.5 20 58-84 2-21 (171)
105 cd00227 CPT Chloramphenicol (C 61.9 3.3 7.2E-05 40.9 0.8 23 56-85 2-24 (175)
106 PF13555 AAA_29: P-loop contai 61.8 3.8 8.3E-05 33.8 1.0 14 58-75 25-38 (62)
107 PRK08118 topology modulation p 61.6 3.2 6.9E-05 41.0 0.6 24 57-87 2-25 (167)
108 cd00071 GMPK Guanosine monopho 61.6 2.9 6.2E-05 39.9 0.2 22 59-87 2-23 (137)
109 PTZ00301 uridine kinase; Provi 61.5 2.9 6.3E-05 43.0 0.3 22 59-87 6-27 (210)
110 TIGR03263 guanyl_kin guanylate 61.2 3.2 6.9E-05 40.9 0.5 24 57-87 2-25 (180)
111 TIGR02928 orc1/cdc6 family rep 60.8 4.6 0.0001 44.6 1.7 29 52-87 36-64 (365)
112 cd02028 UMPK_like Uridine mono 60.6 3.1 6.8E-05 41.5 0.3 22 59-87 2-23 (179)
113 TIGR02782 TrbB_P P-type conjug 60.4 3.4 7.3E-05 44.9 0.6 25 56-87 132-156 (299)
114 COG1643 HrpA HrpA-like helicas 60.4 7.1 0.00015 48.1 3.3 119 50-188 59-182 (845)
115 TIGR01313 therm_gnt_kin carboh 59.8 2.7 5.9E-05 40.7 -0.3 22 59-87 1-22 (163)
116 PF12846 AAA_10: AAA-like doma 59.5 3.6 7.8E-05 43.5 0.6 24 57-87 2-25 (304)
117 PF00437 T2SE: Type II/IV secr 59.5 3.3 7.1E-05 43.9 0.3 26 55-87 126-151 (270)
118 TIGR01420 pilT_fam pilus retra 59.4 3.3 7.3E-05 45.8 0.3 25 56-87 122-146 (343)
119 cd02025 PanK Pantothenate kina 59.3 3.3 7.1E-05 42.9 0.2 18 67-87 6-23 (220)
120 KOG0920|consensus 59.3 5.4 0.00012 49.3 2.1 113 54-184 186-303 (924)
121 PF03668 ATP_bind_2: P-loop AT 59.1 3.6 7.7E-05 44.2 0.4 15 57-75 2-16 (284)
122 PF00005 ABC_tran: ABC transpo 58.6 4.9 0.00011 37.5 1.3 17 55-75 10-26 (137)
123 TIGR02524 dot_icm_DotB Dot/Icm 58.5 3.6 7.7E-05 45.9 0.3 26 55-87 133-158 (358)
124 PF07724 AAA_2: AAA domain (Cd 58.4 3.8 8.2E-05 40.8 0.5 21 64-87 7-27 (171)
125 COG1123 ATPase components of v 58.2 4 8.7E-05 47.6 0.7 26 55-87 34-59 (539)
126 PRK05342 clpX ATP-dependent pr 58.1 5.8 0.00013 45.1 2.0 63 18-87 59-132 (412)
127 PF03193 DUF258: Protein of un 57.9 5.6 0.00012 39.3 1.5 32 45-87 24-55 (161)
128 PRK00889 adenylylsulfate kinas 57.6 4.8 0.0001 39.6 1.0 26 55-87 3-28 (175)
129 PRK14738 gmk guanylate kinase; 57.5 4.5 9.7E-05 41.3 0.9 18 54-75 11-28 (206)
130 PF05729 NACHT: NACHT domain 57.5 4.1 8.9E-05 38.8 0.5 23 58-87 2-24 (166)
131 COG1124 DppF ABC-type dipeptid 57.5 4.4 9.5E-05 42.5 0.8 27 54-87 31-57 (252)
132 TIGR02525 plasmid_TraJ plasmid 57.2 3.9 8.5E-05 45.8 0.4 24 57-87 150-173 (372)
133 PF01583 APS_kinase: Adenylyls 57.2 4.5 9.7E-05 39.7 0.7 23 58-87 4-26 (156)
134 COG0572 Udk Uridine kinase [Nu 57.2 4 8.6E-05 42.2 0.4 27 56-87 6-32 (218)
135 KOG0165|consensus 57.1 53 0.0011 39.6 9.3 103 603-705 182-297 (1023)
136 PRK06217 hypothetical protein; 56.7 3.9 8.5E-05 40.7 0.3 22 59-87 4-25 (183)
137 cd03270 ABC_UvrA_I The excisio 56.3 5.5 0.00012 41.2 1.3 18 54-75 19-36 (226)
138 PRK13851 type IV secretion sys 56.3 4.1 8.8E-05 45.2 0.3 26 55-87 161-186 (344)
139 PF13245 AAA_19: Part of AAA d 56.0 6.1 0.00013 33.8 1.3 26 55-87 9-34 (76)
140 cd02024 NRK1 Nicotinamide ribo 55.4 4.2 9.1E-05 41.1 0.2 22 59-87 2-23 (187)
141 COG1102 Cmk Cytidylate kinase 55.3 4.8 0.0001 39.8 0.6 22 59-87 3-24 (179)
142 COG1126 GlnQ ABC-type polar am 55.2 6.7 0.00015 40.6 1.6 17 55-75 27-43 (240)
143 TIGR02868 CydC thiol reductant 55.1 4.8 0.0001 47.1 0.7 27 54-87 359-385 (529)
144 COG1136 SalX ABC-type antimicr 54.6 5.3 0.00011 41.6 0.8 17 55-75 30-46 (226)
145 PRK08084 DNA replication initi 54.5 9.7 0.00021 39.7 2.8 27 45-75 34-60 (235)
146 PF13671 AAA_33: AAA domain; P 54.4 4.1 8.9E-05 38.2 -0.0 22 59-87 2-23 (143)
147 PRK13900 type IV secretion sys 54.3 4.5 9.8E-05 44.6 0.3 25 56-87 160-184 (332)
148 cd02027 APSK Adenosine 5'-phos 54.2 4.6 0.0001 38.9 0.3 22 59-87 2-23 (149)
149 PRK12402 replication factor C 54.2 8 0.00017 42.0 2.2 30 51-87 31-60 (337)
150 COG3604 FhlA Transcriptional r 54.1 14 0.00031 42.5 4.2 77 46-146 231-313 (550)
151 PRK00411 cdc6 cell division co 53.9 7.1 0.00015 43.6 1.8 30 51-87 50-79 (394)
152 PRK05057 aroK shikimate kinase 53.8 5.4 0.00012 39.5 0.7 24 56-86 4-27 (172)
153 PRK03846 adenylylsulfate kinas 53.3 6.1 0.00013 39.9 1.0 27 54-87 22-48 (198)
154 PF00910 RNA_helicase: RNA hel 53.3 4.2 9.1E-05 36.9 -0.1 22 59-87 1-22 (107)
155 COG1123 ATPase components of v 53.1 4.1 9E-05 47.5 -0.3 18 67-87 324-341 (539)
156 COG4172 ABC-type uncharacteriz 52.9 5.8 0.00013 44.5 0.8 21 354-374 320-340 (534)
157 TIGR01360 aden_kin_iso1 adenyl 52.9 5.2 0.00011 39.4 0.4 23 58-87 5-27 (188)
158 PRK15093 antimicrobial peptide 52.9 5.6 0.00012 43.7 0.7 18 54-75 31-48 (330)
159 cd00464 SK Shikimate kinase (S 52.5 5 0.00011 38.1 0.2 23 58-87 1-23 (154)
160 PRK14961 DNA polymerase III su 52.3 11 0.00023 42.1 2.8 53 24-87 7-62 (363)
161 COG0563 Adk Adenylate kinase a 52.3 5.4 0.00012 39.9 0.5 22 59-87 3-24 (178)
162 PRK11308 dppF dipeptide transp 52.0 5.8 0.00013 43.6 0.7 25 54-85 39-63 (327)
163 TIGR02533 type_II_gspE general 52.0 8.1 0.00017 44.9 1.9 23 58-87 244-266 (486)
164 PRK04182 cytidylate kinase; Pr 52.0 5.2 0.00011 39.1 0.3 23 58-87 2-24 (180)
165 PRK13764 ATPase; Provisional 51.6 7.5 0.00016 46.2 1.5 25 56-87 257-281 (602)
166 PF06309 Torsin: Torsin; Inte 51.5 8.8 0.00019 36.3 1.7 29 54-87 49-77 (127)
167 COG1660 Predicted P-loop-conta 51.5 5.2 0.00011 42.3 0.2 14 58-75 3-16 (286)
168 PRK09473 oppD oligopeptide tra 51.3 5.7 0.00012 43.7 0.5 18 54-75 40-57 (330)
169 PTZ00112 origin recognition co 51.3 9.2 0.0002 47.2 2.2 28 53-87 778-805 (1164)
170 PF03266 NTPase_1: NTPase; In 51.3 5.3 0.00011 39.6 0.2 22 59-87 2-23 (168)
171 cd01120 RecA-like_NTPases RecA 51.2 5.6 0.00012 37.6 0.3 22 59-87 2-23 (165)
172 PRK09825 idnK D-gluconate kina 50.5 6.6 0.00014 39.1 0.7 24 57-87 4-27 (176)
173 cd02021 GntK Gluconate kinase 50.5 5.6 0.00012 37.9 0.2 21 59-86 2-22 (150)
174 COG4778 PhnL ABC-type phosphon 50.3 8 0.00017 38.7 1.2 18 54-75 35-52 (235)
175 PF07475 Hpr_kinase_C: HPr Ser 50.1 6.2 0.00013 39.3 0.4 22 56-84 18-39 (171)
176 PRK11022 dppD dipeptide transp 50.1 6.4 0.00014 43.2 0.6 27 54-87 31-57 (326)
177 PRK14527 adenylate kinase; Pro 49.8 7 0.00015 39.1 0.8 26 55-87 5-30 (191)
178 PRK15079 oligopeptide ABC tran 49.4 6.7 0.00014 43.2 0.6 26 54-86 45-70 (331)
179 TIGR00554 panK_bact pantothena 48.9 9.7 0.00021 41.2 1.8 27 54-87 60-86 (290)
180 cd04155 Arl3 Arl3 subfamily. 48.7 12 0.00026 36.0 2.3 24 48-75 6-29 (173)
181 PRK10751 molybdopterin-guanine 48.4 6.2 0.00014 39.4 0.2 18 67-87 13-30 (173)
182 TIGR02788 VirB11 P-type DNA tr 48.3 6.9 0.00015 42.6 0.5 17 55-75 143-159 (308)
183 TIGR02673 FtsE cell division A 48.3 7.3 0.00016 39.6 0.7 18 54-75 26-43 (214)
184 COG3842 PotA ABC-type spermidi 48.1 4.7 0.0001 44.7 -0.8 11 65-75 36-46 (352)
185 PF00270 DEAD: DEAD/DEAH box h 48.0 13 0.00028 35.6 2.4 24 45-75 6-29 (169)
186 PRK15177 Vi polysaccharide exp 47.9 7.7 0.00017 39.7 0.8 18 54-75 11-28 (213)
187 PRK08903 DnaA regulatory inact 47.8 12 0.00025 38.5 2.1 25 54-85 40-64 (227)
188 TIGR02902 spore_lonB ATP-depen 47.7 9.6 0.00021 44.8 1.6 30 51-87 81-110 (531)
189 TIGR01166 cbiO cobalt transpor 47.7 7.7 0.00017 38.7 0.7 18 54-75 16-33 (190)
190 PLN02318 phosphoribulokinase/u 47.5 9.8 0.00021 45.1 1.6 43 39-87 47-89 (656)
191 cd03293 ABC_NrtD_SsuB_transpor 47.4 7.4 0.00016 39.8 0.6 18 54-75 28-45 (220)
192 COG1493 HprK Serine kinase of 47.1 8 0.00017 41.7 0.8 15 57-75 146-160 (308)
193 PRK11176 lipid transporter ATP 47.0 7.9 0.00017 45.8 0.8 27 54-87 367-393 (582)
194 PRK06645 DNA polymerase III su 47.0 8.8 0.00019 44.8 1.1 31 50-87 37-67 (507)
195 KOG0056|consensus 47.0 8.6 0.00019 44.1 1.0 27 54-87 562-588 (790)
196 TIGR01359 UMP_CMP_kin_fam UMP- 46.8 7.2 0.00016 38.4 0.3 22 59-87 2-23 (183)
197 PRK13894 conjugal transfer ATP 46.8 7.5 0.00016 42.7 0.5 26 55-87 147-172 (319)
198 PRK12377 putative replication 46.7 11 0.00023 40.0 1.6 26 55-87 100-125 (248)
199 cd03292 ABC_FtsE_transporter F 46.7 8 0.00017 39.2 0.7 18 54-75 25-42 (214)
200 PF12774 AAA_6: Hydrolytic ATP 46.6 12 0.00026 39.1 2.0 39 42-87 17-56 (231)
201 COG2805 PilT Tfp pilus assembl 46.6 7.6 0.00017 42.1 0.5 26 55-87 124-149 (353)
202 PRK09111 DNA polymerase III su 46.6 7.1 0.00015 46.5 0.3 29 52-87 42-70 (598)
203 COG2274 SunT ABC-type bacterio 46.5 8.1 0.00017 47.0 0.7 27 54-87 497-523 (709)
204 TIGR00382 clpX endopeptidase C 46.5 12 0.00026 42.6 2.1 24 57-87 117-140 (413)
205 cd03225 ABC_cobalt_CbiO_domain 46.4 8.3 0.00018 39.1 0.7 18 54-75 25-42 (211)
206 PF07728 AAA_5: AAA domain (dy 46.3 6.8 0.00015 36.8 0.1 13 59-75 2-14 (139)
207 KOG0942|consensus 46.2 49 0.0011 40.7 7.0 30 631-660 23-52 (1001)
208 PRK04040 adenylate kinase; Pro 46.2 8.4 0.00018 38.8 0.7 24 57-87 3-26 (188)
209 TIGR00960 3a0501s02 Type II (G 46.0 8.4 0.00018 39.2 0.7 18 54-75 27-44 (216)
210 TIGR03238 dnd_assoc_3 dnd syst 45.8 15 0.00032 42.5 2.6 18 54-75 30-47 (504)
211 PF08283 Gemini_AL1_M: Geminiv 45.8 16 0.00035 33.5 2.4 19 53-75 87-105 (106)
212 cd03258 ABC_MetN_methionine_tr 45.6 8.6 0.00019 39.7 0.7 18 54-75 29-46 (233)
213 cd03259 ABC_Carb_Solutes_like 45.6 8.6 0.00019 39.0 0.7 18 54-75 24-41 (213)
214 PRK05201 hslU ATP-dependent pr 45.3 14 0.00031 42.0 2.4 61 20-87 5-74 (443)
215 PF04665 Pox_A32: Poxvirus A32 45.3 8 0.00017 40.7 0.4 18 67-87 20-37 (241)
216 PRK08154 anaerobic benzoate ca 45.2 11 0.00023 41.2 1.4 47 34-87 107-157 (309)
217 PHA02530 pseT polynucleotide k 45.0 8.7 0.00019 41.2 0.7 24 57-87 3-26 (300)
218 cd03255 ABC_MJ0796_Lo1CDE_FtsE 45.0 8.8 0.00019 39.1 0.7 18 54-75 28-45 (218)
219 COG4107 PhnK ABC-type phosphon 44.8 8.4 0.00018 38.6 0.5 9 67-75 39-47 (258)
220 cd03260 ABC_PstB_phosphate_tra 44.5 9.4 0.0002 39.2 0.8 18 54-75 24-41 (227)
221 cd03230 ABC_DR_subfamily_A Thi 44.5 12 0.00026 36.8 1.5 18 54-75 24-41 (173)
222 PLN03025 replication factor C 44.5 11 0.00024 41.0 1.5 34 47-87 25-58 (319)
223 cd00268 DEADc DEAD-box helicas 44.5 15 0.00033 36.6 2.3 31 38-75 21-51 (203)
224 PHA02544 44 clamp loader, smal 44.4 11 0.00023 40.8 1.3 28 52-86 39-66 (316)
225 PRK07667 uridine kinase; Provi 44.3 8.2 0.00018 38.9 0.3 22 59-87 20-41 (193)
226 TIGR00678 holB DNA polymerase 44.2 12 0.00026 37.3 1.4 29 52-87 10-38 (188)
227 PF14532 Sigma54_activ_2: Sigm 44.2 9.5 0.0002 36.1 0.7 18 54-75 19-36 (138)
228 cd03224 ABC_TM1139_LivF_branch 44.2 12 0.00025 38.3 1.4 18 54-75 24-41 (222)
229 COG0529 CysC Adenylylsulfate k 44.1 17 0.00037 36.5 2.5 11 65-75 28-38 (197)
230 PF01637 Arch_ATPase: Archaeal 44.0 10 0.00022 38.3 0.9 32 49-87 13-44 (234)
231 PRK08356 hypothetical protein; 44.0 8.1 0.00018 38.9 0.2 19 58-83 7-25 (195)
232 PF06414 Zeta_toxin: Zeta toxi 44.0 11 0.00023 38.2 1.0 28 52-86 11-38 (199)
233 PRK06761 hypothetical protein; 43.9 8.4 0.00018 41.5 0.3 24 57-87 4-27 (282)
234 COG0630 VirB11 Type IV secreto 43.9 12 0.00027 40.8 1.7 37 43-87 131-167 (312)
235 PRK11174 cysteine/glutathione 43.8 9.2 0.0002 45.3 0.7 26 54-86 374-399 (588)
236 cd03235 ABC_Metallic_Cations A 43.8 9.3 0.0002 38.8 0.6 18 54-75 23-40 (213)
237 PRK00440 rfc replication facto 43.8 14 0.0003 39.8 2.0 34 47-87 29-62 (319)
238 cd03268 ABC_BcrA_bacitracin_re 43.7 12 0.00025 37.9 1.3 18 54-75 24-41 (208)
239 PRK05416 glmZ(sRNA)-inactivati 43.7 8.8 0.00019 41.5 0.4 16 56-75 6-21 (288)
240 cd03218 ABC_YhbG The ABC trans 43.6 12 0.00027 38.4 1.5 18 54-75 24-41 (232)
241 PRK14531 adenylate kinase; Pro 43.6 9.4 0.0002 38.0 0.6 24 57-87 3-26 (183)
242 PRK05428 HPr kinase/phosphoryl 43.5 9 0.0002 41.8 0.5 23 57-86 147-169 (308)
243 cd03296 ABC_CysA_sulfate_impor 43.5 9.8 0.00021 39.5 0.7 18 54-75 26-43 (239)
244 TIGR02858 spore_III_AA stage I 43.4 14 0.0003 39.6 1.9 32 40-75 95-126 (270)
245 PRK03839 putative kinase; Prov 43.4 8.6 0.00019 38.0 0.3 22 59-87 3-24 (180)
246 COG3638 ABC-type phosphate/pho 43.4 13 0.00028 39.0 1.6 22 55-87 29-50 (258)
247 PRK10436 hypothetical protein; 43.4 9 0.0002 44.2 0.5 26 55-87 216-242 (462)
248 PF00158 Sigma54_activat: Sigm 43.1 14 0.0003 36.6 1.7 23 54-83 20-42 (168)
249 PF02367 UPF0079: Uncharacteri 43.1 10 0.00022 35.8 0.6 27 54-87 13-39 (123)
250 KOG0245|consensus 43.0 1.3E+02 0.0028 37.8 9.8 65 4-75 32-103 (1221)
251 TIGR03608 L_ocin_972_ABC putat 43.0 9.8 0.00021 38.3 0.6 18 54-75 22-39 (206)
252 PRK08727 hypothetical protein; 42.8 15 0.00032 38.3 2.0 19 53-75 38-56 (233)
253 COG4619 ABC-type uncharacteriz 42.8 12 0.00027 37.4 1.2 17 55-75 28-44 (223)
254 TIGR02315 ABC_phnC phosphonate 42.7 10 0.00022 39.3 0.7 18 54-75 26-43 (243)
255 TIGR00455 apsK adenylylsulfate 42.7 9.1 0.0002 38.0 0.3 26 55-87 17-42 (184)
256 cd02029 PRK_like Phosphoribulo 42.5 9 0.0002 41.0 0.3 22 59-87 2-23 (277)
257 cd03229 ABC_Class3 This class 42.5 10 0.00023 37.4 0.7 18 54-75 24-41 (178)
258 PF00448 SRP54: SRP54-type pro 42.4 9.8 0.00021 38.7 0.5 24 57-87 2-25 (196)
259 COG3829 RocR Transcriptional r 42.4 25 0.00055 41.0 3.8 56 53-133 265-321 (560)
260 PF13479 AAA_24: AAA domain 42.4 12 0.00025 38.4 1.1 17 55-75 2-18 (213)
261 PRK05537 bifunctional sulfate 42.4 11 0.00023 44.8 0.9 44 35-87 373-416 (568)
262 PRK14528 adenylate kinase; Pro 42.3 10 0.00022 38.0 0.6 24 57-87 2-25 (186)
263 cd03266 ABC_NatA_sodium_export 42.2 13 0.00028 37.8 1.4 18 54-75 29-46 (218)
264 cd03219 ABC_Mj1267_LivG_branch 42.2 10 0.00022 39.1 0.7 18 54-75 24-41 (236)
265 PF00625 Guanylate_kin: Guanyl 42.1 10 0.00022 37.6 0.6 22 57-85 3-24 (183)
266 cd03256 ABC_PhnC_transporter A 42.1 10 0.00023 39.1 0.7 18 54-75 25-42 (241)
267 TIGR03499 FlhF flagellar biosy 42.1 11 0.00025 40.4 1.0 25 56-87 194-218 (282)
268 KOG3354|consensus 41.8 11 0.00024 37.0 0.8 24 57-87 13-36 (191)
269 PRK06893 DNA replication initi 41.8 20 0.00044 37.1 2.8 19 53-75 36-54 (229)
270 cd03262 ABC_HisP_GlnQ_permease 41.8 11 0.00023 38.2 0.7 18 54-75 24-41 (213)
271 PRK13342 recombination factor 41.7 14 0.0003 41.9 1.7 36 45-87 25-60 (413)
272 PRK00698 tmk thymidylate kinas 41.7 11 0.00025 37.6 0.9 24 57-87 4-27 (205)
273 KOG2002|consensus 41.6 4.5E+02 0.0098 33.1 14.1 17 568-584 714-730 (1018)
274 TIGR03574 selen_PSTK L-seryl-t 41.5 9.5 0.00021 40.0 0.3 22 59-87 2-23 (249)
275 COG1132 MdlB ABC-type multidru 41.4 11 0.00023 44.6 0.7 27 54-87 353-379 (567)
276 PRK09087 hypothetical protein; 41.4 20 0.00043 37.3 2.6 17 55-75 43-59 (226)
277 cd03297 ABC_ModC_molybdenum_tr 41.2 11 0.00023 38.5 0.6 17 54-75 22-38 (214)
278 TIGR03864 PQQ_ABC_ATP ABC tran 41.2 11 0.00024 39.0 0.7 18 54-75 25-42 (236)
279 PF00308 Bac_DnaA: Bacterial d 41.2 21 0.00045 36.9 2.7 27 45-75 21-49 (219)
280 smart00072 GuKc Guanylate kina 41.0 9.9 0.00021 37.9 0.3 14 58-75 4-17 (184)
281 PRK10908 cell division protein 40.9 14 0.0003 37.8 1.4 18 54-75 26-43 (222)
282 cd03226 ABC_cobalt_CbiO_domain 40.9 11 0.00024 38.0 0.7 18 54-75 24-41 (205)
283 PF08477 Miro: Miro-like prote 40.9 13 0.00028 33.5 1.0 18 59-87 2-19 (119)
284 PRK09112 DNA polymerase III su 40.9 17 0.00036 40.5 2.1 37 44-87 32-69 (351)
285 PRK14964 DNA polymerase III su 40.8 12 0.00025 43.7 0.9 29 52-87 31-59 (491)
286 TIGR02903 spore_lon_C ATP-depe 40.8 17 0.00037 43.6 2.3 32 49-87 168-199 (615)
287 cd03115 SRP The signal recogni 40.8 11 0.00024 36.9 0.6 22 59-87 3-24 (173)
288 PRK14956 DNA polymerase III su 40.7 17 0.00037 42.1 2.2 34 47-87 30-64 (484)
289 PRK13539 cytochrome c biogenes 40.6 12 0.00025 38.1 0.7 18 54-75 26-43 (207)
290 PRK11124 artP arginine transpo 40.6 11 0.00025 39.0 0.7 18 54-75 26-43 (242)
291 cd00046 DEXDc DEAD-like helica 40.4 11 0.00024 33.9 0.5 22 59-87 3-24 (144)
292 cd03238 ABC_UvrA The excision 40.4 14 0.00031 36.8 1.4 18 54-75 19-36 (176)
293 PRK10790 putative multidrug tr 40.3 11 0.00024 44.7 0.7 27 54-87 365-391 (592)
294 cd03265 ABC_DrrA DrrA is the A 40.3 12 0.00026 38.3 0.8 18 54-75 24-41 (220)
295 cd03269 ABC_putative_ATPase Th 40.3 12 0.00025 37.9 0.7 18 54-75 24-41 (210)
296 TIGR03410 urea_trans_UrtE urea 40.2 12 0.00025 38.6 0.7 18 54-75 24-41 (230)
297 cd01124 KaiC KaiC is a circadi 40.2 12 0.00025 36.9 0.7 14 58-75 1-14 (187)
298 cd03223 ABCD_peroxisomal_ALDP 40.1 12 0.00026 36.7 0.7 18 54-75 25-42 (166)
299 TIGR01193 bacteriocin_ABC ABC- 40.1 11 0.00025 45.7 0.7 27 54-87 498-524 (708)
300 cd03245 ABCC_bacteriocin_expor 40.0 12 0.00026 38.2 0.7 18 54-75 28-45 (220)
301 PHA00729 NTP-binding motif con 40.0 17 0.00038 37.8 1.9 26 55-87 16-41 (226)
302 TIGR01184 ntrCD nitrate transp 40.0 12 0.00025 38.8 0.7 18 54-75 9-26 (230)
303 PRK14247 phosphate ABC transpo 39.9 14 0.00031 38.4 1.4 18 54-75 27-44 (250)
304 TIGR02323 CP_lyasePhnK phospho 39.9 15 0.00032 38.4 1.4 18 54-75 27-44 (253)
305 PRK06620 hypothetical protein; 39.8 23 0.00049 36.5 2.7 15 57-75 45-59 (214)
306 cd03254 ABCC_Glucan_exporter_l 39.6 16 0.00034 37.5 1.6 19 53-75 26-44 (229)
307 TIGR00972 3a0107s01c2 phosphat 39.6 12 0.00026 39.0 0.7 18 54-75 25-42 (247)
308 TIGR01978 sufC FeS assembly AT 39.3 13 0.00027 38.6 0.8 18 54-75 24-41 (243)
309 TIGR02538 type_IV_pilB type IV 39.3 11 0.00024 44.7 0.4 25 56-87 315-340 (564)
310 cd03234 ABCG_White The White s 39.3 13 0.00028 38.3 0.8 18 54-75 31-48 (226)
311 PRK15453 phosphoribulokinase; 39.2 11 0.00024 40.7 0.3 23 58-87 7-29 (290)
312 cd03294 ABC_Pro_Gly_Bertaine T 39.2 12 0.00027 39.7 0.7 18 54-75 48-65 (269)
313 PRK04220 2-phosphoglycerate ki 39.2 17 0.00036 39.6 1.7 27 54-87 90-116 (301)
314 TIGR02211 LolD_lipo_ex lipopro 39.0 15 0.00033 37.4 1.3 18 54-75 29-46 (221)
315 cd03261 ABC_Org_Solvent_Resist 39.0 13 0.00027 38.5 0.7 18 54-75 24-41 (235)
316 TIGR00679 hpr-ser Hpr(Ser) kin 39.0 13 0.00027 40.5 0.7 23 56-85 146-168 (304)
317 COG0542 clpA ATP-binding subun 38.7 8.2 0.00018 47.0 -0.8 21 64-87 525-545 (786)
318 PRK14955 DNA polymerase III su 38.6 20 0.00043 40.5 2.3 35 46-87 27-62 (397)
319 PRK00023 cmk cytidylate kinase 38.5 11 0.00025 39.0 0.3 24 57-87 5-28 (225)
320 TIGR02203 MsbA_lipidA lipid A 38.5 13 0.00028 43.9 0.7 18 54-75 356-373 (571)
321 TIGR03797 NHPM_micro_ABC2 NHPM 38.4 13 0.00027 45.1 0.7 27 54-87 477-503 (686)
322 COG2804 PulE Type II secretory 38.3 12 0.00025 43.3 0.4 28 54-87 255-282 (500)
323 PRK14242 phosphate transporter 38.3 13 0.00028 38.9 0.6 18 54-75 30-47 (253)
324 PRK02496 adk adenylate kinase; 38.3 12 0.00026 37.1 0.4 22 59-87 4-25 (184)
325 PRK14530 adenylate kinase; Pro 38.2 12 0.00025 38.3 0.3 23 58-87 5-27 (215)
326 cd03237 ABC_RNaseL_inhibitor_d 38.1 13 0.00028 39.0 0.7 17 55-75 24-40 (246)
327 KOG0377|consensus 38.1 40 0.00086 38.2 4.3 19 662-680 19-37 (631)
328 PRK11248 tauB taurine transpor 38.1 13 0.00029 39.1 0.7 18 54-75 25-42 (255)
329 PRK13657 cyclic beta-1,2-gluca 38.0 13 0.00028 44.2 0.7 27 54-87 359-385 (588)
330 TIGR02770 nickel_nikD nickel i 38.0 13 0.00029 38.3 0.7 18 54-75 10-27 (230)
331 PRK13645 cbiO cobalt transport 38.0 13 0.00027 40.0 0.6 18 54-75 35-52 (289)
332 cd03301 ABC_MalK_N The N-termi 37.8 14 0.0003 37.5 0.7 18 54-75 24-41 (213)
333 cd03233 ABC_PDR_domain1 The pl 37.8 17 0.00036 36.9 1.4 18 54-75 31-48 (202)
334 TIGR02881 spore_V_K stage V sp 37.8 12 0.00027 39.4 0.5 26 55-87 41-66 (261)
335 cd03215 ABC_Carb_Monos_II This 37.8 16 0.00035 36.2 1.3 18 54-75 24-41 (182)
336 TIGR02204 MsbA_rel ABC transpo 37.8 13 0.00029 43.8 0.7 27 53-86 363-389 (576)
337 COG2884 FtsE Predicted ATPase 37.6 12 0.00026 38.2 0.2 24 224-247 93-116 (223)
338 PRK11629 lolD lipoprotein tran 37.6 14 0.00029 38.2 0.7 18 54-75 33-50 (233)
339 PF09439 SRPRB: Signal recogni 37.5 16 0.00034 36.9 1.1 15 57-75 4-18 (181)
340 cd02026 PRK Phosphoribulokinas 37.4 12 0.00026 40.1 0.3 18 67-87 6-23 (273)
341 cd01672 TMPK Thymidine monopho 37.4 12 0.00027 36.8 0.4 22 59-87 3-24 (200)
342 PRK10584 putative ABC transpor 37.4 14 0.0003 38.0 0.7 18 54-75 34-51 (228)
343 PF03205 MobB: Molybdopterin g 37.3 11 0.00025 36.1 0.1 18 67-87 7-24 (140)
344 TIGR00176 mobB molybdopterin-g 37.3 12 0.00027 36.4 0.3 18 67-87 6-23 (155)
345 COG3839 MalK ABC-type sugar tr 37.2 12 0.00026 41.4 0.2 34 228-261 93-126 (338)
346 cd03298 ABC_ThiQ_thiamine_tran 37.2 14 0.0003 37.4 0.7 18 54-75 22-39 (211)
347 cd03273 ABC_SMC2_euk Eukaryoti 37.2 13 0.00029 38.9 0.5 15 57-75 26-40 (251)
348 PRK11300 livG leucine/isoleuci 37.1 17 0.00038 37.9 1.4 18 54-75 29-46 (255)
349 cd03250 ABCC_MRP_domain1 Domai 37.1 15 0.00032 37.1 0.8 19 53-75 28-46 (204)
350 cd03222 ABC_RNaseL_inhibitor T 37.0 13 0.00029 37.1 0.5 19 53-75 22-40 (177)
351 TIGR02857 CydD thiol reductant 37.0 14 0.0003 43.3 0.7 28 53-87 345-372 (529)
352 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 37.0 17 0.00037 37.4 1.3 18 54-75 46-63 (224)
353 PRK13538 cytochrome c biogenes 36.9 14 0.00031 37.3 0.7 18 54-75 25-42 (204)
354 PRK13540 cytochrome c biogenes 36.9 14 0.00031 37.1 0.7 18 54-75 25-42 (200)
355 PRK14237 phosphate transporter 36.8 18 0.0004 38.3 1.6 18 54-75 44-61 (267)
356 PRK14970 DNA polymerase III su 36.7 26 0.00057 38.8 2.9 56 23-87 7-63 (367)
357 COG1118 CysA ABC-type sulfate/ 36.6 9.7 0.00021 41.4 -0.6 16 56-75 28-43 (345)
358 PRK11247 ssuB aliphatic sulfon 36.5 14 0.00031 39.0 0.7 18 54-75 36-53 (257)
359 PRK14248 phosphate ABC transpo 36.4 15 0.00031 39.0 0.7 18 54-75 45-62 (268)
360 TIGR00017 cmk cytidylate kinas 36.4 14 0.0003 38.2 0.5 23 58-87 4-26 (217)
361 cd03267 ABC_NatA_like Similar 36.3 14 0.00031 38.2 0.7 18 54-75 45-62 (236)
362 PRK09493 glnQ glutamine ABC tr 36.3 15 0.00032 38.1 0.7 18 54-75 25-42 (240)
363 cd03246 ABCC_Protease_Secretio 36.2 18 0.0004 35.5 1.4 18 54-75 26-43 (173)
364 PRK11831 putative ABC transpor 36.2 19 0.00041 38.2 1.6 18 54-75 31-48 (269)
365 PRK13541 cytochrome c biogenes 36.2 15 0.00032 36.8 0.7 18 54-75 24-41 (195)
366 TIGR03740 galliderm_ABC gallid 36.1 18 0.00039 37.0 1.3 18 54-75 24-41 (223)
367 PLN02796 D-glycerate 3-kinase 36.1 13 0.00028 41.2 0.3 22 59-87 103-124 (347)
368 TIGR02324 CP_lyasePhnL phospho 36.1 15 0.00032 37.6 0.7 18 54-75 32-49 (224)
369 TIGR03411 urea_trans_UrtD urea 36.0 19 0.00042 37.2 1.6 18 54-75 26-43 (242)
370 PRK03731 aroL shikimate kinase 36.0 14 0.00031 36.0 0.5 24 57-87 3-26 (171)
371 PRK13946 shikimate kinase; Pro 35.8 15 0.00032 36.7 0.6 26 55-87 9-34 (184)
372 PRK13646 cbiO cobalt transport 35.8 15 0.00032 39.5 0.6 18 54-75 31-48 (286)
373 PF06309 Torsin: Torsin; Inte 35.8 63 0.0014 30.7 4.7 21 353-373 59-79 (127)
374 cd03257 ABC_NikE_OppD_transpor 35.8 15 0.00032 37.6 0.6 18 54-75 29-46 (228)
375 cd03214 ABC_Iron-Siderophores_ 35.8 15 0.00034 36.3 0.8 18 54-75 23-40 (180)
376 TIGR02237 recomb_radB DNA repa 35.8 20 0.00043 36.2 1.5 17 55-75 11-27 (209)
377 PRK14732 coaE dephospho-CoA ki 35.7 24 0.00051 35.9 2.1 13 59-75 2-14 (196)
378 PF04851 ResIII: Type III rest 35.7 15 0.00033 35.4 0.7 26 55-87 24-49 (184)
379 TIGR03375 type_I_sec_LssB type 35.7 15 0.00032 44.6 0.7 27 54-87 489-515 (694)
380 COG4608 AppF ABC-type oligopep 35.7 56 0.0012 34.9 4.9 22 354-375 46-67 (268)
381 cd03271 ABC_UvrA_II The excisi 35.6 20 0.00042 38.3 1.5 18 54-75 19-36 (261)
382 cd03221 ABCF_EF-3 ABCF_EF-3 E 35.5 19 0.00042 34.3 1.4 18 54-75 24-41 (144)
383 cd03236 ABC_RNaseL_inhibitor_d 35.5 16 0.00034 38.8 0.7 18 54-75 24-41 (255)
384 TIGR01967 DEAH_box_HrpA ATP-de 35.4 17 0.00038 46.9 1.3 18 54-75 80-97 (1283)
385 PRK13947 shikimate kinase; Pro 35.4 15 0.00032 35.8 0.5 23 58-87 3-25 (171)
386 PF12775 AAA_7: P-loop contain 35.4 16 0.00034 39.2 0.7 34 37-75 15-48 (272)
387 cd03290 ABCC_SUR1_N The SUR do 35.4 16 0.00034 37.3 0.7 18 54-75 25-42 (218)
388 PRK13632 cbiO cobalt transport 35.4 19 0.0004 38.3 1.3 18 54-75 33-50 (271)
389 PRK14974 cell division protein 35.3 17 0.00037 40.2 1.0 26 55-87 139-164 (336)
390 PRK10416 signal recognition pa 35.3 17 0.00036 39.9 1.0 26 55-87 113-138 (318)
391 COG4181 Predicted ABC-type tra 35.3 20 0.00044 36.0 1.4 18 54-75 34-51 (228)
392 cd03228 ABCC_MRP_Like The MRP 35.2 19 0.00042 35.2 1.3 18 54-75 26-43 (171)
393 PF13086 AAA_11: AAA domain; P 35.1 17 0.00036 36.6 0.9 23 58-87 19-41 (236)
394 PRK14267 phosphate ABC transpo 35.1 16 0.00034 38.2 0.7 18 54-75 28-45 (253)
395 cd03216 ABC_Carb_Monos_I This 34.9 19 0.00042 35.1 1.2 18 54-75 24-41 (163)
396 cd03247 ABCC_cytochrome_bd The 34.8 16 0.00035 36.0 0.7 18 54-75 26-43 (178)
397 TIGR01277 thiQ thiamine ABC tr 34.8 15 0.00033 37.3 0.6 18 54-75 22-39 (213)
398 TIGR00390 hslU ATP-dependent p 34.8 23 0.0005 40.4 2.0 25 56-87 47-71 (441)
399 PRK08699 DNA polymerase III su 34.7 23 0.00049 39.0 1.9 37 44-87 7-45 (325)
400 PRK14250 phosphate ABC transpo 34.7 16 0.00035 38.0 0.7 18 54-75 27-44 (241)
401 PF03215 Rad17: Rad17 cell cyc 34.6 23 0.00049 41.6 1.9 56 25-87 11-69 (519)
402 cd03295 ABC_OpuCA_Osmoprotecti 34.6 16 0.00036 37.8 0.8 18 54-75 25-42 (242)
403 PRK14251 phosphate ABC transpo 34.5 16 0.00036 38.0 0.7 18 54-75 28-45 (251)
404 PRK10247 putative ABC transpor 34.5 17 0.00036 37.5 0.7 18 54-75 31-48 (225)
405 PF13604 AAA_30: AAA domain; P 34.4 23 0.0005 35.8 1.8 35 45-87 8-42 (196)
406 PRK13341 recombination factor 34.4 29 0.00063 42.4 2.9 36 45-87 41-76 (725)
407 PRK10522 multidrug transporter 34.3 16 0.00034 43.0 0.6 26 54-86 347-372 (547)
408 PRK14240 phosphate transporter 34.3 17 0.00036 38.0 0.7 18 54-75 27-44 (250)
409 PRK13648 cbiO cobalt transport 34.3 17 0.00036 38.6 0.7 18 54-75 33-50 (269)
410 cd03263 ABC_subfamily_A The AB 34.2 17 0.00036 37.1 0.7 18 54-75 26-43 (220)
411 cd03252 ABCC_Hemolysin The ABC 34.2 17 0.00036 37.6 0.7 18 54-75 26-43 (237)
412 cd03217 ABC_FeS_Assembly ABC-t 34.1 21 0.00045 36.0 1.4 18 54-75 24-41 (200)
413 PRK01184 hypothetical protein; 34.1 14 0.00031 36.4 0.2 16 59-81 4-19 (184)
414 PF13476 AAA_23: AAA domain; P 34.1 20 0.00044 35.2 1.3 16 56-75 19-34 (202)
415 PRK10419 nikE nickel transport 34.1 17 0.00036 38.6 0.7 18 54-75 36-53 (268)
416 TIGR00958 3a01208 Conjugate Tr 34.0 16 0.00036 44.4 0.7 27 54-87 505-531 (711)
417 TIGR03796 NHPM_micro_ABC1 NHPM 34.0 16 0.00035 44.4 0.7 27 54-87 503-529 (710)
418 TIGR01188 drrA daunorubicin re 34.0 17 0.00036 39.4 0.7 18 54-75 17-34 (302)
419 cd03232 ABC_PDR_domain2 The pl 34.0 17 0.00036 36.5 0.7 18 54-75 31-48 (192)
420 PRK05896 DNA polymerase III su 33.9 27 0.00059 41.6 2.4 35 46-87 27-62 (605)
421 PRK14239 phosphate transporter 33.9 20 0.00044 37.3 1.3 18 54-75 29-46 (252)
422 cd03213 ABCG_EPDR ABCG transpo 33.9 21 0.00046 35.8 1.4 18 54-75 33-50 (194)
423 PRK13638 cbiO cobalt transport 33.9 16 0.00036 38.7 0.6 18 54-75 25-42 (271)
424 PRK14255 phosphate ABC transpo 33.9 20 0.00044 37.4 1.3 18 54-75 29-46 (252)
425 PRK10744 pstB phosphate transp 33.9 17 0.00036 38.3 0.7 18 54-75 37-54 (260)
426 PF13173 AAA_14: AAA domain 33.9 17 0.00037 33.8 0.7 25 56-87 2-26 (128)
427 cd03299 ABC_ModC_like Archeal 33.8 22 0.00048 36.8 1.5 18 54-75 23-40 (235)
428 PRK06835 DNA replication prote 33.8 29 0.00063 38.3 2.5 26 55-87 182-207 (329)
429 TIGR03005 ectoine_ehuA ectoine 33.8 17 0.00037 38.0 0.7 18 54-75 24-41 (252)
430 cd03231 ABC_CcmA_heme_exporter 33.8 17 0.00036 36.7 0.6 18 54-75 24-41 (201)
431 PRK14273 phosphate ABC transpo 33.7 17 0.00037 38.0 0.7 18 54-75 31-48 (254)
432 PRK10575 iron-hydroxamate tran 33.7 17 0.00037 38.4 0.7 18 54-75 35-52 (265)
433 cd00267 ABC_ATPase ABC (ATP-bi 33.6 21 0.00046 34.3 1.3 18 54-75 23-40 (157)
434 TIGR02880 cbbX_cfxQ probable R 33.6 15 0.00033 39.5 0.3 23 58-87 60-82 (284)
435 PRK13543 cytochrome c biogenes 33.5 21 0.00045 36.4 1.3 18 54-75 35-52 (214)
436 PRK11264 putative amino-acid A 33.5 17 0.00038 37.8 0.7 18 54-75 27-44 (250)
437 PRK10418 nikD nickel transport 33.5 17 0.00038 38.0 0.7 18 54-75 27-44 (254)
438 smart00129 KISc Kinesin motor, 33.5 33 0.00071 37.6 2.9 20 52-75 76-95 (335)
439 TIGR01970 DEAH_box_HrpB ATP-de 33.5 24 0.00052 43.7 2.0 30 39-75 3-32 (819)
440 COG4152 ABC-type uncharacteriz 33.4 14 0.00031 39.0 0.1 82 225-308 108-201 (300)
441 PRK11144 modC molybdate transp 33.4 17 0.00038 40.3 0.7 18 54-75 22-39 (352)
442 TIGR01288 nodI ATP-binding ABC 33.4 17 0.00037 39.3 0.7 18 54-75 28-45 (303)
443 TIGR01189 ccmA heme ABC export 33.4 18 0.00039 36.3 0.8 18 54-75 24-41 (198)
444 PRK10253 iron-enterobactin tra 33.3 23 0.00049 37.5 1.6 18 54-75 31-48 (265)
445 TIGR00968 3a0106s01 sulfate AB 33.3 17 0.00038 37.6 0.7 18 54-75 24-41 (237)
446 PRK14269 phosphate ABC transpo 33.3 21 0.00046 37.2 1.3 18 54-75 26-43 (246)
447 TIGR02640 gas_vesic_GvpN gas v 33.2 21 0.00045 37.9 1.2 31 38-75 6-36 (262)
448 cd01376 KISc_KID_like Kinesin 33.2 36 0.00078 37.2 3.1 19 53-75 78-96 (319)
449 PRK08116 hypothetical protein; 33.2 25 0.00053 37.6 1.8 26 55-87 113-138 (268)
450 COG0802 Predicted ATPase or ki 33.1 17 0.00037 35.4 0.6 27 54-87 23-49 (149)
451 PRK14274 phosphate ABC transpo 33.0 21 0.00046 37.5 1.3 18 54-75 36-53 (259)
452 PRK11160 cysteine/glutathione 32.9 18 0.00038 43.0 0.7 27 54-87 364-390 (574)
453 cd03249 ABC_MTABC3_MDL1_MDL2 M 32.9 18 0.00038 37.4 0.6 18 54-75 27-44 (238)
454 PRK09580 sufC cysteine desulfu 32.9 23 0.0005 36.8 1.5 18 54-75 25-42 (248)
455 PF07499 RuvA_C: RuvA, C-termi 32.8 73 0.0016 24.5 3.9 26 228-253 3-28 (47)
456 PRK10851 sulfate/thiosulfate t 32.7 18 0.00039 40.3 0.7 18 54-75 26-43 (353)
457 PRK14957 DNA polymerase III su 32.7 28 0.00062 41.1 2.4 28 53-87 35-62 (546)
458 TIGR03771 anch_rpt_ABC anchore 32.7 18 0.00039 37.1 0.7 17 55-75 5-21 (223)
459 PF00580 UvrD-helicase: UvrD/R 32.6 19 0.00042 38.1 0.9 30 50-87 8-37 (315)
460 PRK14532 adenylate kinase; Pro 32.6 17 0.00036 36.2 0.4 22 59-87 3-24 (188)
461 PRK10619 histidine/lysine/argi 32.6 18 0.00039 37.9 0.7 18 54-75 29-46 (257)
462 PRK14238 phosphate transporter 32.6 19 0.00041 38.3 0.8 18 54-75 48-65 (271)
463 PRK10261 glutathione transport 32.5 18 0.00038 43.5 0.6 27 54-87 40-66 (623)
464 PRK10771 thiQ thiamine transpo 32.4 19 0.0004 37.2 0.7 18 54-75 23-40 (232)
465 PRK10895 lipopolysaccharide AB 32.4 22 0.00049 36.8 1.3 18 54-75 27-44 (241)
466 PRK09544 znuC high-affinity zi 32.4 18 0.0004 38.0 0.7 18 54-75 28-45 (251)
467 PRK14241 phosphate transporter 32.4 22 0.00048 37.3 1.3 18 54-75 28-45 (258)
468 PRK14268 phosphate ABC transpo 32.4 19 0.0004 37.9 0.7 18 54-75 36-53 (258)
469 cd00879 Sar1 Sar1 subfamily. 32.3 36 0.00077 33.5 2.7 26 46-75 9-34 (190)
470 PF01580 FtsK_SpoIIIE: FtsK/Sp 32.3 15 0.00033 37.0 0.1 23 58-87 40-62 (205)
471 cd03248 ABCC_TAP TAP, the Tran 32.2 23 0.00049 36.3 1.3 18 54-75 38-55 (226)
472 TIGR02974 phageshock_pspF psp 32.2 23 0.00049 39.0 1.4 18 54-75 20-37 (329)
473 CHL00081 chlI Mg-protoporyphyr 32.2 26 0.00056 39.0 1.8 27 54-87 36-62 (350)
474 PRK10646 ADP-binding protein; 32.1 16 0.00036 35.7 0.3 24 57-87 29-52 (153)
475 PF10412 TrwB_AAD_bind: Type I 32.1 14 0.0003 41.7 -0.4 22 50-75 9-30 (386)
476 TIGR00041 DTMP_kinase thymidyl 32.1 17 0.00037 36.1 0.4 24 57-87 4-27 (195)
477 PF01695 IstB_IS21: IstB-like 32.0 18 0.00039 36.1 0.5 27 54-87 45-71 (178)
478 COG1117 PstB ABC-type phosphat 32.0 16 0.00035 37.8 0.2 117 173-308 93-219 (253)
479 cd03369 ABCC_NFT1 Domain 2 of 31.9 23 0.00051 35.7 1.3 18 54-75 32-49 (207)
480 PRK08472 fliI flagellum-specif 31.9 26 0.00057 40.1 1.8 41 38-85 139-179 (434)
481 cd01428 ADK Adenylate kinase ( 31.8 17 0.00037 36.0 0.3 20 59-85 2-21 (194)
482 PRK12608 transcription termina 31.8 22 0.00047 40.0 1.1 40 41-87 118-157 (380)
483 TIGR01194 cyc_pep_trnsptr cycl 31.8 18 0.0004 42.6 0.6 27 54-87 366-392 (555)
484 cd03244 ABCC_MRP_domain2 Domai 31.7 20 0.00042 36.6 0.7 18 54-75 28-45 (221)
485 PRK13548 hmuV hemin importer A 31.7 19 0.00041 37.9 0.7 18 54-75 26-43 (258)
486 COG3709 Uncharacterized compon 31.7 24 0.00052 35.1 1.2 19 58-87 7-25 (192)
487 PRK11701 phnK phosphonate C-P 31.7 19 0.00041 37.9 0.6 18 54-75 30-47 (258)
488 PRK00279 adk adenylate kinase; 31.6 18 0.00038 37.0 0.4 23 58-87 2-24 (215)
489 TIGR01351 adk adenylate kinase 31.6 17 0.00037 36.9 0.3 22 59-87 2-23 (210)
490 PRK13695 putative NTPase; Prov 31.6 17 0.00038 35.6 0.3 22 59-87 3-24 (174)
491 cd01983 Fer4_NifH The Fer4_Nif 31.5 18 0.00039 30.6 0.4 18 67-87 6-23 (99)
492 TIGR02397 dnaX_nterm DNA polym 31.5 30 0.00065 37.9 2.2 29 52-87 32-60 (355)
493 cd01128 rho_factor Transcripti 31.4 20 0.00044 37.9 0.8 31 50-87 10-40 (249)
494 PTZ00265 multidrug resistance 31.3 19 0.00042 47.6 0.8 27 54-87 1192-1218(1466)
495 PRK15056 manganese/iron transp 31.3 20 0.00043 38.1 0.7 18 54-75 31-48 (272)
496 PRK09435 membrane ATPase/prote 31.3 31 0.00068 38.1 2.3 28 53-87 53-80 (332)
497 PRK14950 DNA polymerase III su 31.3 24 0.00052 42.0 1.5 28 53-87 35-62 (585)
498 PRK11432 fbpC ferric transport 31.3 20 0.00043 39.9 0.7 18 54-75 30-47 (351)
499 PRK06305 DNA polymerase III su 31.3 35 0.00076 39.3 2.8 34 47-87 29-63 (451)
500 cd02034 CooC The accessory pro 31.2 18 0.0004 33.5 0.4 22 59-87 2-23 (116)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.1e-135 Score=1194.00 Aligned_cols=587 Identities=39% Similarity=0.605 Sum_probs=509.9
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|-+|||||||+.+|||++++++.|++++..++||||||||+.||++|+..++||||||| ||||||||+ ++
T Consensus 97 TYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiIS----GESGAGKTe---~a 169 (1463)
T COG5022 97 TYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIIS----GESGAGKTE---NA 169 (1463)
T ss_pred EEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEe----cCCCCCchH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|.+|+|| +.++++.+ +...+++++|+++||||||||||+|+|||||||||||+++.||.+|.|+||
T Consensus 170 K~ImqYl-------asv~~s~~-------~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA 235 (1463)
T COG5022 170 KRIMQYL-------ASVTSSST-------VEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGA 235 (1463)
T ss_pred HHHHHHH-------HHhccCCc-------chHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceech
Confidence 9999999 66655433 234579999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|.+|||||||||+|+.+|||||||||||+|.+.+.+..+++..+.+|.|+++++|..++++||.++|..|++||+++||
T Consensus 236 ~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi 315 (1463)
T COG5022 236 KIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGI 315 (1463)
T ss_pred hhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999997777888888899999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeecc------------------ccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHHH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKAA------------------VIAVPKQPLIDALTRKTFFAQGETVISTLSREQSVD 302 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~~------------------~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~ 302 (750)
+.++|.+||++||||||||||+|.+. ++|||++.+.++|+++.+.++||.+.+|++..||..
T Consensus 316 ~~eeq~~IF~iLAaILhiGNIef~~~r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ 395 (1463)
T COG5022 316 DEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALA 395 (1463)
T ss_pred ChHHHHHHHHHHHHHHhhcceeeeecccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHH
Confidence 99999999999999999999999742 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchhH
Q psy14295 303 VRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWIE 382 (750)
Q Consensus 303 ~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~~ 382 (750)
.||+|||.||++||+|||++||.+|+.+.. ...+||||||+|||.|+.||
T Consensus 396 irdslAK~lY~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNS----------------------------- 445 (1463)
T COG5022 396 IRDSLAKALYSNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNS----------------------------- 445 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCc-----------------------------
Confidence 999999999999999999999999987754 67899999999999999998
Q ss_pred HHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q psy14295 383 QQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAV 462 (750)
Q Consensus 383 ~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~ 462 (750)
T Consensus 446 -------------------------------------------------------------------------------- 445 (1463)
T COG5022 446 -------------------------------------------------------------------------------- 445 (1463)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHh-hchhhhhcchhhccCCCCc
Q psy14295 463 LHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAI-KQLNIMALIDEESKFPKGT 541 (750)
Q Consensus 463 l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~-~~~gi~~~l~~~~~~~~~~ 541 (750)
|||||||||||+||++|++|+|+.|||+|.+|+|.|..|+|.||++|||||++ .|.|||++|||||.+|.|+
T Consensus 446 -------FEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~at 518 (1463)
T COG5022 446 -------FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHAT 518 (1463)
T ss_pred -------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999996 4899999999999999999
Q ss_pred hhhHHHHHHHHhC--CCCCccCCCCCCCCCeeeecccceEEeecc-----------------------------------
Q psy14295 542 DHTLLAKLHKTHG--LHRNYLKPKSDINTSFGLNHFAGVVFYDTR----------------------------------- 584 (750)
Q Consensus 542 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~----------------------------------- 584 (750)
|++|.+|+.+.++ .++.|.+++- ++..|.|.||||+|.||++
T Consensus 519 d~s~~sKL~~~l~~~~~~~f~~~rf-~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~ 597 (1463)
T COG5022 519 DESFTSKLAQRLNKNSNPKFKKSRF-RDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEEN 597 (1463)
T ss_pred chHHHHHHHHHhccccCcccccccc-CCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhh
Confidence 9999999999986 3566666654 3568999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14295 585 -------------------------------------------------------------------------------- 584 (750)
Q Consensus 585 -------------------------------------------------------------------------------- 584 (750)
T Consensus 598 ~~~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~E 677 (1463)
T COG5022 598 IESKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDE 677 (1463)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHH
Confidence
Q ss_pred -------------------------------------------------------------cchhhhhhHHHhhhhhhhh
Q psy14295 585 -------------------------------------------------------------ERDRVLTRNILVLQKNIRG 603 (750)
Q Consensus 585 -------------------------------------------------------------~R~~~l~~a~v~IQ~~~Rg 603 (750)
.|+..++..+..||+.|||
T Consensus 678 Fv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~ 757 (1463)
T COG5022 678 FVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRG 757 (1463)
T ss_pred HHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHhHHHHHH--
Q psy14295 604 WVYRRRYKRLRAATMTIQKYWKGWAQRRRY--QRMRVGYMRLQALIRSRLLSHRFRHLRGHIVGLQ-ARARGYLTRRM-- 678 (750)
Q Consensus 604 ~~~Rr~~~~~r~aai~IQs~~Rg~~~R~~~--~~~r~a~~~IQs~~R~~~~R~~~~~~~~aai~IQ-a~~Rg~laRr~-- 678 (750)
+..|+++....+....+|..-+|+..|+.. ...-..++.+|+.|+...-|+.|......+..+| ..+|....+..
T Consensus 758 ~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e 837 (1463)
T COG5022 758 RYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEE 837 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 555555554444444444333333333221 1112345666666666666666666666677777 55655555553
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 679 YAQKMWAIVKIQAHVRRMIAQRHYQKLQFEYQSQIEALKLKRKEEREL 726 (750)
Q Consensus 679 y~~~r~Aai~IQs~~R~~~aRr~y~~lk~~~~~~~~~~r~~~~~e~~~ 726 (750)
-..+.++.+.+|++||.+..++.|..++......+..+|+..++++..
T Consensus 838 ~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~ 885 (1463)
T COG5022 838 VEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQ 885 (1463)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333457999999999999999999999999999999988877766533
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=9.6e-132 Score=1167.38 Aligned_cols=560 Identities=29% Similarity=0.506 Sum_probs=483.6
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcC-CCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDK-KIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~-~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+|++|||||||+.+|+|++++++.|+++ ...++|||||+||+.||++|.+.++||||||| ||||||||| +
T Consensus 127 Ty~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiS----GESGAGKTe---~ 199 (821)
T PTZ00014 127 TTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVS----GESGAGKTE---A 199 (821)
T ss_pred eeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEE----cCCCCCchH---H
Confidence 899999999999999999999999999985 56889999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
+|++|+|| +..++.. ...+|+++|+++||||||||||||++||||||||||++|+|+.+|.|+|
T Consensus 200 tK~im~yl-------a~~~~~~---------~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 200 TKQIMRYF-------ASSKSGN---------MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred HHHHHHHH-------HHhccCC---------CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999 5544321 1246999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
|+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++ +|..+++.||.++|..++.||+.||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999995 4677889999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeec------------------------cccCCChHHHHHHHhhceeccCCcEEEEeC
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKA------------------------AVIAVPKQPLIDALTRKTFFAQGETVISTL 295 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~------------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~ 295 (750)
|+++++.+||+|||||||||||+|.. .++||++++|.++|+.+++.++||.+++|+
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~ 422 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPW 422 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCC
Confidence 99999999999999999999999952 135999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhc
Q psy14295 296 SREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAIS 375 (750)
Q Consensus 296 ~~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~ 375 (750)
+++||..+||+|||+||++||+|||.+||.+|..+. ....+||||||||||+|+.||
T Consensus 423 ~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NS---------------------- 479 (821)
T PTZ00014 423 SKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNS---------------------- 479 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcch----------------------
Confidence 999999999999999999999999999999997553 356799999999999999998
Q ss_pred CCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHH
Q psy14295 376 GKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDV 455 (750)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i 455 (750)
T Consensus 480 -------------------------------------------------------------------------------- 479 (821)
T PTZ00014 480 -------------------------------------------------------------------------------- 479 (821)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhc
Q psy14295 456 FKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEES 535 (750)
Q Consensus 456 ~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~ 535 (750)
|||||||||||+||+||++++|+.||++|.+|||.|..++|.||++|||||+++|.||+++|||+|
T Consensus 480 --------------fEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec 545 (821)
T PTZ00014 480 --------------LEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQC 545 (821)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh--------hh
Q psy14295 536 KFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN--------IR 602 (750)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~--------~R 602 (750)
.+|+++|++|++|+.+.++.|+.|.+|+.+.+..|+|.||||+|.|+++ |||.+..+.+.++|.. |.
T Consensus 546 ~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~ 625 (821)
T PTZ00014 546 LAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFE 625 (821)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhc
Confidence 9999999999999999999999999888655679999999999999999 7776555555444432 21
Q ss_pred h---------------HHHHHHHHHHHHH-------------------------------------HHhhhhhhhhHHHH
Q psy14295 603 G---------------WVYRRRYKRLRAA-------------------------------------TMTIQKYWKGWAQR 630 (750)
Q Consensus 603 g---------------~~~Rr~~~~~r~a-------------------------------------ai~IQs~~Rg~~~R 630 (750)
+ ...|..+..+... .-.|+-.--||..|
T Consensus 626 ~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R 705 (821)
T PTZ00014 626 GVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYR 705 (821)
T ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCccc
Confidence 1 1123333322110 11223333455555
Q ss_pred HHHHhhhHHHHHH----------------HHHHHHH-----------------------HH---HHHHHhhhhhHHHHHH
Q psy14295 631 RRYQRMRVGYMRL----------------QALIRSR-----------------------LL---SHRFRHLRGHIVGLQA 668 (750)
Q Consensus 631 ~~~~~~r~a~~~I----------------Qs~~R~~-----------------------~~---R~~~~~~~~aai~IQa 668 (750)
..|..+...+..| +..+... +. +.+.......+..||+
T Consensus 706 ~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~ 785 (821)
T PTZ00014 706 RTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEA 785 (821)
T ss_pred ccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443322211 1111110 00 0111112346789999
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14295 669 RARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRH 701 (750)
Q Consensus 669 ~~Rg~laRr~y~~~r~Aai~IQs~~R~~~aRr~ 701 (750)
+||||++|++|.+++.|+++||++||+|++++.
T Consensus 786 ~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 786 LILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998864
No 3
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.3e-124 Score=1094.42 Aligned_cols=459 Identities=71% Similarity=1.143 Sum_probs=437.4
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++|||||||+++|+|+++.++.|+++...++|||||+||+.||++|.++++||||||| ||||||||| ++
T Consensus 31 T~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiis----GESGaGKTe---s~ 103 (671)
T cd01381 31 TYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIIS----GESGAGKTE---ST 103 (671)
T ss_pred EeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEEE----cCCCCCeeh---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++.. ..++++|+++||||||||||||++|+||||||||++|+|+.+|.|+||
T Consensus 104 K~i~~yL-------a~~s~~~-----------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga 165 (671)
T cd01381 104 KLILQYL-------AAISGKH-----------SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGA 165 (671)
T ss_pred HHHHHHH-------HHhcCCC-----------CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcEEEE
Confidence 9999999 6666543 258999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|++||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||+++++...++.||.++|..++.||+.|||
T Consensus 166 ~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~ 245 (671)
T cd01381 166 KIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLMF 245 (671)
T ss_pred EEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec---------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhh
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA---------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQ 299 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~---------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~ 299 (750)
+++++.+||+||||||||||++|.. .++||++++|.++||++++.++||.+.+|+++++
T Consensus 246 ~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~q 325 (671)
T cd01381 246 TDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTPLSREQ 325 (671)
T ss_pred CHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEecCCHHH
Confidence 9999999999999999999999963 2469999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcc
Q psy14295 300 SVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHS 379 (750)
Q Consensus 300 A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~ 379 (750)
|.++||+|||+||++||+|||.+||.+|..+......+||||||||||+|..||
T Consensus 326 A~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~Ns-------------------------- 379 (671)
T cd01381 326 AVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNS-------------------------- 379 (671)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCC--------------------------
Confidence 999999999999999999999999999976644566799999999999999988
Q ss_pred hhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHH
Q psy14295 380 WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLL 459 (750)
Q Consensus 380 ~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~ 459 (750)
T Consensus 380 -------------------------------------------------------------------------------- 379 (671)
T cd01381 380 -------------------------------------------------------------------------------- 379 (671)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCC
Q psy14295 460 AAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPK 539 (750)
Q Consensus 460 ~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~ 539 (750)
|||||||||||+||+||++++|+.||++|.+|||+|..++|.||++|||||+++|.||+++|||||.+|+
T Consensus 380 ----------fEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~ 449 (671)
T cd01381 380 ----------FEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPK 449 (671)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 540 GTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
|+|++|++|+++.++.|+.|.+|+...+..|+|.||||.|.|+++ |||.+..+...+++..
T Consensus 450 ~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S 515 (671)
T cd01381 450 GTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSS 515 (671)
T ss_pred CCHHHHHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhC
Confidence 999999999999999999999887766789999999999999999 7787776766666654
No 4
>KOG0164|consensus
Probab=100.00 E-value=1.6e-123 Score=1021.02 Aligned_cols=447 Identities=42% Similarity=0.698 Sum_probs=415.7
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.++||++++|+.|++....+.|||+||||+.||+.|++.++||||+|| ||||||||| ++
T Consensus 39 TyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYrslk~r~rDtcI~IS----GESGAGKTE---AS 111 (1001)
T KOG0164|consen 39 TYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYRSLKRRSRDTCILIS----GESGAGKTE---AS 111 (1001)
T ss_pred EEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHHHHHhccCCeEEEEe----cCCCCCccH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|+ +.+.+...- ..-..+.+.+++|||||||||||||.+|||||||||||.+.||-+|..+|+
T Consensus 112 K~iMqYi-------AAvtn~~qq------~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG 178 (1001)
T KOG0164|consen 112 KIIMQYI-------AAVTNASQQ------GEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGG 178 (1001)
T ss_pred HHHHHHH-------HHhcCcccc------chHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCcccc
Confidence 9999999 766543211 001357789999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCC-CcccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELT-DASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
.|..|||||||||.|.+||||||||||||.|.++.+..+|+|. ++..|.||+++ +..+...+|+.+|..++.||.++|
T Consensus 179 ~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~dfk~V~~Am~vIg 257 (1001)
T KOG0164|consen 179 HITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASDFKAVQKAMRVIG 257 (1001)
T ss_pred hHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999997 68899999998 667788999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeecc-----------------ccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHHH
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKAA-----------------VIAVPKQPLIDALTRKTFFAQGETVISTLSREQSVD 302 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~~-----------------~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~ 302 (750)
|+++|+.+||+|+|||||||||.|.+. +++|.+++|.++|+.+++.++||.+.++++++||.+
T Consensus 258 Fs~eEVe~v~~iiAavLhLGNv~f~~~ed~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~Y 337 (1001)
T KOG0164|consen 258 FSEEEVESVLSIIAAVLHLGNVEFADNEDSSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGGEIVLKQHNVEQASY 337 (1001)
T ss_pred CCHHHHHHHHHHHHHHHhccceEEeecCcccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhccchhhccccHHHHHH
Confidence 999999999999999999999999742 459999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCC----CccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCc
Q psy14295 303 VRDAFVKGIYGRLFVYITHKINSAIYRPKNQ----ARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKH 378 (750)
Q Consensus 303 ~rdalak~LY~~LF~wiV~~iN~~L~~~~~~----~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~ 378 (750)
+||||||++|+|||.|||.+||+.+...... ....||+|||||||.|..||
T Consensus 338 aRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NS------------------------- 392 (1001)
T KOG0164|consen 338 ARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNS------------------------- 392 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCc-------------------------
Confidence 9999999999999999999999999654222 23689999999999999998
Q ss_pred chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHH
Q psy14295 379 SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKL 458 (750)
Q Consensus 379 ~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~ 458 (750)
T Consensus 393 -------------------------------------------------------------------------------- 392 (1001)
T KOG0164|consen 393 -------------------------------------------------------------------------------- 392 (1001)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCC
Q psy14295 459 LAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFP 538 (750)
Q Consensus 459 ~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~ 538 (750)
|||||||||||+||+.|++-+++.|||||..|||.|.+++|.+|.-++||++.+..||+++|||+|+.|
T Consensus 393 -----------FEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~ 461 (1001)
T KOG0164|consen 393 -----------FEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRP 461 (1001)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-CchhhHHHHHHHHhCCCCCccCCCCC------CCCCeeeecccceEEeecc
Q psy14295 539 K-GTDHTLLAKLHKTHGLHRNYLKPKSD------INTSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 539 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~F~I~H~aG~V~Yd~~ 584 (750)
+ .||++|+++|.+.++.|+.|...+.. .-.+|.|.||||.|+|+++
T Consensus 462 G~vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~ 514 (1001)
T KOG0164|consen 462 GTVTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVE 514 (1001)
T ss_pred CccchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEE
Confidence 5 48999999999999999888643321 2358999999999999998
No 5
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.5e-123 Score=1088.12 Aligned_cols=464 Identities=45% Similarity=0.740 Sum_probs=435.2
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++|||||||+.+|+|++++++.|+++...++|||||+||+.||++|.++++||||||| ||||||||| ++
T Consensus 31 T~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiiS----GESGaGKTe---s~ 103 (691)
T cd01380 31 TYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVS----GESGAGKTV---SA 103 (691)
T ss_pred EeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEE----cCCCCCchH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++.... ......|+++|+++||||||||||||++|+||||||||++|+|+.+|.|+||
T Consensus 104 K~i~~yL-------a~~~~~~~~-----~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga 171 (691)
T cd01380 104 KYIMRYF-------ASVGGSDSR-----EVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGA 171 (691)
T ss_pred HHHHHHH-------HHhcCCCcc-----cccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEE
Confidence 9999999 666543211 1123579999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|++||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||+++++...++.+|..+|++++.||+.|||
T Consensus 172 ~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~ 251 (691)
T cd01380 172 NMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLLGI 251 (691)
T ss_pred EEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSV 301 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~ 301 (750)
+++++.+||+|||||||||||+|.. .++||++++|.++|+.+++.++||.+++++++++|.
T Consensus 252 s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~ 331 (691)
T cd01380 252 SEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAI 331 (691)
T ss_pred CHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCeeEEecCCHHHHH
Confidence 9999999999999999999999962 246999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCC--CCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcc
Q psy14295 302 DVRDAFVKGIYGRLFVYITHKINSAIYRPK--NQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHS 379 (750)
Q Consensus 302 ~~rdalak~LY~~LF~wiV~~iN~~L~~~~--~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~ 379 (750)
++||+|||+||++||+|||.+||.+|..+. .....+||||||||||+|..||
T Consensus 332 ~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~Ns-------------------------- 385 (691)
T cd01380 332 VARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNS-------------------------- 385 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCC--------------------------
Confidence 999999999999999999999999997652 3356789999999999999988
Q ss_pred hhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHH
Q psy14295 380 WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLL 459 (750)
Q Consensus 380 ~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~ 459 (750)
T Consensus 386 -------------------------------------------------------------------------------- 385 (691)
T cd01380 386 -------------------------------------------------------------------------------- 385 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCC
Q psy14295 460 AAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPK 539 (750)
Q Consensus 460 ~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~ 539 (750)
|||||||||||+||+||++++|..||++|.+|||+|+.++|.||++|||||++ |.||+++|||||.+|+
T Consensus 386 ----------fEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~ 454 (691)
T cd01380 386 ----------FEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPK 454 (691)
T ss_pred ----------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999986 6999999999999999
Q ss_pred CchhhHHHHHHHHhC--CCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhhh
Q psy14295 540 GTDHTLLAKLHKTHG--LHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKNI 601 (750)
Q Consensus 540 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~~ 601 (750)
++|++|++|+...++ .|+.|.+|+.. +..|+|.||||+|.|+++ |||.+..+.+.+++..-
T Consensus 455 ~td~~f~~kl~~~~~~~~~~~~~~~~~~-~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~ 522 (691)
T cd01380 455 GSDESWAQKLYNKLPKKKNPHFEKPRFG-QTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASK 522 (691)
T ss_pred CChHHHHHHHHHHhcccCCCCccCCCCC-CCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCc
Confidence 999999999999998 79999888764 579999999999999999 78877777777776653
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.6e-122 Score=1076.01 Aligned_cols=461 Identities=44% Similarity=0.731 Sum_probs=434.4
Q ss_pred CcccCcEEEEcCCCCCC-CCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILP-IYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+|++||+||||+++| +|++++|+.|+++...++|||||+||++||++|.++++||||||| ||||||||| +
T Consensus 32 T~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiis----GESGaGKTe---~ 104 (674)
T cd01384 32 TYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILVS----GESGAGKTE---T 104 (674)
T ss_pred eeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEE----CCCCCCchh---H
Confidence 89999999999999999 999999999999999999999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
+|++|+|| +.+++... +....|+++|+++||||||||||||++|+||||||||++|+|+.+|.|+|
T Consensus 105 ~K~il~yL-------a~~~~~~~-------~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~G 170 (674)
T cd01384 105 TKMLMRYL-------AYMGGRAG-------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISG 170 (674)
T ss_pred HHHHHHHH-------HhhcCCCC-------cccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEE
Confidence 99999999 66654321 12346999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
|+|.+||||||||+.|++||||||||||||+| +++++++|+|.++.+|+||+++++...++.+|+++|++++.||+.||
T Consensus 171 a~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al~~lG 249 (674)
T cd01384 171 AAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVVG 249 (674)
T ss_pred EEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999 89999999999999999999999888889999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeec----------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCH
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKA----------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSR 297 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~----------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~ 297 (750)
|+++++.+||+||||||||||++|.. .++||++++|.++|+++++.+++|.+.+|+++
T Consensus 250 ~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~ 329 (674)
T cd01384 250 ISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEEVITKPLDP 329 (674)
T ss_pred CCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCH
Confidence 99999999999999999999999962 14599999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCC
Q psy14295 298 EQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGK 377 (750)
Q Consensus 298 ~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~ 377 (750)
++|.++||+|||+||++||+|||.+||.+|..+. ....+||||||||||+|..||
T Consensus 330 ~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~Ns------------------------ 384 (674)
T cd01384 330 DSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNS------------------------ 384 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCC------------------------
Confidence 9999999999999999999999999999997543 356799999999999999988
Q ss_pred cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHH
Q psy14295 378 HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFK 457 (750)
Q Consensus 378 ~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~ 457 (750)
T Consensus 385 -------------------------------------------------------------------------------- 384 (674)
T cd01384 385 -------------------------------------------------------------------------------- 384 (674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccC
Q psy14295 458 LLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKF 537 (750)
Q Consensus 458 ~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~ 537 (750)
|||||||||||+||++|++++|..||++|.+|||+|+.++|.||++|||||+++|.||+++|||||.+
T Consensus 385 ------------fEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~ 452 (674)
T cd01384 385 ------------FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 452 (674)
T ss_pred ------------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhhh
Q psy14295 538 PKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKNI 601 (750)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~~ 601 (750)
|+++|++|++|+.+.+++|+.|.+|+.. +..|+|.||||+|.|+++ |||.+..+.+.+++..-
T Consensus 453 p~~td~~f~~kl~~~~~~~~~~~~~~~~-~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~ 520 (674)
T cd01384 453 PKSTHETFAQKLYQTFKDHKRFEKPKLS-RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASN 520 (674)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCC-CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCc
Confidence 9999999999999999999999988864 579999999999999999 77777666666666553
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=2.4e-122 Score=1080.17 Aligned_cols=468 Identities=44% Similarity=0.693 Sum_probs=432.2
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|+||||||||+.+|+|++++++.|+++...++|||||+||+.||++|.++++||||||| ||||||||| ++
T Consensus 36 T~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIiiS----GESGAGKTe---s~ 108 (693)
T cd01377 36 TYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILIT----GESGAGKTE---NT 108 (693)
T ss_pred EeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEE----cCCCCCchH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++..+.. .........|+++|+++||||||||||||++|+||||||||++|+|+.+|.|+||
T Consensus 109 K~il~yL-------a~~~~~~~~~-~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga 180 (693)
T cd01377 109 KKVIQYL-------ASVAASSKKK-KQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGA 180 (693)
T ss_pred HHHHHHH-------HhhcCCCCcc-cccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEE
Confidence 9999999 6665432210 0011234579999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCc-ccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDA-SQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~-~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
+|.+|||||||||.|++||||||||||||+|++++++++|+|.+. .+|+||+++++. .++.+|+..|.+++.||..||
T Consensus 181 ~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~~-~~~~~d~~~f~~~~~al~~lG 259 (693)
T cd01377 181 DIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELT-IPGVDDAEEFKLTDEAFDILG 259 (693)
T ss_pred EEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCcc-CCCCcHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999987 899999988754 578899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhH
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQS 300 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A 300 (750)
|+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.+++|.+.+|+++++|
T Consensus 260 ~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A 339 (693)
T cd01377 260 FSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALLHPRIKVGREWVTKGQNVEQV 339 (693)
T ss_pred CCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhcceEEEECCeeEeeCCCHHHH
Confidence 99999999999999999999999964 25699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcch
Q psy14295 301 VDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSW 380 (750)
Q Consensus 301 ~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~ 380 (750)
.++||+|||+||++||+|||.+||.+|.++ .....+||||||||||+|+.||
T Consensus 340 ~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~Ns--------------------------- 391 (693)
T cd01377 340 SFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNS--------------------------- 391 (693)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCC---------------------------
Confidence 999999999999999999999999999655 3466899999999999999998
Q ss_pred hHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHH
Q psy14295 381 IEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLA 460 (750)
Q Consensus 381 ~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~ 460 (750)
T Consensus 392 -------------------------------------------------------------------------------- 391 (693)
T cd01377 392 -------------------------------------------------------------------------------- 391 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHhhchhhhhcchhhccCCC
Q psy14295 461 AVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQLNIMALIDEESKFPK 539 (750)
Q Consensus 461 ~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~~~~gi~~~l~~~~~~~~ 539 (750)
|||||||||||+||++|++++|+.||++|.+|||.|+.++| .||++|||||+++|.||+++|||||.+|+
T Consensus 392 ---------fEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~ 462 (693)
T cd01377 392 ---------FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPK 462 (693)
T ss_pred ---------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCC
Confidence 99999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhCCCCCc-cCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhhh
Q psy14295 540 GTDHTLLAKLHKTHGLHRNY-LKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKNI 601 (750)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~~ 601 (750)
++|++|++|++..++.|+.| ..++...+..|+|.||||.|.|+++ |||.+..+.+.+++..-
T Consensus 463 ~tD~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~ 530 (693)
T cd01377 463 ATDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSS 530 (693)
T ss_pred CCHHHHHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCc
Confidence 99999999999999988887 2333344679999999999999999 78877777777777653
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.4e-122 Score=1078.59 Aligned_cols=461 Identities=43% Similarity=0.730 Sum_probs=431.8
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCC-CCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKK-IGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~-~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+|++|||||||+++|+|++++++.|+++. ..++|||||+||++||++|.++++||||||| ||||||||| +
T Consensus 38 T~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiis----GESGAGKTe---t 110 (692)
T cd01385 38 TYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVIS----GESGSGKTE---S 110 (692)
T ss_pred EeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEe----cCCCCCchH---H
Confidence 8999999999999999999999999999887 7899999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
+|++|+|| +.+++... ....++++|+++||||||||||||++|+||||||||++|+|+.+|.|+|
T Consensus 111 ~K~il~yL-------~~~s~~~~--------~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~G 175 (692)
T cd01385 111 TNFLIHHL-------TALSQKGY--------AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRG 175 (692)
T ss_pred HHHHHHHH-------HHhccCCc--------cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEE
Confidence 99999999 65554321 1246999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
|+|++||||||||+.|++||||||||||||+|++++++.++.|.++.+|+||+++.+...++.+|..+|..++.||+.||
T Consensus 176 a~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG 255 (692)
T cd01385 176 AVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFERLKQAMEMVG 255 (692)
T ss_pred EEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999988999999988777778999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeecc----------------------ccCCChHHHHHHHhhceeccCCcEEEEeCCH
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKAA----------------------VIAVPKQPLIDALTRKTFFAQGETVISTLSR 297 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~~----------------------~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~ 297 (750)
|+++++++||+|||||||||||+|... ++||++++|.++|+++++.++||.+++|+++
T Consensus 256 ~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~ 335 (692)
T cd01385 256 FLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTVNETLILPYSL 335 (692)
T ss_pred CCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCCeEEecCCH
Confidence 999999999999999999999999631 4599999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC--CCccceeeecccccccccC-CCCCCCCCcchhhhHHHHHHHHh
Q psy14295 298 EQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKN--QARSAMGVLDIFGFENFNT-NSGESGAGKTESTKLILQYLAAI 374 (750)
Q Consensus 298 ~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~--~~~~~i~~ld~~gfe~~~~-~~~~sgag~~~~~~~~~~~~~~~ 374 (750)
++|.++||+|||+||++||+|||++||.+|.++.. ....+||||||||||+|.. ||
T Consensus 336 ~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~Ns--------------------- 394 (692)
T cd01385 336 SEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNS--------------------- 394 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCC---------------------
Confidence 99999999999999999999999999999975432 2357899999999999998 87
Q ss_pred cCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHH
Q psy14295 375 SGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWD 454 (750)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~ 454 (750)
T Consensus 395 -------------------------------------------------------------------------------- 394 (692)
T cd01385 395 -------------------------------------------------------------------------------- 394 (692)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhh
Q psy14295 455 VFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEE 534 (750)
Q Consensus 455 i~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~ 534 (750)
|||||||||||+||+||++++|+.||++|.+|||+|..++|.||++|||||+++|.||+++||||
T Consensus 395 ---------------fEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee 459 (692)
T cd01385 395 ---------------FEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEE 459 (692)
T ss_pred ---------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 535 SKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
|.+|+++|++|++|+++.++.|+.|.+|+.. ...|+|.||||.|.|+++ |||.+....+.+++..
T Consensus 460 ~~~p~~td~~~l~kl~~~~~~~~~~~~~~~~-~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S 529 (692)
T cd01385 460 SNFPHATSQTLLAKFNQQHKDNKYYEGPQVK-EPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGS 529 (692)
T ss_pred hcCCCCCHHHHHHHHHHHhCCCCCccCCCCC-CCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhC
Confidence 9999999999999999999999999888754 568999999999999999 7777776766666664
No 9
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=3.4e-122 Score=1073.72 Aligned_cols=453 Identities=42% Similarity=0.723 Sum_probs=428.4
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|+|++++++.|+++. .+|||||+||++||++|.++++||||||| ||||||||| ++
T Consensus 39 T~~G~iLiavNPy~~l~ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~~m~~~~~~QsIiis----GESGaGKTe---~~ 109 (677)
T cd01383 39 TKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS--NDSPHVYAIADTAYNEMMRDEVNQSIIIS----GESGAGKTE---TA 109 (677)
T ss_pred EEECCEEEEEcCCcCCCCCCHHHHHHhhCCC--CCCCCHHHHHHHHHHHHHHcCCCceEEEe----cCCCCCcch---HH
Confidence 8999999999999999999999999999764 47999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++. ..++++|+++||||||||||||++|+||||||||++|+|+.+|.|+||
T Consensus 110 K~i~~yL-------a~~~~~------------~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga 170 (677)
T cd01383 110 KIAMQYL-------ASLGGG------------SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGA 170 (677)
T ss_pred HHHHHHH-------HhhCCC------------CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEE
Confidence 9999999 555432 148999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|++||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||++++|...++.||+.+|..++.||+.|||
T Consensus 171 ~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~ 250 (677)
T cd01383 171 KIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIVHI 250 (677)
T ss_pred EEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSV 301 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~ 301 (750)
+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.++||.+.+++++++|.
T Consensus 251 ~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~ 330 (677)
T cd01383 251 SKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAI 330 (677)
T ss_pred CHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceEeecCCHHHHH
Confidence 9999999999999999999999952 246999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchh
Q psy14295 302 DVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWI 381 (750)
Q Consensus 302 ~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~ 381 (750)
++||+|||+||++||+|||.+||.+|..+......+||||||||||+|..||
T Consensus 331 ~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~Ns---------------------------- 382 (677)
T cd01383 331 DARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNS---------------------------- 382 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCC----------------------------
Confidence 9999999999999999999999999976544456799999999999999988
Q ss_pred HHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHH
Q psy14295 382 EQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAA 461 (750)
Q Consensus 382 ~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~ 461 (750)
T Consensus 383 -------------------------------------------------------------------------------- 382 (677)
T cd01383 383 -------------------------------------------------------------------------------- 382 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCCCc
Q psy14295 462 VLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGT 541 (750)
Q Consensus 462 ~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~ 541 (750)
|||||||||||+||+||++++|..||++|.+|||+|..++|.||++|||||+++|.||+++|||||.+|+++
T Consensus 383 --------fEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~t 454 (677)
T cd01383 383 --------FEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNAT 454 (677)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 542 DHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
|++|++|+++.++.|+.|..++ +..|+|.||||+|.|+++ |||.+..+.+.+++..
T Consensus 455 D~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S 515 (677)
T cd01383 455 DLTFANKLKQHLKTNSCFRGER---GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSC 515 (677)
T ss_pred HHHHHHHHHHHhCCCCCCCCCC---CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhC
Confidence 9999999999999999987665 468999999999999999 7887777777666654
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=4.1e-122 Score=1075.31 Aligned_cols=461 Identities=42% Similarity=0.698 Sum_probs=434.7
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++|||||||+++|+|++++|+.|+++...++|||||+||+.||++|+++++||||||| ||||||||| ++
T Consensus 31 T~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiis----GESGaGKTe---~~ 103 (674)
T cd01378 31 TYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVIIS----GESGAGKTE---AA 103 (674)
T ss_pred eccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEE----cCCCCCcch---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++... ....++++|+++||||||||||||++|+||||||||++|+|+.+|.|+||
T Consensus 104 K~il~yL-------~~~~~~~~--------~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga 168 (674)
T cd01378 104 KKIMQYI-------AAVSGGGQ--------KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGG 168 (674)
T ss_pred HHHHHHH-------HhcCCCCC--------ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeE
Confidence 9999999 66665432 12468999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|++||||||||+.+++||||||||||||+|++++++++|+|.++.+|+||+++++..+++.+|...|.++++||+.|||
T Consensus 169 ~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~ 248 (674)
T cd01378 169 KITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVIGF 248 (674)
T ss_pred EEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec------------------cccCCChHHHHHHHhhceeccCC----cEEEEeCCHh
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA------------------AVIAVPKQPLIDALTRKTFFAQG----ETVISTLSRE 298 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~------------------~~~gv~~~~L~~~L~~~~~~~~~----e~~~~~~~~~ 298 (750)
+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.++| |.+++|++++
T Consensus 249 s~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~ 328 (674)
T cd01378 249 SEDEQDEIFRIVAAILHLGNVQFAENGDGAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGEVYDVPLNVE 328 (674)
T ss_pred CHHHHHHHHHHHHHHHhhcceEEeccCCCccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCceeEEecCCHH
Confidence 9999999999999999999999962 25799999999999999999988 9999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCc
Q psy14295 299 QSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKH 378 (750)
Q Consensus 299 ~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~ 378 (750)
+|.++||+|||+||++||+|||.+||++|..+......+||||||||||+|+.||
T Consensus 329 ~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~Ns------------------------- 383 (674)
T cd01378 329 QAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNS------------------------- 383 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEeccccccccccc-------------------------
Confidence 9999999999999999999999999999976534566799999999999999988
Q ss_pred chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHH
Q psy14295 379 SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKL 458 (750)
Q Consensus 379 ~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~ 458 (750)
T Consensus 384 -------------------------------------------------------------------------------- 383 (674)
T cd01378 384 -------------------------------------------------------------------------------- 383 (674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHh-hchhhhhcchhhccC
Q psy14295 459 LAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAI-KQLNIMALIDEESKF 537 (750)
Q Consensus 459 ~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~-~~~gi~~~l~~~~~~ 537 (750)
|||||||||||+||+||++++|..||++|.+|||+|..++|.||++|||||++ +|.||+++|||||.+
T Consensus 384 -----------fEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~ 452 (674)
T cd01378 384 -----------FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCAT 452 (674)
T ss_pred -----------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred C-CCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 538 P-KGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 538 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
| +++|++|++|+++.++.|+.+.+++. .+..|+|.||||+|.|+++ |||.+......+++..
T Consensus 453 p~~~tD~~~~~kl~~~~~~~~~~~~~~~-~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S 520 (674)
T cd01378 453 PHEGTDQTFLEKLNKKFSSHPHSDHFSS-GSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSS 520 (674)
T ss_pred CCCCChHHHHHHHHHHhccCCCCCCCCC-CCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhC
Confidence 9 99999999999999999988766654 4679999999999999999 7787776666666654
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=6.3e-122 Score=1072.86 Aligned_cols=456 Identities=43% Similarity=0.741 Sum_probs=429.4
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++|||||||+.+|+|+++.++.|+++...++|||||+||+.||++|..+++||||||| ||||||||| ++
T Consensus 32 T~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiis----GESGaGKTe---~~ 104 (677)
T cd01387 32 TYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVIIS----GESGSGKTE---AT 104 (677)
T ss_pred EeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEE----cCCCCCeeh---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++.. ...++++|+++||||||||||||++|+||||||||++|+|+ +|.|+||
T Consensus 105 k~il~yl-------~~~~~~~----------~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~-~g~i~Ga 166 (677)
T cd01387 105 KLILRYL-------AAMNQGG----------SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGA 166 (677)
T ss_pred HHHHHHH-------HhhcCCC----------cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-CCcEeEE
Confidence 9999999 5554322 23589999999999999999999999999999999999995 7999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|++||||||||+.|++||||||||||||+|+++++|.+|+|.++.+|+||+++++..+++.+|+.+|..++.||+.|||
T Consensus 167 ~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~ 246 (677)
T cd01387 167 ITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVLGF 246 (677)
T ss_pred EEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999988777788999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec---------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhh
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA---------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQ 299 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~---------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~ 299 (750)
+++++++||+||||||||||++|.. .++||++++|.++||.+++.++||.+.+|+++++
T Consensus 247 ~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~ 326 (677)
T cd01387 247 SSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIFTPLTVES 326 (677)
T ss_pred CHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEeccCCHHH
Confidence 9999999999999999999999963 1469999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcc
Q psy14295 300 SVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHS 379 (750)
Q Consensus 300 A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~ 379 (750)
|.++||+|||+||++||+|||.+||.+|... ....+||||||||||+|..||
T Consensus 327 a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~Ns-------------------------- 378 (677)
T cd01387 327 AVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNS-------------------------- 378 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCC--------------------------
Confidence 9999999999999999999999999999753 345789999999999999988
Q ss_pred hhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHH
Q psy14295 380 WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLL 459 (750)
Q Consensus 380 ~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~ 459 (750)
T Consensus 379 -------------------------------------------------------------------------------- 378 (677)
T cd01387 379 -------------------------------------------------------------------------------- 378 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCC
Q psy14295 460 AAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPK 539 (750)
Q Consensus 460 ~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~ 539 (750)
|||||||||||+||++|++++|+.||++|.+|||+|..++|.||++|||||+++|.||+++|||||.+|+
T Consensus 379 ----------fEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~ 448 (677)
T cd01387 379 ----------FEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQ 448 (677)
T ss_pred ----------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 540 GTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
++|++|++|++..++.|+.|.+|+.. ...|+|.||||+|.|+++ |||.+..+.+.+++..
T Consensus 449 ~td~~~~~kl~~~~~~~~~~~~~~~~-~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S 513 (677)
T cd01387 449 ATDHTFLQKCHYHHGANPLYSKPKMP-LPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSS 513 (677)
T ss_pred CchHHHHHHHHHhccCCccccCCCCC-CCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhC
Confidence 99999999999999999999888754 468999999999999999 7777666666666543
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=5e-120 Score=1062.67 Aligned_cols=457 Identities=39% Similarity=0.677 Sum_probs=424.2
Q ss_pred CcccCcEEEEcCCCCCC-CCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILP-IYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+|++||+||||+++| +|++++++.|+++...++|||||+||+.||++|.++++||||||| ||||||||| +
T Consensus 35 T~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiis----GESGaGKTe---s 107 (717)
T cd01382 35 TYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVS----GESGAGKTE---N 107 (717)
T ss_pred EeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhcCCCCeEEEe----cCCCCChhH---H
Confidence 89999999999999998 999999999999999999999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
+|++|+|| +..++.. ..|+++|+++||||||||||||++|+||||||||++|+|+.+|.|+|
T Consensus 108 ~K~il~yL-------a~~~~~~-----------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~G 169 (717)
T cd01382 108 TKFVLRYL-------TESYGSG-----------QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVG 169 (717)
T ss_pred HHHHHHHH-------HhhccCC-----------ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCEeE
Confidence 99999999 5544322 35999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCC-----------------------
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGS----------------------- 216 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~----------------------- 216 (750)
|+|++||||||||+.+++||||||||||||+|+++++++.|+|.++.+|+||+++..
T Consensus 170 a~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 249 (717)
T cd01382 170 GFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNRKSPEHLK 249 (717)
T ss_pred EEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999997531
Q ss_pred ---cccCCcchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhCCceeec----------------------cccCCC
Q psy14295 217 ---ITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNIKYKA----------------------AVIAVP 271 (750)
Q Consensus 217 ---~~~~~~~d~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGni~f~~----------------------~~~gv~ 271 (750)
...+..+|...|.+|+.||++|||+++++.+||+|||||||||||+|.. .++||+
T Consensus 250 ~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~ 329 (717)
T cd01382 250 KGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLD 329 (717)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCC
Confidence 1235678999999999999999999999999999999999999999962 246999
Q ss_pred hHHHHHHHhhceec-----cCCcEEEEeCCHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeeccccc
Q psy14295 272 KQPLIDALTRKTFF-----AQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGF 346 (750)
Q Consensus 272 ~~~L~~~L~~~~~~-----~~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gf 346 (750)
+++|.++|+++++. ++|+.+.+|++++||.++||+|||+||++||+|||.+||.+|... ....+|||||||||
T Consensus 330 ~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~--~~~~~IgiLDIfGF 407 (717)
T cd01382 330 QDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE--TSSNFIGVLDIAGF 407 (717)
T ss_pred HHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCcEEEEEecccc
Confidence 99999999999987 789999999999999999999999999999999999999999643 35678999999999
Q ss_pred ccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccc
Q psy14295 347 ENFNTNSGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITC 426 (750)
Q Consensus 347 e~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~ 426 (750)
|+|+.||
T Consensus 408 E~f~~Ns------------------------------------------------------------------------- 414 (717)
T cd01382 408 EYFEHNS------------------------------------------------------------------------- 414 (717)
T ss_pred ccCCCCC-------------------------------------------------------------------------
Confidence 9999988
Q ss_pred cCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccc
Q psy14295 427 EGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQ 506 (750)
Q Consensus 427 ~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~ 506 (750)
|||||||||||+||++|++++|..||++|.+|||+|.
T Consensus 415 -------------------------------------------fEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~ 451 (717)
T cd01382 415 -------------------------------------------FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVN 451 (717)
T ss_pred -------------------------------------------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCC---------CCCCeeeecccc
Q psy14295 507 HIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSD---------INTSFGLNHFAG 577 (750)
Q Consensus 507 ~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~F~I~H~aG 577 (750)
.++|.||++|||||+++|.||+++|||||.+|+++|++|++|++..+++|+.|..|+.+ .+..|+|.||||
T Consensus 452 ~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG 531 (717)
T cd01382 452 EVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAG 531 (717)
T ss_pred cccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecce
Confidence 99999999999999999999999999999999999999999999999998888766532 135799999999
Q ss_pred eEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 578 VVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 578 ~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
+|.|+++ |||.+......+++..
T Consensus 532 ~V~Y~v~gfleKNkD~l~~~~~~ll~~S 559 (717)
T cd01382 532 AVCYETTQFVEKNNDALHMSLESLICES 559 (717)
T ss_pred eEeecCCChHHhcCccccHHHHHHHHhC
Confidence 9999999 7777766666666654
No 13
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.3e-119 Score=1048.48 Aligned_cols=458 Identities=41% Similarity=0.733 Sum_probs=423.6
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|+|++++++.|+++...++|||||++|+.||+.|...++||||||| ||||||||+ ++
T Consensus 31 T~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiis----GESGsGKTe---t~ 103 (653)
T cd01379 31 TYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVIS----GESGSGKTE---SA 103 (653)
T ss_pred EeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCceEEEe----cCCCCCchH---HH
Confidence 89999999999999999999999999999989999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++.. ...++++|+++||||||||||||++|+||||||||++|+|+.+|.|+||
T Consensus 104 K~l~~yL-------~~~~~~~----------~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga 166 (653)
T cd01379 104 HLLVQQL-------TVLGKAN----------NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGA 166 (653)
T ss_pred HHHHHHH-------HHhcCCC----------CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEE
Confidence 9999999 5443321 2368999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHH-HhccCCCcccCccccCCCCcccCCc----chHHHHHHHHHHH
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEK-MALELTDASQYRYLTGGGSITCEGR----DDAAEFADIRSAM 235 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~-~~l~L~~~~~~~yl~~~~~~~~~~~----~d~~~f~~l~~Al 235 (750)
+|++||||||||+.|++||||||||||||+|++++++ ..|.|.++.+|+||+++.+..+++. +|...|..++.||
T Consensus 167 ~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~~~~~al 246 (653)
T cd01379 167 RISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFEQIEQCF 246 (653)
T ss_pred EEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876 7899999999999998876544443 3578999999999
Q ss_pred hhcCCChhhHHHHHHHHHHHHHhCCceeec----------------------cccCCChHHHHHHHhhceeccCCcEEEE
Q psy14295 236 KVLQFSDEDIWDVFKLLAAVLHTGNIKYKA----------------------AVIAVPKQPLIDALTRKTFFAQGETVIS 293 (750)
Q Consensus 236 ~~lG~~~~e~~~I~~iLaaILhLGni~f~~----------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~ 293 (750)
..|||++++++.||+|||||||||||+|.. .++||+.++|.++|+++++.++|+.+++
T Consensus 247 ~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~i~~ 326 (653)
T cd01379 247 RVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTRGETIVR 326 (653)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceeee
Confidence 999999999999999999999999999952 2469999999999999999999999999
Q ss_pred eCCHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC----CCccceeeecccccccccCCCCCCCCCcchhhhHHHH
Q psy14295 294 TLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKN----QARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQ 369 (750)
Q Consensus 294 ~~~~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~----~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~ 369 (750)
|+++++|.++||+|||+||++||+|||.+||.+|.++.. ....+||||||||||+|..||
T Consensus 327 ~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~Ns---------------- 390 (653)
T cd01379 327 HNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNS---------------- 390 (653)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCC----------------
Confidence 999999999999999999999999999999999976532 134689999999999999988
Q ss_pred HHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCCh
Q psy14295 370 YLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSD 449 (750)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~ 449 (750)
T Consensus 391 -------------------------------------------------------------------------------- 390 (653)
T cd01379 391 -------------------------------------------------------------------------------- 390 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhh
Q psy14295 450 EDIWDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMA 529 (750)
Q Consensus 450 ~e~~~i~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~ 529 (750)
|||||||||||+||+||++++|..||++|.+|||+|..++|.||++|||||+.+|.||++
T Consensus 391 --------------------fEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~ 450 (653)
T cd01379 391 --------------------FEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLA 450 (653)
T ss_pred --------------------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 530 LIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
+|||||.+|+|+|++|++|+...++ ++.|.+|+.. +..|+|.||||+|.|+++ |||.+..+.+.+++..
T Consensus 451 lLdee~~~~~~td~~~~~kl~~~~~-~~~~~~~~~~-~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S 524 (653)
T cd01379 451 LLDEESRFPQATDQTLVEKFEDNLK-SKFFWRPKRV-ELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS 524 (653)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcC-CCCccCCCCC-CCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC
Confidence 9999999999999999999999885 4667777654 568999999999999999 7887777766677654
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.6e-119 Score=1057.63 Aligned_cols=461 Identities=50% Similarity=0.825 Sum_probs=437.0
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+++|+|++++++.|+++...++|||||++|++||++|+++++||||||| ||||||||| ++
T Consensus 37 T~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiis----GESGaGKTe---~~ 109 (677)
T smart00242 37 TYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIIS----GESGAGKTE---NT 109 (677)
T ss_pred ccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEe----cCCCCcchH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++... ....|+++|+++||||||||||||++|+||||||||++|+|+.+|.|+||
T Consensus 110 k~il~yl-------~~~~~~~~--------~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga 174 (677)
T smart00242 110 KKIMQYL-------AAVSGSNT--------SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGA 174 (677)
T ss_pred HHHHHHH-------HhhcCCCC--------ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcEeEE
Confidence 9999999 66664321 23469999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|.+||||||||+.+++||||||||||||+|++++++++|+|.++.+|+||+++++...+..+|..+|.+++.||+.|||
T Consensus 175 ~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~ 254 (677)
T smart00242 175 KIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFKETLNAMRVLGF 254 (677)
T ss_pred EEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec--------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA--------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQS 300 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~--------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A 300 (750)
+++++.+||+|||||||||||+|.. .++||+.++|.++|+++++.++||.+++++++++|
T Consensus 255 ~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a 334 (677)
T smart00242 255 SEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQA 334 (677)
T ss_pred CHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHH
Confidence 9999999999999999999999962 25699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcch
Q psy14295 301 VDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSW 380 (750)
Q Consensus 301 ~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~ 380 (750)
.++||+|||+||++||+|||.+||.+|..+. ....+||||||||||+|..||
T Consensus 335 ~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~Ns--------------------------- 386 (677)
T smart00242 335 LDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNS--------------------------- 386 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCC---------------------------
Confidence 9999999999999999999999999997643 466799999999999999987
Q ss_pred hHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHH
Q psy14295 381 IEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLA 460 (750)
Q Consensus 381 ~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~ 460 (750)
T Consensus 387 -------------------------------------------------------------------------------- 386 (677)
T smart00242 387 -------------------------------------------------------------------------------- 386 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCCC
Q psy14295 461 AVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKG 540 (750)
Q Consensus 461 ~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~ 540 (750)
|||||||||||+||+||++++|..|+++|.+|||.|+.++|.||++|||||+++|.||+++|||||.+|++
T Consensus 387 ---------fEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~ 457 (677)
T smart00242 387 ---------FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKA 457 (677)
T ss_pred ---------HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 541 TDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
+|++|++|+.+.++.|++|.+|+...+..|+|.||||+|.|+++ |||......+.+++..
T Consensus 458 td~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S 522 (677)
T smart00242 458 TDQTFLEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSS 522 (677)
T ss_pred CHHHHHHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhC
Confidence 99999999999999999999987666789999999999999999 7777777766666654
No 15
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.7e-118 Score=1051.43 Aligned_cols=459 Identities=47% Similarity=0.803 Sum_probs=433.7
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+++|+|+++.+++|+++...++|||||++|++||++|+++++||||||| ||||||||| ++
T Consensus 31 T~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiis----GESGaGKTe---~~ 103 (679)
T cd00124 31 TYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIIIS----GESGAGKTE---NT 103 (679)
T ss_pred EeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEe----cCCCCCchH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++.. ...++++|+++||||||||||||++|+||||||||++|+|+.+|.|+||
T Consensus 104 k~il~yl-------~~~~~~~----------~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga 166 (679)
T cd00124 104 KLIMKYL-------ASLAGSN----------DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGA 166 (679)
T ss_pred HHHHHHH-------HhccCCC----------cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEE
Confidence 9999999 6665432 2359999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|++||||||||+.+++||||||||||||+|++++++++|+|.++.+|+||+++.+...++.+|.++|.+++.||+.|||
T Consensus 167 ~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~ 246 (679)
T cd00124 167 KITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLGF 246 (679)
T ss_pred EEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec---------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhh
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA---------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQ 299 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~---------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~ 299 (750)
+++++.+||+||||||||||++|.. .++||+.++|.++|+++++.++||.+++++++++
T Consensus 247 ~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 326 (679)
T cd00124 247 SEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITIPLTKEE 326 (679)
T ss_pred CHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEecCCHHH
Confidence 9999999999999999999999962 2569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcc
Q psy14295 300 SVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHS 379 (750)
Q Consensus 300 A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~ 379 (750)
|.++||+|||+||++||+|||.+||.+|..+ .....+||||||||||+|..||
T Consensus 327 a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~Ns-------------------------- 379 (679)
T cd00124 327 AVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNS-------------------------- 379 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCC--------------------------
Confidence 9999999999999999999999999999764 3456799999999999999988
Q ss_pred hhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHH
Q psy14295 380 WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLL 459 (750)
Q Consensus 380 ~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~ 459 (750)
T Consensus 380 -------------------------------------------------------------------------------- 379 (679)
T cd00124 380 -------------------------------------------------------------------------------- 379 (679)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCC
Q psy14295 460 AAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPK 539 (750)
Q Consensus 460 ~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~ 539 (750)
|||||||||||+||++|++++|..|+++|.+|||.|+.++|.||++|||||+++|.||+++|||||.+|+
T Consensus 380 ----------fEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~ 449 (679)
T cd00124 380 ----------FEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPK 449 (679)
T ss_pred ----------HHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 540 GTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
++|++|++++.+.++.|+.|..++...+..|+|.||||.|.|+++ |||.+......+++..
T Consensus 450 ~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S 515 (679)
T cd00124 450 GTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSS 515 (679)
T ss_pred CCHHHHHHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhC
Confidence 999999999999999999876665556789999999999999999 7777666666666554
No 16
>KOG0162|consensus
Probab=100.00 E-value=1.7e-117 Score=972.94 Aligned_cols=463 Identities=37% Similarity=0.660 Sum_probs=432.7
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|+|++..|.+|+++...+.||||||+|+++|++|+...+||||||| ||||||||+ ++
T Consensus 49 TYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY~nM~~~~EnQCVIIS----GESGAGKT~---aA 121 (1106)
T KOG0162|consen 49 TYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMYRNMKIDNENQCVIIS----GESGAGKTV---AA 121 (1106)
T ss_pred EEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHHHHhhhccccceEEEe----cCCCCCchH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|.+|+|+ +.+|+... +-.+|.+-||++||+|||||||||+||+||||||||++++|+..|..+|+
T Consensus 122 K~IM~YI-------s~vS~~g~--------kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP~gg 186 (1106)
T KOG0162|consen 122 KRIMQYI-------SRVSGGGE--------KVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEPDGG 186 (1106)
T ss_pred HHHHHHH-------HHhccCCc--------chhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCcCcc
Confidence 9999999 77774322 23468889999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|..|||||+|||.|.++||||||||||+.|++.+.|..+++..++.|.|++.++|..+++.||..+|+.+..||+++|+
T Consensus 187 kisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~AM~vIGi 266 (1106)
T KOG0162|consen 187 KISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQETLHAMKVIGI 266 (1106)
T ss_pred hhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHHHHHHHheeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec-----------------cccCCChHHHHHHHhhceecc----CCcEEEEeCCHhh
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA-----------------AVIAVPKQPLIDALTRKTFFA----QGETVISTLSREQ 299 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~-----------------~~~gv~~~~L~~~L~~~~~~~----~~e~~~~~~~~~~ 299 (750)
.++||+.||++||+|||||||.|.. -++||+.+.|.+.||.+.+.. +.|.+..||+++|
T Consensus 267 ~~~eQ~~v~rmva~IL~lGNIsF~Ee~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~Q 346 (1106)
T KOG0162|consen 267 NQEEQDEVLRMVAGILHLGNISFIEEGNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQ 346 (1106)
T ss_pred ChHHHHHHHHHHHHHHhccceeEEeeCCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccccceeEEecccHHH
Confidence 9999999999999999999999973 246999999999999998764 3488999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcc
Q psy14295 300 SVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHS 379 (750)
Q Consensus 300 A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~ 379 (750)
|...||||||+||.+||+|||++||.++.........+||||||+|||.|+.|+
T Consensus 347 A~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~-------------------------- 400 (1106)
T KOG0162|consen 347 ASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNG-------------------------- 400 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCC--------------------------
Confidence 999999999999999999999999999976555567899999999999999998
Q ss_pred hhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHH
Q psy14295 380 WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLL 459 (750)
Q Consensus 380 ~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~ 459 (750)
T Consensus 401 -------------------------------------------------------------------------------- 400 (1106)
T KOG0162|consen 401 -------------------------------------------------------------------------------- 400 (1106)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHh-hchhhhhcchhhccCC
Q psy14295 460 AAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAI-KQLNIMALIDEESKFP 538 (750)
Q Consensus 460 ~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~-~~~gi~~~l~~~~~~~ 538 (750)
|||+||||.||+||+-|++-+++.|||+|.+|||.|.+|.|.||.-++|||+. .|.||+++||+.|+-+
T Consensus 401 ----------FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~ 470 (1106)
T KOG0162|consen 401 ----------FEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATA 470 (1106)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999986 5899999999999854
Q ss_pred ----CCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhhhhhHH
Q psy14295 539 ----KGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKNIRGWV 605 (750)
Q Consensus 539 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~~Rg~~ 605 (750)
.|.|..|+++|...++.|+.|.. +...|.|.||||.|+||.+ +||.++.+.+.+||..-+.|+
T Consensus 471 Ha~~~~aDqa~~qrLn~~~~s~phF~~----~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl 542 (1106)
T KOG0162|consen 471 HADSEGADQALLQRLNKLFGSHPHFES----RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFL 542 (1106)
T ss_pred ccccchhHHHHHHHHHHHhcCCCcccc----ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHH
Confidence 45699999999999999999864 3468999999999999999 888888888888888754433
No 17
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=4.4e-116 Score=1039.84 Aligned_cols=468 Identities=50% Similarity=0.823 Sum_probs=410.5
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+++|+|+++++..|+++...++|||||++|++||++|+++++||||||| ||||||||| ++
T Consensus 30 T~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~Iiis----GeSGsGKTe---~~ 102 (689)
T PF00063_consen 30 TYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIIIS----GESGSGKTE---TS 102 (689)
T ss_dssp EEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEEE----ESTTSSHHH---HH
T ss_pred ccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhcccccccccccccceeec----ccccccccc---ch
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.++...+. ....+++++|++++|||||||||+|++|+||||||||++|+|+.+|.++||
T Consensus 103 k~il~~L-------~~~~~~~~~------~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~ 169 (689)
T PF00063_consen 103 KLILRYL-------ASLSSSSSS------SKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGA 169 (689)
T ss_dssp HHHHHHH-------HHHSSSSSS------TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEE
T ss_pred HHHHHHH-------hhhcccccc------cccccccceEEeccchhhhhcccccccCCcccccceEEEEEeccccccccc
Confidence 9999999 666654321 234579999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|.+||||||||+.+++||||||||||||+|++++++++|+|.++.+|+||+++++...++.+|..+|+++++||++|||
T Consensus 170 ~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~al~~lg~ 249 (689)
T PF00063_consen 170 KIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQELKDALKTLGF 249 (689)
T ss_dssp EEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHHHHHHHHTT-
T ss_pred ceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhhhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSV 301 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~ 301 (750)
+++++.+||+|||||||||||+|.. .++||++++|..+|+++++.+++|.+++++++++|.
T Consensus 250 ~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~ 329 (689)
T PF00063_consen 250 SDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVTKPLSVEQAS 329 (689)
T ss_dssp -HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHH
T ss_pred chhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccccccchhhhh
Confidence 9999999999999999999999973 356999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchh
Q psy14295 302 DVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWI 381 (750)
Q Consensus 302 ~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~ 381 (750)
++||+|||+||++||+|||.+||.+|.++......+||||||||||++..|+
T Consensus 330 ~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~---------------------------- 381 (689)
T PF00063_consen 330 DARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNS---------------------------- 381 (689)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-----------------------------
T ss_pred hhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccc----------------------------
Confidence 9999999999999999999999999987654567899999999999998887
Q ss_pred HHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHH
Q psy14295 382 EQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAA 461 (750)
Q Consensus 382 ~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~ 461 (750)
T Consensus 382 -------------------------------------------------------------------------------- 381 (689)
T PF00063_consen 382 -------------------------------------------------------------------------------- 381 (689)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHhhchhhhhcchhhccCCCC
Q psy14295 462 VLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQLNIMALIDEESKFPKG 540 (750)
Q Consensus 462 ~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~~~~gi~~~l~~~~~~~~~ 540 (750)
|||||||||||+||++|++++|..|+++|.+|||.|+.++| .||.+|||||+++|.||+++|||||.+|++
T Consensus 382 --------fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~ 453 (689)
T PF00063_consen 382 --------FEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRG 453 (689)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS
T ss_pred --------cccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred chhhHHHHHHHHh-CCCCCccCCC---CCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhhhhhH
Q psy14295 541 TDHTLLAKLHKTH-GLHRNYLKPK---SDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKNIRGW 604 (750)
Q Consensus 541 ~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~~Rg~ 604 (750)
+|++|++++...+ +.++.|.+|+ ...+..|+|.||||.|.||++ +||.+..+.+.+++.....+
T Consensus 454 sd~~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~ 526 (689)
T PF00063_consen 454 SDESFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSF 526 (689)
T ss_dssp -HHHHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHH
T ss_pred hhhHHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcc
Confidence 9999999999999 8889987774 245789999999999999999 67777777777777654433
No 18
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.5e-115 Score=1025.05 Aligned_cols=466 Identities=25% Similarity=0.392 Sum_probs=405.9
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++|||||||+.+|+|++++++.|+++...++|||||+||+.||++|.++++||||||| ||||||||| ++
T Consensus 31 T~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiiS----GESGAGKTe---~t 103 (767)
T cd01386 31 TCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIFL----GRSGAGKTT---SC 103 (767)
T ss_pred EeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEe----cCCCCCcHH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++..+. ....++|+++||||||||||||++|+||||||||++|+|+..|.|+||
T Consensus 104 K~i~~yl-------a~~~~~~~~---------~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga 167 (767)
T cd01386 104 KHALEYL-------ALAAGSVDG---------RVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASA 167 (767)
T ss_pred HHHHHHH-------HhccCCCCc---------ccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEE
Confidence 9999999 666543221 112467999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccC-CCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTG-GGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~-~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
+|++|||||||||.|++||||||||||||+|++++++++|+|.+...+.+... ..+.+.++.+|++.|..++.||+.||
T Consensus 168 ~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~Al~~lG 247 (767)
T cd01386 168 SLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVLG 247 (767)
T ss_pred EEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999997655333322 22334566889999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeec-----------------cccCCChHHHHHHHhhceeccCCc-------------
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKA-----------------AVIAVPKQPLIDALTRKTFFAQGE------------- 289 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~-----------------~~~gv~~~~L~~~L~~~~~~~~~e------------- 289 (750)
|+++++.+||+||||||||||++|.. .+|||+.++|.++|+++++..+++
T Consensus 248 fs~~e~~~If~iLaaILhLGNi~f~~~~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~ 327 (767)
T cd01386 248 ISEGEQRAIWRVLAAIYHLGAAGATKVAGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTGPQRPGLSD 327 (767)
T ss_pred CCHHHHHHHHHHHHHHHhccCceeeecCCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecccccccccc
Confidence 99999999999999999999999963 356999999999999887655533
Q ss_pred EEEEeCCHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHH
Q psy14295 290 TVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQ 369 (750)
Q Consensus 290 ~~~~~~~~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~ 369 (750)
.+..++++++|.++||+|||+||++||+|||.+||.+|..+. ....+||||||||||+|+.|+...
T Consensus 328 ~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~------------- 393 (767)
T cd01386 328 TETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDR------------- 393 (767)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccC-------------
Confidence 233457889999999999999999999999999999997653 345789999999999998753100
Q ss_pred HHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCCh
Q psy14295 370 YLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSD 449 (750)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~ 449 (750)
T Consensus 394 -------------------------------------------------------------------------------- 393 (767)
T cd01386 394 -------------------------------------------------------------------------------- 393 (767)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHhhc----
Q psy14295 450 EDIWDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQ---- 524 (750)
Q Consensus 450 ~e~~~i~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~~~---- 524 (750)
.|+|||||||||||+||++|++++|+.||++|.+|||+|+.+.+ .||++|||||+++|
T Consensus 394 -----------------~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~ 456 (767)
T cd01386 394 -----------------AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVV 456 (767)
T ss_pred -----------------CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhccccccc
Confidence 12399999999999999999999999999999999999986554 78999999999865
Q ss_pred ----------hhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCC-----CCCCCCeeeecccc--eEEeecc---
Q psy14295 525 ----------LNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPK-----SDINTSFGLNHFAG--VVFYDTR--- 584 (750)
Q Consensus 525 ----------~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~F~I~H~aG--~V~Yd~~--- 584 (750)
.||+++|||||.+|+++|++|++|+++.++.|+.|.++. ......|+|.|||| +|.|+++
T Consensus 457 ~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfl 536 (767)
T cd01386 457 VPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWL 536 (767)
T ss_pred ccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHH
Confidence 499999999999999999999999999998888776522 12346899999999 5999999
Q ss_pred --cchhhh-hhHHHhhhhh
Q psy14295 585 --ERDRVL-TRNILVLQKN 600 (750)
Q Consensus 585 --~R~~~l-~~a~v~IQ~~ 600 (750)
|||... .+.+.+++..
T Consensus 537 eKNkD~~~~~~~~~ll~~S 555 (767)
T cd01386 537 RRAKPNPAALNAPQLLQDS 555 (767)
T ss_pred HhcCCCCChHHHHHHHHhC
Confidence 666543 4555555554
No 19
>KOG0163|consensus
Probab=100.00 E-value=3.3e-113 Score=939.62 Aligned_cols=441 Identities=41% Similarity=0.700 Sum_probs=409.7
Q ss_pred CcccCcEEEEcCCCCCC-CCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILP-IYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+.+|||+||||..++ +|+++.++.|+++..+.+|||||+||+.|||.|...+.+||||+| ||||||||| +
T Consensus 88 tYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVS----GESGAGKTE---s 160 (1259)
T KOG0163|consen 88 TYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVS----GESGAGKTE---S 160 (1259)
T ss_pred hhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEe----cCCCCCcch---h
Confidence 89999999999999999 999999999999999999999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
+|.+++|| +.--++ ...|+++|+++||||||||||||.+|+||||||||++++|+..|.++|
T Consensus 161 tK~vLrYL-------ces~gs-----------ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvG 222 (1259)
T KOG0163|consen 161 TKAVLRYL-------CESWGS-----------AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVG 222 (1259)
T ss_pred HHHHHHHH-------HhccCC-----------CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceec
Confidence 99999999 322111 245999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCC------------------------
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGG------------------------ 215 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~------------------------ 215 (750)
+=+..||||||||+.|+.+||||||||||+||+++++++.|+|.+|++|+||+.+-
T Consensus 223 GyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~ 302 (1259)
T KOG0163|consen 223 GYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQ 302 (1259)
T ss_pred hhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccc
Confidence 99999999999999999999999999999999999999999999999999998431
Q ss_pred --CcccCCcchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhCCceeec-----------------------cccCC
Q psy14295 216 --SITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNIKYKA-----------------------AVIAV 270 (750)
Q Consensus 216 --~~~~~~~~d~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGni~f~~-----------------------~~~gv 270 (750)
....+-.||-.+|..+..||+.+|++++|...||+++|||||||||+|.. .++|+
T Consensus 303 ~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGl 382 (1259)
T KOG0163|consen 303 KGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGL 382 (1259)
T ss_pred cCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCC
Confidence 01112357899999999999999999999999999999999999999973 24699
Q ss_pred ChHHHHHHHhhceecc-----CCcEEEEeCCHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccc
Q psy14295 271 PKQPLIDALTRKTFFA-----QGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFG 345 (750)
Q Consensus 271 ~~~~L~~~L~~~~~~~-----~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~g 345 (750)
+.++|...|+.+.+.+ +|..|.+|+.+.+|..+||||||++|++||+|||.+||.++- -..+..+||+|||.|
T Consensus 383 d~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiP--Fe~St~fiGVLDiAG 460 (1259)
T KOG0163|consen 383 DQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIP--FEKSTFFIGVLDIAG 460 (1259)
T ss_pred CHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccc--cccccceeEEEeecc
Confidence 9999999999987753 467899999999999999999999999999999999999983 223567999999999
Q ss_pred cccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCccc
Q psy14295 346 FENFNTNSGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSIT 425 (750)
Q Consensus 346 fe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~ 425 (750)
||-|.+||
T Consensus 461 FEyf~~NS------------------------------------------------------------------------ 468 (1259)
T KOG0163|consen 461 FEYFAVNS------------------------------------------------------------------------ 468 (1259)
T ss_pred ceeeeccc------------------------------------------------------------------------
Confidence 99999998
Q ss_pred ccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhcccc
Q psy14295 426 CEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINW 505 (750)
Q Consensus 426 ~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~ 505 (750)
|||||||||||+||+|||+++++.|||.|..||+..
T Consensus 469 --------------------------------------------FEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv 504 (1259)
T KOG0163|consen 469 --------------------------------------------FEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNV 504 (1259)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999
Q ss_pred ccccccChHHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCC---------CCCCeeeeccc
Q psy14295 506 QHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSD---------INTSFGLNHFA 576 (750)
Q Consensus 506 ~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~F~I~H~a 576 (750)
++|.|+||++|||||+.+..||+.+||||..+|+.+|..|-.+.+..+++|-.+..|+.+ .+.-|.|.|||
T Consensus 505 ~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfA 584 (1259)
T KOG0163|consen 505 PEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFA 584 (1259)
T ss_pred CceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecc
Confidence 999999999999999999999999999999999999999999999999999888877654 24589999999
Q ss_pred ceEEeecc
Q psy14295 577 GVVFYDTR 584 (750)
Q Consensus 577 G~V~Yd~~ 584 (750)
|.|-|++.
T Consensus 585 GaVCYeT~ 592 (1259)
T KOG0163|consen 585 GAVCYETE 592 (1259)
T ss_pred cceeechH
Confidence 99999988
No 20
>KOG0161|consensus
Probab=100.00 E-value=2.4e-113 Score=1053.30 Aligned_cols=572 Identities=40% Similarity=0.673 Sum_probs=490.5
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|..||+||||+.+|||+++++++|+++...+|||||||||+.||++|+.+++||||+|+ ||||||||+ +|
T Consensus 113 TYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiT----GESGAGKTe---NT 185 (1930)
T KOG0161|consen 113 TYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILIT----GESGAGKTE---NT 185 (1930)
T ss_pred HcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeee----cCCCCCcch---hH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|.+++|| +.+++++.. ..+....++++|+++||||||||||+|++|+||||||||++++|+..|.|+||
T Consensus 186 KkVIqyl-------a~va~~~~~----~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a 254 (1930)
T KOG0161|consen 186 KKVIQYL-------ASVASSSTK----KVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGA 254 (1930)
T ss_pred HHHHHHH-------HHHhhcccc----CCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchh
Confidence 9999999 666554311 01112679999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCC-cccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTD-ASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~-~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
.|.+||||||||+.|+++|||||||||||+|.++.++..|.|++ +.+|.|+.++.. +++++||++.|..+..||..||
T Consensus 255 ~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilg 333 (1930)
T KOG0161|consen 255 DIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILG 333 (1930)
T ss_pred hHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999987 889999999886 8999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeecc-------------------ccCCChHHHHHHHhhceeccCCcEEEEeCCHhhH
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKAA-------------------VIAVPKQPLIDALTRKTFFAQGETVISTLSREQS 300 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~~-------------------~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A 300 (750)
|+++++.+||+|+||||||||+.|... ++|++.+++..+++++.+.++++-+....+.+|+
T Consensus 334 fs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~ 413 (1930)
T KOG0161|consen 334 FSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQV 413 (1930)
T ss_pred CCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHH
Confidence 999999999999999999999999732 4599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcch
Q psy14295 301 VDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSW 380 (750)
Q Consensus 301 ~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~ 380 (750)
..+..+|||++|+++|.|+|.+||.+|... .+..++||||||+|||+|..||
T Consensus 414 ~~~v~alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nS--------------------------- 465 (1930)
T KOG0161|consen 414 LFAVEALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNS--------------------------- 465 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCC---------------------------
Confidence 999999999999999999999999999776 5577899999999999999998
Q ss_pred hHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHH
Q psy14295 381 IEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLA 460 (750)
Q Consensus 381 ~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~ 460 (750)
T Consensus 466 -------------------------------------------------------------------------------- 465 (1930)
T KOG0161|consen 466 -------------------------------------------------------------------------------- 465 (1930)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHhhchhhhhcchhhccCCC
Q psy14295 461 AVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQLNIMALIDEESKFPK 539 (750)
Q Consensus 461 ~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~~~~gi~~~l~~~~~~~~ 539 (750)
||||||||+||+||+||+.|+|..||++|.+|||.|.+|+| .|-+||||||+ +|.||+++||++|.+|+
T Consensus 466 ---------FEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~Gi~slLdEEc~~Pk 535 (1930)
T KOG0161|consen 466 ---------FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPMGILSLLDEECVVPK 535 (1930)
T ss_pred ---------HHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chhhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999 68999999998 56799999999999999
Q ss_pred CchhhHHHHHHHHh-CCCCCccCCC-CCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh--------hh--
Q psy14295 540 GTDHTLLAKLHKTH-GLHRNYLKPK-SDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN--------IR-- 602 (750)
Q Consensus 540 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~--------~R-- 602 (750)
+||.+|++|+...| +.|+.|.+|+ ...+..|.|.||||+|.|++. ++|.+-+..+.+++.. |-
T Consensus 536 Atd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~ 615 (1930)
T KOG0161|consen 536 ATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDY 615 (1930)
T ss_pred CccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhh
Confidence 99999999999999 8899999995 234579999999999999999 3333222222111111 10
Q ss_pred ------------------------hHHHHHHHHHHH--------------------------HHHH-----------hhh
Q psy14295 603 ------------------------GWVYRRRYKRLR--------------------------AATM-----------TIQ 621 (750)
Q Consensus 603 ------------------------g~~~Rr~~~~~r--------------------------~aai-----------~IQ 621 (750)
.+++|..+.++. ...+ .|.
T Consensus 616 ~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIR 695 (1930)
T KOG0161|consen 616 AGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIR 695 (1930)
T ss_pred hccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHH
Confidence 123333333321 1122 344
Q ss_pred hhhhhHHHHHHHHhhhHHHHHHHH-----------------------------------HHH----HHHHHHHHHhhhhh
Q psy14295 622 KYWKGWAQRRRYQRMRVGYMRLQA-----------------------------------LIR----SRLLSHRFRHLRGH 662 (750)
Q Consensus 622 s~~Rg~~~R~~~~~~r~a~~~IQs-----------------------------------~~R----~~~~R~~~~~~~~a 662 (750)
-|..||..|..|..++..+..+.+ +|| +.+...+-..+...
T Consensus 696 icR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~i 775 (1930)
T KOG0161|consen 696 ICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQI 775 (1930)
T ss_pred HHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHH
Confidence 566777776666555543332211 111 11111122233456
Q ss_pred HHHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 663 IVGLQARARGYLTRRMYAQKM---WAIVKIQAHVRRMIAQRHYQKLQFEY 709 (750)
Q Consensus 663 ai~IQa~~Rg~laRr~y~~~r---~Aai~IQs~~R~~~aRr~y~~lk~~~ 709 (750)
++.+|+.+|||++|+.|.++. .|+.+||+++|.|...+.|.+.+.-.
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~ 825 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFT 825 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 899999999999999998874 69999999999999998887776443
No 21
>KOG0160|consensus
Probab=100.00 E-value=2.6e-111 Score=973.66 Aligned_cols=556 Identities=41% Similarity=0.677 Sum_probs=502.1
Q ss_pred CcccCcEEEEcCCCCCC-CCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILP-IYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+|++|||||||+.+| +|+++.|..|+ ...+++.||+|++|+.||+.|...+.||+|||| ||||||||+ +
T Consensus 39 ty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~~m~~~~~~QsIivs----GESGAgkT~---~ 110 (862)
T KOG0160|consen 39 TYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYRDMTPDGVNQSIIVS----GESGAGKTE---T 110 (862)
T ss_pred hhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHHHhhhccCCceeeee----CCCCCchhH---H
Confidence 89999999999999999 99999999999 888999999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
+|.+|+|| +.+.+.. ...+||++|+++|||+||||||+|.+|+||||||||++++|+..|+|+|
T Consensus 111 aK~~m~yl-------a~v~~~~---------~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~G 174 (862)
T KOG0160|consen 111 AKYLMEYL-------ASVGGSV---------EGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISG 174 (862)
T ss_pred HHHHHHHH-------HHHhccc---------hhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhccccc
Confidence 99999999 6666541 1346999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
|+++|||||||||+.++++|||||||||+|+|.+ +++.+|+|.++..|.|+++++|...++.+|+.+|..++.||..+|
T Consensus 175 A~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~~~vg 253 (862)
T KOG0160|consen 175 AKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFLSTTEAMLFVG 253 (862)
T ss_pred ceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeec------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHH
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKA------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSV 301 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~ 301 (750)
++.++|..||++|+|||||||++|.. .++|++.+.|...|+.+.+.++++.+.++++..+|.
T Consensus 254 i~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~ 333 (862)
T KOG0160|consen 254 ISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDDHLWTAAELLGCDEEALEQWLSKRKILTARESIVKPLTLSQAV 333 (862)
T ss_pred CChHHHHHHHHHHHHHhccCceEeecccccccccccchHHHHHHHHhCCCHHHHHHHHHHHHhhcccceeecccCHHHHH
Confidence 99999999999999999999999962 245999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchh
Q psy14295 302 DVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWI 381 (750)
Q Consensus 302 ~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~ 381 (750)
..||++||.||++||+|+|..||..|.........+||+|||+|||.|.+|+
T Consensus 334 ~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~ns---------------------------- 385 (862)
T KOG0160|consen 334 KRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNS---------------------------- 385 (862)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCc----------------------------
Confidence 9999999999999999999999999987655567899999999999999998
Q ss_pred HHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHH
Q psy14295 382 EQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAA 461 (750)
Q Consensus 382 ~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~ 461 (750)
T Consensus 386 -------------------------------------------------------------------------------- 385 (862)
T KOG0160|consen 386 -------------------------------------------------------------------------------- 385 (862)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCCCc
Q psy14295 462 VLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGT 541 (750)
Q Consensus 462 ~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~ 541 (750)
||||||||+||+||+.|++|+|+.||++|..|+|.|..++|.||++|+++|+. |.|++++|||+|.+|+++
T Consensus 386 --------feQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t 456 (862)
T KOG0160|consen 386 --------FEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGT 456 (862)
T ss_pred --------HHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred hhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchh----------------------------
Q psy14295 542 DHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDR---------------------------- 588 (750)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~---------------------------- 588 (750)
+++|.+|+...+..|..|.+|+.. +..|.|.||||+|.|+++ +||.
T Consensus 457 ~~~~a~KL~~~~~~~~~f~kpr~~-~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~ 535 (862)
T KOG0160|consen 457 DETLAQKLYQTLKRNKRFTKPRLS-RTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADS 535 (862)
T ss_pred cchHHHHHHHHhccCCccCCCCCC-cCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcch
Confidence 999999999999999999999875 568999999999999987 1110
Q ss_pred --------------------------------------------hhhhHHHhhhhhhh-----------h----------
Q psy14295 589 --------------------------------------------VLTRNILVLQKNIR-----------G---------- 603 (750)
Q Consensus 589 --------------------------------------------~l~~a~v~IQ~~~R-----------g---------- 603 (750)
.++...++.|..+- |
T Consensus 536 ~~~~~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef 615 (862)
T KOG0160|consen 536 SAKSKRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEF 615 (862)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHH
Confidence 01111111111110 1
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhh
Q psy14295 604 -----------------------------------------------WVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRM 636 (750)
Q Consensus 604 -----------------------------------------------~~~Rr~~~~~r~aai~IQs~~Rg~~~R~~~~~~ 636 (750)
.+..++-..+..+++.||+.+|+|..|+.|..+
T Consensus 616 ~~r~~~L~~~~~~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~ 695 (862)
T KOG0160|consen 616 VNRYGILMPNDSASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQL 695 (862)
T ss_pred HHHHhhcCcchhcccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222335677899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14295 637 RVGYMRLQALIRSRLLSHRFRHLRGHIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQR 700 (750)
Q Consensus 637 r~a~~~IQs~~R~~~~R~~~~~~~~aai~IQa~~Rg~laRr~y~~~r~Aai~IQs~~R~~~aRr 700 (750)
+.+++.+|+.+||+++|+... ...+++.||+.||+++.|+.|...+.+++.||+.+|++.+|.
T Consensus 696 r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 696 RSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999987444 556888999999999999999999999999999999998887
No 22
>KOG4229|consensus
Probab=100.00 E-value=1.2e-87 Score=794.69 Aligned_cols=449 Identities=52% Similarity=0.832 Sum_probs=425.3
Q ss_pred CcccCcEEEEcCCCCCC-CCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILP-IYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+|++|++||||+++| +|.++.++.|.++..+++|||||++|+.||++|++...||||+|| ||||||||+ +
T Consensus 92 ~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~~m~~~~~~Qcivis----GesgsGkte---s 164 (1062)
T KOG4229|consen 92 EYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQDMLREKEDQCIVIS----GESGSGKTE---S 164 (1062)
T ss_pred eeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHHHhhhhhccceeEEEe----cccCCCCch---h
Confidence 79999999999999999 999999999999999999999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhccc-CCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCcee
Q psy14295 80 PTLSTQFKKSLDCLMKTLS-NCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIE 158 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s-~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ 158 (750)
++++++|| +.++ +.+++ +++.|+.++|+||+||||+|.+|+||||||||+++.|...|.+.
T Consensus 165 t~l~~~~L-------s~Lsq~~~~~-----------~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~ 226 (1062)
T KOG4229|consen 165 TKLLWQFL-------SILSQGNNSP-----------VEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIE 226 (1062)
T ss_pred hHHHHHHH-------HHHhcCCCCc-----------hhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCC
Confidence 99999999 6665 44443 78899999999999999999999999999999999999999999
Q ss_pred eeeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCccc-CCcchHHHHHHHHHHHhh
Q psy14295 159 GAKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITC-EGRDDAAEFADIRSAMKV 237 (750)
Q Consensus 159 ga~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~-~~~~d~~~f~~l~~Al~~ 237 (750)
||++..||||||||+.|+.+||||||||++++|++.+++..+.|..+++|.||+++.+..+ ++.++...|..+..+|..
T Consensus 227 Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v 306 (1062)
T KOG4229|consen 227 GAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQFIRLEAAMSV 306 (1062)
T ss_pred cchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888 889999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHhCCceeec---------------------cccCCChHHHHHHHhhceeccCCcEEEEeCC
Q psy14295 238 LQFSDEDIWDVFKLLAAVLHTGNIKYKA---------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLS 296 (750)
Q Consensus 238 lG~~~~e~~~I~~iLaaILhLGni~f~~---------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~ 296 (750)
+||+.+++..|+++++||||+||+.|.. .++.++.+.|.+++|.++....||.+..+++
T Consensus 307 ~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~ 386 (1062)
T KOG4229|consen 307 VGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNVTRGELLLAPLL 386 (1062)
T ss_pred hccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccceeeehhhhhhhhh
Confidence 9999999999999999999999998852 2459999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC-CccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhc
Q psy14295 297 REQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQ-ARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAIS 375 (750)
Q Consensus 297 ~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~-~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~ 375 (750)
.++|.+.||++||+||++||.|||.+||..+..+... ...+||||||||||+|..|+
T Consensus 387 ~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~ns---------------------- 444 (1062)
T KOG4229|consen 387 VERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNS---------------------- 444 (1062)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhH----------------------
Confidence 9999999999999999999999999999999655321 35799999999999997776
Q ss_pred CCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHH
Q psy14295 376 GKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDV 455 (750)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i 455 (750)
T Consensus 445 -------------------------------------------------------------------------------- 444 (1062)
T KOG4229|consen 445 -------------------------------------------------------------------------------- 444 (1062)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhc
Q psy14295 456 FKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEES 535 (750)
Q Consensus 456 ~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~ 535 (750)
|||+|||||||+||.||++|+|..|+++|..|+|+|..+.|.||.+|+|+|..+|.||+.+||+++
T Consensus 445 --------------fEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees 510 (1062)
T KOG4229|consen 445 --------------FEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEES 510 (1062)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhh
Q psy14295 536 KFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVL 590 (750)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l 590 (750)
.+|++++.+++.|+...++.+..+..|+.....+|+|.||||.|.|++. +||.+.
T Consensus 511 ~fP~~td~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~ 570 (1062)
T KOG4229|consen 511 RFPKATDQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVR 570 (1062)
T ss_pred cCCchHHHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhh
Confidence 9999999999999999999988888888888889999999999999998 555444
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.6e-39 Score=378.39 Aligned_cols=209 Identities=37% Similarity=0.566 Sum_probs=161.4
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc----chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g------- 421 (750)
||||||||||.||.||+|||+|++.. +.||++||++||||||||||+|+||||||||||||+|-||+.|
T Consensus 158 SGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I 237 (1463)
T COG5022 158 SGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKI 237 (1463)
T ss_pred ecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhh
Confidence 89999999999999999999998754 3899999999999999999999999999999999999999765
Q ss_pred ----------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCCh
Q psy14295 422 ----------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSD 449 (750)
Q Consensus 422 ----------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~ 449 (750)
|...++|+||..||+.|.+||+++||++
T Consensus 238 ~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~ 317 (1463)
T COG5022 238 ETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDE 317 (1463)
T ss_pred hhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCCh
Confidence 4668889999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCcchhh--hhccc-c-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHh---
Q psy14295 450 EDIWDVFKLLAAVLHTGNINFEQ--FCINY-A-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAI--- 522 (750)
Q Consensus 450 ~e~~~i~~~~~~~l~~gn~~feq--lciN~-~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~--- 522 (750)
+|+.+||+++|+|||+||+.|.. =++-- . ++.++ +.-+++.-+...+. .-|..
T Consensus 318 eeq~~IF~iLAaILhiGNIef~~~r~g~a~~~~~~~~~--~~c~LLgId~~~f~------------------k~lvk~~i 377 (1463)
T COG5022 318 EEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNSVLD--KACYLLGIDPSLFV------------------KWLVKRQI 377 (1463)
T ss_pred HHHHHHHHHHHHHHhhcceeeeecccchhhcCCchHHH--HHHHHhCCCHHHHH------------------HHHHHhHh
Confidence 99999999999999999999842 01000 0 11222 11222222222222 11111
Q ss_pred --------hchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc
Q psy14295 523 --------KQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 523 --------~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~ 584 (750)
.|...-+.+-....++|..|+++|.|+...+. .++..|.. ...+.||+++||++.|+.+
T Consensus 378 kt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN--~sL~~~~~-~~~fIGVLDIyGFEiFEkN 444 (1463)
T COG5022 378 KTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRIN--KSLDHSAA-ASNFIGVLDIYGFEIFEKN 444 (1463)
T ss_pred hcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCccc-cccceeEEeecchhhhccC
Confidence 12334444444455789999999999998874 44444443 3578999999999999999
No 24
>KOG0164|consensus
Probab=100.00 E-value=1.4e-36 Score=335.53 Aligned_cols=225 Identities=33% Similarity=0.513 Sum_probs=166.6
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc-----chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH-----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG------ 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g------ 421 (750)
||||||||||.+|.||+|+|++.++. ..|.+++|+|||||||||||||+|||||||||||.+|+||-.|
T Consensus 100 SGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG~ 179 (1001)
T KOG0164|consen 100 SGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGGH 179 (1001)
T ss_pred ecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCcccch
Confidence 89999999999999999999998653 4699999999999999999999999999999999999999766
Q ss_pred -----------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCC
Q psy14295 422 -----------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFS 448 (750)
Q Consensus 422 -----------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~ 448 (750)
|+--+.+++|+++|+.+.+||+++||+
T Consensus 180 I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg~~~v~sinD~~dfk~V~~Am~vIgFs 259 (1001)
T KOG0164|consen 180 ITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQGSAKVSSINDASDFKAVQKAMRVIGFS 259 (1001)
T ss_pred HhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhhhhhhcccccHHHHHHHHHHHHHcCCC
Confidence 334566999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCcchhhhh-cccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhh
Q psy14295 449 DEDIWDVFKLLAAVLHTGNINFEQFC-INYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNI 527 (750)
Q Consensus 449 ~~e~~~i~~~~~~~l~~gn~~feqlc-iN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi 527 (750)
+||+..+++|+|+||||||+.|..-- -+-.-+.-+--+...++..+.++.. +.+....+.-. -|.+ .++..+
T Consensus 260 ~eEVe~v~~iiAavLhLGNv~f~~~ed~~~~~~~~~l~~~aell~v~~del~-~aL~~Rtvaa~-----~e~v-~k~hn~ 332 (1001)
T KOG0164|consen 260 EEEVESVLSIIAAVLHLGNVEFADNEDSSGIVNGAQLKYIAELLSVTGDELE-RALTSRTVAAG-----GEIV-LKQHNV 332 (1001)
T ss_pred HHHHHHHHHHHHHHHhccceEEeecCcccccchhHHHHHHHHHHcCCHHHHH-HHHHHHHHHhc-----cchh-hccccH
Confidence 99999999999999999999994311 1111111111133444444433333 22222111110 1111 245566
Q ss_pred hhcchhhccCCCCchhhHHHHHHHHhCCCCCcc--CCCCCCCCCeeeecccceEEeecc
Q psy14295 528 MALIDEESKFPKGTDHTLLAKLHKTHGLHRNYL--KPKSDINTSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~F~I~H~aG~V~Yd~~ 584 (750)
...-...++++|+.|+++|.||...++..-... .+....+...||.+++|+..++.+
T Consensus 333 ~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~N 391 (1001)
T KOG0164|consen 333 EQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDN 391 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCC
Confidence 666666677899999999999998874432222 111122579999999999999999
No 25
>KOG0163|consensus
Probab=100.00 E-value=2.4e-33 Score=310.25 Aligned_cols=224 Identities=37% Similarity=0.539 Sum_probs=180.5
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG----------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g----------- 421 (750)
|+||||||||++|++|+||+--=|.+..|+++||.+||+|||||||||+|||||||||||++||||..|
T Consensus 150 SGESGAGKTEstK~vLrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYL 229 (1259)
T KOG0163|consen 150 SGESGAGKTESTKAVLRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYL 229 (1259)
T ss_pred ecCCCCCcchhHHHHHHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHH
Confidence 899999999999999999999877788999999999999999999999999999999999999999755
Q ss_pred --------------------------------------------------------------------------Cccccc
Q psy14295 422 --------------------------------------------------------------------------GSITCE 427 (750)
Q Consensus 422 --------------------------------------------------------------------------~~~~~~ 427 (750)
|+...+
T Consensus 230 LEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~ 309 (1259)
T KOG0163|consen 230 LEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDP 309 (1259)
T ss_pred HHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCc
Confidence 233445
Q ss_pred CCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhhh------cccchhHHHHH-HHHHhhhhhHhhhhh
Q psy14295 428 GRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFC------INYANENLQQF-FVQHIFKLEQEEYNV 500 (750)
Q Consensus 428 ~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlc------iN~~nE~lq~~-~~~~~f~~e~~~y~~ 500 (750)
-+||-.+|..+..||+.+|++++|+..|++++|+||||||+.||... .+..|-.-|.. +...++..++.+.+
T Consensus 310 iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr- 388 (1259)
T KOG0163|consen 310 IIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELR- 388 (1259)
T ss_pred ccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHH-
Confidence 67899999999999999999999999999999999999999999864 66666666665 55678888888777
Q ss_pred hccccccccccCh--HHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccce
Q psy14295 501 EAINWQHIEFVDN--QDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGV 578 (750)
Q Consensus 501 e~i~~~~~~~~dn--~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~ 578 (750)
-|+...-+..... ..+ +..-|.-+-..-+.+++++|+.|+.+|.|++..+ |.+++..++ ....||+++||+
T Consensus 389 ~~L~aRvMqtt~GG~kGT---vIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~i--NqsiPFe~S--t~fiGVLDiAGF 461 (1259)
T KOG0163|consen 389 TGLCARVMQTTKGGFKGT---VIRVPLKIHEASNARDALAKAIYSKLFDWLVGRI--NQSIPFEKS--TFFIGVLDIAGF 461 (1259)
T ss_pred HHHHHHHHHhccCCccce---EEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHh--hcccccccc--cceeEEEeeccc
Confidence 4442211100000 000 0012445566667788899999999999998887 556555554 378999999999
Q ss_pred EEeecc
Q psy14295 579 VFYDTR 584 (750)
Q Consensus 579 V~Yd~~ 584 (750)
+.|.++
T Consensus 462 Eyf~~N 467 (1259)
T KOG0163|consen 462 EYFAVN 467 (1259)
T ss_pred eeeecc
Confidence 999999
No 26
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.3e-33 Score=334.63 Aligned_cols=222 Identities=29% Similarity=0.439 Sum_probs=168.8
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcC--CcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC---------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISG--KHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG--------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g--------- 421 (750)
||||||||||++|.+|+|||.+++ ..++||++||++||||||||||||++|+|||||||||+|+||..|
T Consensus 189 SGESGAGKTe~tK~im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~ 268 (821)
T PTZ00014 189 SGESGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVA 268 (821)
T ss_pred EcCCCCCchHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEE
Confidence 799999999999999999999875 346899999999999999999999999999999999999999776
Q ss_pred -------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChhhH
Q psy14295 422 -------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDEDI 452 (750)
Q Consensus 422 -------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~ 452 (750)
++..+++.||.++|.++.+||+++||+++|+
T Consensus 269 YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~ 348 (821)
T PTZ00014 269 FLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDFEEVMESFDSMGLSESQI 348 (821)
T ss_pred EeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCCCCccCCCCchHHHHHHHHHHHHHcCCCHHHH
Confidence 1335678999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhhh-------cccchhHHHH-HHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhc
Q psy14295 453 WDVFKLLAAVLHTGNINFEQFC-------INYANENLQQ-FFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQ 524 (750)
Q Consensus 453 ~~i~~~~~~~l~~gn~~feqlc-------iN~~nE~lq~-~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~ 524 (750)
..||+|+|+||||||+.|.+-- .-..++.... -....++..+.+.+. +.+....+... +.. ..+|
T Consensus 349 ~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~-~~L~~~~~~~~-~e~-----i~~~ 421 (821)
T PTZ00014 349 EDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLK-KELTVKVTYAG-NQK-----IEGP 421 (821)
T ss_pred HHHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHH-HHhhceEEEeC-Cee-----EecC
Confidence 9999999999999999997521 1111111111 134455555555554 33333222111 110 1134
Q ss_pred hhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc
Q psy14295 525 LNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 525 ~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~ 584 (750)
..+-...+....++|+.|+.+|.|+...+ |..+..+. ......||++++|++.++.+
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~I--N~~l~~~~-~~~~~IGiLDI~GFE~f~~N 478 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNL--NATIEPPG-GFKVFIGMLDIFGFEVFKNN 478 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCc-ccCceEEEEecccccccCcc
Confidence 44555556667789999999999999887 34443333 23568999999999999988
No 27
>KOG0160|consensus
Probab=100.00 E-value=8.4e-33 Score=321.46 Aligned_cols=223 Identities=34% Similarity=0.485 Sum_probs=164.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCC--cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC---------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGK--HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG--------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g--------- 421 (750)
|+|||||||+.+|++|+||+.++++ ...||++||+|||+|||||||+|++|+|||||||||+|+||.+|
T Consensus 100 sGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~GA~~~T 179 (862)
T KOG0160|consen 100 SGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISGAKIRT 179 (862)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhcccccceeee
Confidence 8999999999999999999999998 77899999999999999999999999999999999999999764
Q ss_pred -------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChhhH
Q psy14295 422 -------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDEDI 452 (750)
Q Consensus 422 -------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~ 452 (750)
+.....+.+|+++|..+..||+++|++.+++
T Consensus 180 YLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~~~vgi~~~~q 259 (862)
T KOG0160|consen 180 YLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFLSTTEAMLFVGISESHQ 259 (862)
T ss_pred EEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHHHHHHHHHHHhcCChHHH
Confidence 2446678999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhhhcc-cchhHHHHH-HHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhc
Q psy14295 453 WDVFKLLAAVLHTGNINFEQFCIN-YANENLQQF-FVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMAL 530 (750)
Q Consensus 453 ~~i~~~~~~~l~~gn~~feqlciN-~~nE~lq~~-~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~ 530 (750)
..||++++++||+||+.|.---.+ ....+..++ ....+|....+.+.+ -|....+.-. =+.| .+|.-....
T Consensus 260 ~~if~lla~ilhlGni~f~~~~~~~~~~~~~~~~~~~a~Llg~~~~~l~~-~L~~r~i~~~-----~e~i-~k~l~~~qa 332 (862)
T KOG0160|consen 260 ELIFRLLAAILHLGNIQFSSGVEETSSSPVDDHLWTAAELLGCDEEALEQ-WLSKRKILTA-----RESI-VKPLTLSQA 332 (862)
T ss_pred HHHHHHHHHHhccCceEeecccccccccccchHHHHHHHHhCCCHHHHHH-HHHHHHhhcc-----ccee-ecccCHHHH
Confidence 999999999999999998532221 111111111 111233333222221 0100000000 0000 134444555
Q ss_pred chhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc
Q psy14295 531 IDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 531 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~ 584 (750)
.+..+.+||-.|..+|.|+...++..-....|+ ...+.+|++++|+..++.+
T Consensus 333 ~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~--~~~~igVLDiYgFEsF~~n 384 (862)
T KOG0160|consen 333 VKRRDALAKQLYSLLFDWLVAKINGSLGANDPK--AERFIGVLDIYGFESFEVN 384 (862)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhcccccCCCC--ccceeeeehcccccccccC
Confidence 566667888999999999988875443333333 3578999999999999999
No 28
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.98 E-value=4.3e-32 Score=317.72 Aligned_cols=241 Identities=51% Similarity=0.758 Sum_probs=184.0
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG----------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g----------- 421 (750)
||||||||||++|.+|+|||.++++.+++|++|++|||||||||||||++|+||||||||++|+||..|
T Consensus 92 sGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i~~yL 171 (671)
T cd01381 92 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYL 171 (671)
T ss_pred EcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcEEEEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred ------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChhhHH
Q psy14295 422 ------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDEDIW 453 (750)
Q Consensus 422 ------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~ 453 (750)
++..+++.||+.+|..+.+||+++||+++|+.
T Consensus 172 LEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~ 251 (671)
T cd01381 172 LEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLMFTDQEIW 251 (671)
T ss_pred ccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHHHHcCCCHHHHH
Confidence 13355788999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcchhhhh------cccchh-HHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchh
Q psy14295 454 DVFKLLAAVLHTGNINFEQFC------INYANE-NLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLN 526 (750)
Q Consensus 454 ~i~~~~~~~l~~gn~~feqlc------iN~~nE-~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~g 526 (750)
.||+|+|+||||||+.|.+-- .-..|+ .++ ....++..+.+++. +.+.+..+... +.. ..+|..
T Consensus 252 ~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~--~~a~LLgv~~~~L~-~~lt~~~~~~~-~e~-----i~~~~~ 322 (671)
T cd01381 252 EIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQ--RVAQLLGVPIQDLM-DALTSRTIFTR-GET-----VVTPLS 322 (671)
T ss_pred HHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHH--HHHHHhCCCHHHHh-hhhceEEEEeC-Cce-----EEecCC
Confidence 999999999999999997531 111221 111 33445555544444 34433322211 110 124455
Q ss_pred hhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhhhhhhH
Q psy14295 527 IMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQKNIRGW 604 (750)
Q Consensus 527 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~~~Rg~ 604 (750)
+-...+..+.++|+.|+.+|.|+...+ |..+..|........||+++.|++.++.+.-+++ ..-+...||..+--.
T Consensus 323 ~~qA~~~rdalak~lY~~lF~wiV~~I--N~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~ 399 (671)
T cd01381 323 REQAVDVRDAFVKGIYGRLFVWIVRKI--NAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQH 399 (671)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 556667777889999999999999887 4444444333456899999999999999866665 444556777766443
No 29
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.97 E-value=1.1e-31 Score=315.45 Aligned_cols=240 Identities=35% Similarity=0.523 Sum_probs=179.2
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc------chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-----
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH------SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG----- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g----- 421 (750)
||||||||||++|.+|+|||.+++.. ++|+++|+++||||||||||||++|+||||||||++|+||..|
T Consensus 92 SGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga 171 (691)
T cd01380 92 SGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGA 171 (691)
T ss_pred EcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEE
Confidence 79999999999999999999998643 6899999999999999999999999999999999999999765
Q ss_pred ------------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCC
Q psy14295 422 ------------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQF 447 (750)
Q Consensus 422 ------------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf 447 (750)
+...+++.+|+.+|..+.+||+++||
T Consensus 172 ~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~ 251 (691)
T cd01380 172 NMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLLGI 251 (691)
T ss_pred EEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHHHHHHHHHHcCC
Confidence 22356678999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCcchhhh-----hcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHh
Q psy14295 448 SDEDIWDVFKLLAAVLHTGNINFEQF-----CINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAI 522 (750)
Q Consensus 448 ~~~e~~~i~~~~~~~l~~gn~~feql-----ciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~ 522 (750)
+++|+..||+|+|+||||||+.|.+- ++-...+.++ ....++..+.++.. +.+....+... +. . ..
T Consensus 252 s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e----~-i~ 322 (691)
T cd01380 252 SEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQ--IACELLGVDASDLR-KWLVKRQIVTR-SE----K-IV 322 (691)
T ss_pred CHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHH--HHHHHhCCCHHHHH-HHHHhCEEEEC-Ce----e-EE
Confidence 99999999999999999999999763 1111112222 33444544444444 33332222111 00 0 12
Q ss_pred hchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCC--CCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhh
Q psy14295 523 KQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKP--KSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQK 599 (750)
Q Consensus 523 ~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~ 599 (750)
+|..+-...+....++|+.|+.+|.|+...++ ..+..+ ........||+++.|++.++.+.-+++ ..-+...||.
T Consensus 323 ~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN--~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 323 KPLTKEQAIVARDALAKHIYSKLFDWIVDVIN--KSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 34555566677778899999999999998874 333322 123356899999999999999866654 3445557776
Q ss_pred hhhh
Q psy14295 600 NIRG 603 (750)
Q Consensus 600 ~~Rg 603 (750)
.+--
T Consensus 401 ~f~~ 404 (691)
T cd01380 401 QFNQ 404 (691)
T ss_pred HHHH
Confidence 6543
No 30
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.97 E-value=4.3e-31 Score=309.23 Aligned_cols=239 Identities=35% Similarity=0.519 Sum_probs=180.7
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG----------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g----------- 421 (750)
||||||||||++|.+|+||+.+++. ++++++|+++||||||||||||++|+||||||||++|+||..|
T Consensus 98 sGESGaGKTe~~K~i~~yLa~~~~~-~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga~i~~yL 176 (677)
T cd01383 98 SGESGAGKTETAKIAMQYLASLGGG-SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFL 176 (677)
T ss_pred ecCCCCCcchHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEEEEEEEe
Confidence 7999999999999999999999754 4899999999999999999999999999999999999999765
Q ss_pred ------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChhhHH
Q psy14295 422 ------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDEDIW 453 (750)
Q Consensus 422 ------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~ 453 (750)
+...+++.+|+.+|.++.+||+.+||+++|+.
T Consensus 177 LEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~e~~ 256 (677)
T cd01383 177 LEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIVHISKEDQE 256 (677)
T ss_pred cCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHHHHHHHHHcCCCHHHHH
Confidence 13355688999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcchhhhh----cccc-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhh
Q psy14295 454 DVFKLLAAVLHTGNINFEQFC----INYA-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIM 528 (750)
Q Consensus 454 ~i~~~~~~~l~~gn~~feqlc----iN~~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~ 528 (750)
.||+|+|+||||||+.|++.. .-.. .|.++ ....++..+.+++. +.+....+... +.. ..+|..+-
T Consensus 257 ~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e~-----~~~~~~~~ 327 (677)
T cd01383 257 NVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALS--TAAKLIGCNIEDLM-LALSTRKMHVN-NDN-----IVQKLTLQ 327 (677)
T ss_pred HHHHHHHHHHhhcceEEEecCCCcccccCChHHHH--HHHHHhCCCHHHHH-HHhhhcEEEeC-Cce-----EeecCCHH
Confidence 999999999999999996521 1111 22222 34455555555544 34433322211 111 12455666
Q ss_pred hcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhhhhhh
Q psy14295 529 ALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQKNIRG 603 (750)
Q Consensus 529 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~~~Rg 603 (750)
...+....++|+.|+.+|.|+...+ |..+..++.......||+|+.|++.++.+.-+++ ..-+...||..+--
T Consensus 328 qa~~~rdalak~lY~~lF~wiV~~I--N~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~ 401 (677)
T cd01383 328 QAIDARDALAKSIYASLFDWLVEQI--NKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNR 401 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6667777889999999999999887 3444333332346899999999999998866654 33455577776544
No 31
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.97 E-value=5.7e-31 Score=309.64 Aligned_cols=239 Identities=36% Similarity=0.519 Sum_probs=180.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCC----------cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGK----------HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g- 421 (750)
||||||||||++|.+|+||+.+++. .++||++|+++||||||||||||++|+||||||||++|+||..|
T Consensus 97 SGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~ 176 (693)
T cd01377 97 TGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGK 176 (693)
T ss_pred EcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCC
Confidence 7999999999999999999999753 24799999999999999999999999999999999999999765
Q ss_pred ----------------------------------C------------------------cccccCCCchhhHHHHHHHHH
Q psy14295 422 ----------------------------------G------------------------SITCEGRDDAAEFADIRSAMK 443 (750)
Q Consensus 422 ----------------------------------~------------------------~~~~~~~~d~~~f~~~~~a~~ 443 (750)
| ....++.+|+.+|.++.+||+
T Consensus 177 i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~d~~~f~~~~~al~ 256 (693)
T cd01377 177 IAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELTIPGVDDAEEFKLTDEAFD 256 (693)
T ss_pred EEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCccCCCCcHHHHHHHHHHHHH
Confidence 1 113457799999999999999
Q ss_pred HcCCChhhHHHHHHHHHHHhhcCCcchhhh----hcccchh-HHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHH
Q psy14295 444 VLQFSDEDIWDVFKLLAAVLHTGNINFEQF----CINYANE-NLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALD 518 (750)
Q Consensus 444 ~~gf~~~e~~~i~~~~~~~l~~gn~~feql----ciN~~nE-~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~ 518 (750)
.+||+++|+..||+|+|+||||||+.|++- ....+++ .++ ....++..+.++.. +.+....+... +.
T Consensus 257 ~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e---- 328 (693)
T cd01377 257 ILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEAD--KAAHLLGVNSADLL-KALLHPRIKVG-RE---- 328 (693)
T ss_pred HcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHH--HHHHHhCCCHHHHH-HHhcceEEEEC-Ce----
Confidence 999999999999999999999999999753 1122322 122 34455555555554 34433322211 11
Q ss_pred HHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhhh-hhHHHhh
Q psy14295 519 LIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRVL-TRNILVL 597 (750)
Q Consensus 519 li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~l-~~a~v~I 597 (750)
. ..+|..+-...+....++|+.|+.+|+|+...++ ..+..+ .......||+++.|++.++.+.-+++. +=+...|
T Consensus 329 ~-i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN--~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkL 404 (693)
T cd01377 329 W-VTKGQNVEQVSFSVGALAKALYERLFLWLVKRIN--KTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKL 404 (693)
T ss_pred e-EeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCC-CCCCceEEEEecccccccCCCCHHHHHHHHhHHHH
Confidence 0 1245566666777778999999999999998873 343332 234568999999999999998666653 3455577
Q ss_pred hhhhhh
Q psy14295 598 QKNIRG 603 (750)
Q Consensus 598 Q~~~Rg 603 (750)
|..+-.
T Consensus 405 Q~~f~~ 410 (693)
T cd01377 405 QQFFNH 410 (693)
T ss_pred HHHHHH
Confidence 766543
No 32
>KOG0162|consensus
Probab=99.97 E-value=1.8e-31 Score=295.23 Aligned_cols=228 Identities=32% Similarity=0.509 Sum_probs=171.1
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc---chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC--------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH---SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG-------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g-------- 421 (750)
|+|||||||+.+|+||+|++++|+.+ ..|.+-||++||+||+||||||+||+||||||||.+|+|+..|
T Consensus 110 SGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP~ggkis 189 (1106)
T KOG0162|consen 110 SGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEPDGGKIS 189 (1106)
T ss_pred ecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCcCcchhh
Confidence 79999999999999999999998643 3689999999999999999999999999999999999999766
Q ss_pred ---------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChh
Q psy14295 422 ---------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDE 450 (750)
Q Consensus 422 ---------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~ 450 (750)
|+.++.++||..||.+|.+||+|+|+.+|
T Consensus 190 NfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~AM~vIGi~~~ 269 (1106)
T KOG0162|consen 190 NFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQETLHAMKVIGINQE 269 (1106)
T ss_pred HHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHHHHHHHheeccCChH
Confidence 45577799999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcchhhhhcccch--hHHHHHHHHHhhhhhHhhhhhhccccccccc--cChHHHHHHHHhhchh
Q psy14295 451 DIWDVFKLLAAVLHTGNINFEQFCINYAN--ENLQQFFVQHIFKLEQEEYNVEAINWQHIEF--VDNQDALDLIAIKQLN 526 (750)
Q Consensus 451 e~~~i~~~~~~~l~~gn~~feqlciN~~n--E~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~--~dn~~~l~li~~~~~g 526 (750)
|+..||+++|+|||+||++|.. -=|||. .+--.-|...++........ +.+.-..++. -.-.+++ .-|..
T Consensus 270 eQ~~v~rmva~IL~lGNIsF~E-e~~~a~V~~~~~~~f~ayLlgi~s~~l~-~~Lt~R~M~s~~G~kr~~~----~v~LN 343 (1106)
T KOG0162|consen 270 EQDEVLRMVAGILHLGNISFIE-EGNYAAVSDKSVLEFPAYLLGIDSARLE-EKLTSRIMESKWGGKREVI----HVPLN 343 (1106)
T ss_pred HHHHHHHHHHHHHhccceeEEe-eCCcceeccchHHHhHHHHhcCCHHHHH-HHHHHHHHhhcccccceeE----Eeccc
Confidence 9999999999999999999976 446651 11111244444444433333 2221110000 0000000 12455
Q ss_pred hhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchh
Q psy14295 527 IMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDR 588 (750)
Q Consensus 527 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~ 588 (750)
+-+...-+++++|+.|..+|.|+....+....-. +.+.+.+.||++++|+++|+.+.-.+
T Consensus 344 v~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~--~~~~~~sIGiLDIYGFEIFe~N~FEQ 403 (1106)
T KOG0162|consen 344 VEQASYTRDALAKAIYARLFDWLVERVNKAMQAF--KGSEEYSIGILDIYGFEIFENNGFEQ 403 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCccccceeeEEeeeeeecccCCHHH
Confidence 6666666677899999999999998874433322 33345789999999999999984443
No 33
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.97 E-value=9.3e-31 Score=307.45 Aligned_cols=240 Identities=30% Similarity=0.460 Sum_probs=178.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCC---cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC--------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGK---HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG-------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g-------- 421 (750)
||||||||||++|.+|+||+.++++ .+++|++|++|||||||||||||++|+||||||||++|+||..|
T Consensus 100 sGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~ 179 (692)
T cd01385 100 SGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVE 179 (692)
T ss_pred ecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEE
Confidence 7999999999999999999999754 36899999999999999999999999999999999999999766
Q ss_pred ---------------------------C------------------------cccccCCCchhhHHHHHHHHHHcCCChh
Q psy14295 422 ---------------------------G------------------------SITCEGRDDAAEFADIRSAMKVLQFSDE 450 (750)
Q Consensus 422 ---------------------------~------------------------~~~~~~~~d~~~f~~~~~a~~~~gf~~~ 450 (750)
| ....++.+|+.+|..+++||+++||+++
T Consensus 180 ~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~ 259 (692)
T cd01385 180 KYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFERLKQAMEMVGFLAA 259 (692)
T ss_pred EeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHH
Confidence 1 1123478899999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcchhhhh-------cccchh-HHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHh
Q psy14295 451 DIWDVFKLLAAVLHTGNINFEQFC-------INYANE-NLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAI 522 (750)
Q Consensus 451 e~~~i~~~~~~~l~~gn~~feqlc-------iN~~nE-~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~ 522 (750)
|+..||+|+|+||||||+.|.+-. .-..|+ .+. .+..++..+.++.. +.+.+..+... +.. ..
T Consensus 260 ~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e~-----i~ 330 (692)
T cd01385 260 TQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVD--LLSQLLKVKRETLM-EALTKKRTVTV-NET-----LI 330 (692)
T ss_pred HHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHH--HHHHHhCCCHHHHH-HHhccCeEEeC-CCe-----EE
Confidence 999999999999999999997531 222332 222 34455555555544 44443322211 111 01
Q ss_pred hchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCC--CCCCCeeeecccceEEeec-ccchhh-hhhHHHhhh
Q psy14295 523 KQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKS--DINTSFGLNHFAGVVFYDT-RERDRV-LTRNILVLQ 598 (750)
Q Consensus 523 ~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~F~I~H~aG~V~Yd~-~~R~~~-l~~a~v~IQ 598 (750)
+|..+-...+....++|+.|+.+|.|+...++ ..+..++. ......||+++.|++.++. +.-+++ .+-+...||
T Consensus 331 ~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN--~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ 408 (692)
T cd01385 331 LPYSLSEAITARDAMAKCLYSALFDWIVLRIN--HALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQ 408 (692)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHHHHH
Confidence 34445555666777899999999999998873 33332221 1245899999999999998 755554 334455677
Q ss_pred hhhhh
Q psy14295 599 KNIRG 603 (750)
Q Consensus 599 ~~~Rg 603 (750)
..+--
T Consensus 409 ~~f~~ 413 (692)
T cd01385 409 YYFNQ 413 (692)
T ss_pred HHHHH
Confidence 66543
No 34
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.97 E-value=5.4e-30 Score=299.86 Aligned_cols=239 Identities=33% Similarity=0.489 Sum_probs=179.7
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCC----cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGK----HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g------- 421 (750)
||||||||||++|.+|+|||.+++. ..+||++|+++||||||||||||++|+||||||||++|+||..|
T Consensus 94 sGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i 173 (674)
T cd01384 94 SGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAI 173 (674)
T ss_pred ECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEEEEE
Confidence 7999999999999999999999753 34799999999999999999999999999999999999999755
Q ss_pred ---------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChh
Q psy14295 422 ---------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDE 450 (750)
Q Consensus 422 ---------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~ 450 (750)
++..+++.+|+++|..+.+||+++||+++
T Consensus 174 ~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al~~lG~~~~ 253 (674)
T cd01384 174 RTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVVGISEE 253 (674)
T ss_pred EEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHHHHHHHHHcCCCHH
Confidence 13345688999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcchhhhh-------cccch-hHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHh
Q psy14295 451 DIWDVFKLLAAVLHTGNINFEQFC-------INYAN-ENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAI 522 (750)
Q Consensus 451 e~~~i~~~~~~~l~~gn~~feqlc-------iN~~n-E~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~ 522 (750)
|+..||+|+|+||||||+.|++-- .+.+| +.++ ....++..+.+++. +.+....+... +.. + .
T Consensus 254 e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~L~~~~~~~~-~e~----i-~ 324 (674)
T cd01384 254 EQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLK--TAAELLMCDEKALE-DALCKRVMVTP-EEV----I-T 324 (674)
T ss_pred HHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHH--HHHHHhCCCHHHHH-HHhcccEEEeC-Cce----E-E
Confidence 999999999999999999996531 11122 1122 44555655555555 34443322211 110 1 2
Q ss_pred hchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhhhh
Q psy14295 523 KQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQKNI 601 (750)
Q Consensus 523 ~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~~~ 601 (750)
+|..+-...+....++|+.|+.+|.|+...++ ..+..+ .......||+++.|++.++.+.-+++ .+-+...+|..+
T Consensus 325 ~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN--~~l~~~-~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f 401 (674)
T cd01384 325 KPLDPDSAELSRDALAKTIYSRLFDWLVNKIN--SSIGQD-PDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHF 401 (674)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCC-CCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHH
Confidence 45555666677777899999999999998874 333322 22346899999999999998865554 334455677665
Q ss_pred hh
Q psy14295 602 RG 603 (750)
Q Consensus 602 Rg 603 (750)
--
T Consensus 402 ~~ 403 (674)
T cd01384 402 NQ 403 (674)
T ss_pred HH
Confidence 43
No 35
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.97 E-value=5.7e-30 Score=300.37 Aligned_cols=244 Identities=32% Similarity=0.509 Sum_probs=181.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc---chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC--------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH---SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG-------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g-------- 421 (750)
|||||||||+++|.+|+||+.+++.. ++++++|+++||||||||||||++|+||||||||++|+||..|
T Consensus 92 sGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~ 171 (674)
T cd01378 92 SGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKIT 171 (674)
T ss_pred EcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeEEEE
Confidence 79999999999999999999998753 4799999999999999999999999999999999999999765
Q ss_pred ---------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChh
Q psy14295 422 ---------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDE 450 (750)
Q Consensus 422 ---------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~ 450 (750)
+...+++.+|+.+|.++.+||+++||+++
T Consensus 172 ~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~s~~ 251 (674)
T cd01378 172 NYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVIGFSED 251 (674)
T ss_pred EeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHHHHHHHcCCCHH
Confidence 12256788999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcchhhhh---cccchhH-HHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchh
Q psy14295 451 DIWDVFKLLAAVLHTGNINFEQFC---INYANEN-LQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLN 526 (750)
Q Consensus 451 e~~~i~~~~~~~l~~gn~~feqlc---iN~~nE~-lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~g 526 (750)
|+..||+|+|+||||||+.|++-. .-.+|+. ++ ....++..+.+++. +.+....+...++.. -+. ..+|..
T Consensus 252 e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~~~~~-~e~-i~~~~~ 326 (674)
T cd01378 252 EQDEIFRIVAAILHLGNVQFAENGDGAAVISDKDVLD--FAAYLLGVDPSELE-KALTSRTIETGGGGR-GEV-YDVPLN 326 (674)
T ss_pred HHHHHHHHHHHHHhhcceEEeccCCCccccCChHHHH--HHHHHcCCCHHHHH-HHhcccEEEeCCCCC-cee-EEecCC
Confidence 999999999999999999997532 1223322 22 34455555555554 344333322221100 000 123455
Q ss_pred hhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhhhhhh
Q psy14295 527 IMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQKNIRG 603 (750)
Q Consensus 527 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~~~Rg 603 (750)
+-...+....++|+.|+.+|.|+...++ ..+..+........||+++.|++.++.+.-+++ .+-+...||..+-.
T Consensus 327 ~~~a~~~rdalak~lY~~lF~wiV~~IN--~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 402 (674)
T cd01378 327 VEQAAYTRDALAKAIYSRLFDWLVSRIN--KALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIE 402 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHHHHH
Confidence 5566666777899999999999998874 333332233356899999999999998866554 34455567766543
No 36
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.96 E-value=9.6e-30 Score=296.85 Aligned_cols=242 Identities=25% Similarity=0.401 Sum_probs=180.0
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcC-CcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISG-KHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG---------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g---------- 421 (750)
+||||||||+++|.+|+||+.+++ ..++++++|+++||||||||||||++|+||||||||++|+|+..|
T Consensus 92 sGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i~~y 171 (653)
T cd01379 92 SGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEY 171 (653)
T ss_pred ecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEEEEEEE
Confidence 799999999999999999999975 456899999999999999999999999999999999999999766
Q ss_pred -------------------------Cc-------------------------ccccCCC----chhhHHHHHHHHHHcCC
Q psy14295 422 -------------------------GS-------------------------ITCEGRD----DAAEFADIRSAMKVLQF 447 (750)
Q Consensus 422 -------------------------~~-------------------------~~~~~~~----d~~~f~~~~~a~~~~gf 447 (750)
|. ..+++.+ |+.+|..+.+||+++||
T Consensus 172 LLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~~~~~al~~lg~ 251 (653)
T cd01379 172 LLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFEQIEQCFRVIGF 251 (653)
T ss_pred eccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHHHHHHHHHHcCC
Confidence 10 1122333 46889999999999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCcchhhh-------hcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHH
Q psy14295 448 SDEDIWDVFKLLAAVLHTGNINFEQF-------CINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLI 520 (750)
Q Consensus 448 ~~~e~~~i~~~~~~~l~~gn~~feql-------ciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li 520 (750)
+++|+..||+|+|+||||||+.|++. +...+|+.. --....++..+.++.. +.+.+..+... +. .+
T Consensus 252 ~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~-l~~~A~LLgv~~~~L~-~~L~~~~~~~~-ge----~i 324 (653)
T cd01379 252 TDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAA-LENAASLLCIRSDELQ-EALTSHCVVTR-GE----TI 324 (653)
T ss_pred CHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHH-HHHHHHHhCCCHHHHH-HHhcccEEEeC-Cc----ee
Confidence 99999999999999999999999763 133343321 1244556666666655 44544433221 11 11
Q ss_pred HhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCC----CCCCCeeeecccceEEeecccchhh-hhhHHH
Q psy14295 521 AIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKS----DINTSFGLNHFAGVVFYDTRERDRV-LTRNIL 595 (750)
Q Consensus 521 ~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v 595 (750)
.+|..+-...+....++|+.|+.+|.|+...++. .+..++. ......||+++.|++.++.+.-+++ ..-+..
T Consensus 325 -~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~--~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 401 (653)
T cd01379 325 -VRHNTVEKATDARDAMAKALYGRLFSWIVNRINS--LLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIANE 401 (653)
T ss_pred -eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhHH
Confidence 2455666677777888999999999999988743 3322221 1245899999999999998866665 444556
Q ss_pred hhhhhhhhH
Q psy14295 596 VLQKNIRGW 604 (750)
Q Consensus 596 ~IQ~~~Rg~ 604 (750)
.||..+--.
T Consensus 402 kLQ~~f~~~ 410 (653)
T cd01379 402 QIQYYFNQH 410 (653)
T ss_pred HHHHHHHHH
Confidence 777766543
No 37
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.96 E-value=1.5e-29 Score=298.37 Aligned_cols=244 Identities=30% Similarity=0.476 Sum_probs=175.4
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG----------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g----------- 421 (750)
||||||||||++|.+|+||+.+++..++|+++|+++||||||||||||++|+||||||||++|+||..|
T Consensus 97 sGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yL 176 (717)
T cd01382 97 SGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYL 176 (717)
T ss_pred ecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCEeEEEEEEEe
Confidence 799999999999999999999998889999999999999999999999999999999999999999765
Q ss_pred ------------------------C-----------------------cc---------------------------ccc
Q psy14295 422 ------------------------G-----------------------SI---------------------------TCE 427 (750)
Q Consensus 422 ------------------------~-----------------------~~---------------------------~~~ 427 (750)
| .. .++
T Consensus 177 LEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 256 (717)
T cd01382 177 LEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNRKSPEHLKKGALKDP 256 (717)
T ss_pred ccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccccccccccccccCCC
Confidence 1 00 124
Q ss_pred CCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhhhcc-----c--c-hhHHHHHHHHHhhhhhHhhhh
Q psy14295 428 GRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCIN-----Y--A-NENLQQFFVQHIFKLEQEEYN 499 (750)
Q Consensus 428 ~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlciN-----~--~-nE~lq~~~~~~~f~~e~~~y~ 499 (750)
+.+|..+|..+.+||+++||+++|+..||+|+|+||||||+.|.+-.-+ . + .+.++ ....++..+.++..
T Consensus 257 ~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~ 334 (717)
T cd01382 257 LLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLE--YCAELLGLDQDDLR 334 (717)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHH--HHHHHcCCCHHHHH
Confidence 5689999999999999999999999999999999999999999762110 1 1 11221 33444444444433
Q ss_pred hhccccccccccChHHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceE
Q psy14295 500 VEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVV 579 (750)
Q Consensus 500 ~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V 579 (750)
+.+....+.-.....--+. ..+|..+-...+....++|+.|+.+|+|+...++. .+.... .....||+++.|++
T Consensus 335 -~~l~~r~~~~~~g~~~~~~-i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~--~l~~~~--~~~~IgiLDIfGFE 408 (717)
T cd01382 335 -VSLTTRVMLTTAGGAKGTV-IKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQ--CFPFET--SSNFIGVLDIAGFE 408 (717)
T ss_pred -HHHhheEEecccccCCCce-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCC--CCcEEEEEeccccc
Confidence 2222211110000000000 01233444555666778999999999999998843 333222 24679999999999
Q ss_pred Eeecccchhh-hhhHHHhhhhhhhhH
Q psy14295 580 FYDTRERDRV-LTRNILVLQKNIRGW 604 (750)
Q Consensus 580 ~Yd~~~R~~~-l~~a~v~IQ~~~Rg~ 604 (750)
.++.+.-+++ .+=+...||..+--.
T Consensus 409 ~f~~NsfEQLcINyaNEkLQ~~f~~~ 434 (717)
T cd01382 409 YFEHNSFEQFCINYCNEKLQQFFNER 434 (717)
T ss_pred cCCCCCHHHHhhhhhHHHHHHHHHHH
Confidence 9998866655 334555777766443
No 38
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.96 E-value=1.9e-29 Score=298.23 Aligned_cols=245 Identities=24% Similarity=0.258 Sum_probs=169.8
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCcc--hhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC---------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKHS--WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG--------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g--------- 421 (750)
||||||||||++|.+|+|||.+++..+ ...++|+++||||||||||||++|+||||||||++|+||..|
T Consensus 92 SGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i~~ 171 (767)
T cd01386 92 LGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQT 171 (767)
T ss_pred ecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEEEEEE
Confidence 799999999999999999999987543 345689999999999999999999999999999999999776
Q ss_pred --------------------------C-------------------------cccccCCCchhhHHHHHHHHHHcCCChh
Q psy14295 422 --------------------------G-------------------------SITCEGRDDAAEFADIRSAMKVLQFSDE 450 (750)
Q Consensus 422 --------------------------~-------------------------~~~~~~~~d~~~f~~~~~a~~~~gf~~~ 450 (750)
| +....+.+|+++|..+.+||+++||+++
T Consensus 172 yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~Al~~lGfs~~ 251 (767)
T cd01386 172 MLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVLGISEG 251 (767)
T ss_pred EecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHHHHHHcCCCHH
Confidence 1 0012246788999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcchhhh--hcccchh-HHHHHHHHHhhhhhHhhhhhhccccccccccChHHH--------HHH
Q psy14295 451 DIWDVFKLLAAVLHTGNINFEQF--CINYANE-NLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDA--------LDL 519 (750)
Q Consensus 451 e~~~i~~~~~~~l~~gn~~feql--ciN~~nE-~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~--------l~l 519 (750)
|+..||+|+|+||||||+.|.+- ...++|+ .++ .+..++..+.+++. +.+....+....++-. -+.
T Consensus 252 e~~~If~iLaaILhLGNi~f~~~~~~~~~~~~~~~~--~vA~LLgv~~~~L~-~al~~~~~~~~~~~~~~~~~~~~~~~~ 328 (767)
T cd01386 252 EQRAIWRVLAAIYHLGAAGATKVAGRKQFARPEWAQ--KAAELLGCPLEELS-SATFKHTLRGGINQMTTGPQRPGLSDT 328 (767)
T ss_pred HHHHHHHHHHHHHhccCceeeecCCccccCCHHHHH--HHHHHhCCCHHHHH-HHhcccEEeecceeeeccccccccccc
Confidence 99999999999999999999761 1223332 222 45556666655555 2221111100000000 000
Q ss_pred HHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeec------ccchhh-hhh
Q psy14295 520 IAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDT------RERDRV-LTR 592 (750)
Q Consensus 520 i~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~------~~R~~~-l~~ 592 (750)
...+.......+....++|+.|+.+|.|+...++ ..+..+.. .....||+|+.|++.++. +.-+++ ..-
T Consensus 329 -~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN--~~l~~~~~-~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINy 404 (767)
T cd01386 329 -ETSSGLKMTAVECLEGMASGLYSELFAAVVSLIN--RSISSSHH-SIASIMLVDTPGFQNPASQGKDRAATFEELCHNY 404 (767)
T ss_pred -cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCC-CCcEEEEEecccccccccccccCCCCHHHHhhhh
Confidence 0001112233444566899999999999998874 44333322 245899999999999985 333443 444
Q ss_pred HHHhhhhhhhhH
Q psy14295 593 NILVLQKNIRGW 604 (750)
Q Consensus 593 a~v~IQ~~~Rg~ 604 (750)
+...+|..+--.
T Consensus 405 aNEkLQq~f~~~ 416 (767)
T cd01386 405 LQERLQLLFHHR 416 (767)
T ss_pred hHHHHHHHHHHH
Confidence 556777766443
No 39
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.96 E-value=3.9e-29 Score=293.17 Aligned_cols=237 Identities=35% Similarity=0.505 Sum_probs=176.6
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCC-cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGK-HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG---------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g---------- 421 (750)
||||||||||++|.+|+||+.+++. .++++++|+++||||||||||||++|+||||||||++|+|+. |
T Consensus 93 sGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~~-g~i~Ga~i~~y 171 (677)
T cd01387 93 SGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLEG-GVIVGAITSQY 171 (677)
T ss_pred EcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEecC-CcEeEEEEEEE
Confidence 7999999999999999999999754 457999999999999999999999999999999999999962 3
Q ss_pred -------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChhhH
Q psy14295 422 -------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDEDI 452 (750)
Q Consensus 422 -------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~ 452 (750)
+...+++.+|+++|..+.+||+++||+++|+
T Consensus 172 LLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~ 251 (677)
T cd01387 172 LLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVLGFSSEDQ 251 (677)
T ss_pred ecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHHHHHHcCCCHHHH
Confidence 1223457789999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhhh------cccchh-HHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhch
Q psy14295 453 WDVFKLLAAVLHTGNINFEQFC------INYANE-NLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQL 525 (750)
Q Consensus 453 ~~i~~~~~~~l~~gn~~feqlc------iN~~nE-~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~ 525 (750)
..||+|+|+|||+||+.|.+-. .-..|+ .++ ....++..+.+++. +.+....+... +.. ..+|.
T Consensus 252 ~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~lt~~~~~~~-~e~-----i~~~~ 322 (677)
T cd01387 252 DSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQ--AVAELLQISPEGLQ-KAITFKVTETR-REK-----IFTPL 322 (677)
T ss_pred HHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHH--HHHHHhCCCHHHHH-HHhccCeEEeC-Cce-----EeccC
Confidence 9999999999999999997532 111222 122 33455555555544 33433322111 110 12455
Q ss_pred hhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhhhhhh
Q psy14295 526 NIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQKNIRG 603 (750)
Q Consensus 526 gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~~~Rg 603 (750)
.+-...+....++|+.|+.+|.|+...++ ..+..+. .....||+++.|++.++.+.-+++ ..-+...||..+--
T Consensus 323 ~~~~a~~~rdalak~lY~~lF~wiV~~iN--~~l~~~~--~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 323 TVESAVDARDAIAKVLYALLFNWLITRVN--ALVSPTQ--DTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCC--CCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 66666677777899999999999998874 3333222 245899999999999998866665 33455577766544
No 40
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.96 E-value=4.1e-29 Score=294.83 Aligned_cols=239 Identities=36% Similarity=0.558 Sum_probs=181.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCC-cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCC---------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGK-HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGG--------- 422 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~--------- 422 (750)
||||||||||++|.+|+||+.+++. .++++++|+++||+|||||||||++|+||||||||++|+||..|.
T Consensus 92 sGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~y 171 (679)
T cd00124 92 SGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITTY 171 (679)
T ss_pred ecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEEEEEEE
Confidence 7999999999999999999999875 578999999999999999999999999999999999999997661
Q ss_pred --------------------------------------------------cccccCCCchhhHHHHHHHHHHcCCChhhH
Q psy14295 423 --------------------------------------------------SITCEGRDDAAEFADIRSAMKVLQFSDEDI 452 (750)
Q Consensus 423 --------------------------------------------------~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~ 452 (750)
...+++++|..+|.++.+||+++||+++|+
T Consensus 172 LLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~ 251 (679)
T cd00124 172 LLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEI 251 (679)
T ss_pred EcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHHHHHcCCCHHHH
Confidence 112367899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhhh------cccchhH-HHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhch
Q psy14295 453 WDVFKLLAAVLHTGNINFEQFC------INYANEN-LQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQL 525 (750)
Q Consensus 453 ~~i~~~~~~~l~~gn~~feqlc------iN~~nE~-lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~ 525 (750)
..||+|+|+||||||+.|.+-. +-.+|+. ++ ....++..+.++.. +.+....+... ++. ..+|.
T Consensus 252 ~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~~~-----~~~~~ 322 (679)
T cd00124 252 ESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLS--KAAELLGLDPEELE-EALTYKVTKVG-GEV-----ITIPL 322 (679)
T ss_pred HHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHH--HHHHHhCCCHHHHH-HHhhccEEEeC-Cce-----EEecC
Confidence 9999999999999999997531 2233322 22 34455655555555 44443333221 110 12455
Q ss_pred hhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhhhh-hHHHhhhhhhhh
Q psy14295 526 NIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRVLT-RNILVLQKNIRG 603 (750)
Q Consensus 526 gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~l~-~a~v~IQ~~~Rg 603 (750)
.+-...+....++|+.|+.+|.|+...++ ..+..+ .......||+|+.|++.++.+..+++.- -+...+|..+--
T Consensus 323 ~~~~a~~~rdalak~lY~~lF~wiV~~iN--~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~ 398 (679)
T cd00124 323 TKEEAVDSRDSLAKALYSRLFDWIVSRIN--SSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQ 398 (679)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHH
Confidence 55566666777899999999999998873 333322 2335689999999999999986666533 344566666543
No 41
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.96 E-value=5e-29 Score=293.48 Aligned_cols=239 Identities=39% Similarity=0.584 Sum_probs=178.9
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCC---cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC--------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGK---HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG-------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g-------- 421 (750)
|||||||||+++|.+|+||+.+++. .++++++|+++||||||||||||++|+||||||||++++||..|
T Consensus 98 sGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~ 177 (677)
T smart00242 98 SGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGAKIE 177 (677)
T ss_pred ecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcEeEEEEE
Confidence 7999999999999999999999875 56899999999999999999999999999999999999999765
Q ss_pred ---------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChh
Q psy14295 422 ---------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDE 450 (750)
Q Consensus 422 ---------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~ 450 (750)
+...+++.+|+++|.++.+||+.+||+++
T Consensus 178 ~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~ 257 (677)
T smart00242 178 TYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFKETLNAMRVLGFSEE 257 (677)
T ss_pred EeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHH
Confidence 12345678899999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcchhhhhc-----ccchh-HHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhc
Q psy14295 451 DIWDVFKLLAAVLHTGNINFEQFCI-----NYANE-NLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQ 524 (750)
Q Consensus 451 e~~~i~~~~~~~l~~gn~~feqlci-----N~~nE-~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~ 524 (750)
|+..||+|+|+||||||+.|.+-.- -..|+ .++ ....++..+.++.. +.+....+... ++. ..+|
T Consensus 258 e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e~-----~~~~ 328 (677)
T smart00242 258 EQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELE--NAAELLGVDPEELE-KALTKRKIKTG-GEV-----ITKP 328 (677)
T ss_pred HHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHH--HHHHHhCCCHHHHH-HHhcccEEEeC-Cce-----EEec
Confidence 9999999999999999999965321 02222 222 23445555544444 33332222211 110 1244
Q ss_pred hhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhhh-hhHHHhhhhhhhh
Q psy14295 525 LNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRVL-TRNILVLQKNIRG 603 (750)
Q Consensus 525 ~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~l-~~a~v~IQ~~~Rg 603 (750)
..+-...+....++|+.|+.+|.|+...++ ..+..+. ......||.++.|++.++.+.-+++. .=+...||..+--
T Consensus 329 ~~~~~a~~~rd~lak~lY~~lF~wiV~~iN--~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~ 405 (677)
T smart00242 329 LNVEQALDARDALAKALYSRLFDWLVKRIN--KSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQ 405 (677)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHH
Confidence 555556666677899999999999998873 3333222 34568999999999999988666653 3344577766543
No 42
>KOG0161|consensus
Probab=99.96 E-value=2.6e-29 Score=311.69 Aligned_cols=222 Identities=38% Similarity=0.555 Sum_probs=166.2
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc-------chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC----
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH-------SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG---- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g---- 421 (750)
+||||||||++||.||+|||.|++.. +.+|++|+++||+|||||||+||+|+|||||||||+|+||..|
T Consensus 174 TGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~ 253 (1930)
T KOG0161|consen 174 TGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAG 253 (1930)
T ss_pred ecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccch
Confidence 68999999999999999999997632 6799999999999999999999999999999999999999877
Q ss_pred -------------------------------------------------------CcccccCCCchhhHHHHHHHHHHcC
Q psy14295 422 -------------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQ 446 (750)
Q Consensus 422 -------------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~g 446 (750)
+-.+++|.||.++|..+.+||++||
T Consensus 254 a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~~i~g~dd~eef~~t~~a~~ilg 333 (1930)
T KOG0161|consen 254 ADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGESTIPGVDDAEEFQETDEAMDILG 333 (1930)
T ss_pred hhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccCCCCCcchHHHHHHHHHHHHHhC
Confidence 2338899999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH---HHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhh
Q psy14295 447 FSDEDIWDVFKLLAAVLHTGNINFEQFCINYANENLQQ---FFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIK 523 (750)
Q Consensus 447 f~~~e~~~i~~~~~~~l~~gn~~feqlciN~~nE~lq~---~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~ 523 (750)
|+++|+.+||+|+++|+|+||+.|.+---+=..+..+. ...-+.+....+++. -++..+.+... + -...+
T Consensus 334 fs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~-~al~~priKvg-~-----e~v~k 406 (1930)
T KOG0161|consen 334 FSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFL-KALLRPRIKVG-R-----EWVSK 406 (1930)
T ss_pred CCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHH-HHhcccceecc-c-----hhhhh
Confidence 99999999999999999999999977320000111110 111222222222222 12222222110 0 01123
Q ss_pred chhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc
Q psy14295 524 QLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 524 ~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~ 584 (750)
...+-..+.....++++.|+.+|.|+...+ |..+..+ .....+.||.++||+..++.+
T Consensus 407 ~q~~~q~~~~v~alAk~lYerlF~wlV~ri--N~sld~~-~~~~~fIgvLDiaGFEIfe~n 464 (1930)
T KOG0161|consen 407 AQNVEQVLFAVEALAKALYERLFGWLVKRI--NKSLDSK-QQRDYFIGVLDIAGFEIFEFN 464 (1930)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhc-cccCCcceeeeeccccccCcC
Confidence 344555556666789999999999998887 4555544 445679999999999999998
No 43
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.94 E-value=3.9e-27 Score=280.25 Aligned_cols=240 Identities=39% Similarity=0.573 Sum_probs=168.1
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc-----chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH-----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG------ 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g------ 421 (750)
+||||+|||+++|.+|+||+.++... .+++++|++++|||||||||||.+|+||||||||++++||..|
T Consensus 91 sGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~~ 170 (689)
T PF00063_consen 91 SGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGAK 170 (689)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEE
T ss_pred ccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEecccccccccc
Confidence 79999999999999999999998654 4899999999999999999999999999999999999999766
Q ss_pred -----------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCC
Q psy14295 422 -----------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFS 448 (750)
Q Consensus 422 -----------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~ 448 (750)
+...+++.+|..+|..+..||+.+||+
T Consensus 171 i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~al~~lg~~ 250 (689)
T PF00063_consen 171 IETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQELKDALKTLGFS 250 (689)
T ss_dssp EEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHHHHHHHHTT--
T ss_pred eecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhhhhhhccccCc
Confidence 122456788999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCcchhhhh----cccchh-HHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhh
Q psy14295 449 DEDIWDVFKLLAAVLHTGNINFEQFC----INYANE-NLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIK 523 (750)
Q Consensus 449 ~~e~~~i~~~~~~~l~~gn~~feqlc----iN~~nE-~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~ 523 (750)
++|+.+||+|+++||||||+.|+.-- .-..|+ .++ ....++..+.+++. ..+....+... ++. ..+
T Consensus 251 ~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e~-----~~~ 321 (689)
T PF00063_consen 251 DEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQ--KAAELLGVDSEELE-KALTTRTIKVG-GET-----VTK 321 (689)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHH--HHHHHTTS-HHHHH-HHHHSEEEEST-TSE-----EEE
T ss_pred hhHHHHHHHHHHHHhhhccccccccccccceeechHHHHH--HhhhhcCCCHHHHH-HHHhhcccccc-ccc-----ccc
Confidence 99999999999999999999997633 111111 222 33444444444333 22222111110 000 013
Q ss_pred chhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhhhh-hHHHhhhhhhh
Q psy14295 524 QLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRVLT-RNILVLQKNIR 602 (750)
Q Consensus 524 ~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~l~-~a~v~IQ~~~R 602 (750)
|...-...+..+.++|+.|+.+|.||...+ |..+..+........||.++.|++.+..+.-+++.- =+...||..+-
T Consensus 322 ~~~~~~a~~~rdalak~LY~~LF~wIV~~i--N~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~ 399 (689)
T PF00063_consen 322 PLSVEQASDARDALAKALYSRLFDWIVERI--NSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFN 399 (689)
T ss_dssp E-BHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhHHHHHHHHhh--hhccccccccccccCcccCccccccccccccccceeeeccccccceee
Confidence 445555566667789999999999999887 344443332345689999999999998876666543 34457777654
Q ss_pred h
Q psy14295 603 G 603 (750)
Q Consensus 603 g 603 (750)
.
T Consensus 400 ~ 400 (689)
T PF00063_consen 400 Q 400 (689)
T ss_dssp H
T ss_pred e
Confidence 3
No 44
>KOG4229|consensus
Probab=99.81 E-value=2.2e-20 Score=223.23 Aligned_cols=260 Identities=33% Similarity=0.479 Sum_probs=192.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHhc-CCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAIS-GKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG---------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g---------- 421 (750)
++|||+|||++++.+++||+.|+ +..+|+|++||.++|+||+||||+|.+|+|||||||||.++|.++|
T Consensus 154 sGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki~~y 233 (1062)
T KOG4229|consen 154 SGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKIVEY 233 (1062)
T ss_pred ecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchHHHH
Confidence 78999999999999999999999 8999999999999999999999999999999999999999999876
Q ss_pred -------------------------------------------------Ccccc-cCCCchhhHHHHHHHHHHcCCChhh
Q psy14295 422 -------------------------------------------------GSITC-EGRDDAAEFADIRSAMKVLQFSDED 451 (750)
Q Consensus 422 -------------------------------------------------~~~~~-~~~~d~~~f~~~~~a~~~~gf~~~e 451 (750)
+..++ .+.+|..+|.....+|.++||.+.+
T Consensus 234 llEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v~~f~~~~ 313 (1062)
T KOG4229|consen 234 LLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQFIRLEAAMSVVGFTDKV 313 (1062)
T ss_pred HHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhHHHHHHHHHHhccchhH
Confidence 12355 6888999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchhhhhcc------cchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhch
Q psy14295 452 IWDVFKLLAAVLHTGNINFEQFCIN------YANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQL 525 (750)
Q Consensus 452 ~~~i~~~~~~~l~~gn~~feqlciN------~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~ 525 (750)
+..||++++++||+||++|.+...- ..|+..-+ .+..++....+.+. ++++. .+ +...-+++. .|.
T Consensus 314 ~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~-~vA~lL~~~~~~l~-~alt~----~~-~~~~ge~~~-~~l 385 (1062)
T KOG4229|consen 314 LGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVE-RVACLLLIKEKLLQ-EALTA----RV-NVTRGELLL-APL 385 (1062)
T ss_pred HHHHHHhcccceeecceeHHhhhcccccchhcccchHHH-HHHHHhhcCHHHhh-hhhcc----cc-eeeehhhhh-hhh
Confidence 9999999999999999999985532 11111111 11122222212221 22211 11 112222222 356
Q ss_pred hhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCC-CCCCeeeecccceEEeecccchh-hhhhHHHhhhhhhhh
Q psy14295 526 NIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSD-INTSFGLNHFAGVVFYDTRERDR-VLTRNILVLQKNIRG 603 (750)
Q Consensus 526 gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~F~I~H~aG~V~Yd~~~R~~-~l~~a~v~IQ~~~Rg 603 (750)
.+-...|...+++|+.+..+|.|+...+ |....+++.. .....||.+..|+..|..+...+ +..-+...+|..+..
T Consensus 386 ~~~~A~d~rda~ak~ly~~lf~~iv~rI--n~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnq 463 (1062)
T KOG4229|consen 386 LVERAVDVRDAMAKTLYGRLFDWIVLRI--NAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQ 463 (1062)
T ss_pred hHHHhccCchHHHHHHHHHHHHHHHhhH--HhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888899999999997776655 4444333321 24689999999999995554444 456677899999988
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy14295 604 WVYRRRYKRLRAATMTIQK 622 (750)
Q Consensus 604 ~~~Rr~~~~~r~aai~IQs 622 (750)
...+..+.+.....+.-+.
T Consensus 464 hIf~~Eq~ey~~e~I~w~~ 482 (1062)
T KOG4229|consen 464 HIFALEQEEYDNESIDWRN 482 (1062)
T ss_pred HHHHHhHHHhhhcCCCeee
Confidence 8888777776555444443
No 45
>KOG0520|consensus
Probab=98.44 E-value=3.3e-07 Score=108.87 Aligned_cols=124 Identities=20% Similarity=0.278 Sum_probs=108.4
Q ss_pred hhHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHhhh
Q psy14295 591 TRNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRMR----------VGYMRLQALIRSRLLSHRFRHLR 660 (750)
Q Consensus 591 ~~a~v~IQ~~~Rg~~~Rr~~~~~r~aai~IQs~~Rg~~~R~~~~~~r----------~a~~~IQs~~R~~~~R~~~~~~~ 660 (750)
..++..||.++|||..|+.+...++-++.||++.||+..|+.|.++- .++..+|.-+||+..+.......
T Consensus 810 ~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~ 889 (975)
T KOG0520|consen 810 PAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQE 889 (975)
T ss_pred hhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccc
Confidence 34677999999999999999999999999999999999999998773 35778888999998888888888
Q ss_pred hhHHHHHHHHHhHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 661 GHIVGLQARARGYLTR--RMYAQKMWAIVKIQAHVRRMIAQRHYQKLQFEYQSQIE 714 (750)
Q Consensus 661 ~aai~IQa~~Rg~laR--r~y~~~r~Aai~IQs~~R~~~aRr~y~~lk~~~~~~~~ 714 (750)
.+++.||..+|-|..= .-|.++-+|+++||+.+|.+.++..|+++.......+.
T Consensus 890 ~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~~~~~~~~ 945 (975)
T KOG0520|consen 890 TAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLLVYEQYQE 945 (975)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999975 66777789999999999999999999998766655544
No 46
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.35 E-value=8e-07 Score=89.44 Aligned_cols=89 Identities=22% Similarity=0.210 Sum_probs=66.2
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhH
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQ 118 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~ 118 (750)
||..+..++.+|+ .+.|+||+.. |+||||||. +..- .. .... +.| ...+.
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~y----G~tGsGKT~---Tm~G-------------~~--~~~G----iip---~~~~~ 57 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAY----GQTGSGKTY---TMEG-------------KR--EGAG----IIP---RTVTD 57 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEE----CCCCCcceE---ecCC-------------CC--CCCC----cch---HHHHH
Confidence 9998888998888 5799999999 999999998 4311 00 0000 111 12233
Q ss_pred HHhhchHHHHhc-CcccCCCCCCCCccceEEEEEecCCce
Q psy14295 119 ILEANPILEAFG-NAKTIRNDNSSRFGKYIDIHFNSQGVI 157 (750)
Q Consensus 119 il~sn~iLEaFG-NAkT~~N~NSSRfgk~~~l~f~~~g~l 157 (750)
+++.....+++. +|.|.+|++|||+..+++|++......
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecC
Confidence 667777888899 999999999999999999999765443
No 47
>KOG0520|consensus
Probab=97.89 E-value=2.7e-05 Score=93.10 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=98.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHhHHHHHHHHHHHh
Q psy14295 615 AATMTIQKYWKGWAQRRRYQRMRVGYMRLQALIRSRLLSHRFRHLR----------GHIVGLQARARGYLTRRMYAQKMW 684 (750)
Q Consensus 615 ~aai~IQs~~Rg~~~R~~~~~~r~a~~~IQs~~R~~~~R~~~~~~~----------~aai~IQa~~Rg~laRr~y~~~r~ 684 (750)
.++..||.++|+|+.|+.|.-.+..++.||+.+||+..|+.|..+. .++-.+|+.+|||..|+.+.+.-.
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~ 890 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQET 890 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccc
Confidence 4688999999999999999999999999999999999999997544 356788999999999999998888
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 685 AIVKIQAHVRRMIAQ--RHYQKLQFEYQSQIEALKLKRKEER 724 (750)
Q Consensus 685 Aai~IQs~~R~~~aR--r~y~~lk~~~~~~~~~~r~~~~~e~ 724 (750)
|+++||...|-|..- ..|+++.+++..+|...|--++..+
T Consensus 891 a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qq 932 (975)
T KOG0520|consen 891 AATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQ 932 (975)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999877 8899999999999999987766643
No 48
>KOG2128|consensus
Probab=97.37 E-value=0.0029 Score=78.02 Aligned_cols=114 Identities=27% Similarity=0.455 Sum_probs=87.5
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHH-----HHHhhhhhhhhHHHHHHHHhhh-------HHHHHHHHHHHHHHH---HHHH-
Q psy14295 593 NILVLQKNIRGWVYRRRYKRLRA-----ATMTIQKYWKGWAQRRRYQRMR-------VGYMRLQALIRSRLL---SHRF- 656 (750)
Q Consensus 593 a~v~IQ~~~Rg~~~Rr~~~~~r~-----aai~IQs~~Rg~~~R~~~~~~r-------~a~~~IQs~~R~~~~---R~~~- 656 (750)
...-.|+..||...+.....+.. -..++|+..||+..|..+.... ..+..+|+.|||++. +..|
T Consensus 509 ~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~ 588 (1401)
T KOG2128|consen 509 SLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYL 588 (1401)
T ss_pred HHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHH
Confidence 33457777888777765544332 2345599999999888765442 368899999999984 2333
Q ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 657 RHLRGHIVGLQARARGYLTRRMYAQKM-------WAIVKIQAHVRRMIAQRHYQKLQ 706 (750)
Q Consensus 657 ~~~~~aai~IQa~~Rg~laRr~y~~~r-------~Aai~IQs~~R~~~aRr~y~~lk 706 (750)
......++.+|++.||++.|+.|.+.. .++++||+..|.+.+|..|+.+.
T Consensus 589 ~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 589 DSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 344568999999999999999988774 58999999999999999999985
No 49
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.28 E-value=0.00036 Score=44.72 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy14295 684 WAIVKIQAHVRRMIAQRHY 702 (750)
Q Consensus 684 ~Aai~IQs~~R~~~aRr~y 702 (750)
+||++||++||++++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3555555555555555555
No 50
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.13 E-value=0.0005 Score=44.04 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhHHHHHHHH
Q psy14295 661 GHIVGLQARARGYLTRRMYA 680 (750)
Q Consensus 661 ~aai~IQa~~Rg~laRr~y~ 680 (750)
++++.||++||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999998874
No 51
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.18 E-value=0.0045 Score=41.77 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHhHHHHHHH
Q psy14295 661 GHIVGLQARARGYLTRRMY 679 (750)
Q Consensus 661 ~aai~IQa~~Rg~laRr~y 679 (750)
.+++.||++||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555544
No 52
>KOG2128|consensus
Probab=96.04 E-value=0.09 Score=65.48 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=69.6
Q ss_pred hhhhhhhhHHHHHHHHHHH-------HHHHhhhhhhhhHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh----
Q psy14295 596 VLQKNIRGWVYRRRYKRLR-------AATMTIQKYWKGWAQ----RRRYQRMRVGYMRLQALIRSRLLSHRFRHLR---- 660 (750)
Q Consensus 596 ~IQ~~~Rg~~~Rr~~~~~r-------~aai~IQs~~Rg~~~----R~~~~~~r~a~~~IQs~~R~~~~R~~~~~~~---- 660 (750)
.+|+..||+..|..+.... -...-||+.|||++. ...+......++.+|++.|+.+.|+.|.+..
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~ 619 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFK 619 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4589999999987776533 357889999999984 2223334567999999999999998775443
Q ss_pred ---hhHHHHHHHHHhHHHHHHHHHHH
Q psy14295 661 ---GHIVGLQARARGYLTRRMYAQKM 683 (750)
Q Consensus 661 ---~aai~IQa~~Rg~laRr~y~~~r 683 (750)
.+++.||++.|++.+|..|....
T Consensus 620 ~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 620 DNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HhhhhHHHHHHHHHhcccchHHHHHh
Confidence 58999999999999999999875
No 53
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.73 E-value=0.01 Score=40.04 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q psy14295 682 KMWAIVKIQAHVRRMIAQRHYQ 703 (750)
Q Consensus 682 ~r~Aai~IQs~~R~~~aRr~y~ 703 (750)
+..+|++||+.||++++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999984
No 54
>KOG0925|consensus
Probab=94.92 E-value=0.022 Score=63.83 Aligned_cols=66 Identities=27% Similarity=0.415 Sum_probs=46.3
Q ss_pred EEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 8 VAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 8 v~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.++|||...| |++.+.+.++. +.+||-+-+ -+.-|.--..||+||++ ||+|||||+ .....++.|-
T Consensus 22 k~~Npf~~~p-~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~v----GetgsGKtt--QiPq~~~~~~ 87 (699)
T KOG0925|consen 22 KAINPFNGKP-YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLV----GETGSGKTT--QIPQFVLEYE 87 (699)
T ss_pred hhcCCCCCCc-CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEE----ecCCCCccc--cCcHHHHHHH
Confidence 3499999888 57776666653 446775543 34556777889999999 999999998 2334444443
No 55
>KOG0922|consensus
Probab=89.14 E-value=0.56 Score=54.99 Aligned_cols=124 Identities=21% Similarity=0.272 Sum_probs=70.2
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhH
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQ 118 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~ 118 (750)
||...++-...+ ..||.+||- ||+|||||+ .+-+|| ....-.....+-|..|.. ...
T Consensus 52 I~~~r~~il~~v---e~nqvlIvi----GeTGsGKST------QipQyL-------~eaG~~~~g~I~~TQPRR---VAa 108 (674)
T KOG0922|consen 52 IYKYRDQILYAV---EDNQVLIVI----GETGSGKST------QIPQYL-------AEAGFASSGKIACTQPRR---VAA 108 (674)
T ss_pred HHHHHHHHHHHH---HHCCEEEEE----cCCCCCccc------cHhHHH-------HhcccccCCcEEeecCch---HHH
Confidence 565555553333 458998888 999999998 577888 322111122266766653 222
Q ss_pred HHhhchHHHHhcCcccCCCCCCCCc----cceEEEEEecCCceeeeeeeeeecccc-eeeecCCCCCcchhh
Q psy14295 119 ILEANPILEAFGNAKTIRNDNSSRF----GKYIDIHFNSQGVIEGAKIEQYLLEKS-RIVSQSKDERNYHVF 185 (750)
Q Consensus 119 il~sn~iLEaFGNAkT~~N~NSSRf----gk~~~l~f~~~g~l~ga~i~~yLLEks-RVv~~~~~ErnfHIF 185 (750)
+.-|..|-|..|+---..-.-+=|| ++-+.+.|-.+|.+.-=-+..=+|+|= =|+-....||+-|.=
T Consensus 109 vslA~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TD 180 (674)
T KOG0922|consen 109 VSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTD 180 (674)
T ss_pred HHHHHHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHH
Confidence 4445677777776322221122222 335667776777653333333335554 345567789998864
No 56
>KOG0924|consensus
Probab=88.44 E-value=0.53 Score=55.12 Aligned_cols=123 Identities=20% Similarity=0.299 Sum_probs=73.6
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhH
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQ 118 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~ 118 (750)
||++-++- |.--+.||.|||. ||+|||||+ .+-+|| ..-.-....-+-|..|.. ...
T Consensus 357 vf~~R~~l---l~~ir~n~vvviv----gETGSGKTT------Ql~QyL-------~edGY~~~GmIGcTQPRR---vAA 413 (1042)
T KOG0924|consen 357 VFACRDQL---LSVIRENQVVVIV----GETGSGKTT------QLAQYL-------YEDGYADNGMIGCTQPRR---VAA 413 (1042)
T ss_pred hHHHHHHH---HHHHhhCcEEEEE----ecCCCCchh------hhHHHH-------HhcccccCCeeeecCchH---HHH
Confidence 56655544 3345789999999 999999998 477787 322111222356666643 122
Q ss_pred HHhhchHHHHhcCcccCCCCCCCCc----cceEEEEEecCCceeeeeeeeeecccceeee-cCCCCCcchh
Q psy14295 119 ILEANPILEAFGNAKTIRNDNSSRF----GKYIDIHFNSQGVIEGAKIEQYLLEKSRIVS-QSKDERNYHV 184 (750)
Q Consensus 119 il~sn~iLEaFGNAkT~~N~NSSRf----gk~~~l~f~~~g~l~ga~i~~yLLEksRVv~-~~~~ErnfHI 184 (750)
|.-|-.|-|-.|----..-.-|=|| +.-+.|.|-.+|.+.--++..-+|+|=.|+- ....||.-+.
T Consensus 414 iSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNt 484 (1042)
T KOG0924|consen 414 ISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNT 484 (1042)
T ss_pred HHHHHHHHHHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccch
Confidence 3334445554432211112234455 3446777777888777777777888877654 5667887653
No 57
>KOG4427|consensus
Probab=87.73 E-value=7 Score=46.54 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=27.3
Q ss_pred HHHhhh-hhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14295 655 RFRHLR-GHIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIA 698 (750)
Q Consensus 655 ~~~~~~-~aai~IQa~~Rg~laRr~y~~~r~Aai~IQs~~R~~~a 698 (750)
.|++.+ .+|+.||+.||||++|++|.. .||.-|+..+.
T Consensus 24 ~~qrrr~~aa~~iq~~lrsyl~Rkk~~~------~I~~e~d~~f~ 62 (1096)
T KOG4427|consen 24 SYQRRREAAALFIQRVLRSYLVRKKAQI------EIQEEFDNLFS 62 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhh
Confidence 444444 578999999999999886654 67777776653
No 58
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.22 E-value=0.4 Score=43.91 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.8
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|+ |.||||||+ -++.+.+.+
T Consensus 1 vI~I~----G~~gsGKST---~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIIS----GPPGSGKST---LAKELAERL 23 (121)
T ss_dssp EEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 47888 999999999 777776654
No 59
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.90 E-value=0.48 Score=43.85 Aligned_cols=27 Identities=11% Similarity=0.088 Sum_probs=15.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+...+++|. |++|+|||. ..+.+.+-+
T Consensus 2 ~~~~~~~i~----G~~G~GKT~---~~~~~~~~~ 28 (131)
T PF13401_consen 2 QSQRILVIS----GPPGSGKTT---LIKRLARQL 28 (131)
T ss_dssp -----EEEE----E-TTSSHHH---HHHHHHHHH
T ss_pred CCCcccEEE----cCCCCCHHH---HHHHHHHHh
Confidence 346788888 999999999 555444433
No 60
>KOG0165|consensus
Probab=80.27 E-value=16 Score=43.75 Aligned_cols=162 Identities=11% Similarity=-0.003 Sum_probs=92.1
Q ss_pred hcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecc-cceEEeecccchhhhhhHHHhhhhhhhhHHHH
Q psy14295 529 ALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHF-AGVVFYDTRERDRVLTRNILVLQKNIRGWVYR 607 (750)
Q Consensus 529 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~-aG~V~Yd~~~R~~~l~~a~v~IQ~~~Rg~~~R 607 (750)
.++.+.......++--++.|++..+..+... +..| +|...-.+-.-...-..+-..+|+..+-++.+
T Consensus 477 ~l~~~na~~~~~SvicLLA~L~s~l~~k~~~------------~~~~~~~~L~~~V~S~~~~~~~~Q~~~~k~~~~f~~~ 544 (1023)
T KOG0165|consen 477 YLAVKNANKQVNSVICLLAWLRARLQEKRFI------------QKYHSIKKLEHEVQSCLSQRNRAQSVIQKAVRHFLLR 544 (1023)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHhcccch------------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433344556777889999888654432 2222 12111000000111112234566666766665
Q ss_pred HHHHHHH-----HHHHhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------------------HH
Q psy14295 608 RRYKRLR-----AATMTIQKYWKGWAQRRRYQRMRVGYMRLQALIRSRLLSH--------------------------RF 656 (750)
Q Consensus 608 r~~~~~r-----~aai~IQs~~Rg~~~R~~~~~~r~a~~~IQs~~R~~~~R~--------------------------~~ 656 (750)
+.-..-+ ..+..+|..|+.+..+. ........||.||+-..... .|
T Consensus 545 ~~~R~~~I~i~~~~a~~~~~~w~~~~~~~---~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~R~~~~~e~~~~ 621 (1023)
T KOG0165|consen 545 KKQRKFTIGIIKIQALWRGYSWRKKNDCT---KIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYKRLSAILEALKH 621 (1023)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhhhhccc---ccHHHHHHHHHHHHHhhcccccCcccccceeeeccccchhhhhhhHHH
Confidence 4333222 23444444444443333 33445667888888653322 22
Q ss_pred Hhhh-hhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14295 657 RHLR-GHIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKL 705 (750)
Q Consensus 657 ~~~~-~aai~IQa~~Rg~laRr~y~~~r~Aai~IQs~~R~~~aRr~y~~l 705 (750)
..+. .++..+|...+|-.+++.++....+..-+|+.+|++..++..+-+
T Consensus 622 l~~~~~~~~~~~~n~~~~~a~sie~~~~~~~~~Lr~~~~~~~i~~~Iqv~ 671 (1023)
T KOG0165|consen 622 LEVVTRLSPLCCENMAQSGAISIEKIFVLIRSCLRSIPCMEVIRYAIQVL 671 (1023)
T ss_pred hhHHHHhhHHHhhhhhhhchhhHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 2222 367888999999999998888888999999999999988876655
No 61
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=77.64 E-value=1.8 Score=43.47 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhc-cccccccCCCCCCcceeEeeecCC
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFG-NAKTIRNDNSSRFGKYIDIHFNSQ 420 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~a~~~~n~~~~~~gk~~~~~~~~~ 420 (750)
.|++|+|||..-.-- ..-.|--...-+.+++..+..+++. ++.|..|.+|||+..+++|++...
T Consensus 30 yG~tGsGKT~Tm~G~----~~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~ 94 (186)
T cd01363 30 YGQTGSGKTYTMEGK----REGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGK 94 (186)
T ss_pred ECCCCCcceEecCCC----CCCCCcchHHHHHHHHHHhhccccccccccCCCCccCcccEEEEEEEEEe
Confidence 478899999642100 0000111122333667777777888 899999999999999999999854
No 62
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=77.47 E-value=0.91 Score=49.26 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=21.8
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++.+.+=|- ||||||||. .++.+|..|
T Consensus 29 ~~GE~lgiV----GESGsGKS~---~~~aim~ll 55 (316)
T COG0444 29 KKGEILGIV----GESGSGKSV---LAKAIMGLL 55 (316)
T ss_pred cCCcEEEEE----cCCCCCHHH---HHHHHHhcc
Confidence 445666555 999999999 888888887
No 63
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=77.38 E-value=1.4 Score=40.43 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=21.8
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
......++|. |++|+|||. .++.+.+.+
T Consensus 16 ~~~~~~v~i~----G~~G~GKT~---l~~~i~~~~ 43 (151)
T cd00009 16 LPPPKNLLLY----GPPGTGKTT---LARAIANEL 43 (151)
T ss_pred CCCCCeEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3356789999 999999999 766666655
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=77.23 E-value=0.77 Score=45.00 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=16.5
Q ss_pred hhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 51 KRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 51 ~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+....++|. |++|+|||. -.+.++..+
T Consensus 19 ~~~~~~~~~ll~----G~~G~GKT~---ll~~~~~~~ 48 (185)
T PF13191_consen 19 AQSGSPRNLLLT----GESGSGKTS---LLRALLDRL 48 (185)
T ss_dssp TSS-----EEE-----B-TTSSHHH---HHHHHHHHH
T ss_pred HHcCCCcEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 456677889999 999999999 554444444
No 65
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=76.23 E-value=1 Score=44.49 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=13.2
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
+.|+|. |+||||||+
T Consensus 2 ~~~~i~----G~sGsGKtt 16 (179)
T TIGR02322 2 RLIYVV----GPSGAGKDT 16 (179)
T ss_pred cEEEEE----CCCCCCHHH
Confidence 467888 999999999
No 66
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=74.44 E-value=2.9 Score=43.99 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=19.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....+++. |++|+|||+ .++.+...+
T Consensus 42 ~~~~~~l~----G~~G~GKTt---l~~~l~~~l 67 (269)
T TIGR03015 42 REGFILIT----GEVGAGKTT---LIRNLLKRL 67 (269)
T ss_pred CCCEEEEE----cCCCCCHHH---HHHHHHHhc
Confidence 34578888 999999999 665554444
No 67
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=73.64 E-value=1.1 Score=41.03 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=17.6
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|+ |-+|||||+ .++.+.+.+
T Consensus 1 I~i~----G~~GsGKtT---ia~~L~~~~ 22 (129)
T PF13238_consen 1 IGIS----GIPGSGKTT---IAKELAERL 22 (129)
T ss_dssp EEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CEEE----CCCCCCHHH---HHHHHHHHH
Confidence 6788 999999999 666666653
No 68
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.41 E-value=1.4 Score=40.01 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=19.7
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.++|. |++|+|||+ .++.+...+
T Consensus 2 ~~~~~l~----G~~G~GKTt---l~~~l~~~~ 26 (148)
T smart00382 2 GEVILIV----GPPGSGKTT---LARALAREL 26 (148)
T ss_pred CCEEEEE----CCCCCcHHH---HHHHHHhcc
Confidence 4678888 999999999 766666655
No 69
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=72.89 E-value=1.7 Score=39.97 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.+.|. |+||||||+
T Consensus 14 ~ge~v~I~----GpSGsGKST 30 (107)
T cd00820 14 GKVGVLIT----GDSGIGKTE 30 (107)
T ss_pred CCEEEEEE----cCCCCCHHH
Confidence 34677788 999999999
No 70
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=71.34 E-value=1.4 Score=44.61 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.9
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|+ |++|||||+ ....++.++
T Consensus 3 lilI~----GptGSGKTT---ll~~ll~~~ 25 (198)
T cd01131 3 LVLVT----GPTGSGKST---TLAAMIDYI 25 (198)
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 36777 999999999 666666665
No 71
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=71.25 E-value=1.6 Score=42.43 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=17.7
Q ss_pred CeEEEeecCcccccccccccccccccchhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
...|+|. |+||+|||+ .+..+++
T Consensus 14 g~gvLi~----G~sG~GKSt---lal~L~~ 36 (149)
T cd01918 14 GIGVLIT----GPSGIGKSE---LALELIK 36 (149)
T ss_pred CEEEEEE----cCCCCCHHH---HHHHHHH
Confidence 5788888 999999999 6544443
No 72
>PRK00300 gmk guanylate kinase; Provisional
Probab=71.17 E-value=1.7 Score=43.78 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=19.8
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.|+|. |+||||||+ -++.+...+
T Consensus 4 ~g~~i~i~----G~sGsGKst---l~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLS----GPSGAGKST---LVKALLERD 29 (205)
T ss_pred CCCEEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 45778888 999999999 555555544
No 73
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=70.91 E-value=1.5 Score=36.50 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=15.5
Q ss_pred EEeecCcccccccccccccccccchhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
|.|+ |.+|||||+ -++.+.+.
T Consensus 2 i~i~----G~~gsGKst---~~~~l~~~ 22 (69)
T cd02019 2 IAIT----GGSGSGKST---VAKKLAEQ 22 (69)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHH
Confidence 5666 999999999 55554444
No 74
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=70.59 E-value=1.5 Score=40.27 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.6
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|++. |++|+|||. .++.+.+++
T Consensus 1 ill~----G~~G~GKT~---l~~~la~~l 22 (132)
T PF00004_consen 1 ILLH----GPPGTGKTT---LARALAQYL 22 (132)
T ss_dssp EEEE----SSTTSSHHH---HHHHHHHHT
T ss_pred CEEE----CcCCCCeeH---HHHHHHhhc
Confidence 5666 999999999 888888877
No 75
>KOG0923|consensus
Probab=70.41 E-value=3.3 Score=48.77 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=29.7
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhccc-CCCcccccccCCCC
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLS-NCQPFFIRCIKPNE 112 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s-~~~~~~~~~~~~~~ 112 (750)
-+++|..||. ||+|||||+ .+=+|| .... ......+.|..|..
T Consensus 277 v~e~QVLiI~----GeTGSGKTT------QiPQyL-------~EaGytk~gk~IgcTQPRR 320 (902)
T KOG0923|consen 277 VKEHQVLIIV----GETGSGKTT------QIPQYL-------YEAGYTKGGKKIGCTQPRR 320 (902)
T ss_pred HHhCcEEEEE----cCCCCCccc------cccHHH-------HhcccccCCceEeecCcch
Confidence 4678999999 999999998 477888 2221 11223367877764
No 76
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=70.39 E-value=5.8 Score=45.59 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=40.8
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhcccCC-CcccccccCCCCCChhhHHHhhchHHHHhcC
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNC-QPFFIRCIKPNEFKKPMQILEANPILEAFGN 131 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s~~-~~~~~~~~~~~~~~i~~~il~sn~iLEaFGN 131 (750)
...|=.|+|. ||||+||.. +-+++ ...|.. ...|+ .-+...|.+.++++ |-||+
T Consensus 161 A~s~a~VLI~----GESGtGKEl-------vAr~I-------H~~S~R~~~PFV---avNcaAip~~l~ES----ELFGh 215 (464)
T COG2204 161 APSDASVLIT----GESGTGKEL-------VARAI-------HQASPRAKGPFI---AVNCAAIPENLLES----ELFGH 215 (464)
T ss_pred hCCCCCEEEE----CCCCCcHHH-------HHHHH-------HhhCcccCCCce---eeecccCCHHHHHH----Hhhcc
Confidence 3566779999 999999988 44445 222221 11121 11223455544444 66998
Q ss_pred cccC-CCCCCCCccceEE
Q psy14295 132 AKTI-RNDNSSRFGKYID 148 (750)
Q Consensus 132 AkT~-~N~NSSRfgk~~~ 148 (750)
.|-. .-.+.+|-|+|-.
T Consensus 216 ekGAFTGA~~~r~G~fE~ 233 (464)
T COG2204 216 EKGAFTGAITRRIGRFEQ 233 (464)
T ss_pred cccCcCCcccccCcceeE
Confidence 8832 2345678888754
No 77
>PRK06696 uridine kinase; Validated
Probab=69.74 E-value=2.7 Score=43.40 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=21.9
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..--|.|+ |.||||||+ -++.+.+.|
T Consensus 19 ~~~~~iI~I~----G~sgsGKST---lA~~L~~~l 46 (223)
T PRK06696 19 LTRPLRVAID----GITASGKTT---FADELAEEI 46 (223)
T ss_pred CCCceEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3455667788 999999999 777777666
No 78
>PRK05480 uridine/cytidine kinase; Provisional
Probab=68.14 E-value=2.3 Score=43.24 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=19.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.--|.|+ |.||||||+ -++.+.+.+
T Consensus 5 ~~~iI~I~----G~sGsGKTT---l~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIA----GGSGSGKTT---VASTIYEEL 30 (209)
T ss_pred CCEEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 45567788 999999999 666555544
No 79
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=67.73 E-value=2.8 Score=46.06 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=21.7
Q ss_pred HHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 48 THMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 48 ~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.+.+ ..|||+ |.+|||||+ ..+.++.++
T Consensus 138 ~~~v~~~--~nilI~----G~tGSGKTT---ll~aL~~~i 168 (323)
T PRK13833 138 RSAIDSR--LNIVIS----GGTGSGKTT---LANAVIAEI 168 (323)
T ss_pred HHHHHcC--CeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3444444 469999 999999999 655555554
No 80
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=67.36 E-value=3.2 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=18.8
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|+ |++|||||+ ..+.++.++
T Consensus 82 lilis----G~tGSGKTT---~l~all~~i 104 (264)
T cd01129 82 IILVT----GPTGSGKTT---TLYSALSEL 104 (264)
T ss_pred EEEEE----CCCCCcHHH---HHHHHHhhh
Confidence 57888 999999999 766666665
No 81
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=67.18 E-value=2.3 Score=45.23 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=20.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+...+-+- ||||+|||+ ..+.++.-.
T Consensus 37 ~~ge~~glV----GESG~GKST---lgr~i~~L~ 63 (268)
T COG4608 37 KEGETLGLV----GESGCGKST---LGRLILGLE 63 (268)
T ss_pred cCCCEEEEE----ecCCCCHHH---HHHHHHcCc
Confidence 345566555 999999999 888777766
No 82
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=66.86 E-value=2 Score=43.18 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=14.4
Q ss_pred EEeecCcccccccccccccccccchhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
|.|+ |.||||||+ .++.+..
T Consensus 2 igi~----G~~GsGKST---l~~~l~~ 21 (198)
T cd02023 2 IGIA----GGSGSGKTT---VAEEIIE 21 (198)
T ss_pred EEEE----CCCCCCHHH---HHHHHHH
Confidence 4566 999999999 5544433
No 83
>PRK05541 adenylylsulfate kinase; Provisional
Probab=66.66 E-value=2.3 Score=41.94 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=20.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+....|++. |.||||||+ -++.+...|
T Consensus 5 ~~~~~I~i~----G~~GsGKst---~a~~l~~~l 31 (176)
T PRK05541 5 PNGYVIWIT----GLAGSGKTT---IAKALYERL 31 (176)
T ss_pred CCCCEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 345577777 999999999 666666555
No 84
>PRK00131 aroK shikimate kinase; Reviewed
Probab=66.37 E-value=2.5 Score=40.94 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=20.9
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|++. |.+|||||+ .++.+-+.+
T Consensus 3 ~~~~i~l~----G~~GsGKst---la~~La~~l 28 (175)
T PRK00131 3 KGPNIVLI----GFMGAGKST---IGRLLAKRL 28 (175)
T ss_pred CCCeEEEE----cCCCCCHHH---HHHHHHHHh
Confidence 45788898 999999999 776666655
No 85
>PRK08233 hypothetical protein; Provisional
Probab=66.01 E-value=2.1 Score=42.00 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=18.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|.|+ |.||||||+ -++.+...|
T Consensus 4 ~iI~I~----G~~GsGKtT---la~~L~~~l 27 (182)
T PRK08233 4 KIITIA----AVSGGGKTT---LTERLTHKL 27 (182)
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 456677 999999999 776666655
No 86
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=65.86 E-value=2.2 Score=41.47 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=18.1
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|+ |++|||||+ .++.+.+.+
T Consensus 2 iI~i~----G~~GSGKst---ia~~la~~l 24 (171)
T TIGR02173 2 IITIS----GPPGSGKTT---VAKILAEKL 24 (171)
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 37788 999999999 777665544
No 87
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=65.82 E-value=5.7 Score=51.03 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=16.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
..+|.+||+ ||+|||||+
T Consensus 87 ~~~~VviI~----GeTGSGKTT 104 (1294)
T PRK11131 87 RDHQVVIVA----GETGSGKTT 104 (1294)
T ss_pred HhCCeEEEE----CCCCCCHHH
Confidence 457899999 999999998
No 88
>PRK06762 hypothetical protein; Provisional
Probab=65.55 E-value=2.6 Score=41.04 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.6
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..|+|. |.+|||||+ -++.+.+.+
T Consensus 3 ~li~i~----G~~GsGKST---~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIR----GNSGSGKTT---IAKQLQERL 26 (166)
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 467777 999999999 776665554
No 89
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=65.53 E-value=2.1 Score=43.15 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.1
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|-|+ |.||||||+ -++.+...|
T Consensus 2 IgI~----G~sgSGKTT---la~~L~~~L 23 (194)
T PF00485_consen 2 IGIA----GPSGSGKTT---LAKRLAQIL 23 (194)
T ss_dssp EEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 5677 999999999 888888877
No 90
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=65.37 E-value=2.6 Score=42.82 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=18.3
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+...|.|+ |.||||||+ -++.+...+
T Consensus 5 ~g~vi~I~----G~sGsGKST---l~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIG----GGSGSGKTT---VARKIYEQL 30 (207)
T ss_pred CeEEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 34566778 999999999 555544443
No 91
>KOG0942|consensus
Probab=65.27 E-value=13 Score=45.40 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=19.9
Q ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHH
Q psy14295 657 RHLRGHIVGLQARARGYLTRRMYAQKM 683 (750)
Q Consensus 657 ~~~~~aai~IQa~~Rg~laRr~y~~~r 683 (750)
++..+.|+++|+.|||+.+|++....-
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~~ 52 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLLF 52 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 344467888999999998888666553
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=65.15 E-value=4 Score=41.64 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=24.7
Q ss_pred HHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 46 GYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 46 ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.+.+.....+..|++. |++|+|||. -++.+.+++
T Consensus 28 ~l~~~~~~~~~~~lll~----G~~G~GKT~---la~~~~~~~ 62 (226)
T TIGR03420 28 ALRQLAAGKGDRFLYLW----GESGSGKSH---LLQAACAAA 62 (226)
T ss_pred HHHHHHhcCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 33444345667789998 999999999 666555554
No 93
>PRK14737 gmk guanylate kinase; Provisional
Probab=64.87 E-value=3.7 Score=41.36 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.7
Q ss_pred CeEEEeecCccccccccccc
Q psy14295 56 DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~ 75 (750)
.-.|||+ |.||||||+
T Consensus 4 ~~~ivl~----GpsG~GK~t 19 (186)
T PRK14737 4 PKLFIIS----SVAGGGKST 19 (186)
T ss_pred CeEEEEE----CCCCCCHHH
Confidence 3468888 999999999
No 94
>PRK06547 hypothetical protein; Provisional
Probab=64.87 E-value=4.2 Score=40.45 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=20.4
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
.....-|+|+ |.||||||+ -++.+.+.
T Consensus 12 ~~~~~~i~i~----G~~GsGKTt---~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLID----GRSGSGKTT---LAGALAAR 38 (172)
T ss_pred cCCCEEEEEE----CCCCCCHHH---HHHHHHHH
Confidence 4556778888 999999999 66555443
No 95
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=64.77 E-value=2.5 Score=42.24 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=13.3
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
+.|+|. |.||||||+
T Consensus 3 ~~i~l~----G~sGsGKsT 17 (186)
T PRK10078 3 KLIWLM----GPSGSGKDS 17 (186)
T ss_pred cEEEEE----CCCCCCHHH
Confidence 467888 999999999
No 96
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=64.69 E-value=2.5 Score=44.73 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.8
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|+||||||+ +.|++-+-+
T Consensus 34 GpSGsGKTT---tLkMINrLi 51 (309)
T COG1125 34 GPSGSGKTT---TLKMINRLI 51 (309)
T ss_pred CCCCCcHHH---HHHHHhccc
Confidence 999999999 777666555
No 97
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=64.62 E-value=2.6 Score=42.20 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=18.6
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+|+ |++|||||+ ..+.++.++
T Consensus 25 g~~i~I~----G~tGSGKTT---ll~aL~~~i 49 (186)
T cd01130 25 RKNILIS----GGTGSGKTT---LLNALLAFI 49 (186)
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHhhc
Confidence 4678888 999999999 555544444
No 98
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=64.58 E-value=2.4 Score=42.73 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=17.0
Q ss_pred CeEEEeecCcccccccccccccccccchhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
..-|||| |+||+|||+ -.|.++.
T Consensus 4 G~l~vls----gPSG~GKsT---l~k~L~~ 26 (191)
T COG0194 4 GLLIVLS----GPSGVGKST---LVKALLE 26 (191)
T ss_pred ceEEEEE----CCCCCCHHH---HHHHHHh
Confidence 3568899 999999999 4444443
No 99
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=64.37 E-value=2.5 Score=39.79 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.6
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|+ |++|||||+ .++.+...+
T Consensus 2 I~i~----G~~GsGKst---~a~~la~~~ 23 (147)
T cd02020 2 IAID----GPAGSGKST---VAKLLAKKL 23 (147)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 6778 999999999 777666554
No 100
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=63.64 E-value=3 Score=39.78 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=20.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....|+++ |+.|||||+ -+|.+.+.|
T Consensus 20 ~~~~~i~l~----G~lGaGKTt---l~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLK----GDLGAGKTT---LVQGLLQGL 46 (133)
T ss_pred CCCCEEEEE----cCCCCCHHH---HHHHHHHHc
Confidence 345678888 999999999 666666655
No 101
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=63.20 E-value=3.3 Score=46.38 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=21.7
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-++.|++=|- ||||||||+ ....+++-+
T Consensus 310 L~~gqTlGlV----GESGSGKsT---lG~allrL~ 337 (534)
T COG4172 310 LRRGQTLGLV----GESGSGKST---LGLALLRLI 337 (534)
T ss_pred ecCCCeEEEE----ecCCCCcch---HHHHHHhhc
Confidence 3678999777 999999999 655555554
No 102
>KOG4427|consensus
Probab=62.46 E-value=22 Score=42.56 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 678 MYAQKM-WAIVKIQAHVRRMIAQRHYQKLQ 706 (750)
Q Consensus 678 ~y~~~r-~Aai~IQs~~R~~~aRr~y~~lk 706 (750)
.|.++| .||+.||++||+|++|++|..-.
T Consensus 24 ~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I 53 (1096)
T KOG4427|consen 24 SYQRRREAAALFIQRVLRSYLVRKKAQIEI 53 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 69999999999999999987653
No 103
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=62.02 E-value=5 Score=41.56 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=20.4
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+...-|.|+ |.||||||+ -++.+...+
T Consensus 30 ~~~~~iigi~----G~~GsGKTT---l~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIA----GPPGAGKST---LAEFLEALL 57 (229)
T ss_pred CCCCEEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3556667777 999999999 555555555
No 104
>PRK07261 topology modulation protein; Provisional
Probab=61.99 E-value=3.1 Score=41.21 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=14.9
Q ss_pred EEEeecCcccccccccccccccccchh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLST 84 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l 84 (750)
-|+|. |.||||||+ -++.+.
T Consensus 2 ri~i~----G~~GsGKST---la~~l~ 21 (171)
T PRK07261 2 KIAII----GYSGSGKST---LARKLS 21 (171)
T ss_pred EEEEE----cCCCCCHHH---HHHHHH
Confidence 36777 999999999 554443
No 105
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=61.88 E-value=3.3 Score=40.87 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=17.2
Q ss_pred CeEEEeecCcccccccccccccccccchhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
.+-|+++ |.||||||+ -++.+.+
T Consensus 2 ~~~i~l~----G~~gsGKst---~a~~l~~ 24 (175)
T cd00227 2 GRIIILN----GGSSAGKSS---IARALQS 24 (175)
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHH
Confidence 3568888 999999999 5554443
No 106
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=61.83 E-value=3.8 Score=33.81 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=11.8
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
..+|+ |++|||||+
T Consensus 25 ~tli~----G~nGsGKST 38 (62)
T PF13555_consen 25 VTLIT----GPNGSGKST 38 (62)
T ss_pred EEEEE----CCCCCCHHH
Confidence 35666 999999998
No 107
>PRK08118 topology modulation protein; Reviewed
Probab=61.63 E-value=3.2 Score=40.98 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=18.6
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+-|+|. |.+|||||+ -++.+-+.+
T Consensus 2 ~rI~I~----G~~GsGKST---lak~L~~~l 25 (167)
T PRK08118 2 KKIILI----GSGGSGKST---LARQLGEKL 25 (167)
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 347888 999999999 666666554
No 108
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=61.56 E-value=2.9 Score=39.87 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=16.3
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.||||||+ -++.+++.+
T Consensus 2 i~i~----GpsGsGKst---l~~~L~~~~ 23 (137)
T cd00071 2 IVLS----GPSGVGKST---LLKRLLEEF 23 (137)
T ss_pred EEEE----CCCCCCHHH---HHHHHHhcC
Confidence 5666 999999999 555555544
No 109
>PTZ00301 uridine kinase; Provisional
Probab=61.47 E-value=2.9 Score=43.01 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=15.5
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|-|+ |.||||||+ -++.+.+.+
T Consensus 6 IgIa----G~SgSGKTT---la~~l~~~l 27 (210)
T PTZ00301 6 IGIS----GASGSGKSS---LSTNIVSEL 27 (210)
T ss_pred EEEE----CCCcCCHHH---HHHHHHHHH
Confidence 4567 999999999 655444433
No 110
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=61.20 E-value=3.2 Score=40.88 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=17.6
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+-|+|. |.||||||+ -++.+.+.+
T Consensus 2 ~ii~l~----G~~GsGKsT---l~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVIS----GPSGVGKST---LVKALLEED 25 (180)
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHccC
Confidence 346777 999999999 665555544
No 111
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=60.80 E-value=4.6 Score=44.58 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.5
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....+.+++|+ |++|+|||. .++.+++.+
T Consensus 36 ~~~~~~~i~I~----G~~GtGKT~---l~~~~~~~l 64 (365)
T TIGR02928 36 RGSRPSNVFIY----GKTGTGKTA---VTKYVMKEL 64 (365)
T ss_pred cCCCCCcEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 35677899999 999999999 888777776
No 112
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=60.61 E-value=3.1 Score=41.51 Aligned_cols=22 Identities=14% Similarity=0.062 Sum_probs=18.4
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.|+ |.||||||+ -++.+...+
T Consensus 2 i~i~----G~sgsGKtt---la~~l~~~l 23 (179)
T cd02028 2 VGIA----GPSGSGKTT---FAKKLSNQL 23 (179)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 5677 999999999 777777776
No 113
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=60.45 E-value=3.4 Score=44.90 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=20.3
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+|+ |++|||||+ ..+.++.++
T Consensus 132 ~~~ilI~----G~tGSGKTT---ll~al~~~i 156 (299)
T TIGR02782 132 RKNILVV----GGTGSGKTT---LANALLAEI 156 (299)
T ss_pred CCeEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3579999 999999999 666666665
No 114
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=60.39 E-value=7.1 Score=48.12 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=68.3
Q ss_pred hhhcCCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHh
Q psy14295 50 MKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAF 129 (750)
Q Consensus 50 ~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaF 129 (750)
|..-..+|.+||+ ||+|||||+ - +=+|| ....-.....+-|..|.. -..+..|.-|-|-+
T Consensus 59 ~~ai~~~~vvii~----getGsGKTT---q---lP~~l-------le~g~~~~g~I~~tQPRR---lAArsvA~RvAeel 118 (845)
T COG1643 59 LKAIEQNQVVIIV----GETGSGKTT---Q---LPQFL-------LEEGLGIAGKIGCTQPRR---LAARSVAERVAEEL 118 (845)
T ss_pred HHHHHhCCEEEEe----CCCCCChHH---H---HHHHH-------HhhhcccCCeEEecCchH---HHHHHHHHHHHHHh
Confidence 4445678999999 999999998 2 33343 111101122355655543 23345566777888
Q ss_pred cCcccCCCC----CCCCccceEEEEEecCCceeeeeeeeeeccccee-eecCCCCCcchhhhhh
Q psy14295 130 GNAKTIRND----NSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRI-VSQSKDERNYHVFYCI 188 (750)
Q Consensus 130 GNAkT~~N~----NSSRfgk~~~l~f~~~g~l~ga~i~~yLLEksRV-v~~~~~ErnfHIFYqL 188 (750)
|.---..-. --|+-+.=+.+.|=++|.+.---...++|.+-.+ +-....||+-++=-.|
T Consensus 119 ~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilL 182 (845)
T COG1643 119 GEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILL 182 (845)
T ss_pred CCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHH
Confidence 763211111 1122244456666667766555555677776555 4556789999886554
No 115
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=59.79 E-value=2.7 Score=40.73 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=16.2
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|++. |.+|||||+ -++.+.+.+
T Consensus 1 i~l~----G~~GsGKST---la~~l~~~l 22 (163)
T TIGR01313 1 FVLM----GVAGSGKST---IASALAHRL 22 (163)
T ss_pred CEEE----CCCCCCHHH---HHHHHHHhc
Confidence 4555 999999999 666555554
No 116
>PF12846 AAA_10: AAA-like domain
Probab=59.51 E-value=3.6 Score=43.48 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=18.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..++|. |.||||||. ..+.++..+
T Consensus 2 ~h~~i~----G~tGsGKT~---~~~~l~~~~ 25 (304)
T PF12846_consen 2 PHTLIL----GKTGSGKTT---LLKNLLEQL 25 (304)
T ss_pred CeEEEE----CCCCCcHHH---HHHHHHHHH
Confidence 456677 999999999 777666655
No 117
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=59.50 E-value=3.3 Score=43.87 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=21.3
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|+|+ |+.|||||+ ..+.++.++
T Consensus 126 ~~~~ili~----G~tGSGKTT---~l~all~~i 151 (270)
T PF00437_consen 126 GRGNILIS----GPTGSGKTT---LLNALLEEI 151 (270)
T ss_dssp TTEEEEEE----ESTTSSHHH---HHHHHHHHC
T ss_pred cceEEEEE----CCCccccch---HHHHHhhhc
Confidence 46889999 999999999 766666665
No 118
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=59.42 E-value=3.3 Score=45.78 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.1
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-.|+|+ |++|||||+ ..+.++.++
T Consensus 122 ~g~ili~----G~tGSGKTT---~l~al~~~i 146 (343)
T TIGR01420 122 RGLILVT----GPTGSGKST---TLASMIDYI 146 (343)
T ss_pred CcEEEEE----CCCCCCHHH---HHHHHHHhh
Confidence 4678888 999999999 776666655
No 119
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=59.33 E-value=3.3 Score=42.87 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=14.9
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|.||||||+ .++.+...|
T Consensus 6 G~sGSGKTT---la~~L~~~l 23 (220)
T cd02025 6 GSVAVGKST---TARVLQALL 23 (220)
T ss_pred CCCCCCHHH---HHHHHHHHH
Confidence 999999999 777666665
No 120
>KOG0920|consensus
Probab=59.30 E-value=5.4 Score=49.28 Aligned_cols=113 Identities=20% Similarity=0.288 Sum_probs=58.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhcccCCCcccccccCCCC---CChhhHHHhhchHHHHhc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNE---FKKPMQILEANPILEAFG 130 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~---~~i~~~il~sn~iLEaFG 130 (750)
..+|-+||| ||+|+|||+ .+-+|+ +++.. .+.....+-|..|.. -++.++|.+- .=|.-|
T Consensus 186 ~~~qVvvIs----GeTGcGKTT------QvpQfi--Ld~~~---~~~~~~~IicTQPRRIsAIsvAeRVa~E--R~~~~g 248 (924)
T KOG0920|consen 186 EENQVVVIS----GETGCGKTT------QVPQFI--LDEAI---ESGAACNIICTQPRRISAISVAERVAKE--RGESLG 248 (924)
T ss_pred HhCceEEEe----CCCCCCchh------hhhHHH--HHHHH---hcCCCCeEEecCCchHHHHHHHHHHHHH--hccccC
Confidence 678999999 999999998 466776 33321 111333456666653 2222333221 123333
Q ss_pred CcccC-CCCCCCCccceEEEEEecCCceee-eeeeeeecccceeeecCCCCCcchh
Q psy14295 131 NAKTI-RNDNSSRFGKYIDIHFNSQGVIEG-AKIEQYLLEKSRIVSQSKDERNYHV 184 (750)
Q Consensus 131 NAkT~-~N~NSSRfgk~~~l~f~~~g~l~g-a~i~~yLLEksRVv~~~~~ErnfHI 184 (750)
...-- ---.|.|.-. +.|.|-.+|.+-- ..-...|..-+-|+-..-.||.-.-
T Consensus 249 ~~VGYqvrl~~~~s~~-t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~ 303 (924)
T KOG0920|consen 249 EEVGYQVRLESKRSRE-TRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINT 303 (924)
T ss_pred CeeeEEEeeecccCCc-eeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCc
Confidence 11110 1112333333 7888887774210 0014555666666666666666543
No 121
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=59.14 E-value=3.6 Score=44.23 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=13.6
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
+-|||+ |-||||||+
T Consensus 2 ~~vIiT----GlSGaGKs~ 16 (284)
T PF03668_consen 2 ELVIIT----GLSGAGKST 16 (284)
T ss_pred eEEEEe----CCCcCCHHH
Confidence 468999 999999999
No 122
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=58.59 E-value=4.9 Score=37.48 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.6
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.+.|. |++|||||+
T Consensus 10 ~g~~~~i~----G~nGsGKSt 26 (137)
T PF00005_consen 10 PGEIVAIV----GPNGSGKST 26 (137)
T ss_dssp TTSEEEEE----ESTTSSHHH
T ss_pred CCCEEEEE----ccCCCcccc
Confidence 45777888 999999999
No 123
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=58.50 E-value=3.6 Score=45.92 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.4
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..--|+|+ |++|||||+ +.+.+++++
T Consensus 133 ~~glilI~----GpTGSGKTT---tL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFIT----GATGSGKST---LLAAIIREL 158 (358)
T ss_pred cCCEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 35678888 999999999 777777776
No 124
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=58.43 E-value=3.8 Score=40.75 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=18.3
Q ss_pred Ccccccccccccccccccchhhhh
Q psy14295 64 LFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 64 ~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+|.|+||.|||+ .++.+-++|
T Consensus 7 ll~GpsGvGKT~---la~~la~~l 27 (171)
T PF07724_consen 7 LLAGPSGVGKTE---LAKALAELL 27 (171)
T ss_dssp EEESSTTSSHHH---HHHHHHHHH
T ss_pred EEECCCCCCHHH---HHHHHHHHh
Confidence 355999999999 998888888
No 125
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=58.24 E-value=4 Score=47.59 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=20.9
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-+..=|- ||||||||. .+..+|.++
T Consensus 34 ~GE~lgIv----GESGsGKSt---~a~~i~gll 59 (539)
T COG1123 34 PGEILGIV----GESGSGKST---LALALMGLL 59 (539)
T ss_pred CCcEEEEE----cCCCCCHHH---HHHHHhccC
Confidence 34555555 999999999 888888888
No 126
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=58.09 E-value=5.8 Score=45.09 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=39.1
Q ss_pred CCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcC-----------CCeEEEeecCcccccccccccccccccchhhh
Q psy14295 18 IYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFG-----------QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 18 ~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~-----------~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
+.+|+.+..+-+...-...+-+=.++..+|.++.+-. .+..|++. |++|+|||. .++.+-+.
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~----Gp~GtGKT~---lAr~lA~~ 131 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLI----GPTGSGKTL---LAQTLARI 131 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEE----cCCCCCHHH---HHHHHHHH
Confidence 5677777777665433333334455555666555432 23678888 999999999 66555443
Q ss_pred h
Q psy14295 87 K 87 (750)
Q Consensus 87 l 87 (750)
+
T Consensus 132 l 132 (412)
T PRK05342 132 L 132 (412)
T ss_pred h
Confidence 3
No 127
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=57.88 E-value=5.6 Score=39.27 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=23.0
Q ss_pred HHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 45 NGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 45 ~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....+...-.++.+++. |.||+|||. +++.|
T Consensus 24 ~g~~~l~~~l~~k~~vl~----G~SGvGKSS-------LiN~L 55 (161)
T PF03193_consen 24 EGIEELKELLKGKTSVLL----GQSGVGKSS-------LINAL 55 (161)
T ss_dssp TTHHHHHHHHTTSEEEEE----CSTTSSHHH-------HHHHH
T ss_pred cCHHHHHHHhcCCEEEEE----CCCCCCHHH-------HHHHH
Confidence 334455554456888888 999999999 66666
No 128
>PRK00889 adenylylsulfate kinase; Provisional
Probab=57.56 E-value=4.8 Score=39.61 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=20.4
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|++. |.+|||||+ .++.+...+
T Consensus 3 ~g~~i~~~----G~~GsGKST---~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFT----GLSGAGKTT---IARALAEKL 28 (175)
T ss_pred CCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34577888 999999999 777666666
No 129
>PRK14738 gmk guanylate kinase; Provisional
Probab=57.53 E-value=4.5 Score=41.28 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
....-|||+ |.||||||+
T Consensus 11 ~~~~~ivi~----GpsG~GK~t 28 (206)
T PRK14738 11 AKPLLVVIS----GPSGVGKDA 28 (206)
T ss_pred CCCeEEEEE----CcCCCCHHH
Confidence 356778888 999999999
No 130
>PF05729 NACHT: NACHT domain
Probab=57.48 E-value=4.1 Score=38.82 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=17.6
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-++|+ |+.|+|||. -++.+...+
T Consensus 2 ~l~I~----G~~G~GKSt---ll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWIS----GEPGSGKST---LLRKLAQQL 24 (166)
T ss_pred EEEEE----CCCCCChHH---HHHHHHHHH
Confidence 36788 999999999 666555555
No 131
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=57.45 E-value=4.4 Score=42.52 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=18.3
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..+.=|. ||||||||+ -++.++-+.
T Consensus 31 ~~Ge~lgiv----GeSGsGKST---L~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIV----GESGSGKST---LARLLAGLE 57 (252)
T ss_pred cCCCEEEEE----cCCCCCHHH---HHHHHhccc
Confidence 455676666 999999999 544444333
No 132
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=57.17 E-value=3.9 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=20.2
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
--|+|+ |++|||||+ ..+.+++|+
T Consensus 150 GlilI~----G~TGSGKTT---~l~al~~~i 173 (372)
T TIGR02525 150 GLGLIC----GETGSGKST---LAASIYQHC 173 (372)
T ss_pred CEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 468888 999999999 777777777
No 133
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=57.17 E-value=4.5 Score=39.73 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=18.1
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|.++ |.||||||+ -++.+-+.|
T Consensus 4 vIwlt----GlsGsGKtT---lA~~L~~~L 26 (156)
T PF01583_consen 4 VIWLT----GLSGSGKTT---LARALERRL 26 (156)
T ss_dssp EEEEE----SSTTSSHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 46666 999999999 777666666
No 134
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=57.16 E-value=4 Score=42.22 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=20.6
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+++|||. -.|-||||||+ -++.+...|
T Consensus 6 ~~~iiIg--IaG~SgSGKTT---va~~l~~~~ 32 (218)
T COG0572 6 EKVIIIG--IAGGSGSGKTT---VAKELSEQL 32 (218)
T ss_pred CceEEEE--EeCCCCCCHHH---HHHHHHHHh
Confidence 5677663 23999999999 888777777
No 135
>KOG0165|consensus
Probab=57.05 E-value=53 Score=39.62 Aligned_cols=103 Identities=27% Similarity=0.418 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHHHH----HHHHHHHHH---------HHHhhhhhHHHHHHH
Q psy14295 603 GWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRMRVGYMRLQA----LIRSRLLSH---------RFRHLRGHIVGLQAR 669 (750)
Q Consensus 603 g~~~Rr~~~~~r~aai~IQs~~Rg~~~R~~~~~~r~a~~~IQs----~~R~~~~R~---------~~~~~~~aai~IQa~ 669 (750)
....+..|.....++..+|++.+.|..+..|..++.++...|. +.+.+.... .|-..+.....||+.
T Consensus 182 ~~~~~~DfG~q~~a~~tl~Sy~~~WL~~~L~~IF~~~~~~~~khlM~kL~~f~s~~~FS~ptmlk~y~~~~s~~~ii~~~ 261 (1023)
T KOG0165|consen 182 MAVYRRDFGQQKRAAITLQSYFRTWLTRKLFLIFRKAAVVLQKHLMHKLRAFLSAKHFSQPTMLKVYLQIRSSVIIIQAR 261 (1023)
T ss_pred hchhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccchhcCcHHHHHHHHHHHHHHHhcCchHHHHHHHhccCceeeccc
Confidence 3455666666677888888888888888887766554433332 233332222 222223334445555
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14295 670 ARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKL 705 (750)
Q Consensus 670 ~Rg~laRr~y~~~r~Aai~IQs~~R~~~aRr~y~~l 705 (750)
..-.+..........=+++||++|+.+.....|.-.
T Consensus 262 ~kEAL~k~~L~~i~~L~~~I~~A~~~~~~~~~~~I~ 297 (1023)
T KOG0165|consen 262 SKEALQKRKLQEIKNLTIKIQAAWRRYRAKKYLCIV 297 (1023)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 555555555555555666666666666665555443
No 136
>PRK06217 hypothetical protein; Validated
Probab=56.73 E-value=3.9 Score=40.72 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=16.7
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|+ |-||||||+ -++.+-+.+
T Consensus 4 I~i~----G~~GsGKST---la~~L~~~l 25 (183)
T PRK06217 4 IHIT----GASGSGTTT---LGAALAERL 25 (183)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHc
Confidence 8888 999999999 555544443
No 137
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=56.29 E-value=5.5 Score=41.22 Aligned_cols=18 Identities=11% Similarity=0.339 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
+..+.+.|. |+||||||+
T Consensus 19 ~~Ge~~~l~----G~sGsGKST 36 (226)
T cd03270 19 PRNKLVVIT----GVSGSGKSS 36 (226)
T ss_pred CCCcEEEEE----cCCCCCHHH
Confidence 566788888 999999999
No 138
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=56.26 E-value=4.1 Score=45.21 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=19.8
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|+|+ |.+|||||+ ..+.++.++
T Consensus 161 ~~~nilI~----G~tGSGKTT---ll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLC----GPTGSGKTT---MSKTLISAI 186 (344)
T ss_pred cCCeEEEE----CCCCccHHH---HHHHHHccc
Confidence 34679999 999999999 555555544
No 139
>PF13245 AAA_19: Part of AAA domain
Probab=56.02 E-value=6.1 Score=33.81 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=19.5
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+...+|. |..|+|||. .....+.++
T Consensus 9 ~~~~~vv~----g~pGtGKT~---~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQ----GPPGTGKTT---TLAARIAEL 34 (76)
T ss_pred hCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 45566778 999999997 666666666
No 140
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=55.39 E-value=4.2 Score=41.11 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=17.1
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.|+ |-||||||+ -++.+.+.+
T Consensus 2 i~i~----G~sgsGKTt---la~~l~~~~ 23 (187)
T cd02024 2 VGIS----GVTNSGKTT---LAKLLQRIL 23 (187)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHc
Confidence 6677 999999999 666665554
No 141
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=55.30 E-value=4.8 Score=39.77 Aligned_cols=22 Identities=18% Similarity=0.139 Sum_probs=19.4
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.|| |.+|||||+ -++.+-.++
T Consensus 3 ItIs----G~pGsG~TT---va~~lAe~~ 24 (179)
T COG1102 3 ITIS----GLPGSGKTT---VARELAEHL 24 (179)
T ss_pred EEec----cCCCCChhH---HHHHHHHHh
Confidence 7789 999999999 888887777
No 142
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=55.20 E-value=6.7 Score=40.61 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.4
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
.-.-++|- |.||||||+
T Consensus 27 ~Gevv~ii----GpSGSGKST 43 (240)
T COG1126 27 KGEVVVII----GPSGSGKST 43 (240)
T ss_pred CCCEEEEE----CCCCCCHHH
Confidence 34556666 999999999
No 143
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=55.10 E-value=4.8 Score=47.07 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=21.3
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.+.++.+.
T Consensus 359 ~~G~~vaIv----G~SGsGKST---Ll~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAIL----GPSGSGKST---LLMLLTGLL 385 (529)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhcCC
Confidence 577888888 999999999 665555554
No 144
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=54.57 E-value=5.3 Score=41.62 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=13.5
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
+.-.+.|. |+||||||+
T Consensus 30 ~Ge~vaI~----GpSGSGKST 46 (226)
T COG1136 30 AGEFVAIV----GPSGSGKST 46 (226)
T ss_pred CCCEEEEE----CCCCCCHHH
Confidence 34456667 999999999
No 145
>PRK08084 DNA replication initiation factor; Provisional
Probab=54.51 E-value=9.7 Score=39.69 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=19.9
Q ss_pred HHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 45 NGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 45 ~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.+.+++.......+++|. |++|+|||.
T Consensus 34 ~~l~~~~~~~~~~~l~l~----Gp~G~GKTh 60 (235)
T PRK08084 34 AALQNALRQEHSGYIYLW----SREGAGRSH 60 (235)
T ss_pred HHHHHHHhCCCCCeEEEE----CCCCCCHHH
Confidence 344445445556788888 999999998
No 146
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=54.38 E-value=4.1 Score=38.20 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=15.4
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|++. |.+|||||+ -++.+.+.+
T Consensus 2 ii~~----G~pgsGKSt---~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILC----GPPGSGKST---LAKRLAKRL 23 (143)
T ss_dssp EEEE----ESTTSSHHH---HHHHHHHHS
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHC
Confidence 5566 999999999 555544333
No 147
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=54.28 E-value=4.5 Score=44.63 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=18.7
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+|+ |++|||||+ ..+.++.++
T Consensus 160 ~~nili~----G~tgSGKTT---ll~aL~~~i 184 (332)
T PRK13900 160 KKNIIIS----GGTSTGKTT---FTNAALREI 184 (332)
T ss_pred CCcEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 3569999 999999999 555444444
No 148
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=54.21 E-value=4.6 Score=38.94 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=16.7
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.+|||||+ -++.+..++
T Consensus 2 i~i~----G~~GsGKST---la~~L~~~l 23 (149)
T cd02027 2 IWLT----GLSGSGKST---IARALEEKL 23 (149)
T ss_pred EEEE----cCCCCCHHH---HHHHHHHHH
Confidence 4566 999999999 666665555
No 149
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=54.15 E-value=8 Score=42.00 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=21.7
Q ss_pred hhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 51 KRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 51 ~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+....+++. |++|+|||. .++.+.+.+
T Consensus 31 ~~~~~~~~lll~----Gp~GtGKT~---la~~~~~~l 60 (337)
T PRK12402 31 VDSPNLPHLLVQ----GPPGSGKTA---AVRALAREL 60 (337)
T ss_pred HhCCCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 334443468888 999999999 776666665
No 150
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=54.12 E-value=14 Score=42.52 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=44.0
Q ss_pred HHHHhhh-----cCCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHH
Q psy14295 46 GYTHMKR-----FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQIL 120 (750)
Q Consensus 46 ay~~~~~-----~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il 120 (750)
|+++++. .+-|=.|+|. ||||.||.- -++. ++++ ..-+...-..+.| ..+++-++
T Consensus 231 am~~ll~~i~~VA~Sd~tVLi~----GETGtGKEl---vAra-IH~~-------S~R~~kPfV~~NC-----AAlPesLl 290 (550)
T COG3604 231 AMRQLLKEIEVVAKSDSTVLIR----GETGTGKEL---VARA-IHQL-------SPRRDKPFVKLNC-----AALPESLL 290 (550)
T ss_pred HHHHHHHHHHHHhcCCCeEEEe----cCCCccHHH---HHHH-HHhh-------CcccCCCceeeec-----cccchHHH
Confidence 4555544 3556678888 999999987 5543 3333 1111111122333 34666566
Q ss_pred hhchHHHHhcCcccCCCC-CCCCccce
Q psy14295 121 EANPILEAFGNAKTIRND-NSSRFGKY 146 (750)
Q Consensus 121 ~sn~iLEaFGNAkT~~N~-NSSRfgk~ 146 (750)
+| |-||+-|-.-.. -++|-|||
T Consensus 291 ES----ELFGHeKGAFTGA~~~r~GrF 313 (550)
T COG3604 291 ES----ELFGHEKGAFTGAINTRRGRF 313 (550)
T ss_pred HH----HHhcccccccccchhccCcce
Confidence 66 678888766332 35677776
No 151
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=53.92 E-value=7.1 Score=43.63 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=24.1
Q ss_pred hhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 51 KRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 51 ~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....+.+++|+ |++|+|||. ..+.+++.+
T Consensus 50 ~~~~~~~~~lI~----G~~GtGKT~---l~~~v~~~l 79 (394)
T PRK00411 50 LRGSRPLNVLIY----GPPGTGKTT---TVKKVFEEL 79 (394)
T ss_pred hCCCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 334567889999 999999999 777777666
No 152
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=53.82 E-value=5.4 Score=39.48 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=18.2
Q ss_pred CeEEEeecCcccccccccccccccccchhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
++.|++. |.+|||||+ -++.+...
T Consensus 4 ~~~I~li----G~~GaGKSt---l~~~La~~ 27 (172)
T PRK05057 4 KRNIFLV----GPMGAGKST---IGRQLAQQ 27 (172)
T ss_pred CCEEEEE----CCCCcCHHH---HHHHHHHH
Confidence 5678888 999999999 55554443
No 153
>PRK03846 adenylylsulfate kinase; Provisional
Probab=53.33 E-value=6.1 Score=39.91 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=20.9
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+...|.+. |.||||||+ -++.+...|
T Consensus 22 ~~~~~i~i~----G~~GsGKST---la~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFT----GLSGSGKST---VAGALEEAL 48 (198)
T ss_pred CCCEEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 456778888 999999999 666666655
No 154
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=53.33 E-value=4.2 Score=36.88 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.1
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.|. |++|.|||. .++.+.+.+
T Consensus 1 I~i~----G~~G~GKS~---l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIY----GPPGIGKST---LAKELAKDL 22 (107)
T ss_pred CEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3556 999999999 777666666
No 155
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=53.11 E-value=4.1 Score=47.48 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.3
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
||||||||+ .++.++..+
T Consensus 324 GeSGsGKST---lar~i~gL~ 341 (539)
T COG1123 324 GESGSGKST---LARILAGLL 341 (539)
T ss_pred CCCCCCHHH---HHHHHhCCC
Confidence 999999999 777776666
No 156
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=52.88 E-value=5.8 Score=44.55 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.7
Q ss_pred CCCCCCcchhhhHHHHHHHHh
Q psy14295 354 GESGAGKTESTKLILQYLAAI 374 (750)
Q Consensus 354 ~~sgag~~~~~~~~~~~~~~~ 374 (750)
+|||+|||-.+.++++-+..-
T Consensus 320 GESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 320 GESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCCcchHHHHHHhhcCcC
Confidence 799999999999999888764
No 157
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=52.87 E-value=5.2 Score=39.44 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=17.0
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|. |.+|||||+ -++.+.+.+
T Consensus 5 ii~i~----G~~GsGKsT---l~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIV----GGPGSGKGT---QCEKIVEKY 27 (188)
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 45666 999999999 666665544
No 158
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=52.86 E-value=5.6 Score=43.74 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|- |+||||||+
T Consensus 31 ~~Ge~~~iv----G~sGsGKST 48 (330)
T PRK15093 31 TEGEIRGLV----GESGSGKSL 48 (330)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 566788777 999999999
No 159
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=52.46 E-value=5 Score=38.15 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.0
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+|++. |.+|||||+ -++.+-..+
T Consensus 1 ~i~l~----G~~GsGKst---la~~la~~l 23 (154)
T cd00464 1 NIVLI----GMMGAGKTT---VGRLLAKAL 23 (154)
T ss_pred CEEEE----cCCCCCHHH---HHHHHHHHh
Confidence 36777 999999999 777666555
No 160
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.33 E-value=11 Score=42.13 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=34.5
Q ss_pred HHHhhcCCCCCCC--CcchhhhHHHHHHhhh-cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 24 IKLYKDKKIGELP--PHIFAIGDNGYTHMKR-FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 24 ~~~y~~~~~~~~~--PHi~~~a~~ay~~~~~-~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.++|+=....++- +|+-. ...++.. .+-+++++++ |+.|+|||+ .++.+.+.+
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~----~l~~~~~~~~~~h~~L~~----Gp~G~GKTt---la~~la~~l 62 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVT----AISNGLSLGRIHHAWLLS----GTRGVGKTT---IARLLAKSL 62 (363)
T ss_pred HHHhCCCchhhccChHHHHH----HHHHHHHcCCCCeEEEEe----cCCCCCHHH---HHHHHHHHh
Confidence 4556544444433 44433 2344444 4568899898 999999999 887777766
No 161
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=52.32 E-value=5.4 Score=39.94 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=16.8
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.||||||+ =++.+.+.+
T Consensus 3 iiil----G~pGaGK~T---~A~~La~~~ 24 (178)
T COG0563 3 ILIL----GPPGAGKST---LAKKLAKKL 24 (178)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 5566 999999999 666666554
No 162
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=52.03 E-value=5.8 Score=43.61 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=18.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
...+.+.|. ||||||||+ -.+.++.
T Consensus 39 ~~Ge~~~Iv----G~sGsGKST---Ll~~l~g 63 (327)
T PRK11308 39 ERGKTLAVV----GESGCGKST---LARLLTM 63 (327)
T ss_pred CCCCEEEEE----CCCCCcHHH---HHHHHHc
Confidence 456788887 999999999 4444433
No 163
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=52.00 E-value=8.1 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.0
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|+ |++|||||+ +...++.++
T Consensus 244 lilit----GptGSGKTT---tL~a~L~~l 266 (486)
T TIGR02533 244 IILVT----GPTGSGKTT---TLYAALSRL 266 (486)
T ss_pred EEEEE----cCCCCCHHH---HHHHHHhcc
Confidence 56788 999999999 766555555
No 164
>PRK04182 cytidylate kinase; Provisional
Probab=51.97 E-value=5.2 Score=39.05 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=17.3
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|+ |.+|||||+ -++.+.+.|
T Consensus 2 ~I~i~----G~~GsGKst---ia~~la~~l 24 (180)
T PRK04182 2 IITIS----GPPGSGKTT---VARLLAEKL 24 (180)
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 47788 999999999 666554443
No 165
>PRK13764 ATPase; Provisional
Probab=51.59 E-value=7.5 Score=46.23 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=20.5
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+|+ |.+|||||+ ....++.++
T Consensus 257 ~~~ILIs----G~TGSGKTT---ll~AL~~~i 281 (602)
T PRK13764 257 AEGILIA----GAPGAGKST---FAQALAEFY 281 (602)
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4569999 999999999 777677666
No 166
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=51.52 E-value=8.8 Score=36.35 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-+...|+| |-|.||.|||. .++++.+.|
T Consensus 49 ~p~KpLVlS--fHG~tGtGKn~---v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLS--FHGWTGTGKNF---VSRLIAEHL 77 (127)
T ss_pred CCCCCEEEE--eecCCCCcHHH---HHHHHHHHH
Confidence 445668888 99999999999 888888886
No 167
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=51.45 E-value=5.2 Score=42.32 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=12.8
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
-|||| |-||||||.
T Consensus 3 lvIVT----GlSGAGKsv 16 (286)
T COG1660 3 LVIVT----GLSGAGKSV 16 (286)
T ss_pred EEEEe----cCCCCcHHH
Confidence 47899 999999999
No 168
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=51.34 E-value=5.7 Score=43.73 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|- ||||||||+
T Consensus 40 ~~Ge~~~iv----G~sGsGKST 57 (330)
T PRK09473 40 RAGETLGIV----GESGSGKSQ 57 (330)
T ss_pred cCCCEEEEE----CCCCchHHH
Confidence 456778777 999999999
No 169
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=51.27 E-value=9.2 Score=47.20 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=22.7
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.++.|+ |.+|.|||. +++.+++-|
T Consensus 778 sgpnnvLYIy----G~PGTGKTA---TVK~VLrEL 805 (1164)
T PTZ00112 778 SGSNQILYIS----GMPGTGKTA---TVYSVIQLL 805 (1164)
T ss_pred CCCCceEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3444566799 999999999 888888877
No 170
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=51.26 E-value=5.3 Score=39.61 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=16.5
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|+ |++|+|||+ ..+.+++++
T Consensus 2 i~iT----G~pG~GKTT---ll~k~i~~l 23 (168)
T PF03266_consen 2 IFIT----GPPGVGKTT---LLKKVIEEL 23 (168)
T ss_dssp EEEE----S-TTSSHHH---HHHHHHHHH
T ss_pred EEEE----CcCCCCHHH---HHHHHHHHh
Confidence 7888 999999999 666555555
No 171
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=51.19 E-value=5.6 Score=37.56 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=16.2
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++|. |++|+|||+ -+..++..+
T Consensus 2 ~~i~----G~~G~GKT~---l~~~i~~~~ 23 (165)
T cd01120 2 ILVF----GPTGSGKTT---LALQLALNI 23 (165)
T ss_pred eeEe----CCCCCCHHH---HHHHHHHHH
Confidence 4566 999999999 665555554
No 172
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=50.50 E-value=6.6 Score=39.12 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=17.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..|++. |.||||||+ -.+.+...+
T Consensus 4 e~i~l~----G~sGsGKST---l~~~la~~l 27 (176)
T PRK09825 4 ESYILM----GVSGSGKSL---IGSKIAALF 27 (176)
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 457777 999999999 555555443
No 173
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=50.49 E-value=5.6 Score=37.88 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=15.3
Q ss_pred EEeecCcccccccccccccccccchhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
|+++ |.+|||||+ -++.+.+-
T Consensus 2 i~l~----G~~GsGKST---~a~~l~~~ 22 (150)
T cd02021 2 IVVM----GVSGSGKST---VGKALAER 22 (150)
T ss_pred EEEE----cCCCCCHHH---HHHHHHhh
Confidence 4566 999999999 66554443
No 174
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=50.31 E-value=8 Score=38.66 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
+..-|+++. |.||||||+
T Consensus 35 ~aGECvvL~----G~SG~GKSt 52 (235)
T COG4778 35 NAGECVVLH----GPSGSGKST 52 (235)
T ss_pred cCccEEEee----CCCCCcHHH
Confidence 445799999 999999998
No 175
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=50.11 E-value=6.2 Score=39.29 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=16.6
Q ss_pred CeEEEeecCcccccccccccccccccchh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLST 84 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l 84 (750)
...|+|. |+||+|||+ .+-.++
T Consensus 18 G~GVLi~----G~SG~GKS~---lAl~Li 39 (171)
T PF07475_consen 18 GVGVLIT----GPSGIGKSE---LALELI 39 (171)
T ss_dssp TEEEEEE----ESTTSSHHH---HHHHHH
T ss_pred CEEEEEE----CCCCCCHHH---HHHHHH
Confidence 4578888 999999999 554333
No 176
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=50.07 E-value=6.4 Score=43.24 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=19.1
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+-|- ||||||||+ -.+.++..+
T Consensus 31 ~~Ge~~~lv----G~sGsGKST---L~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIV----GESGSGKSV---SSLAIMGLI 57 (326)
T ss_pred CCCCEEEEE----CCCCChHHH---HHHHHHcCC
Confidence 456677777 999999999 555544433
No 177
>PRK14527 adenylate kinase; Provisional
Probab=49.81 E-value=7 Score=39.14 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=19.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.+.|++. |.+|||||+ -++.+.+.+
T Consensus 5 ~~~~i~i~----G~pGsGKsT---~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFL----GPPGAGKGT---QAERLAQEL 30 (191)
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 45778888 999999999 665554444
No 178
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=49.40 E-value=6.7 Score=43.23 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=19.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
...+.+.|. ||||||||+ -.+.++..
T Consensus 45 ~~Ge~~~lv----G~sGsGKST---Llk~i~Gl 70 (331)
T PRK15079 45 YEGETLGVV----GESGCGKST---FARAIIGL 70 (331)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHHCC
Confidence 567788787 999999999 54444433
No 179
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=48.95 E-value=9.7 Score=41.23 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=18.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.+.-|-|. |.+|||||+ .++.+...+
T Consensus 60 ~~p~IIGIa----G~~GSGKST---lar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIA----GSVAVGKST---TARILQALL 86 (290)
T ss_pred CCCEEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 344555567 999999999 665554444
No 180
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=48.72 E-value=12 Score=36.02 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=16.8
Q ss_pred HHhhhcCCCeEEEeecCccccccccccc
Q psy14295 48 THMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 48 ~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+.+.+..+.-.|+|. |.+|+|||+
T Consensus 6 ~~~~~~~~~~~v~i~----G~~g~GKSt 29 (173)
T cd04155 6 RKLRKSSEEPRILIL----GLDNAGKTT 29 (173)
T ss_pred HHhhccCCccEEEEE----ccCCCCHHH
Confidence 334444444557777 999999999
No 181
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=48.36 E-value=6.2 Score=39.40 Aligned_cols=18 Identities=17% Similarity=-0.075 Sum_probs=14.3
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|.||||||+ -.+.++..|
T Consensus 13 G~sgsGKTT---Li~~li~~l 30 (173)
T PRK10751 13 AWSGTGKTT---LLKKLIPAL 30 (173)
T ss_pred CCCCChHHH---HHHHHHHHH
Confidence 999999999 666666655
No 182
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=48.29 E-value=6.9 Score=42.59 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.1
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
....|+|+ |.+|||||+
T Consensus 143 ~~~~ili~----G~tGsGKTT 159 (308)
T TIGR02788 143 SRKNIIIS----GGTGSGKTT 159 (308)
T ss_pred CCCEEEEE----CCCCCCHHH
Confidence 34689999 999999999
No 183
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=48.27 E-value=7.3 Score=39.55 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~G~~~~l~----G~nGsGKST 43 (214)
T TIGR02673 26 RKGEFLFLT----GPSGAGKTT 43 (214)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 184
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=48.06 E-value=4.7 Score=44.74 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=9.8
Q ss_pred ccccccccccc
Q psy14295 65 FLDEIGMGSET 75 (750)
Q Consensus 65 f~gESGaGKT~ 75 (750)
++|.||||||+
T Consensus 36 lLGPSGcGKTT 46 (352)
T COG3842 36 LLGPSGCGKTT 46 (352)
T ss_pred EECCCCCCHHH
Confidence 35999999999
No 185
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=48.03 E-value=13 Score=35.61 Aligned_cols=24 Identities=8% Similarity=0.242 Sum_probs=17.4
Q ss_pred HHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 45 NGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 45 ~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+++..+. .++.++|. |.+|+|||.
T Consensus 6 ~~~~~i~---~~~~~li~----aptGsGKT~ 29 (169)
T PF00270_consen 6 EAIEAII---SGKNVLIS----APTGSGKTL 29 (169)
T ss_dssp HHHHHHH---TTSEEEEE----CSTTSSHHH
T ss_pred HHHHHHH---cCCCEEEE----CCCCCccHH
Confidence 4555555 23557788 999999999
No 186
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=47.92 E-value=7.7 Score=39.73 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 11 ~~Ge~~~l~----G~NGsGKST 28 (213)
T PRK15177 11 GYHEHIGIL----AAPGSGKTT 28 (213)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 187
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=47.77 E-value=12 Score=38.50 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=18.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
..+..+++. |++|+|||. -++.+.+
T Consensus 40 ~~~~~~~l~----G~~G~GKT~---La~ai~~ 64 (227)
T PRK08903 40 VADRFFYLW----GEAGSGRSH---LLQALVA 64 (227)
T ss_pred CCCCeEEEE----CCCCCCHHH---HHHHHHH
Confidence 456789998 999999999 4444433
No 188
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=47.70 E-value=9.6 Score=44.85 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=24.0
Q ss_pred hhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 51 KRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 51 ~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....++.++|. ||+|+|||. .++.+.++.
T Consensus 81 l~~~~~~~vLi~----Ge~GtGKt~---lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIY----GPPGVGKTA---AARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 445678999999 999999999 777766554
No 189
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=47.69 E-value=7.7 Score=38.66 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 16 ~~Ge~~~i~----G~nGsGKST 33 (190)
T TIGR01166 16 ERGEVLALL----GANGAGKST 33 (190)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 190
>PLN02318 phosphoribulokinase/uridine kinase
Probab=47.45 E-value=9.8 Score=45.11 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=24.9
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
=|-++-+|-.-+.. +.++.+||. ..|.||||||+ -++.+...+
T Consensus 47 g~~~~ira~qlL~~-~~~~riIIG--IaGpSGSGKTT---LAk~LaglL 89 (656)
T PLN02318 47 GFFVVIRACQLLAQ-KNDGIILVG--VAGPSGAGKTV---FTEKVLNFM 89 (656)
T ss_pred chhhhhHHHHHHHh-cCCCeEEEE--EECCCCCcHHH---HHHHHHhhC
Confidence 34555555443333 434444432 23999999999 666665544
No 191
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.43 E-value=7.4 Score=39.78 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~G~~~~i~----G~nGsGKST 45 (220)
T cd03293 28 EEGEFVALV----GPSGCGKST 45 (220)
T ss_pred eCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 192
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=47.13 E-value=8 Score=41.71 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=13.4
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
..|+|+ |+||+||||
T Consensus 146 vGVLIt----G~SG~GKSE 160 (308)
T COG1493 146 VGVLIT----GPSGAGKSE 160 (308)
T ss_pred eEEEEE----CCCCCCHhH
Confidence 567888 999999999
No 193
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=46.97 E-value=7.9 Score=45.82 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=20.3
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|.+.|. |+||||||+ =.+.++..+
T Consensus 367 ~~G~~~aIv----G~sGsGKST---Ll~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALV----GRSGSGKST---IANLLTRFY 393 (582)
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHHhcc
Confidence 567899998 999999999 444444433
No 194
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=46.96 E-value=8.8 Score=44.84 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=26.2
Q ss_pred hhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 50 MKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 50 ~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+...+..++++++ |+.|.|||+ .++.+.+.+
T Consensus 37 i~~~ri~~a~Lf~----Gp~G~GKTT---~ArilAk~L 67 (507)
T PRK06645 37 ILNDRLAGGYLLT----GIRGVGKTT---SARIIAKAV 67 (507)
T ss_pred HHcCCCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3445668999999 999999999 988888877
No 195
>KOG0056|consensus
Probab=46.96 E-value=8.6 Score=44.13 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|.|-+- |+||+|||+ ..+++++|+
T Consensus 562 ~pGktvAlV----G~SGaGKST---imRlLfRff 588 (790)
T KOG0056|consen 562 QPGKTVALV----GPSGAGKST---IMRLLFRFF 588 (790)
T ss_pred cCCcEEEEE----CCCCCchhH---HHHHHHHHh
Confidence 345777777 999999999 999999998
No 196
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=46.80 E-value=7.2 Score=38.45 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=16.9
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.+|||||+ -++.+.+.+
T Consensus 2 i~i~----G~pGsGKst---~a~~la~~~ 23 (183)
T TIGR01359 2 VFVL----GGPGSGKGT---QCAKIVENF 23 (183)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHc
Confidence 5666 999999999 766666555
No 197
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=46.79 E-value=7.5 Score=42.66 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=19.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|+|+ |.+|||||+ ..+.++.++
T Consensus 147 ~~~~ilI~----G~tGSGKTT---ll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVI----GGTGSGKTT---LVNAIINEM 172 (319)
T ss_pred cCCeEEEE----CCCCCCHHH---HHHHHHHhh
Confidence 34789999 999999999 555555443
No 198
>PRK12377 putative replication protein; Provisional
Probab=46.72 E-value=11 Score=39.96 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=20.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..++++++ |.+|+|||. -+..+.+.+
T Consensus 100 ~~~~l~l~----G~~GtGKTh---La~AIa~~l 125 (248)
T PRK12377 100 GCTNFVFS----GKPGTGKNH---LAAAIGNRL 125 (248)
T ss_pred cCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34789999 999999999 666666655
No 199
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=46.71 E-value=8 Score=39.22 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 25 ~~G~~~~i~----G~nGsGKST 42 (214)
T cd03292 25 SAGEFVFLV----GPSGAGKST 42 (214)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 457788888 999999999
No 200
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=46.62 E-value=12 Score=39.11 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=29.1
Q ss_pred hhHHHHHHhhh-cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 42 IGDNGYTHMKR-FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 42 ~a~~ay~~~~~-~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+-+++|..|.. -..+.+-.+. |++|+|||| +.|.+-+.|
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~----GpagtGKte---tik~La~~l 56 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALS----GPAGTGKTE---TIKDLARAL 56 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEE----SSTTSSHHH---HHHHHHHCT
T ss_pred HHHHHHHHHHHHhccCCCCCCc----CCCCCCchh---HHHHHHHHh
Confidence 46777776654 4567888888 999999999 777665544
No 201
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.60 E-value=7.6 Score=42.07 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..=-|+++ |.+|||||+ +.-.++.|+
T Consensus 124 ~~GLILVT----GpTGSGKST---TlAamId~i 149 (353)
T COG2805 124 PRGLILVT----GPTGSGKST---TLAAMIDYI 149 (353)
T ss_pred CCceEEEe----CCCCCcHHH---HHHHHHHHH
Confidence 34467888 999999999 888888888
No 202
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=46.58 E-value=7.1 Score=46.55 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=25.3
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+..|++|++ |.+|.|||+ .++.+.+.|
T Consensus 42 ~gri~ha~L~~----Gp~GvGKTt---~Ar~lAk~L 70 (598)
T PRK09111 42 TGRIAQAFMLT----GVRGVGKTT---TARILARAL 70 (598)
T ss_pred cCCCCceEEEE----CCCCCCHHH---HHHHHHHhh
Confidence 45678999999 999999999 888888877
No 203
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=46.47 E-value=8.1 Score=47.00 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|.|-|. |+||||||+ =+|+++..+
T Consensus 497 ~~Ge~vaIv----G~SGsGKST---L~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIV----GRSGSGKST---LLKLLLGLY 523 (709)
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHhcCC
Confidence 566889888 999999999 666666655
No 204
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=46.47 E-value=12 Score=42.59 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=17.8
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-.|++. |++|+|||+ .++.+-+.+
T Consensus 117 ~~iLL~----GP~GsGKT~---lAraLA~~l 140 (413)
T TIGR00382 117 SNILLI----GPTGSGKTL---LAQTLARIL 140 (413)
T ss_pred ceEEEE----CCCCcCHHH---HHHHHHHhc
Confidence 467777 999999999 665554433
No 205
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=46.36 E-value=8.3 Score=39.05 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~G~~~~l~----G~nGsGKST 42 (211)
T cd03225 25 KKGEFVLIV----GPNGSGKST 42 (211)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 206
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.25 E-value=6.8 Score=36.75 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=11.5
Q ss_pred EEeecCccccccccccc
Q psy14295 59 IFLKDLFLDEIGMGSET 75 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~ 75 (750)
|++. |++|+|||+
T Consensus 2 vlL~----G~~G~GKt~ 14 (139)
T PF07728_consen 2 VLLV----GPPGTGKTT 14 (139)
T ss_dssp EEEE----ESSSSSHHH
T ss_pred EEEE----CCCCCCHHH
Confidence 5666 999999999
No 207
>KOG0942|consensus
Probab=46.22 E-value=49 Score=40.69 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy14295 631 RRYQRMRVGYMRLQALIRSRLLSHRFRHLR 660 (750)
Q Consensus 631 ~~~~~~r~a~~~IQs~~R~~~~R~~~~~~~ 660 (750)
..-++...+++++|++|||++.|++.+..-
T Consensus 23 ee~rk~e~~av~vQs~~Rg~~~r~~~~~~~ 52 (1001)
T KOG0942|consen 23 EEERKQEKNAVKVQSFWRGFRVRHNQKLLF 52 (1001)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 333344457999999999999987765443
No 208
>PRK04040 adenylate kinase; Provisional
Probab=46.16 E-value=8.4 Score=38.84 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=18.8
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|+ |.+|+|||+ -++.+.+.+
T Consensus 3 ~~i~v~----G~pG~GKtt---~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVT----GVPGVGKTT---VLNKALEKL 26 (188)
T ss_pred eEEEEE----eCCCCCHHH---HHHHHHHHh
Confidence 457888 999999999 666665555
No 209
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=46.01 E-value=8.4 Score=39.22 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 27 ~~Ge~~~i~----G~nGsGKST 44 (216)
T TIGR00960 27 TKGEMVFLV----GHSGAGKST 44 (216)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 210
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=45.80 E-value=15 Score=42.51 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=16.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.|.|. |+||||||+
T Consensus 30 ~~GEiv~L~----G~SGsGKST 47 (504)
T TIGR03238 30 PSSSLLFLC----GSSGDGKSE 47 (504)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567889888 999999999
No 211
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=45.76 E-value=16 Score=33.47 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=16.4
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.-++.||||- |+|-+|||.
T Consensus 87 p~rp~Sivie----G~sRTGKT~ 105 (106)
T PF08283_consen 87 PLRPISIVIE----GDSRTGKTM 105 (106)
T ss_pred CCCCCceeEe----cCCccCcCC
Confidence 3568899999 999999985
No 212
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.64 E-value=8.6 Score=39.65 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 29 ~~Ge~~~l~----G~nGsGKST 46 (233)
T cd03258 29 PKGEIFGII----GRSGAGKST 46 (233)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567888888 999999999
No 213
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.59 E-value=8.6 Score=39.03 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (213)
T cd03259 24 EPGEFLALL----GPSGCGKTT 41 (213)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 214
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=45.28 E-value=14 Score=42.00 Aligned_cols=61 Identities=16% Similarity=0.100 Sum_probs=39.5
Q ss_pred CHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcC---------CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 20 TAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFG---------QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 20 ~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~---------~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+|..+..+-+...-..+.-+-+++..+|.+..+.+ .+..|++. |.+|+|||+ .++.+-+.+
T Consensus 5 ~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILli----Gp~G~GKT~---LAr~LAk~l 74 (443)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMI----GPTGVGKTE---IARRLAKLA 74 (443)
T ss_pred CHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 55566666555444445555566666665543321 25788888 999999999 777666655
No 215
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=45.28 E-value=8 Score=40.73 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=13.9
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|.||||||+ -.+.++.++
T Consensus 20 G~sGSGKT~---li~~lL~~~ 37 (241)
T PF04665_consen 20 GKSGSGKTT---LIKSLLYYL 37 (241)
T ss_pred CCCCCCHHH---HHHHHHHhh
Confidence 999999999 655555554
No 216
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=45.22 E-value=11 Score=41.21 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=29.8
Q ss_pred CCCCc----chhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 34 ELPPH----IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 34 ~~~PH----i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++||- +..+.+.-+..-.+-..+..|++. |.+|||||+ -++.+.+.|
T Consensus 107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~----G~~GsGKSt---vg~~La~~L 157 (309)
T PRK08154 107 QASPAQLARVRDALSGMLGAGRRAARRRRIALI----GLRGAGKST---LGRMLAARL 157 (309)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 45553 333333333333445677899999 999999999 666555443
No 217
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=45.03 E-value=8.7 Score=41.21 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=18.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.||+. |.+|||||+ -++.+.+.+
T Consensus 3 ~liil~----G~pGSGKST---la~~L~~~~ 26 (300)
T PHA02530 3 KIILTV----GVPGSGKST---WAREFAAKN 26 (300)
T ss_pred EEEEEE----cCCCCCHHH---HHHHHHHHC
Confidence 567787 999999999 666655544
No 218
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=45.00 E-value=8.8 Score=39.06 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~G~~~~l~----G~nGsGKST 45 (218)
T cd03255 28 EKGEFVAIV----GPSGSGKST 45 (218)
T ss_pred cCCCEEEEE----cCCCCCHHH
Confidence 456788888 999999999
No 219
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=44.84 E-value=8.4 Score=38.56 Aligned_cols=9 Identities=44% Similarity=0.601 Sum_probs=8.8
Q ss_pred ccccccccc
Q psy14295 67 DEIGMGSET 75 (750)
Q Consensus 67 gESGaGKT~ 75 (750)
||||||||+
T Consensus 39 GESGSGKtT 47 (258)
T COG4107 39 GESGSGKTT 47 (258)
T ss_pred ecCCCcHHh
Confidence 999999999
No 220
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=44.53 E-value=9.4 Score=39.16 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (227)
T cd03260 24 PKGEITALI----GPSGCGKST 41 (227)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456888888 999999999
No 221
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.53 E-value=12 Score=36.79 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKSt 41 (173)
T cd03230 24 EKGEIYGLL----GPNGAGKTT 41 (173)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 222
>PLN03025 replication factor C subunit; Provisional
Probab=44.47 E-value=11 Score=41.03 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=24.6
Q ss_pred HHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 47 YTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 47 y~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.+...+.-..+++. |++|+|||. .++.+.+.+
T Consensus 25 L~~~~~~~~~~~lll~----Gp~G~GKTt---la~~la~~l 58 (319)
T PLN03025 25 LQVIARDGNMPNLILS----GPPGTGKTT---SILALAHEL 58 (319)
T ss_pred HHHHHhcCCCceEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4455555555667777 999999999 776666655
No 223
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=44.46 E-value=15 Score=36.61 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=24.3
Q ss_pred cchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 38 HIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 38 Hi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.++..=.+|+..+.. ++.+++. +++|+|||.
T Consensus 21 ~~~~~Q~~~~~~~~~---~~~~li~----~~TG~GKT~ 51 (203)
T cd00268 21 KPTPIQARAIPPLLS---GRDVIGQ----AQTGSGKTA 51 (203)
T ss_pred CCCHHHHHHHHHHhc---CCcEEEE----CCCCCcHHH
Confidence 355566777777776 5678888 999999998
No 224
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=44.45 E-value=11 Score=40.85 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=19.7
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
..+-+..+++. |++|+|||. .++.+.+.
T Consensus 39 ~~~~~~~lll~----G~~G~GKT~---la~~l~~~ 66 (316)
T PHA02544 39 KGRIPNMLLHS----PSPGTGKTT---VAKALCNE 66 (316)
T ss_pred cCCCCeEEEee----CcCCCCHHH---HHHHHHHH
Confidence 34446677778 999999999 65555443
No 225
>PRK07667 uridine kinase; Provisional
Probab=44.34 E-value=8.2 Score=38.88 Aligned_cols=22 Identities=9% Similarity=-0.120 Sum_probs=17.0
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|-|+ |.+|||||+ -++.+...|
T Consensus 20 IgI~----G~~gsGKSt---la~~L~~~l 41 (193)
T PRK07667 20 LGID----GLSRSGKTT---FVANLKENM 41 (193)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4556 999999999 776666665
No 226
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=44.25 E-value=12 Score=37.31 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=24.1
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+-++++++. |++|.|||+ .++.+.+.+
T Consensus 10 ~~~~~~~~L~~----G~~G~gkt~---~a~~~~~~l 38 (188)
T TIGR00678 10 KGRLAHAYLFA----GPEGVGKEL---LALALAKAL 38 (188)
T ss_pred cCCCCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34567999998 999999999 777777776
No 227
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=44.23 E-value=9.5 Score=36.07 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
..+..|+|. ||+|+||+.
T Consensus 19 ~~~~pvli~----GE~GtGK~~ 36 (138)
T PF14532_consen 19 KSSSPVLIT----GEPGTGKSL 36 (138)
T ss_dssp CSSS-EEEE----CCTTSSHHH
T ss_pred CCCCcEEEE----cCCCCCHHH
Confidence 567789999 999999999
No 228
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=44.16 E-value=12 Score=38.25 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (222)
T cd03224 24 PEGEIVALL----GRNGAGKTT 41 (222)
T ss_pred cCCeEEEEE----CCCCCCHHH
Confidence 456888888 999999999
No 229
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=44.12 E-value=17 Score=36.52 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=9.8
Q ss_pred ccccccccccc
Q psy14295 65 FLDEIGMGSET 75 (750)
Q Consensus 65 f~gESGaGKT~ 75 (750)
|.|-||||||+
T Consensus 28 ~TGLSGsGKST 38 (197)
T COG0529 28 FTGLSGSGKST 38 (197)
T ss_pred eecCCCCCHHH
Confidence 44999999999
No 230
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=44.02 E-value=10 Score=38.25 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=21.5
Q ss_pred HhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 49 HMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 49 ~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....+..++|+|. |..|+|||. -.+.+++.+
T Consensus 13 ~~l~~~~~~~~~l~----G~rg~GKTs---Ll~~~~~~~ 44 (234)
T PF01637_consen 13 ELLESGPSQHILLY----GPRGSGKTS---LLKEFINEL 44 (234)
T ss_dssp HCHHH--SSEEEEE----ESTTSSHHH---HHHHHHHHC
T ss_pred HHHHhhcCcEEEEE----cCCcCCHHH---HHHHHHHHh
Confidence 34455668999999 999999999 444444433
No 231
>PRK08356 hypothetical protein; Provisional
Probab=44.01 E-value=8.1 Score=38.88 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=14.7
Q ss_pred EEEeecCcccccccccccccccccch
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLS 83 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~ 83 (750)
-|+|+ |.+|||||+ -++.+
T Consensus 7 ~i~~~----G~~gsGK~t---~a~~l 25 (195)
T PRK08356 7 IVGVV----GKIAAGKTT---VAKFF 25 (195)
T ss_pred EEEEE----CCCCCCHHH---HHHHH
Confidence 46677 999999999 55544
No 232
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=43.97 E-value=11 Score=38.19 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=18.4
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
....+..|++. |.+|||||+ ....++..
T Consensus 11 ~~~~P~~~i~a----G~~GsGKSt---~~~~~~~~ 38 (199)
T PF06414_consen 11 PQEKPTLIIIA----GQPGSGKST---LARQLLEE 38 (199)
T ss_dssp --SS-EEEEEE----S-TTSTTHH---HHHHHHHH
T ss_pred cccCCEEEEEe----CCCCCCHHH---HHHHhhhh
Confidence 34678889998 999999999 55544443
No 233
>PRK06761 hypothetical protein; Provisional
Probab=43.90 E-value=8.4 Score=41.53 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=19.7
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|. |.+|||||+ -++.+.+.|
T Consensus 4 ~lIvI~----G~~GsGKTT---la~~L~~~L 27 (282)
T PRK06761 4 KLIIIE----GLPGFGKST---TAKMLNDIL 27 (282)
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 357788 999999999 777777776
No 234
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.86 E-value=12 Score=40.80 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=24.8
Q ss_pred hHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 43 GDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 43 a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.||-.+.-. ...+|+|+ |++|||||+ ..+.++.++
T Consensus 131 ~~~ayL~~~ie-~~~siii~----G~t~sGKTt---~lnall~~I 167 (312)
T COG0630 131 EQAAYLWLAIE-ARKSIIIC----GGTASGKTT---LLNALLDFI 167 (312)
T ss_pred HHHHHHHHHHH-cCCcEEEE----CCCCCCHHH---HHHHHHHhC
Confidence 44455433333 34789999 999999999 655555554
No 235
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=43.82 E-value=9.2 Score=45.34 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=19.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
+..+.+.|. |+||||||+ -.+.++.+
T Consensus 374 ~~G~~vaIv----G~SGsGKST---L~~lL~g~ 399 (588)
T PRK11174 374 PAGQRIALV----GPSGAGKTS---LLNALLGF 399 (588)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhcC
Confidence 566788888 999999999 54444443
No 236
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=43.81 E-value=9.3 Score=38.78 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 23 ~~Ge~~~l~----G~nGsGKST 40 (213)
T cd03235 23 KPGEFLAIV----GPNGAGKST 40 (213)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 237
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=43.75 E-value=14 Score=39.78 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=22.2
Q ss_pred HHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 47 YTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 47 y~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+...+.+..-.+++. |+.|+|||+ .++.+.+.+
T Consensus 29 l~~~i~~~~~~~~ll~----G~~G~GKt~---~~~~l~~~l 62 (319)
T PRK00440 29 LKSYVKEKNMPHLLFA----GPPGTGKTT---AALALAREL 62 (319)
T ss_pred HHHHHhCCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3344444433357777 999999999 666655554
No 238
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=43.73 E-value=12 Score=37.89 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~G~~~~i~----G~nGsGKST 41 (208)
T cd03268 24 KKGEIYGFL----GPNGAGKTT 41 (208)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 239
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=43.71 E-value=8.8 Score=41.52 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=14.1
Q ss_pred CeEEEeecCccccccccccc
Q psy14295 56 DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~ 75 (750)
.+-|+|+ |.||||||+
T Consensus 6 ~~~i~i~----G~~GsGKtt 21 (288)
T PRK05416 6 MRLVIVT----GLSGAGKSV 21 (288)
T ss_pred ceEEEEE----CCCCCcHHH
Confidence 3578888 999999999
No 240
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=43.63 E-value=12 Score=38.36 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~l~----G~nGsGKST 41 (232)
T cd03218 24 KQGEIVGLL----GPNGAGKTT 41 (232)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 241
>PRK14531 adenylate kinase; Provisional
Probab=43.61 E-value=9.4 Score=38.00 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.4
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|-|++. |.+|||||+ -++.+.+.+
T Consensus 3 ~~i~i~----G~pGsGKsT---~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFL----GPPGAGKGT---QAARLCAAH 26 (183)
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 457787 999999999 666655554
No 242
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=43.53 E-value=9 Score=41.75 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=16.7
Q ss_pred eEEEeecCcccccccccccccccccchhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
-.++|. |+||+|||+ .+-.+++.
T Consensus 147 ~GvLi~----G~SG~GKSe---lALeLi~r 169 (308)
T PRK05428 147 IGVLIT----GESGIGKSE---TALELIKR 169 (308)
T ss_pred EEEEEE----cCCCCCHHH---HHHHHHHc
Confidence 566777 999999999 65444443
No 243
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.50 E-value=9.8 Score=39.47 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (239)
T cd03296 26 PSGELVALL----GPSGSGKTT 43 (239)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456888888 999999999
No 244
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=43.41 E-value=14 Score=39.62 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=24.0
Q ss_pred hhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 40 FAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 40 ~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
...++.....+.+.+.-+.++|. |.+|||||+
T Consensus 95 ~~~~~~~l~~l~~~~~~~~~~i~----g~~g~GKtt 126 (270)
T TIGR02858 95 LGAADKLLPYLVRNNRVLNTLII----SPPQCGKTT 126 (270)
T ss_pred CCcHHHHHHHHHhCCCeeEEEEE----cCCCCCHHH
Confidence 34556666666655555889998 999999999
No 245
>PRK03839 putative kinase; Provisional
Probab=43.40 E-value=8.6 Score=37.95 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=16.7
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |-+|||||+ -++.+-+.+
T Consensus 3 I~l~----G~pGsGKsT---~~~~La~~~ 24 (180)
T PRK03839 3 IAIT----GTPGVGKTT---VSKLLAEKL 24 (180)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 6777 999999999 666555544
No 246
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=43.40 E-value=13 Score=39.01 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=16.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-+-|.|- |+||||||+ +++.+
T Consensus 29 ~GE~VaiI----G~SGaGKST-------LLR~l 50 (258)
T COG3638 29 QGEMVAII----GPSGAGKST-------LLRSL 50 (258)
T ss_pred CCcEEEEE----CCCCCcHHH-------HHHHH
Confidence 34556666 999999999 66666
No 247
>PRK10436 hypothetical protein; Provisional
Probab=43.37 E-value=9 Score=44.24 Aligned_cols=26 Identities=27% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCeE-EEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQC-IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~Qs-Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.++. |+|+ |.+|||||+ +...++.++
T Consensus 216 ~~~GliLvt----GpTGSGKTT---tL~a~l~~~ 242 (462)
T PRK10436 216 QPQGLILVT----GPTGSGKTV---TLYSALQTL 242 (462)
T ss_pred hcCCeEEEE----CCCCCChHH---HHHHHHHhh
Confidence 3454 6677 999999999 766666665
No 248
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=43.12 E-value=14 Score=36.65 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=17.7
Q ss_pred CCCeEEEeecCcccccccccccccccccch
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLS 83 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~ 83 (750)
..+..|+|. ||+|+||+. -++.+
T Consensus 20 ~~~~pVlI~----GE~GtGK~~---lA~~I 42 (168)
T PF00158_consen 20 SSDLPVLIT----GETGTGKEL---LARAI 42 (168)
T ss_dssp TSTS-EEEE----CSTTSSHHH---HHHHH
T ss_pred CCCCCEEEE----cCCCCcHHH---HHHHH
Confidence 567889999 999999999 55443
No 249
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=43.05 E-value=10 Score=35.80 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=19.9
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+....|+++ |+-|||||+ =+|.+.+.|
T Consensus 13 ~~g~vi~L~----GdLGaGKTt---f~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLS----GDLGAGKTT---FVRGLARAL 39 (123)
T ss_dssp SS-EEEEEE----ESTTSSHHH---HHHHHHHHT
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 455678888 999999999 666555555
No 250
>KOG0245|consensus
Probab=43.04 E-value=1.3e+02 Score=37.83 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=42.1
Q ss_pred cCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhh-------cCCCeEEEeecCccccccccccc
Q psy14295 4 GSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKR-------FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 4 g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~-------~~~~QsIiis~~f~gESGaGKT~ 75 (750)
|+..=.+||-.+-.-++=.+=..|..... -.|| ||-=.++|+.+-+ .+.|=||+-= |-+|||||.
T Consensus 32 gn~ttii~~~~~k~~~~FtfD~SYWS~d~--edPh-fAsQ~qVYedlg~~mL~~AfEGYN~ClFAY----GQTGSGKSY 103 (1221)
T KOG0245|consen 32 GNTTTIINPKGSKDAPKFTFDYSYWSHDS--EDPH-FASQKQVYEDLGREMLDHAFEGYNVCLFAY----GQTGSGKSY 103 (1221)
T ss_pred CCceeeecCCCcccCCceecceeeecCCC--CCCc-hhhHHHHHHHHhHHHHHHHhcccceEEEEe----ccCCCCcce
Confidence 56666677764443322111223444433 5688 7777778876544 4889999887 999999998
No 251
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=42.96 E-value=9.8 Score=38.31 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 22 ~~Ge~~~i~----G~nGsGKST 39 (206)
T TIGR03608 22 EKGKMYAII----GESGSGKST 39 (206)
T ss_pred eCCcEEEEE----CCCCCCHHH
Confidence 356777787 999999999
No 252
>PRK08727 hypothetical protein; Validated
Probab=42.83 E-value=15 Score=38.25 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=15.7
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
....+.|++. |+||+|||.
T Consensus 38 ~~~~~~l~l~----G~~G~GKTh 56 (233)
T PRK08727 38 GQSSDWLYLS----GPAGTGKTH 56 (233)
T ss_pred ccCCCeEEEE----CCCCCCHHH
Confidence 3445779998 999999998
No 253
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=42.82 E-value=12 Score=37.35 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.4
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..-.|.|. |.||+|||+
T Consensus 28 ~Ge~iait----GPSG~GKSt 44 (223)
T COG4619 28 AGEFIAIT----GPSGCGKST 44 (223)
T ss_pred CCceEEEe----CCCCccHHH
Confidence 34678888 999999999
No 254
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=42.74 E-value=10 Score=39.35 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~l~----G~nGsGKST 43 (243)
T TIGR02315 26 NPGEFVAII----GPSGAGKST 43 (243)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 566888888 999999999
No 255
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=42.65 E-value=9.1 Score=37.98 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=19.0
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-.|++. |.||||||+ -++.+...+
T Consensus 17 ~~~~i~i~----G~~GsGKst---la~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLT----GLSGSGKST---IANALEKKL 42 (184)
T ss_pred CCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34467777 999999999 666555554
No 256
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=42.54 E-value=9 Score=41.00 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.2
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|-|+ |-||||||+ -++.+.+.|
T Consensus 2 IgIt----G~SGSGKTT---v~~~l~~~l 23 (277)
T cd02029 2 IAVT----GSSGAGTTT---VKRAFEHIF 23 (277)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 5567 999999999 666666655
No 257
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.47 E-value=10 Score=37.40 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~G~~~~i~----G~nGsGKST 41 (178)
T cd03229 24 EAGEIVALL----GPSGSGKST 41 (178)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=42.44 E-value=9.8 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=16.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.|++- |.+|+|||+ +.-.+-.++
T Consensus 2 ~vi~lv----GptGvGKTT---t~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALV----GPTGVGKTT---TIAKLAARL 25 (196)
T ss_dssp EEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred EEEEEE----CCCCCchHh---HHHHHHHHH
Confidence 456666 999999998 654444444
No 259
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=42.41 E-value=25 Score=40.97 Aligned_cols=56 Identities=30% Similarity=0.341 Sum_probs=33.9
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhhhhhhhhhhcccCC-CcccccccCCCCCChhhHHHhhchHHHHhcC
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNC-QPFFIRCIKPNEFKKPMQILEANPILEAFGN 131 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l~~~~~l~~~~s~~-~~~~~~~~~~~~~~i~~~il~sn~iLEaFGN 131 (750)
.+.|=+|+|. ||||.||.- +-++. -..|.. ...|+ .-+...|++.+++| |-||-
T Consensus 265 A~tdstVLi~----GESGTGKEl-------fA~~I-------H~~S~R~~~PFI---aiNCaAiPe~LlES----ELFGy 319 (560)
T COG3829 265 AKTDSTVLIL----GESGTGKEL-------FARAI-------HNLSPRANGPFI---AINCAAIPETLLES----ELFGY 319 (560)
T ss_pred cCCCCcEEEe----cCCCccHHH-------HHHHH-------HhcCcccCCCeE---EEecccCCHHHHHH----HHhCc
Confidence 4788999999 999999977 33444 223322 11222 11234577777777 67886
Q ss_pred cc
Q psy14295 132 AK 133 (750)
Q Consensus 132 Ak 133 (750)
.+
T Consensus 320 e~ 321 (560)
T COG3829 320 EK 321 (560)
T ss_pred CC
Confidence 43
No 260
>PF13479 AAA_24: AAA domain
Probab=42.40 E-value=12 Score=38.44 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=15.1
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
++..|+|- |+||+|||.
T Consensus 2 ~~~~~lIy----G~~G~GKTt 18 (213)
T PF13479_consen 2 KPIKILIY----GPPGSGKTT 18 (213)
T ss_pred CceEEEEE----CCCCCCHHH
Confidence 56788898 999999998
No 261
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=42.39 E-value=11 Score=44.79 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 35 LPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 35 ~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++|-|.++-.++| -.+.++.-.|++. |.||||||+ -++.+...|
T Consensus 373 ~rpeV~~iL~~~~--~~r~~~g~~Ivl~----Gl~GSGKST---ia~~La~~L 416 (568)
T PRK05537 373 SFPEVVAELRRTY--PPRHKQGFTVFFT----GLSGAGKST---IAKALMVKL 416 (568)
T ss_pred cHHHHHHHHHHHh--ccccCCCeEEEEE----CCCCChHHH---HHHHHHHHh
Confidence 3344444444444 2334555678888 999999999 666666555
No 262
>PRK14528 adenylate kinase; Provisional
Probab=42.30 E-value=10 Score=38.02 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=18.3
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+-|+|. |.+|||||+ .++.+.+.+
T Consensus 2 ~~i~i~----G~pGsGKtt---~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFM----GPPGAGKGT---QAKILCERL 25 (186)
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 347888 999999999 766655544
No 263
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=42.24 E-value=13 Score=37.84 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 29 ~~Ge~~~i~----G~nGsGKST 46 (218)
T cd03266 29 KPGEVTGLL----GPNGAGKTT 46 (218)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456888888 999999999
No 264
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=42.23 E-value=10 Score=39.08 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~l~----G~nGsGKST 41 (236)
T cd03219 24 RPGEIHGLI----GPNGAGKTT 41 (236)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 265
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=42.11 E-value=10 Score=37.62 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=16.3
Q ss_pred eEEEeecCcccccccccccccccccchhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
.-|||+ |+||||||+ -.+.+++
T Consensus 3 r~ivl~----Gpsg~GK~~---l~~~L~~ 24 (183)
T PF00625_consen 3 RPIVLV----GPSGSGKST---LAKRLIQ 24 (183)
T ss_dssp SEEEEE----SSTTSSHHH---HHHHHHH
T ss_pred CEEEEE----CCCCCCHHH---HHHHHHH
Confidence 457888 999999999 4444444
No 266
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.10 E-value=10 Score=39.13 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (241)
T cd03256 25 NPGEFVALI----GPSGAGKST 42 (241)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 267
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=42.09 E-value=11 Score=40.39 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=19.2
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|++. |.+|+|||+ ++..+..++
T Consensus 194 ~~vi~~v----GptGvGKTT---t~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALV----GPTGVGKTT---TLAKLAARF 218 (282)
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3466666 999999999 776666666
No 268
>KOG3354|consensus
Probab=41.85 E-value=11 Score=37.01 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=19.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
=.|++. |-||||||+ ..|.+..-|
T Consensus 13 ~~i~vm----GvsGsGKST---igk~L~~~l 36 (191)
T KOG3354|consen 13 YVIVVM----GVSGSGKST---IGKALSEEL 36 (191)
T ss_pred eeEEEE----ecCCCChhh---HHHHHHHHh
Confidence 368888 999999999 777766655
No 269
>PRK06893 DNA replication initiation factor; Validated
Probab=41.83 E-value=20 Score=37.12 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=15.4
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+-++++. |+||+|||.
T Consensus 36 ~~~~~~l~l~----G~~G~GKTh 54 (229)
T PRK06893 36 DLQQPFFYIW----GGKSSGKSH 54 (229)
T ss_pred ccCCCeEEEE----CCCCCCHHH
Confidence 4455677787 999999998
No 270
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=41.76 E-value=11 Score=38.24 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~G~~~~l~----G~nGsGKST 41 (213)
T cd03262 24 KKGEVVVII----GPSGSGKST 41 (213)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 271
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.71 E-value=14 Score=41.93 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 45 NGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 45 ~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+...+...++++. |++|+|||+ .++.+.+.+
T Consensus 25 ~~L~~~i~~~~~~~ilL~----GppGtGKTt---LA~~ia~~~ 60 (413)
T PRK13342 25 KPLRRMIEAGRLSSMILW----GPPGTGKTT---LARIIAGAT 60 (413)
T ss_pred hHHHHHHHcCCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 445666666777789998 999999999 666554433
No 272
>PRK00698 tmk thymidylate kinase; Validated
Probab=41.67 E-value=11 Score=37.57 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=18.2
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-.|+|. |.+|||||+ -++.+-++|
T Consensus 4 ~~I~ie----G~~gsGKsT---~~~~L~~~l 27 (205)
T PRK00698 4 MFITIE----GIDGAGKST---QIELLKELL 27 (205)
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 357777 999999999 666655555
No 273
>KOG2002|consensus
Probab=41.64 E-value=4.5e+02 Score=33.08 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=14.1
Q ss_pred CCeeeecccceEEeecc
Q psy14295 568 TSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 568 ~~F~I~H~aG~V~Yd~~ 584 (750)
+.-.|+||-|.+.|+.+
T Consensus 714 ~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAG 730 (1018)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 45789999999988886
No 274
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=41.47 E-value=9.5 Score=39.95 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.7
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|++. |-+|||||+ -++.+-+++
T Consensus 2 Ivl~----G~pGSGKST---~a~~La~~l 23 (249)
T TIGR03574 2 IILT----GLPGVGKST---FSKELAKKL 23 (249)
T ss_pred EEEE----cCCCCCHHH---HHHHHHHHH
Confidence 5566 999999999 777777766
No 275
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=41.42 E-value=11 Score=44.64 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=22.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+-|- |+||||||+ -.+.+++++
T Consensus 353 ~~Ge~vaiV----G~sGsGKST---l~~LL~r~~ 379 (567)
T COG1132 353 EPGEKVAIV----GPSGSGKST---LIKLLLRLY 379 (567)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhccC
Confidence 456777666 999999999 888888887
No 276
>PRK09087 hypothetical protein; Validated
Probab=41.38 E-value=20 Score=37.27 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.2
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
.+..++|. |+||+|||.
T Consensus 43 ~~~~l~l~----G~~GsGKTh 59 (226)
T PRK09087 43 PSPVVVLA----GPVGSGKTH 59 (226)
T ss_pred CCCeEEEE----CCCCCCHHH
Confidence 35567888 999999998
No 277
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.24 E-value=11 Score=38.46 Aligned_cols=17 Identities=18% Similarity=0.220 Sum_probs=14.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
.. +.+.|. |++|||||+
T Consensus 22 ~~-e~~~i~----G~nGsGKST 38 (214)
T cd03297 22 NE-EVTGIF----GASGAGKST 38 (214)
T ss_pred cc-eeEEEE----CCCCCCHHH
Confidence 45 788888 999999999
No 278
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=41.16 E-value=11 Score=38.96 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (236)
T TIGR03864 25 RPGEFVALL----GPNGAGKST 42 (236)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 279
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=41.15 E-value=21 Score=36.89 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=18.1
Q ss_pred HHHHHhhhcCC--CeEEEeecCccccccccccc
Q psy14295 45 NGYTHMKRFGQ--DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 45 ~ay~~~~~~~~--~QsIiis~~f~gESGaGKT~ 75 (750)
.+-..+..... -..++|. |++|+|||.
T Consensus 21 ~~~~~ia~~~~~~~~~l~l~----G~~G~GKTH 49 (219)
T PF00308_consen 21 AAAKAIAENPGERYNPLFLY----GPSGLGKTH 49 (219)
T ss_dssp HHHHHHHHSTTTSSSEEEEE----ESTTSSHHH
T ss_pred HHHHHHHhcCCCCCCceEEE----CCCCCCHHH
Confidence 34444444322 3568888 999999998
No 280
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=40.97 E-value=9.9 Score=37.87 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.4
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
-||++ |.|||||++
T Consensus 4 ~ivl~----Gpsg~GK~t 17 (184)
T smart00072 4 PIVLS----GPSGVGKGT 17 (184)
T ss_pred EEEEE----CCCCCCHHH
Confidence 47777 999999999
No 281
>PRK10908 cell division protein FtsE; Provisional
Probab=40.93 E-value=14 Score=37.85 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (222)
T PRK10908 26 RPGEMAFLT----GHSGAGKST 43 (222)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 467788888 999999999
No 282
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=40.91 E-value=11 Score=37.99 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (205)
T cd03226 24 YAGEIIALT----GKNGAGKTT 41 (205)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 283
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=40.89 E-value=13 Score=33.52 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=14.6
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.+|+|||. +++.|
T Consensus 2 I~V~----G~~g~GKTs-------Li~~l 19 (119)
T PF08477_consen 2 IVVL----GDSGVGKTS-------LIRRL 19 (119)
T ss_dssp EEEE----CSTTSSHHH-------HHHHH
T ss_pred EEEE----CcCCCCHHH-------HHHHH
Confidence 5566 999999999 66666
No 284
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=40.88 E-value=17 Score=40.52 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=28.0
Q ss_pred HHHHHHhhh-cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 44 DNGYTHMKR-FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 44 ~~ay~~~~~-~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+..+.+ .+-+++++++ |+.|.|||+ .++.+.++|
T Consensus 32 ~~~L~~a~~~grl~ha~L~~----G~~G~GKtt---lA~~lA~~L 69 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFE----GPEGIGKAT---LAFHLANHI 69 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeE----CCCCCCHHH---HHHHHHHHH
Confidence 344444444 4568999999 999999999 777777776
No 285
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.85 E-value=12 Score=43.65 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=24.6
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+-+|+++++ |..|.|||+ .++.+-+.|
T Consensus 31 ~~ri~ha~Lf~----Gp~G~GKTT---~ArilAk~L 59 (491)
T PRK14964 31 LNKIPQSILLV----GASGVGKTT---CARIISLCL 59 (491)
T ss_pred cCCCCceEEEE----CCCCccHHH---HHHHHHHHH
Confidence 45678999999 999999999 888777766
No 286
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=40.78 E-value=17 Score=43.56 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=23.7
Q ss_pred HhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 49 HMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 49 ~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.....++.++|. ||+|+|||+ .++.+....
T Consensus 168 ~~ia~~~~~~vlL~----Gp~GtGKTT---LAr~i~~~~ 199 (615)
T TIGR02903 168 AKVASPFPQHIILY----GPPGVGKTT---AARLALEEA 199 (615)
T ss_pred HHHhcCCCCeEEEE----CCCCCCHHH---HHHHHHHhh
Confidence 33345667889998 999999999 666655544
No 287
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.76 E-value=11 Score=36.87 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=16.4
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|++. |++|+|||+ .+..+...+
T Consensus 3 ~~~~----G~~G~GKTt---~~~~la~~~ 24 (173)
T cd03115 3 ILLV----GLQGVGKTT---TAAKLALYL 24 (173)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4556 999999999 665555555
No 288
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.73 E-value=17 Score=42.08 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=26.0
Q ss_pred HHHhhh-cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 47 YTHMKR-FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 47 y~~~~~-~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..++.. .+-.+++|++ |+.|.|||+ .++.+.+.+
T Consensus 30 L~~~i~~~ri~ha~Lf~----GP~GtGKTT---lAriLAk~L 64 (484)
T PRK14956 30 LQNALKSGKIGHAYIFF----GPRGVGKTT---IARILAKRL 64 (484)
T ss_pred HHHHHHcCCCCeEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 344444 3446788888 999999999 888888877
No 289
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=40.62 E-value=12 Score=38.08 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (207)
T PRK13539 26 AAGEALVLT----GPNGSGKTT 43 (207)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 290
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=40.61 E-value=11 Score=38.99 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (242)
T PRK11124 26 PQGETLVLL----GPSGAGKSS 43 (242)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456888888 999999999
No 291
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=40.40 E-value=11 Score=33.89 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.0
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++|. |++|+|||. ..-..+..+
T Consensus 3 ~~i~----~~~G~GKT~---~~~~~~~~~ 24 (144)
T cd00046 3 VLLA----APTGSGKTL---AALLPILEL 24 (144)
T ss_pred EEEE----CCCCCchhH---HHHHHHHHH
Confidence 5666 999999998 655555444
No 292
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=40.35 E-value=14 Score=36.80 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=14.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
....-+.|. |+||||||+
T Consensus 19 ~~G~~~~l~----G~nG~GKST 36 (176)
T cd03238 19 PLNVLVVVT----GVSGSGKST 36 (176)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 344566677 999999999
No 293
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=40.34 E-value=11 Score=44.66 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=20.0
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|.|.|. |+||||||+ =.+.++..+
T Consensus 365 ~~Ge~iaIv----G~SGsGKST---Ll~lL~gl~ 391 (592)
T PRK10790 365 PSRGFVALV----GHTGSGKST---LASLLMGYY 391 (592)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhccc
Confidence 567888888 999999999 444444433
No 294
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.31 E-value=12 Score=38.28 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (220)
T cd03265 24 RRGEIFGLL----GPNGAGKTT 41 (220)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 295
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.28 E-value=12 Score=37.94 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~G~~~~i~----G~nGsGKST 41 (210)
T cd03269 24 EKGEIFGLL----GPNGAGKTT 41 (210)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 296
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=40.18 E-value=12 Score=38.56 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~l~----G~nGsGKST 41 (230)
T TIGR03410 24 PKGEVTCVL----GRNGVGKTT 41 (230)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 297
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=40.16 E-value=12 Score=36.86 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.2
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
+++|. |++|+|||.
T Consensus 1 ~~li~----G~~G~GKT~ 14 (187)
T cd01124 1 STLLS----GGPGTGKTT 14 (187)
T ss_pred CEEEE----cCCCCCHHH
Confidence 36778 999999998
No 298
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=40.06 E-value=12 Score=36.66 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (166)
T cd03223 25 KPGDRLLIT----GPSGTGKSS 42 (166)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 299
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=40.06 E-value=11 Score=45.68 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=20.4
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|.|.|. |+||||||+ -.|.++..+
T Consensus 498 ~~G~~vaIv----G~SGsGKST---LlklL~gl~ 524 (708)
T TIGR01193 498 KMNSKTTIV----GMSGSGKST---LAKLLVGFF 524 (708)
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHhccC
Confidence 567888888 999999999 555544444
No 300
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=40.01 E-value=12 Score=38.16 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~G~~~~i~----G~nGsGKST 45 (220)
T cd03245 28 RAGEKVAII----GRVGSGKST 45 (220)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567788888 999999999
No 301
>PHA00729 NTP-binding motif containing protein
Probab=40.00 E-value=17 Score=37.85 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=20.0
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-..|+|+ |.+|+|||. -+..+.+.+
T Consensus 16 ~f~nIlIt----G~pGvGKT~---LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIF----GKQGSGKTT---YALKVARDV 41 (226)
T ss_pred CeEEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34689999 999999998 666655544
No 302
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=39.99 E-value=12 Score=38.76 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 9 ~~Ge~~~i~----G~nGsGKST 26 (230)
T TIGR01184 9 QQGEFISLI----GHSGCGKST 26 (230)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 345677777 999999999
No 303
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.93 E-value=14 Score=38.44 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 27 ~~Ge~~~i~----G~nGsGKST 44 (250)
T PRK14247 27 PDNTITALM----GPSGSGKST 44 (250)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 304
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=39.86 E-value=15 Score=38.42 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 27 ~~Ge~~~i~----G~nGsGKST 44 (253)
T TIGR02323 27 YPGEVLGIV----GESGSGKST 44 (253)
T ss_pred eCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 305
>PRK06620 hypothetical protein; Validated
Probab=39.83 E-value=23 Score=36.51 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=13.7
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
.+++|. |++|+|||.
T Consensus 45 ~~l~l~----Gp~G~GKTh 59 (214)
T PRK06620 45 FTLLIK----GPSSSGKTY 59 (214)
T ss_pred ceEEEE----CCCCCCHHH
Confidence 678888 999999998
No 306
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.65 E-value=16 Score=37.53 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=16.1
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
-...|.+.|. |++|||||+
T Consensus 26 i~~G~~~~i~----G~nGsGKST 44 (229)
T cd03254 26 IKPGETVAIV----GPTGAGKTT 44 (229)
T ss_pred EcCCCEEEEE----CCCCCCHHH
Confidence 3566888888 999999999
No 307
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=39.60 E-value=12 Score=38.95 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (247)
T TIGR00972 25 PKNQVTALI----GPSGCGKST 42 (247)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 308
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=39.34 E-value=13 Score=38.57 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (243)
T TIGR01978 24 KKGEIHAIM----GPNGSGKST 41 (243)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 309
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=39.32 E-value=11 Score=44.67 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=18.5
Q ss_pred CeE-EEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQC-IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~Qs-Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++. |+|+ |++|||||+ +...++.++
T Consensus 315 ~~Glilv~----G~tGSGKTT---tl~a~l~~~ 340 (564)
T TIGR02538 315 PQGMVLVT----GPTGSGKTV---SLYTALNIL 340 (564)
T ss_pred cCCeEEEE----CCCCCCHHH---HHHHHHHhh
Confidence 344 5677 999999999 765566655
No 310
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=39.29 E-value=13 Score=38.25 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 31 ~~Ge~~~l~----G~nGsGKST 48 (226)
T cd03234 31 ESGQVMAIL----GSSGSGKTT 48 (226)
T ss_pred cCCeEEEEE----CCCCCCHHH
Confidence 567888888 999999999
No 311
>PRK15453 phosphoribulokinase; Provisional
Probab=39.23 E-value=11 Score=40.67 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=16.6
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|.|+ |-||||||+ -++.+.+-|
T Consensus 7 iI~It----G~SGsGKTT---va~~l~~if 29 (290)
T PRK15453 7 IIAVT----GSSGAGTTT---VKRAFEKIF 29 (290)
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 46777 999999999 555444433
No 312
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.20 E-value=12 Score=39.67 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=15.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 48 ~~Ge~~~l~----G~nGsGKST 65 (269)
T cd03294 48 REGEIFVIM----GLSGSGKST 65 (269)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 466888888 999999999
No 313
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=39.16 E-value=17 Score=39.63 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=21.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.+=.|+|+ |.||+|||+ .+..+..+|
T Consensus 90 ~~p~iIlI~----G~sgsGKSt---lA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIG----GASGVGTST---IAFELASRL 116 (301)
T ss_pred CCCEEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 456678888 999999999 777776666
No 314
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=39.00 E-value=15 Score=37.40 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 29 ~~G~~~~i~----G~nGsGKST 46 (221)
T TIGR02211 29 GKGEIVAIV----GSSGSGKST 46 (221)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456778788 999999999
No 315
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.98 E-value=13 Score=38.52 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=14.9
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~l~----G~nGsGKST 41 (235)
T cd03261 24 RRGEILAII----GPSGSGKST 41 (235)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 455677777 999999999
No 316
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=38.96 E-value=13 Score=40.55 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=16.8
Q ss_pred CeEEEeecCcccccccccccccccccchhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
...++|. |+||+|||+ .+-.+++
T Consensus 146 g~gvli~----G~sg~GKS~---lal~Li~ 168 (304)
T TIGR00679 146 GVGVLIT----GKSGVGKSE---TALELIN 168 (304)
T ss_pred CEEEEEE----cCCCCCHHH---HHHHHHH
Confidence 3667777 999999999 6544444
No 317
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=38.66 E-value=8.2 Score=47.00 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.3
Q ss_pred Ccccccccccccccccccchhhhh
Q psy14295 64 LFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 64 ~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
||+|+||.|||| .+|.+-.+|
T Consensus 525 lF~GPTGVGKTE---LAkaLA~~L 545 (786)
T COG0542 525 LFLGPTGVGKTE---LAKALAEAL 545 (786)
T ss_pred EeeCCCcccHHH---HHHHHHHHh
Confidence 456999999999 888888887
No 318
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.61 E-value=20 Score=40.53 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=27.7
Q ss_pred HHHHhhhc-CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 46 GYTHMKRF-GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 46 ay~~~~~~-~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.++++.+. +-++++|++ |+.|.|||+ .++.+-+.+
T Consensus 27 ~L~~~~~~~~~~ha~lf~----Gp~G~GKtt---~A~~~a~~l 62 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFS----GLRGVGKTT---AARVFAKAV 62 (397)
T ss_pred HHHHHHHhCCcceeEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 45555554 567889998 999999999 888877777
No 319
>PRK00023 cmk cytidylate kinase; Provisional
Probab=38.52 E-value=11 Score=38.98 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=19.9
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-.|.|+ |.+|||||+ .++.+.+.+
T Consensus 5 ~~i~i~----g~~gsGkst---i~~~la~~~ 28 (225)
T PRK00023 5 IVIAID----GPAGSGKGT---VAKILAKKL 28 (225)
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 457778 999999999 888777766
No 320
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=38.45 E-value=13 Score=43.86 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=16.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
+..+.|.|. |+||||||+
T Consensus 356 ~~G~~v~Iv----G~sGsGKST 373 (571)
T TIGR02203 356 EPGETVALV----GRSGSGKST 373 (571)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567889998 999999999
No 321
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=38.42 E-value=13 Score=45.15 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.|.++..+
T Consensus 477 ~~Ge~vaIv----G~sGsGKST---LlklL~gl~ 503 (686)
T TIGR03797 477 EPGEFVAIV----GPSGSGKST---LLRLLLGFE 503 (686)
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHhCCC
Confidence 567888888 999999999 555555444
No 322
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.34 E-value=12 Score=43.32 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=21.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.++|.||+ |.|.+|||||+ +.-.+++++
T Consensus 255 ~~p~GliL---vTGPTGSGKTT---TLY~~L~~l 282 (500)
T COG2804 255 NRPQGLIL---VTGPTGSGKTT---TLYAALSEL 282 (500)
T ss_pred hCCCeEEE---EeCCCCCCHHH---HHHHHHHHh
Confidence 56788754 24999999999 776666666
No 323
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=38.31 E-value=13 Score=38.94 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 30 ~~Ge~~~i~----G~nGsGKST 47 (253)
T PRK14242 30 EQNQVTALI----GPSGCGKST 47 (253)
T ss_pred eCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 324
>PRK02496 adk adenylate kinase; Provisional
Probab=38.25 E-value=12 Score=37.11 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=16.4
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.+|||||+ -++.+.+.+
T Consensus 4 i~i~----G~pGsGKst---~a~~la~~~ 25 (184)
T PRK02496 4 LIFL----GPPGAGKGT---QAVVLAEHL 25 (184)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 6666 999999999 666555444
No 325
>PRK14530 adenylate kinase; Provisional
Probab=38.16 E-value=12 Score=38.34 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=17.8
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|. |.+|||||+ -++.+.+.+
T Consensus 5 ~I~i~----G~pGsGKsT---~~~~La~~~ 27 (215)
T PRK14530 5 RILLL----GAPGAGKGT---QSSNLAEEF 27 (215)
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 36777 999999999 776666555
No 326
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=38.14 E-value=13 Score=39.02 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.6
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.+.|. |++|||||+
T Consensus 24 ~Ge~~~i~----G~NGsGKST 40 (246)
T cd03237 24 ESEVIGIL----GPNGIGKTT 40 (246)
T ss_pred CCCEEEEE----CCCCCCHHH
Confidence 45777787 999999999
No 327
>KOG0377|consensus
Probab=38.11 E-value=40 Score=38.16 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=10.7
Q ss_pred hHHHHHHHHHhHHHHHHHH
Q psy14295 662 HIVGLQARARGYLTRRMYA 680 (750)
Q Consensus 662 aai~IQa~~Rg~laRr~y~ 680 (750)
+|+.||.|+|+|.+|.+.+
T Consensus 19 aAilIQkWYRr~~ARle~r 37 (631)
T KOG0377|consen 19 AAILIQKWYRRYEARLEAR 37 (631)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555443
No 328
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=38.05 E-value=13 Score=39.12 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (255)
T PRK11248 25 ESGELLVVL----GPSGCGKTT 42 (255)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 329
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=38.05 E-value=13 Score=44.16 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=19.8
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.|.|. |+||||||+ =.|.++...
T Consensus 359 ~~G~~v~Iv----G~sGsGKST---Ll~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIV----GPTGAGKST---LINLLQRVF 385 (588)
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHhcCc
Confidence 566888888 999999999 444444433
No 330
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=38.01 E-value=13 Score=38.27 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 10 ~~Ge~~~i~----G~nGsGKST 27 (230)
T TIGR02770 10 KRGEVLALV----GESGSGKSL 27 (230)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 331
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.99 E-value=13 Score=39.99 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 35 ~~Ge~~~l~----G~nGsGKST 52 (289)
T PRK13645 35 KKNKVTCVI----GTTGSGKST 52 (289)
T ss_pred eCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 332
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=37.82 E-value=14 Score=37.52 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~l~----G~nGsGKST 41 (213)
T cd03301 24 ADGEFVVLL----GPSGCGKTT 41 (213)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 333
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.82 E-value=17 Score=36.85 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=15.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 31 ~~Ge~~~i~----G~nGsGKST 48 (202)
T cd03233 31 KPGEMVLVL----GRPGSGCST 48 (202)
T ss_pred CCCcEEEEE----CCCCCCHHH
Confidence 566788888 999999999
No 334
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=37.82 E-value=12 Score=39.42 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-.+++. |++|+|||. .++.+-+.+
T Consensus 41 ~~~~vll~----GppGtGKTt---lA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFK----GNPGTGKTT---VARILGKLF 66 (261)
T ss_pred CcceEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 34567777 999999999 887777766
No 335
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=37.80 E-value=16 Score=36.15 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=15.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~G~~~~i~----G~nGsGKST 41 (182)
T cd03215 24 RAGEIVGIA----GLVGNGQTE 41 (182)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 336
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=37.77 E-value=13 Score=43.81 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=20.2
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
-+..+.|.|. |+||||||+ -.|.++..
T Consensus 363 i~~Ge~i~Iv----G~sGsGKST---LlklL~gl 389 (576)
T TIGR02204 363 VRPGETVALV----GPSGAGKST---LFQLLLRF 389 (576)
T ss_pred ecCCCEEEEE----CCCCCCHHH---HHHHHHhc
Confidence 4577888888 999999999 44444443
No 337
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=37.63 E-value=12 Score=38.16 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHhhcCCChhhHHH
Q psy14295 224 DAAEFADIRSAMKVLQFSDEDIWD 247 (750)
Q Consensus 224 d~~~f~~l~~Al~~lG~~~~e~~~ 247 (750)
|..-|+.+--+|..+|.++.++..
T Consensus 93 ~~tvyeNVA~pL~v~G~~~~~i~~ 116 (223)
T COG2884 93 DRTVYENVALPLRVIGKPPREIRR 116 (223)
T ss_pred cchHhhhhhhhhhccCCCHHHHHH
Confidence 345577777788899988776654
No 338
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=37.59 E-value=14 Score=38.23 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 33 ~~Ge~~~l~----G~nGsGKST 50 (233)
T PRK11629 33 GEGEMMAIV----GSSGSGKST 50 (233)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 339
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=37.52 E-value=16 Score=36.86 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=11.3
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
-+|+|. |.||||||.
T Consensus 4 ~~vlL~----Gps~SGKTa 18 (181)
T PF09439_consen 4 PTVLLV----GPSGSGKTA 18 (181)
T ss_dssp -EEEEE-----STTSSHHH
T ss_pred ceEEEE----cCCCCCHHH
Confidence 357777 999999998
No 340
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=37.45 E-value=12 Score=40.08 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=12.9
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|.||||||+ -++.+...+
T Consensus 6 G~sGsGKST---l~~~L~~ll 23 (273)
T cd02026 6 GDSGCGKST---FLRRLTSLF 23 (273)
T ss_pred CCCCCCHHH---HHHHHHHhh
Confidence 999999999 554444433
No 341
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=37.44 E-value=12 Score=36.80 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=17.3
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |..|||||+ -++.+.++|
T Consensus 3 I~ie----G~~GsGKtT---~~~~L~~~l 24 (200)
T cd01672 3 IVFE----GIDGAGKTT---LIELLAERL 24 (200)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4555 999999999 777766666
No 342
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=37.40 E-value=14 Score=38.00 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 34 ~~Ge~~~i~----G~nGsGKST 51 (228)
T PRK10584 34 KRGETIALI----GESGSGKST 51 (228)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456888888 999999999
No 343
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=37.32 E-value=11 Score=36.05 Aligned_cols=18 Identities=11% Similarity=-0.156 Sum_probs=16.3
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|.+|||||+ -++.++++|
T Consensus 7 G~~~sGKTT---l~~~Li~~l 24 (140)
T PF03205_consen 7 GPKNSGKTT---LIRKLINEL 24 (140)
T ss_dssp ESTTSSHHH---HHHHHHHHH
T ss_pred CCCCCCHHH---HHHHHHHHH
Confidence 999999999 888888888
No 344
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=37.27 E-value=12 Score=36.41 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=15.0
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|.+|||||+ -+..++..|
T Consensus 6 G~~gsGKTt---l~~~l~~~l 23 (155)
T TIGR00176 6 GPKNSGKTT---LIERLVKAL 23 (155)
T ss_pred CCCCCCHHH---HHHHHHHHH
Confidence 999999999 766676666
No 345
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=37.23 E-value=12 Score=41.40 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=23.5
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHhCCc
Q psy14295 228 FADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNI 261 (750)
Q Consensus 228 f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGni 261 (750)
|+.+-=.|+.-|.+.++++.-.+-+|.+|+|.+.
T Consensus 93 ~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l 126 (338)
T COG3839 93 YENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL 126 (338)
T ss_pred HHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH
Confidence 3444455667777778888777778888877653
No 346
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.22 E-value=14 Score=37.41 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 22 ~~Ge~~~l~----G~nGsGKST 39 (211)
T cd03298 22 AQGEITAIV----GPSGSGKST 39 (211)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 347
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=37.19 E-value=13 Score=38.91 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=11.8
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
....|. |+||||||+
T Consensus 26 ~~~~Iv----G~NGsGKSt 40 (251)
T cd03273 26 QFNAIT----GLNGSGKSN 40 (251)
T ss_pred CeEEEE----CCCCCCHHH
Confidence 344555 999999999
No 348
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=37.10 E-value=17 Score=37.92 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 29 ~~Ge~~~l~----G~nGsGKST 46 (255)
T PRK11300 29 REQEIVSLI----GPNGAGKTT 46 (255)
T ss_pred cCCeEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 349
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=37.06 E-value=15 Score=37.12 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=16.5
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
-...+.+.|. |++|||||+
T Consensus 28 i~~G~~~~i~----G~nG~GKST 46 (204)
T cd03250 28 VPKGELVAIV----GPVGSGKSS 46 (204)
T ss_pred ECCCCEEEEE----CCCCCCHHH
Confidence 4567888888 999999999
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=37.05 E-value=13 Score=37.06 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.4
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
-.....+.|. |++|||||+
T Consensus 22 i~~Ge~~~l~----G~nGsGKST 40 (177)
T cd03222 22 VKEGEVIGIV----GPNGTGKTT 40 (177)
T ss_pred ECCCCEEEEE----CCCCChHHH
Confidence 3456677777 999999999
No 351
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=37.03 E-value=14 Score=43.25 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=20.1
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-+..+.+.|. |+||||||+ -.+.++.+.
T Consensus 345 i~~G~~~~iv----G~sGsGKST---L~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALV----GPSGAGKST---LLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEE----CCCCCCHHH---HHHHHhcCC
Confidence 3567888888 999999999 444444433
No 352
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=37.03 E-value=17 Score=37.39 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 46 ~~Ge~~~i~----G~nGsGKST 63 (224)
T cd03220 46 PRGERIGLI----GRNGAGKST 63 (224)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 466788888 999999999
No 353
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.89 E-value=14 Score=37.29 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=14.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
.....+.|. |++|||||+
T Consensus 25 ~~Ge~~~l~----G~nGsGKST 42 (204)
T PRK13538 25 NAGELVQIE----GPNGAGKTS 42 (204)
T ss_pred CCCcEEEEE----CCCCCCHHH
Confidence 345667777 999999999
No 354
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.87 E-value=14 Score=37.11 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~l~----G~nGsGKST 42 (200)
T PRK13540 25 PAGGLLHLK----GSNGAGKTT 42 (200)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 355
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=36.80 E-value=18 Score=38.25 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 44 ~~Ge~~~I~----G~nGsGKST 61 (267)
T PRK14237 44 EKNKITALI----GPSGSGKST 61 (267)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567888888 999999999
No 356
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.71 E-value=26 Score=38.85 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHHhhcCCCCCCCCcchhhhHHHHHHhhh-cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 23 QIKLYKDKKIGELPPHIFAIGDNGYTHMKR-FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 23 ~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~-~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..++|+-....++--|-.. -....+... .+-++.+++. |+.|+|||+ .++.+.+.+
T Consensus 7 ~~~k~rP~~~~~iig~~~~--~~~l~~~i~~~~~~~~~L~~----G~~G~GKt~---~a~~la~~l 63 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHI--TNTLLNAIENNHLAQALLFC----GPRGVGKTT---CARILARKI 63 (367)
T ss_pred HHHHHCCCcHHhcCCcHHH--HHHHHHHHHcCCCCeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3455665555555444333 234444444 3457788888 999999999 777776666
No 357
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=36.59 E-value=9.7 Score=41.40 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=12.5
Q ss_pred CeEEEeecCccccccccccc
Q psy14295 56 DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~ 75 (750)
.+-+-+. |+||||||+
T Consensus 28 Ge~vaLl----GpSGaGKsT 43 (345)
T COG1118 28 GELVALL----GPSGAGKST 43 (345)
T ss_pred CcEEEEE----CCCCCcHHH
Confidence 3455555 999999999
No 358
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=36.52 E-value=14 Score=39.03 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 36 ~~Ge~~~I~----G~NGsGKST 53 (257)
T PRK11247 36 PAGQFVAVV----GRSGCGKST 53 (257)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 359
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.45 E-value=15 Score=38.97 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 45 ~~Ge~~~i~----G~nGsGKST 62 (268)
T PRK14248 45 EKHAVTALI----GPSGCGKST 62 (268)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 467888888 999999999
No 360
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=36.35 E-value=14 Score=38.21 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.7
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|.|. |.+|||||+ -++.+...+
T Consensus 4 ~i~i~----G~~GsGKst---~~~~la~~~ 26 (217)
T TIGR00017 4 IIAID----GPSGAGKST---VAKAVAEKL 26 (217)
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 46777 999999999 776666544
No 361
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=36.33 E-value=14 Score=38.22 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=15.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 45 ~~Ge~~~i~----G~NGsGKST 62 (236)
T cd03267 45 EKGEIVGFI----GPNGAGKTT 62 (236)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 466888888 999999999
No 362
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=36.32 E-value=15 Score=38.15 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~l~----G~nGsGKST 42 (240)
T PRK09493 25 DQGEVVVII----GPSGSGKST 42 (240)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 363
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=36.23 E-value=18 Score=35.48 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKSt 43 (173)
T cd03246 26 EPGESLAII----GPSGSGKST 43 (173)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456777788 999999999
No 364
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=36.22 E-value=19 Score=38.19 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 31 ~~Ge~~~i~----G~nGsGKST 48 (269)
T PRK11831 31 PRGKITAIM----GPSGIGKTT 48 (269)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 365
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.21 E-value=15 Score=36.84 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~l~----G~nGsGKST 41 (195)
T PRK13541 24 LPSAITYIK----GANGCGKSS 41 (195)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 366
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=36.13 E-value=18 Score=36.99 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (223)
T TIGR03740 24 PKNSVYGLL----GPNGAGKST 41 (223)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 467788888 999999999
No 367
>PLN02796 D-glycerate 3-kinase
Probab=36.12 E-value=13 Score=41.22 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=15.9
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|-|+ |.||||||+ -++.+...+
T Consensus 103 IGI~----G~sGSGKST---La~~L~~lL 124 (347)
T PLN02796 103 IGIS----APQGCGKTT---LVFALVYLF 124 (347)
T ss_pred EEEE----CCCCCcHHH---HHHHHHHHh
Confidence 5566 999999999 555544444
No 368
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=36.12 E-value=15 Score=37.61 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 32 ~~Ge~~~l~----G~nGsGKST 49 (224)
T TIGR02324 32 NAGECVALS----GPSGAGKST 49 (224)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 369
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=36.02 E-value=19 Score=37.24 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~l~----G~nGsGKST 43 (242)
T TIGR03411 26 DPGELRVII----GPNGAGKTT 43 (242)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 370
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=36.00 E-value=14 Score=35.97 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=18.4
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.|++. |-+|||||+ .++.+-+.+
T Consensus 3 ~~i~~~----G~~GsGKst---~~~~la~~l 26 (171)
T PRK03731 3 QPLFLV----GARGCGKTT---VGMALAQAL 26 (171)
T ss_pred CeEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 468888 999999999 666655544
No 371
>PRK13946 shikimate kinase; Provisional
Probab=35.84 E-value=15 Score=36.67 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=19.5
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|++. |-+|||||+ .++.+-+.|
T Consensus 9 ~~~~I~l~----G~~GsGKst---i~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLV----GLMGAGKST---VGRRLATML 34 (184)
T ss_pred CCCeEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 45689999 999999999 555544443
No 372
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.80 E-value=15 Score=39.49 Aligned_cols=18 Identities=22% Similarity=0.315 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 31 ~~Ge~~~i~----G~nGsGKST 48 (286)
T PRK13646 31 EQGKYYAIV----GQTGSGKST 48 (286)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567888888 999999999
No 373
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=35.80 E-value=63 Score=30.68 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=17.6
Q ss_pred CCCCCCCcchhhhHHHHHHHH
Q psy14295 353 SGESGAGKTESTKLILQYLAA 373 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~ 373 (750)
+|++|+||+-.+++|-+++=.
T Consensus 59 HG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 59 HGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred ecCCCCcHHHHHHHHHHHHHh
Confidence 578999999999988887554
No 374
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=35.78 E-value=15 Score=37.58 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 29 ~~Ge~~~i~----G~nGsGKST 46 (228)
T cd03257 29 KKGETLGLV----GESGSGKST 46 (228)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778887 999999999
No 375
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=35.78 E-value=15 Score=36.25 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 23 ~~G~~~~l~----G~nGsGKSt 40 (180)
T cd03214 23 EAGEIVGIL----GPNGAGKST 40 (180)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 376
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=35.75 E-value=20 Score=36.22 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=14.7
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.+.|. |++|+|||.
T Consensus 11 ~g~i~~i~----G~~GsGKT~ 27 (209)
T TIGR02237 11 RGTITQIY----GPPGSGKTN 27 (209)
T ss_pred CCeEEEEE----CCCCCCHHH
Confidence 45778888 999999998
No 377
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=35.72 E-value=24 Score=35.86 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=11.1
Q ss_pred EEeecCccccccccccc
Q psy14295 59 IFLKDLFLDEIGMGSET 75 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~ 75 (750)
|.|+ |.+|||||+
T Consensus 2 i~it----G~~gsGKst 14 (196)
T PRK14732 2 IGIT----GMIGGGKST 14 (196)
T ss_pred EEEE----CCCCccHHH
Confidence 4566 999999999
No 378
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=35.71 E-value=15 Score=35.39 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=17.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....++. +++|||||. .+-.++..+
T Consensus 24 ~~~~~ll~----~~tGsGKT~---~~~~~~~~l 49 (184)
T PF04851_consen 24 EERRVLLN----APTGSGKTI---IALALILEL 49 (184)
T ss_dssp GCSEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CCCCEEEE----ECCCCCcCh---hhhhhhhcc
Confidence 34556666 899999999 655444444
No 379
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=35.69 E-value=15 Score=44.63 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=20.0
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.|.|. |+||||||+ -.|.++..+
T Consensus 489 ~~G~~iaIv----G~sGsGKST---LlklL~gl~ 515 (694)
T TIGR03375 489 RPGEKVAII----GRIGSGKST---LLKLLLGLY 515 (694)
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHhcCC
Confidence 567888888 999999999 444444433
No 380
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=35.67 E-value=56 Score=34.94 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=17.5
Q ss_pred CCCCCCcchhhhHHHHHHHHhc
Q psy14295 354 GESGAGKTESTKLILQYLAAIS 375 (750)
Q Consensus 354 ~~sgag~~~~~~~~~~~~~~~~ 375 (750)
||||+|||-.++.+++-+..-+
T Consensus 46 GESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 46 GESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred ecCCCCHHHHHHHHHcCcCCCC
Confidence 7899999999998887655433
No 381
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=35.57 E-value=20 Score=38.27 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
..++-++|+ |.||||||+
T Consensus 19 p~g~~~~vt----GvSGsGKSt 36 (261)
T cd03271 19 PLGVLTCVT----GVSGSGKSS 36 (261)
T ss_pred cCCcEEEEE----CCCCCchHH
Confidence 566778888 999999998
No 382
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=35.47 E-value=19 Score=34.33 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKSt 41 (144)
T cd03221 24 NPGDRIGLV----GRNGAGKST 41 (144)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 383
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=35.46 E-value=16 Score=38.75 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 24 ~~Ge~~~Iv----G~nGsGKST 41 (255)
T cd03236 24 REGQVLGLV----GPNGIGKST 41 (255)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 566788888 999999999
No 384
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=35.41 E-value=17 Score=46.85 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=16.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
..+|.+||+ ||+|||||+
T Consensus 80 ~~~~vvii~----g~TGSGKTT 97 (1283)
T TIGR01967 80 AENQVVIIA----GETGSGKTT 97 (1283)
T ss_pred HhCceEEEe----CCCCCCcHH
Confidence 457899999 999999998
No 385
>PRK13947 shikimate kinase; Provisional
Probab=35.41 E-value=15 Score=35.77 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=17.4
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|++. |-+|||||+ -++.+-+-|
T Consensus 3 ~I~l~----G~~GsGKst---~a~~La~~l 25 (171)
T PRK13947 3 NIVLI----GFMGTGKTT---VGKRVATTL 25 (171)
T ss_pred eEEEE----cCCCCCHHH---HHHHHHHHh
Confidence 47888 999999999 666554443
No 386
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=35.41 E-value=16 Score=39.22 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=21.1
Q ss_pred CcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 37 PHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 37 PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
|-+=++.....-.++-. .++.+++. |++|+|||.
T Consensus 15 pT~dt~r~~~ll~~l~~-~~~pvLl~----G~~GtGKT~ 48 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLS-NGRPVLLV----GPSGTGKTS 48 (272)
T ss_dssp --HHHHHHHHHHHHHHH-CTEEEEEE----SSTTSSHHH
T ss_pred CcHHHHHHHHHHHHHHH-cCCcEEEE----CCCCCchhH
Confidence 44444444443333333 46888888 999999999
No 387
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=35.39 E-value=16 Score=37.32 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (218)
T cd03290 25 PTGQLTMIV----GQVGCGKSS 42 (218)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567888888 999999999
No 388
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.36 E-value=19 Score=38.28 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=16.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 33 ~~Ge~~~l~----G~nGsGKST 50 (271)
T PRK13632 33 NEGEYVAIL----GHNGSGKST 50 (271)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567888888 999999999
No 389
>PRK14974 cell division protein FtsY; Provisional
Probab=35.26 E-value=17 Score=40.20 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=20.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..|++. |..|+|||+ +...+..++
T Consensus 139 ~~~vi~~~----G~~GvGKTT---tiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFV----GVNGTGKTT---TIAKLAYYL 164 (336)
T ss_pred CCeEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 35677777 999999999 777777766
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=35.25 E-value=17 Score=39.94 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=20.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.|.+. |.+|+|||+ ++..+..++
T Consensus 113 ~~~vi~lv----GpnGsGKTT---t~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVV----GVNGVGKTT---TIGKLAHKY 138 (318)
T ss_pred CCeEEEEE----CCCCCcHHH---HHHHHHHHH
Confidence 45677777 999999999 777776666
No 391
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.25 E-value=20 Score=35.97 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=13.9
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
..-+++-|- |+||||||+
T Consensus 34 ~~Ge~vaiV----G~SGSGKST 51 (228)
T COG4181 34 KRGETVAIV----GPSGSGKST 51 (228)
T ss_pred cCCceEEEE----cCCCCcHHh
Confidence 344666666 999999998
No 392
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.20 E-value=19 Score=35.22 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~G~~~~l~----G~nGsGKst 43 (171)
T cd03228 26 KPGEKVAIV----GPSGSGKST 43 (171)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 393
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=35.12 E-value=17 Score=36.60 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=15.0
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+|. |..|+|||. ....++..+
T Consensus 19 ~~~i~----GpPGTGKT~---~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQ----GPPGTGKTT---TLASIIAQL 41 (236)
T ss_dssp -EEEE-----STTSSHHH---HHHHHHHHH
T ss_pred CEEEE----CCCCCChHH---HHHHHHHHh
Confidence 46778 999999997 554444444
No 394
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.11 E-value=16 Score=38.21 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 28 ~~Ge~~~l~----G~nGsGKST 45 (253)
T PRK14267 28 PQNGVFALM----GPSGCGKST 45 (253)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 395
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=34.86 E-value=19 Score=35.06 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~l~----G~nGsGKST 41 (163)
T cd03216 24 RRGEVHALL----GENGAGKST 41 (163)
T ss_pred eCCCEEEEE----CCCCCCHHH
Confidence 456788787 999999999
No 396
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=34.85 E-value=16 Score=35.98 Aligned_cols=18 Identities=33% Similarity=0.326 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKSt 43 (178)
T cd03247 26 KQGEKIALL----GRSGSGKST 43 (178)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 397
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=34.80 E-value=15 Score=37.25 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 22 ~~Ge~~~i~----G~nGsGKST 39 (213)
T TIGR01277 22 ADGEIVAIM----GPSGAGKST 39 (213)
T ss_pred eCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 398
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=34.78 E-value=23 Score=40.36 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=19.2
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|++. |.+|+|||+ .++.+-..+
T Consensus 47 p~~ILLi----GppG~GKT~---lAraLA~~l 71 (441)
T TIGR00390 47 PKNILMI----GPTGVGKTE---IARRLAKLA 71 (441)
T ss_pred CceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 4678888 999999999 666555444
No 399
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=34.74 E-value=23 Score=39.01 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=28.2
Q ss_pred HHHHHHhh--hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 44 DNGYTHMK--RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 44 ~~ay~~~~--~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.+|.++. ..+-+++++++ |++|.|||. .++.+-+.+
T Consensus 7 ~~~w~~l~~~~~r~~hA~Lf~----G~~G~GK~~---la~~~a~~l 45 (325)
T PRK08699 7 QEQWRQIAEHWERRPNAWLFA----GKKGIGKTA---FARFAAQAL 45 (325)
T ss_pred HHHHHHHHHhcCCcceEEEeE----CCCCCCHHH---HHHHHHHHH
Confidence 44566665 35788999998 999999999 766666655
No 400
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.70 E-value=16 Score=37.95 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 27 ~~Ge~~~i~----G~nGsGKST 44 (241)
T PRK14250 27 EGGAIYTIV----GPSGAGKST 44 (241)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 401
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=34.57 E-value=23 Score=41.64 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=31.8
Q ss_pred HHhhcCCCCCCCCcchhh--hHHHHHHhhhcCC-CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 25 KLYKDKKIGELPPHIFAI--GDNGYTHMKRFGQ-DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 25 ~~y~~~~~~~~~PHi~~~--a~~ay~~~~~~~~-~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++|.=....++.-|-=-| .......+..... .+-.|++ |++|+|||+ +.+.+.+-+
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLt----GP~G~GKtt---tv~~La~el 69 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLT----GPSGCGKTT---TVKVLAKEL 69 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 444444444555554322 2334444443333 3445667 999999999 776666655
No 402
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.55 E-value=16 Score=37.84 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (242)
T cd03295 25 AKGEFLVLI----GPSGSGKTT 42 (242)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456778788 999999999
No 403
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.49 E-value=16 Score=38.05 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~Ge~~~i~----G~nGsGKST 45 (251)
T PRK14251 28 EEKELTALI----GPSGCGKST 45 (251)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778777 999999999
No 404
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=34.47 E-value=17 Score=37.46 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |.+|||||+
T Consensus 31 ~~Ge~~~i~----G~nGsGKST 48 (225)
T PRK10247 31 RAGEFKLIT----GPSGCGKST 48 (225)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456888888 999999999
No 405
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=34.42 E-value=23 Score=35.83 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=25.7
Q ss_pred HHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 45 NGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 45 ~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+|.+.+.. ..++.++|. |..|+|||. ..+.+.+.+
T Consensus 8 ~a~~~~l~-~~~~~~~l~----G~aGtGKT~---~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQ----GPAGTGKTT---LLKALAEAL 42 (196)
T ss_dssp HHHHHHHH-CTCSEEEEE----ESTTSTHHH---HHHHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEE----ECCCCCHHH---HHHHHHHHH
Confidence 34555544 456788888 999999999 777766666
No 406
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=34.38 E-value=29 Score=42.45 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=26.6
Q ss_pred HHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 45 NGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 45 ~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+...+...++++. |++|+|||. .++.+-+.+
T Consensus 41 ~~L~~~i~~~~~~slLL~----GPpGtGKTT---LA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILY----GPPGVGKTT---LARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 345666677777788888 999999999 666555443
No 407
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=34.35 E-value=16 Score=43.04 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=19.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
+..+.+.|. |+||||||+ -.+.++..
T Consensus 347 ~~G~~~aiv----G~sGsGKST---L~~ll~g~ 372 (547)
T PRK10522 347 KRGELLFLI----GGNGSGKST---LAMLLTGL 372 (547)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhCC
Confidence 566888888 999999999 44444443
No 408
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=34.28 E-value=17 Score=37.98 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 27 ~~Ge~~~i~----G~nGsGKST 44 (250)
T PRK14240 27 EENQVTALI----GPSGCGKST 44 (250)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 409
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.26 E-value=17 Score=38.59 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 33 ~~Ge~~~I~----G~nGsGKST 50 (269)
T PRK13648 33 PKGQWTSIV----GHNGSGKST 50 (269)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 466778888 999999999
No 410
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=34.24 E-value=17 Score=37.06 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (220)
T cd03263 26 YKGEIFGLL----GHNGAGKTT 43 (220)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 445667777 999999999
No 411
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=34.21 E-value=17 Score=37.62 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (237)
T cd03252 26 KPGEVVGIV----GRSGSGKST 43 (237)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 412
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=34.14 E-value=21 Score=36.04 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKSt 41 (200)
T cd03217 24 KKGEVHALM----GPNGSGKST 41 (200)
T ss_pred CCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 413
>PRK01184 hypothetical protein; Provisional
Probab=34.13 E-value=14 Score=36.44 Aligned_cols=16 Identities=19% Similarity=0.080 Sum_probs=13.1
Q ss_pred EEeecCccccccccccccccccc
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPT 81 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k 81 (750)
|+++ |.+|||||+ .++
T Consensus 4 i~l~----G~~GsGKsT---~a~ 19 (184)
T PRK01184 4 IGVV----GMPGSGKGE---FSK 19 (184)
T ss_pred EEEE----CCCCCCHHH---HHH
Confidence 5667 999999999 655
No 414
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=34.10 E-value=20 Score=35.18 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=13.1
Q ss_pred CeEEEeecCccccccccccc
Q psy14295 56 DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~ 75 (750)
+.-.||. |++|+|||+
T Consensus 19 ~g~~vi~----G~Ng~GKSt 34 (202)
T PF13476_consen 19 PGLNVIY----GPNGSGKST 34 (202)
T ss_dssp SEEEEEE----ESTTSSHHH
T ss_pred CCcEEEE----CCCCCCHHH
Confidence 3456777 999999999
No 415
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=34.06 E-value=17 Score=38.60 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 36 ~~Ge~~~i~----G~nGsGKST 53 (268)
T PRK10419 36 KSGETVALL----GRSGCGKST 53 (268)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 416
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=34.02 E-value=16 Score=44.45 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=20.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|.+.|. |+||||||+ -.+.++.++
T Consensus 505 ~~Ge~vaIv----G~SGsGKST---Ll~lL~gl~ 531 (711)
T TIGR00958 505 HPGEVVALV----GPSGSGKST---VAALLQNLY 531 (711)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHHhcc
Confidence 567888888 999999999 555555444
No 417
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=34.00 E-value=16 Score=44.37 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=19.8
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.|.|. |+||||||+ -.|.++..+
T Consensus 503 ~~Ge~vaIv----G~sGsGKST---LlklL~gl~ 529 (710)
T TIGR03796 503 QPGQRVALV----GGSGSGKST---IAKLVAGLY 529 (710)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhcCC
Confidence 567888888 999999999 444444433
No 418
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=33.96 E-value=17 Score=39.38 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 17 ~~Ge~~~l~----G~NGaGKST 34 (302)
T TIGR01188 17 REGEVFGFL----GPNGAGKTT 34 (302)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 455677777 999999999
No 419
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.96 E-value=17 Score=36.46 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 31 ~~Ge~~~l~----G~nGsGKST 48 (192)
T cd03232 31 KPGTLTALM----GESGAGKTT 48 (192)
T ss_pred eCCcEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 420
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=33.94 E-value=27 Score=41.63 Aligned_cols=35 Identities=6% Similarity=0.044 Sum_probs=27.3
Q ss_pred HHHHhh-hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 46 GYTHMK-RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 46 ay~~~~-~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.++. ..+.+++++++ |+.|.|||+ .++.+.+.|
T Consensus 27 ~L~~aI~~~rl~hA~Lf~----GP~GvGKTT---lA~~lAk~L 62 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFS----GPRGIGKTS---IAKIFAKAI 62 (605)
T ss_pred HHHHHHHcCCCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 334443 45678999999 999999999 888887777
No 421
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=33.94 E-value=20 Score=37.32 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 29 ~~Ge~~~i~----G~nGsGKST 46 (252)
T PRK14239 29 YPNEITALI----GPSGSGKST 46 (252)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 422
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=33.92 E-value=21 Score=35.82 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 33 ~~Ge~~~l~----G~nGsGKSt 50 (194)
T cd03213 33 KPGELTAIM----GPSGAGKST 50 (194)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 567888888 999999999
No 423
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.91 E-value=16 Score=38.66 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (271)
T PRK13638 25 SLSPVTGLV----GANGCGKST 42 (271)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 424
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.89 E-value=20 Score=37.35 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 29 ~~Ge~~~l~----G~nGsGKST 46 (252)
T PRK14255 29 NQNEITALI----GPSGCGKST 46 (252)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 425
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=33.88 E-value=17 Score=38.30 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 37 ~~Ge~~~i~----G~nGsGKST 54 (260)
T PRK10744 37 AKNQVTAFI----GPSGCGKST 54 (260)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 426
>PF13173 AAA_14: AAA domain
Probab=33.87 E-value=17 Score=33.80 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=20.0
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++.++|. |..|+|||+ ..+.+++.+
T Consensus 2 ~~~~~l~----G~R~vGKTt---ll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILT----GPRGVGKTT---LLKQLAKDL 26 (128)
T ss_pred CCeEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 4678888 999999999 776666655
No 427
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.81 E-value=22 Score=36.80 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 23 ~~Ge~~~i~----G~nG~GKSt 40 (235)
T cd03299 23 ERGDYFVIL----GPTGSGKSV 40 (235)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 457788888 999999999
No 428
>PRK06835 DNA replication protein DnaC; Validated
Probab=33.80 E-value=29 Score=38.29 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=18.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....+++. |.+|+|||. -+..+.+.+
T Consensus 182 ~~~~Lll~----G~~GtGKTh---La~aIa~~l 207 (329)
T PRK06835 182 NNENLLFY----GNTGTGKTF---LSNCIAKEL 207 (329)
T ss_pred cCCcEEEE----CCCCCcHHH---HHHHHHHHH
Confidence 34788888 999999998 444444433
No 429
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=33.78 E-value=17 Score=37.96 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (252)
T TIGR03005 24 AAGEKVALI----GPSGSGKST 41 (252)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 430
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=33.77 E-value=17 Score=36.71 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (201)
T cd03231 24 AAGEALQVT----GPNGSGKTT 41 (201)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 431
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.74 E-value=17 Score=38.03 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 31 ~~Ge~~~i~----G~nGsGKST 48 (254)
T PRK14273 31 LKNSITALI----GPSGCGKST 48 (254)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 432
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=33.67 E-value=17 Score=38.42 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 35 ~~Ge~~~i~----G~nGsGKST 52 (265)
T PRK10575 35 PAGKVTGLI----GHNGSGKST 52 (265)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 433
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.63 E-value=21 Score=34.27 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 23 ~~g~~~~i~----G~nGsGKSt 40 (157)
T cd00267 23 KAGEIVALV----GPNGSGKST 40 (157)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 455778787 999999999
No 434
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=33.56 E-value=15 Score=39.53 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=18.8
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+++. |++|+|||. .++.+-+++
T Consensus 60 ~vll~----G~pGTGKT~---lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFT----GNPGTGKTT---VALRMAQIL 82 (284)
T ss_pred eEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 46777 999999999 887777776
No 435
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=33.54 E-value=21 Score=36.38 Aligned_cols=18 Identities=17% Similarity=0.470 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 35 ~~Ge~~~i~----G~nGsGKST 52 (214)
T PRK13543 35 DAGEALLVQ----GDNGAGKTT 52 (214)
T ss_pred CCCCEEEEE----cCCCCCHHH
Confidence 456777777 999999999
No 436
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=33.52 E-value=17 Score=37.78 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 27 ~~Ge~~~i~----G~nGsGKST 44 (250)
T PRK11264 27 KPGEVVAII----GPSGSGKTT 44 (250)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 437
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=33.50 E-value=17 Score=38.04 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 27 ~~Ge~~~l~----G~nGsGKST 44 (254)
T PRK10418 27 QRGRVLALV----GGSGSGKSL 44 (254)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788787 999999999
No 438
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=33.50 E-value=33 Score=37.64 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=17.7
Q ss_pred hcCCCeEEEeecCccccccccccc
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
-.+.|-+|+.- |.+|||||.
T Consensus 76 ~~G~~~~i~~y----G~tgSGKT~ 95 (335)
T smart00129 76 LEGYNATIFAY----GQTGSGKTY 95 (335)
T ss_pred hcCCceeEEEe----CCCCCCCce
Confidence 36888899888 999999998
No 439
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=33.46 E-value=24 Score=43.74 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=20.6
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
|+++.++-...+ ..+|.+|+. |++|||||+
T Consensus 3 i~~~~~~i~~~l---~~~~~vIi~----a~TGSGKTT 32 (819)
T TIGR01970 3 IHAVLPALRDAL---AAHPQVVLE----APPGAGKST 32 (819)
T ss_pred chHHHHHHHHHH---HcCCcEEEE----CCCCCCHHH
Confidence 344444443333 357889999 999999998
No 440
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=33.44 E-value=14 Score=38.97 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHH-------HHHHHHHHHhCCceeeccc-cCCCh---HHHHHHHhhceeccCCc-EEE
Q psy14295 225 AAEFADIRSAMKVLQFSDEDIWDV-------FKLLAAVLHTGNIKYKAAV-IAVPK---QPLIDALTRKTFFAQGE-TVI 292 (750)
Q Consensus 225 ~~~f~~l~~Al~~lG~~~~e~~~I-------~~iLaaILhLGni~f~~~~-~gv~~---~~L~~~L~~~~~~~~~e-~~~ 292 (750)
....+.|...++..|-..+.+.++ .+.|+|++|==.+-.-+.. .|+|| +-|.+++..- ...|. .+-
T Consensus 108 ~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~l--k~~GatIif 185 (300)
T COG4152 108 QKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL--KEEGATIIF 185 (300)
T ss_pred HHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH--HhcCCEEEE
Confidence 344444545444444433333332 4678999986554322211 15554 5555555321 22343 355
Q ss_pred EeCCHhhHHHHHHHHH
Q psy14295 293 STLSREQSVDVRDAFV 308 (750)
Q Consensus 293 ~~~~~~~A~~~rdala 308 (750)
+....+.+..-+|.++
T Consensus 186 SsH~Me~vEeLCD~ll 201 (300)
T COG4152 186 SSHRMEHVEELCDRLL 201 (300)
T ss_pred ecchHHHHHHHhhhhh
Confidence 6667777777777654
No 441
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=33.43 E-value=17 Score=40.28 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=15.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 22 ~~Ge~~~l~----G~nGsGKST 39 (352)
T PRK11144 22 PAQGITAIF----GRSGAGKTS 39 (352)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 442
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=33.43 E-value=17 Score=39.31 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~Ge~~~l~----G~NGaGKST 45 (303)
T TIGR01288 28 ARGECFGLL----GPNGAGKST 45 (303)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 443
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=33.39 E-value=18 Score=36.33 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=14.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~i~----G~nGsGKST 41 (198)
T TIGR01189 24 NAGEALQVT----GPNGIGKTT 41 (198)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 355677777 999999999
No 444
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=33.34 E-value=23 Score=37.48 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 31 ~~Ge~~~i~----G~nGsGKST 48 (265)
T PRK10253 31 PDGHFTAII----GPNGCGKST 48 (265)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456778777 999999999
No 445
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=33.32 E-value=17 Score=37.61 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~l~----G~nGsGKST 41 (237)
T TIGR00968 24 PTGSLVALL----GPSGSGKST 41 (237)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 467888888 999999999
No 446
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.27 E-value=21 Score=37.15 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (246)
T PRK14269 26 EQNKITALI----GASGCGKST 43 (246)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778888 999999999
No 447
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=33.24 E-value=21 Score=37.91 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=21.0
Q ss_pred cchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 38 HIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 38 Hi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
++=.+-+++...+. .+..|++. |++|+|||.
T Consensus 6 ~~~~l~~~~l~~l~---~g~~vLL~----G~~GtGKT~ 36 (262)
T TIGR02640 6 AVKRVTSRALRYLK---SGYPVHLR----GPAGTGKTT 36 (262)
T ss_pred HHHHHHHHHHHHHh---cCCeEEEE----cCCCCCHHH
Confidence 33344445544443 35688888 999999999
No 448
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=33.21 E-value=36 Score=37.22 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=17.5
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.+.|.||+.- |.+|||||.
T Consensus 78 ~G~n~~i~ay----G~tgSGKTy 96 (319)
T cd01376 78 SGQNATVFAY----GSTGAGKTH 96 (319)
T ss_pred CCCceEEEEE----CCCCCCCcE
Confidence 4889999888 999999999
No 449
>PRK08116 hypothetical protein; Validated
Probab=33.17 E-value=25 Score=37.60 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=19.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..+++. |++|+|||. -+..+.+++
T Consensus 113 ~~~gl~l~----G~~GtGKTh---La~aia~~l 138 (268)
T PRK08116 113 ENVGLLLW----GSVGTGKTY---LAACIANEL 138 (268)
T ss_pred CCceEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34568888 999999999 666555555
No 450
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=33.13 E-value=17 Score=35.36 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=21.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...=.|+++ |+=|||||+ =+|-+.+.|
T Consensus 23 ~~g~Vv~L~----GdLGAGKTt---f~rgi~~~L 49 (149)
T COG0802 23 KAGDVVLLS----GDLGAGKTT---LVRGIAKGL 49 (149)
T ss_pred CCCCEEEEE----cCCcCChHH---HHHHHHHHc
Confidence 344567778 999999999 888888877
No 451
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.04 E-value=21 Score=37.45 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 36 ~~Ge~~~l~----G~nGsGKST 53 (259)
T PRK14274 36 PENEVTAII----GPSGCGKST 53 (259)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 452
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=32.89 E-value=18 Score=42.99 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=19.9
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.+.++.+.
T Consensus 364 ~~G~~~aiv----G~sGsGKST---L~~ll~g~~ 390 (574)
T PRK11160 364 KAGEKVALL----GRTGCGKST---LLQLLTRAW 390 (574)
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHhcCC
Confidence 566788888 999999999 554444444
No 453
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=32.88 E-value=18 Score=37.43 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 27 ~~Ge~~~l~----G~nGsGKST 44 (238)
T cd03249 27 PPGKTVALV----GSSGCGKST 44 (238)
T ss_pred cCCCEEEEE----eCCCCCHHH
Confidence 456788888 999999999
No 454
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=32.86 E-value=23 Score=36.77 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 25 ~~Ge~~~i~----G~nGsGKST 42 (248)
T PRK09580 25 RPGEVHAIM----GPNGSGKST 42 (248)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777787 999999999
No 455
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=32.83 E-value=73 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHH
Q psy14295 228 FADIRSAMKVLQFSDEDIWDVFKLLA 253 (750)
Q Consensus 228 f~~l~~Al~~lG~~~~e~~~I~~iLa 253 (750)
.++...||..|||++.++..+.+-+.
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~ 28 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLL 28 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 57889999999999888776655443
No 456
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=32.68 E-value=18 Score=40.26 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 26 ~~Ge~~~ll----GpsGsGKST 43 (353)
T PRK10851 26 PSGQMVALL----GPSGSGKTT 43 (353)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 457
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.68 E-value=28 Score=41.05 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=23.4
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+-++++|+. |+.|+|||+ .++.+.++|
T Consensus 35 ~rl~ha~Lf~----Gp~GvGKTT---lAr~lAk~L 62 (546)
T PRK14957 35 QKVHHAYLFT----GTRGVGKTT---LGRLLAKCL 62 (546)
T ss_pred CCCCeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3566778888 999999999 888888877
No 458
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=32.68 E-value=18 Score=37.15 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.2
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.+.|. |++|||||+
T Consensus 5 ~Ge~~~l~----G~nGsGKST 21 (223)
T TIGR03771 5 KGELLGLL----GPNGAGKTT 21 (223)
T ss_pred CCcEEEEE----CCCCCCHHH
Confidence 45667777 999999999
No 459
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=32.65 E-value=19 Score=38.14 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=20.4
Q ss_pred hhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 50 MKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 50 ~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.+. .++.++|. |-.|||||+ +.-.-+.||
T Consensus 8 ~i~~-~~~~~lV~----a~AGSGKT~---~l~~ri~~l 37 (315)
T PF00580_consen 8 IIRS-TEGPLLVN----AGAGSGKTT---TLLERIAYL 37 (315)
T ss_dssp HHHS--SSEEEEE----E-TTSSHHH---HHHHHHHHH
T ss_pred HHhC-CCCCEEEE----eCCCCCchH---HHHHHHHHh
Confidence 4444 68889998 999999999 664444454
No 460
>PRK14532 adenylate kinase; Provisional
Probab=32.61 E-value=17 Score=36.16 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=16.7
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|++. |.+|||||+ -++.+-+.+
T Consensus 3 i~~~----G~pGsGKsT---~a~~la~~~ 24 (188)
T PRK14532 3 LILF----GPPAAGKGT---QAKRLVEER 24 (188)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHc
Confidence 6676 999999999 666555544
No 461
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=32.59 E-value=18 Score=37.94 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 29 ~~Ge~~~l~----G~nGsGKST 46 (257)
T PRK10619 29 NAGDVISII----GSSGSGKST 46 (257)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 462
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=32.59 E-value=19 Score=38.31 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 48 ~~Ge~~~I~----G~nGsGKST 65 (271)
T PRK14238 48 HENEVTAII----GPSGCGKST 65 (271)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 463
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=32.48 E-value=18 Score=43.51 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.1
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+.|. |+||||||+ -.+.++..+
T Consensus 40 ~~Ge~~~lv----G~nGsGKST---Ll~~l~Gll 66 (623)
T PRK10261 40 QRGETLAIV----GESGSGKSV---TALALMRLL 66 (623)
T ss_pred CCCCEEEEE----CCCCChHHH---HHHHHHcCC
Confidence 456777777 999999999 554444443
No 464
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=32.44 E-value=19 Score=37.19 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 23 ~~Ge~~~l~----G~nGsGKST 40 (232)
T PRK10771 23 ERGERVAIL----GPSGAGKST 40 (232)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 465
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=32.42 E-value=22 Score=36.77 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 27 ~~Ge~~~l~----G~nGsGKST 44 (241)
T PRK10895 27 NSGEIVGLL----GPNGAGKTT 44 (241)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 466
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=32.41 E-value=18 Score=37.98 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~Ge~~~I~----G~NGsGKST 45 (251)
T PRK09544 28 KPGKILTLL----GPNGAGKST 45 (251)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 467
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=32.39 E-value=22 Score=37.33 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~Ge~~~i~----G~nGsGKST 45 (258)
T PRK14241 28 EPRSVTAFI----GPSGCGKST 45 (258)
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 468
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.38 E-value=19 Score=37.91 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 36 ~~Ge~~~i~----G~nGsGKST 53 (258)
T PRK14268 36 PKNSVTALI----GPSGCGKST 53 (258)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778787 999999999
No 469
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=32.33 E-value=36 Score=33.46 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=17.2
Q ss_pred HHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 46 GYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 46 ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
++..|--....--|++. |.+|+|||+
T Consensus 9 ~~~~~~~~~~~~ki~il----G~~~~GKSt 34 (190)
T cd00879 9 VLSSLGLYNKEAKILFL----GLDNAGKTT 34 (190)
T ss_pred HHHHhhcccCCCEEEEE----CCCCCCHHH
Confidence 44444334444456666 999999999
No 470
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=32.32 E-value=15 Score=37.00 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=14.7
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.++|. |.||||||. ..+.++.-+
T Consensus 40 h~li~----G~tgsGKS~---~l~~ll~~l 62 (205)
T PF01580_consen 40 HLLIA----GATGSGKST---LLRTLLLSL 62 (205)
T ss_dssp SEEEE------TTSSHHH---HHHHHHHHH
T ss_pred eEEEE----cCCCCCccH---HHHHHHHHH
Confidence 67788 999999999 544444433
No 471
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=32.21 E-value=23 Score=36.28 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 38 ~~Ge~~~i~----G~nGsGKST 55 (226)
T cd03248 38 HPGEVTALV----GPSGSGKST 55 (226)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 567888888 999999999
No 472
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=32.21 E-value=23 Score=39.03 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=16.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
..+..|+|. ||+|+||+.
T Consensus 20 ~~~~pVLI~----GE~GtGK~~ 37 (329)
T TIGR02974 20 PLDRPVLII----GERGTGKEL 37 (329)
T ss_pred CCCCCEEEE----CCCCChHHH
Confidence 567889999 999999998
No 473
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=32.16 E-value=26 Score=39.03 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-..|+|. |++|+|||. .++.+.+++
T Consensus 36 p~~~~vli~----G~~GtGKs~---~ar~~~~~l 62 (350)
T CHL00081 36 PKIGGVMIM----GDRGTGKST---TIRALVDLL 62 (350)
T ss_pred CCCCeEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 344689999 999999999 888887777
No 474
>PRK10646 ADP-binding protein; Provisional
Probab=32.13 E-value=16 Score=35.69 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.0
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-.|++. |+-|||||+ =+|.+.+.|
T Consensus 29 ~vi~L~----GdLGaGKTt---f~rgl~~~L 52 (153)
T PRK10646 29 TVIYLY----GDLGAGKTT---FSRGFLQAL 52 (153)
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 356677 999999999 777777766
No 475
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=32.09 E-value=14 Score=41.69 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=16.1
Q ss_pred hhhcCCCeEEEeecCccccccccccc
Q psy14295 50 MKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 50 ~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
|....+.+.++|. |.+|||||.
T Consensus 9 l~~~~e~~~~li~----G~~GsGKT~ 30 (386)
T PF10412_consen 9 LPKDSENRHILII----GATGSGKTQ 30 (386)
T ss_dssp E-GGGGGG-EEEE----E-TTSSHHH
T ss_pred cccchhhCcEEEE----CCCCCCHHH
Confidence 3445678899999 999999999
No 476
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=32.05 E-value=17 Score=36.13 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=18.9
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|. |-.|||||+ -++.+-+.|
T Consensus 4 ~~Ivie----G~~GsGKsT---~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIE----GIDGAGKTT---QANLLKKLL 27 (195)
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 457777 999999999 777666666
No 477
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=32.01 E-value=18 Score=36.13 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=18.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+++. |.+|.|||. -+..+.+.+
T Consensus 45 ~~~~~l~l~----G~~G~GKTh---La~ai~~~~ 71 (178)
T PF01695_consen 45 ENGENLILY----GPPGTGKTH---LAVAIANEA 71 (178)
T ss_dssp SC--EEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred ccCeEEEEE----hhHhHHHHH---HHHHHHHHh
Confidence 356889999 999999998 554444444
No 478
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.01 E-value=16 Score=37.84 Aligned_cols=117 Identities=22% Similarity=0.233 Sum_probs=55.7
Q ss_pred eecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhh--cCCChhhHHH--H
Q psy14295 173 VSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKV--LQFSDEDIWD--V 248 (750)
Q Consensus 173 v~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~--lG~~~~e~~~--I 248 (750)
|.|.|+.-..-||=-+..|.--.....-.|.. .-......+.-|+++++-|.. +|+|..+|.. |
T Consensus 93 VFQkPnPFp~SIydNVayG~r~~g~~~~~lde------------iVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 93 VFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE------------IVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred eccCCCCCCchHHHHHHHhHHhhccchHHHHH------------HHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 67777777777776666653111100000000 000011245668888887754 5666655553 3
Q ss_pred HHHHHH---HHHhCCceeeccccCCCh---HHHHHHHhhceeccCCcEEEEeCCHhhHHHHHHHHH
Q psy14295 249 FKLLAA---VLHTGNIKYKAAVIAVPK---QPLIDALTRKTFFAQGETVISTLSREQSVDVRDAFV 308 (750)
Q Consensus 249 ~~iLaa---ILhLGni~f~~~~~gv~~---~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdala 308 (750)
-+.||- ||+|..-. +++.=+.. ++|..-|-.+ -..+.+..+.+||...=|--|
T Consensus 161 ARalAv~PeVlLmDEPt--SALDPIsT~kIEeLi~eLk~~-----yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 161 ARALAVKPEVLLMDEPT--SALDPISTLKIEELITELKKK-----YTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred HHHHhcCCcEEEecCcc--cccCchhHHHHHHHHHHHHhc-----cEEEEEeCCHHHHHHHhHhhh
Confidence 444431 22222211 22223333 4444444322 124566788888877766443
No 479
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=31.90 E-value=23 Score=35.69 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.9
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 32 ~~G~~~~i~----G~nGsGKST 49 (207)
T cd03369 32 KAGEKIGIV----GRTGAGKST 49 (207)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 467888888 999999999
No 480
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=31.89 E-value=26 Score=40.12 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=31.4
Q ss_pred cchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhh
Q psy14295 38 HIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 38 Hi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
.+|...-.+...+..-.+.|.+.|. |+||+|||+ ..+.+++
T Consensus 139 ~~l~tgi~aid~l~~i~~Gq~~~i~----G~sG~GKSt---Ll~~i~~ 179 (434)
T PRK08472 139 EVFSVGVKSIDGLLTCGKGQKLGIF----AGSGVGKST---LMGMIVK 179 (434)
T ss_pred eeccchhHHhhhcceecCCCEEEEE----CCCCCCHHH---HHHHHhh
Confidence 3455566777888777899999999 999999999 5444443
No 481
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=31.85 E-value=17 Score=35.95 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=14.9
Q ss_pred EEeecCcccccccccccccccccchhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
|+|. |.+|||||+ -++.+-+
T Consensus 2 I~i~----G~pGsGKst---~a~~La~ 21 (194)
T cd01428 2 ILLL----GPPGSGKGT---QAERLAK 21 (194)
T ss_pred EEEE----CCCCCCHHH---HHHHHHH
Confidence 6676 999999999 5554443
No 482
>PRK12608 transcription termination factor Rho; Provisional
Probab=31.80 E-value=22 Score=39.95 Aligned_cols=40 Identities=8% Similarity=-0.052 Sum_probs=31.4
Q ss_pred hhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 41 AIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 41 ~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..++.-.|.--++-|-++|. |++|+|||+ -++.+.+.+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIv----G~pGtGKTT---Ll~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIV----APPRAGKTV---LLQQIAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 6777777777777888999999 999999999 555444444
No 483
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=31.77 E-value=18 Score=42.61 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+.|. |+||||||+ -.+.+..++
T Consensus 366 ~~G~~~aiv----G~sGsGKST---l~~ll~g~~ 392 (555)
T TIGR01194 366 AQGDIVFIV----GENGCGKST---LAKLFCGLY 392 (555)
T ss_pred cCCcEEEEE----CCCCCCHHH---HHHHHhCCC
Confidence 567888888 999999999 555544444
No 484
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=31.69 E-value=20 Score=36.59 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=15.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~Ge~~~i~----G~nGsGKST 45 (221)
T cd03244 28 KPGEKVGIV----GRTGSGKSS 45 (221)
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456788888 999999999
No 485
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=31.68 E-value=19 Score=37.92 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (258)
T PRK13548 26 RPGEVVAIL----GPNGAGKST 43 (258)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456778788 999999999
No 486
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=31.68 E-value=24 Score=35.06 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.8
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|.+. |+|||||-+ +|.|.
T Consensus 7 lI~vv----GPSGAGKDt-------l~~~a 25 (192)
T COG3709 7 LIAVV----GPSGAGKDT-------LLDAA 25 (192)
T ss_pred EEEEE----CCCCCChHH-------HHHHH
Confidence 36777 999999998 77777
No 487
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=31.67 E-value=19 Score=37.86 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 30 ~~Ge~~~i~----G~nGsGKST 47 (258)
T PRK11701 30 YPGEVLGIV----GESGSGKTT 47 (258)
T ss_pred eCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 488
>PRK00279 adk adenylate kinase; Reviewed
Probab=31.63 E-value=18 Score=37.01 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=17.9
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|. |.+|||||+ -++.+-+.+
T Consensus 2 ~I~v~----G~pGsGKsT---~a~~la~~~ 24 (215)
T PRK00279 2 RLILL----GPPGAGKGT---QAKFIAEKY 24 (215)
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 37777 999999999 776665555
No 489
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=31.61 E-value=17 Score=36.92 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=16.2
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.+|||||+ -++.+-+.+
T Consensus 2 I~i~----G~pGsGKsT---~a~~La~~~ 23 (210)
T TIGR01351 2 LVLL----GPPGSGKGT---QAKRIAEKY 23 (210)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHc
Confidence 6666 999999999 666554443
No 490
>PRK13695 putative NTPase; Provisional
Probab=31.55 E-value=17 Score=35.63 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=15.2
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|+ |++|+|||+ -.+.+...+
T Consensus 3 i~lt----G~~G~GKTT---ll~~i~~~l 24 (174)
T PRK13695 3 IGIT----GPPGVGKTT---LVLKIAELL 24 (174)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 5666 999999999 444443333
No 491
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=31.55 E-value=18 Score=30.63 Aligned_cols=18 Identities=17% Similarity=0.088 Sum_probs=15.3
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|..|+|||+ .+..+...|
T Consensus 6 g~~G~Gktt---~~~~l~~~l 23 (99)
T cd01983 6 GKGGVGKTT---LAANLAAAL 23 (99)
T ss_pred CCCCCCHHH---HHHHHHHHH
Confidence 888999999 777777777
No 492
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=31.50 E-value=30 Score=37.90 Aligned_cols=29 Identities=7% Similarity=0.065 Sum_probs=23.0
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+-++++++. |++|.|||. .++.+.+.+
T Consensus 32 ~~~~~~~~Ll~----G~~G~GKt~---~a~~la~~l 60 (355)
T TIGR02397 32 NGRIAHAYLFS----GPRGTGKTS---IARIFAKAL 60 (355)
T ss_pred cCCCCeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 34557788888 999999999 777777766
No 493
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=31.44 E-value=20 Score=37.86 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=22.8
Q ss_pred hhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 50 MKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 50 ~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.--++.|-++|. |++|+|||+ -++.+.+.+
T Consensus 10 ~~~i~~Gqr~~I~----G~~G~GKTT---Llr~I~n~l 40 (249)
T cd01128 10 FAPIGKGQRGLIV----APPKAGKTT---LLQSIANAI 40 (249)
T ss_pred ecccCCCCEEEEE----CCCCCCHHH---HHHHHHhcc
Confidence 3445678999998 999999999 555554444
No 494
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=31.34 E-value=19 Score=47.56 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|++-|. |+||||||+ -.++++++.
T Consensus 1192 ~~G~~vAIV----G~SGsGKST---l~~LL~r~y 1218 (1466)
T PTZ00265 1192 DSKKTTAIV----GETGSGKST---VMSLLMRFY 1218 (1466)
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHHHhC
Confidence 566888888 999999999 888888888
No 495
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=31.31 E-value=20 Score=38.10 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 31 ~~Ge~~~l~----G~nGsGKST 48 (272)
T PRK15056 31 PGGSIAALV----GVNGSGKST 48 (272)
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 496
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=31.29 E-value=31 Score=38.09 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=22.0
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..-.|-|+ |.+|||||+ -...+..++
T Consensus 53 ~~~~~~igi~----G~~GaGKST---l~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGIT----GVPGVGKST---FIEALGMHL 80 (332)
T ss_pred CCCcEEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 5667788888 999999999 666555555
No 497
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.29 E-value=24 Score=42.05 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=24.0
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..+++|++ |++|.|||+ .++.+.++|
T Consensus 35 ~~i~~a~Lf~----Gp~G~GKTt---lA~~lA~~l 62 (585)
T PRK14950 35 GRVAHAYLFT----GPRGVGKTS---TARILAKAV 62 (585)
T ss_pred CCCceEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 4567888888 999999999 888888877
No 498
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=31.28 E-value=20 Score=39.92 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=14.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 30 ~~Ge~~~ll----GpsGsGKST 47 (351)
T PRK11432 30 KQGTMVTLL----GPSGCGKTT 47 (351)
T ss_pred cCCCEEEEE----CCCCCcHHH
Confidence 345677777 999999999
No 499
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=31.26 E-value=35 Score=39.34 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=26.4
Q ss_pred HHHhhh-cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 47 YTHMKR-FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 47 y~~~~~-~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..++.+ .+-.+++++. |+.|.|||+ .++.+.+++
T Consensus 29 L~~~i~~~~i~ha~Lf~----Gp~G~GKtt---~A~~lAk~l 63 (451)
T PRK06305 29 LKNALRFNRAAHAYLFS----GIRGTGKTT---LARIFAKAL 63 (451)
T ss_pred HHHHHHcCCCceEEEEE----cCCCCCHHH---HHHHHHHHh
Confidence 334433 4557889888 999999999 888888877
No 500
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.16 E-value=18 Score=33.45 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.5
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+++ |.+|+|||. .+..+.+++
T Consensus 2 i~~~----GkgG~GKTt---~a~~la~~l 23 (116)
T cd02034 2 IAIT----GKGGVGKTT---IAALLARYL 23 (116)
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 6677 999999999 777777777
Done!