Query psy14295
Match_columns 750
No_of_seqs 298 out of 2228
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:10:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 5E-143 2E-147 1309.2 52.0 581 1-723 101-904 (1080)
2 1kk8_A Myosin heavy chain, str 100.0 9E-133 3E-137 1185.1 42.3 466 1-599 114-612 (837)
3 1w7j_A Myosin VA; motor protei 100.0 4E-130 1E-134 1157.5 43.1 459 1-601 101-584 (795)
4 4anj_A Unconventional myosin-V 100.0 5E-129 2E-133 1171.6 41.0 456 1-599 88-611 (1052)
5 1i84_S Smooth muscle myosin he 100.0 8E-127 3E-131 1188.3 43.5 466 1-598 114-613 (1184)
6 1lkx_A Myosin IE heavy chain; 100.0 6E-127 2E-131 1116.7 33.2 462 1-600 39-538 (697)
7 4db1_A Myosin-7; S1DC, cardiac 100.0 2E-125 5E-130 1113.3 38.6 468 1-601 116-613 (783)
8 2ycu_A Non muscle myosin 2C, a 100.0 5E-124 2E-128 1133.8 44.5 464 1-598 91-582 (995)
9 1w9i_A Myosin II heavy chain; 100.0 1E-124 4E-129 1102.5 37.0 461 1-601 117-604 (770)
10 2v26_A Myosin VI; calmodulin-b 100.0 1E-124 3E-129 1111.4 35.8 457 1-600 84-608 (784)
11 1g8x_A Myosin II heavy chain f 100.0 3E-122 9E-127 1117.7 52.7 445 1-584 117-582 (1010)
12 2dfs_A Myosin-5A; myosin-V, in 100.0 6.3E-47 2.2E-51 462.6 30.7 360 353-724 162-882 (1080)
13 4db1_A Myosin-7; S1DC, cardiac 100.0 6.7E-34 2.3E-38 335.3 14.7 239 353-603 177-491 (783)
14 1kk8_A Myosin heavy chain, str 100.0 1.5E-33 5.1E-38 335.2 14.9 238 353-602 175-489 (837)
15 1lkx_A Myosin IE heavy chain; 100.0 2.5E-33 8.5E-38 327.7 16.0 244 353-604 100-417 (697)
16 1w7j_A Myosin VA; motor protei 100.0 2.4E-33 8.2E-38 331.9 14.7 239 353-603 162-467 (795)
17 2v26_A Myosin VI; calmodulin-b 100.0 2.5E-33 8.5E-38 331.8 12.5 241 353-601 146-480 (784)
18 4anj_A Unconventional myosin-V 100.0 3E-33 1E-37 338.2 12.8 228 353-588 150-470 (1052)
19 1w9i_A Myosin II heavy chain; 100.0 4.7E-33 1.6E-37 327.1 14.0 238 353-603 178-484 (770)
20 1i84_S Smooth muscle myosin he 100.0 2E-32 6.8E-37 340.9 14.8 221 353-584 175-474 (1184)
21 1g8x_A Myosin II heavy chain f 100.0 2.5E-32 8.7E-37 331.3 14.6 237 353-602 178-483 (1010)
22 2ycu_A Non muscle myosin 2C, a 100.0 1.8E-32 6.2E-37 332.9 11.5 238 353-602 152-462 (995)
23 2ix7_C Myosin-5A; contractIle 99.0 6.1E-10 2.1E-14 89.3 8.1 50 659-708 4-53 (58)
24 1n2d_C IQ2 and IQ3 motifs from 98.9 1.5E-09 5E-14 83.6 6.5 44 659-702 2-47 (48)
25 2ix7_C Myosin-5A; contractIle 98.8 1.2E-08 4E-13 81.8 6.9 46 638-683 6-51 (58)
26 1n2d_C IQ2 and IQ3 motifs from 98.6 5.2E-08 1.8E-12 74.8 6.4 42 638-679 4-47 (48)
27 1wdc_A Scallop myosin; calcium 98.0 1.4E-05 4.7E-10 65.1 6.7 48 659-706 5-55 (64)
28 2bl0_A Major plasmodial myosin 97.9 1.1E-05 3.8E-10 65.5 5.2 48 659-706 3-53 (63)
29 1wdc_A Scallop myosin; calcium 97.3 0.00032 1.1E-08 56.9 5.6 49 586-634 1-52 (64)
30 2bl0_A Major plasmodial myosin 96.7 0.0015 5.1E-08 52.8 4.6 45 590-634 3-50 (63)
31 2l53_B CAM, voltage-gated sodi 91.4 0.14 4.8E-06 35.1 2.9 18 684-701 7-24 (31)
32 2kxw_B Sodium channel protein 91.2 0.1 3.5E-06 34.7 2.1 17 684-700 7-23 (27)
33 3gn4_A Myosin-VI; unconvention 90.8 2.3 7.9E-05 39.8 11.6 22 661-682 46-67 (148)
34 2l53_B CAM, voltage-gated sodi 88.7 0.27 9.4E-06 33.7 2.6 18 661-678 7-24 (31)
35 2kxw_B Sodium channel protein 88.6 0.21 7.1E-06 33.2 1.9 18 660-677 6-23 (27)
36 3gn4_A Myosin-VI; unconvention 84.2 3.3 0.00011 38.8 8.2 52 601-658 15-66 (148)
37 1jbk_A CLPB protein; beta barr 82.6 0.25 8.5E-06 46.5 -0.0 29 52-87 39-67 (195)
38 2p65_A Hypothetical protein PF 82.2 0.87 3E-05 42.6 3.7 64 15-87 4-67 (187)
39 3ec2_A DNA replication protein 81.1 0.45 1.5E-05 45.3 1.2 26 55-87 37-62 (180)
40 3c8u_A Fructokinase; YP_612366 80.3 0.45 1.5E-05 46.7 0.9 28 53-87 19-46 (208)
41 4eun_A Thermoresistant glucoki 78.1 0.55 1.9E-05 45.7 0.7 30 49-85 22-51 (200)
42 3uie_A Adenylyl-sulfate kinase 77.1 0.79 2.7E-05 44.6 1.5 28 53-87 22-49 (200)
43 1zp6_A Hypothetical protein AT 76.9 0.62 2.1E-05 44.5 0.7 22 50-75 3-24 (191)
44 1kgd_A CASK, peripheral plasma 74.9 0.73 2.5E-05 44.1 0.6 25 56-87 5-29 (180)
45 3a00_A Guanylate kinase, GMP k 74.3 0.67 2.3E-05 44.6 0.2 24 57-87 2-25 (186)
46 1ex7_A Guanylate kinase; subst 74.0 0.69 2.3E-05 45.2 0.2 13 59-75 4-16 (186)
47 2eyu_A Twitching motility prot 73.8 1.2 4.1E-05 45.7 2.0 34 46-87 16-49 (261)
48 1qhx_A CPT, protein (chloramph 72.9 0.85 2.9E-05 43.0 0.5 25 56-87 3-27 (178)
49 1lvg_A Guanylate kinase, GMP k 72.3 0.79 2.7E-05 44.7 0.1 25 56-87 4-28 (198)
50 3bos_A Putative DNA replicatio 72.0 1.5 5.2E-05 42.9 2.1 33 48-87 44-76 (242)
51 3tau_A Guanylate kinase, GMP k 71.1 1.1 3.7E-05 44.0 0.8 26 55-87 7-32 (208)
52 3tr0_A Guanylate kinase, GMP k 70.8 1.1 3.8E-05 43.2 0.8 23 56-85 7-29 (205)
53 1zuh_A Shikimate kinase; alpha 70.6 1 3.5E-05 42.2 0.5 26 55-87 6-31 (168)
54 1znw_A Guanylate kinase, GMP k 69.8 1.1 3.9E-05 43.7 0.6 27 54-87 18-44 (207)
55 2j41_A Guanylate kinase; GMP, 69.7 1.2 4.1E-05 42.9 0.8 26 55-87 5-30 (207)
56 2qor_A Guanylate kinase; phosp 69.7 1.1 3.7E-05 43.7 0.4 26 55-87 11-36 (204)
57 3cr8_A Sulfate adenylyltranfer 69.3 1.7 5.9E-05 49.6 2.0 28 53-87 366-393 (552)
58 2w58_A DNAI, primosome compone 68.8 1.5 5E-05 42.4 1.2 24 57-87 55-78 (202)
59 2kjq_A DNAA-related protein; s 68.3 1.8 6.3E-05 40.3 1.7 26 55-87 35-60 (149)
60 3vaa_A Shikimate kinase, SK; s 67.2 1.4 4.9E-05 42.6 0.7 25 56-87 25-49 (199)
61 3kb2_A SPBC2 prophage-derived 66.1 1.3 4.6E-05 41.1 0.3 23 58-87 3-25 (173)
62 1z6g_A Guanylate kinase; struc 66.1 1.3 4.6E-05 43.8 0.3 26 55-87 22-47 (218)
63 2ewv_A Twitching motility prot 66.1 2 7E-05 46.4 1.7 28 53-87 133-160 (372)
64 1s96_A Guanylate kinase, GMP k 65.5 1.6 5.3E-05 43.6 0.6 18 54-75 14-31 (219)
65 2f1r_A Molybdopterin-guanine d 65.4 0.99 3.4E-05 43.3 -0.8 24 57-87 3-26 (171)
66 1m7g_A Adenylylsulfate kinase; 65.2 2.1 7.3E-05 41.8 1.6 30 51-87 20-49 (211)
67 1knq_A Gluconate kinase; ALFA/ 64.9 1.8 6.3E-05 40.6 1.0 23 56-85 8-30 (175)
68 3t61_A Gluconokinase; PSI-biol 64.8 1.5 5E-05 42.5 0.2 24 57-87 19-42 (202)
69 3asz_A Uridine kinase; cytidin 64.5 1.7 5.8E-05 42.2 0.6 27 54-87 4-30 (211)
70 3ney_A 55 kDa erythrocyte memb 64.3 1.7 5.9E-05 42.8 0.6 26 55-87 18-43 (197)
71 1odf_A YGR205W, hypothetical 3 64.1 2.8 9.4E-05 43.7 2.2 28 53-87 28-55 (290)
72 1kht_A Adenylate kinase; phosp 64.0 1.5 5.3E-05 41.4 0.2 24 57-87 4-27 (192)
73 2gks_A Bifunctional SAT/APS ki 63.7 3.2 0.00011 47.3 2.8 48 33-87 345-396 (546)
74 3iij_A Coilin-interacting nucl 63.4 1.8 6E-05 41.0 0.5 26 55-87 10-35 (180)
75 4gp7_A Metallophosphoesterase; 62.9 2.4 8.3E-05 40.1 1.4 17 55-75 8-24 (171)
76 1htw_A HI0065; nucleotide-bind 62.3 2.2 7.4E-05 40.3 0.9 18 54-75 31-48 (158)
77 2pez_A Bifunctional 3'-phospho 62.2 2.1 7.2E-05 40.5 0.8 26 55-87 4-29 (179)
78 2vp4_A Deoxynucleoside kinase; 62.2 2.4 8.2E-05 42.2 1.3 17 55-75 19-35 (230)
79 1p9r_A General secretion pathw 62.0 2.9 9.8E-05 46.1 2.0 34 46-87 158-191 (418)
80 2rhm_A Putative kinase; P-loop 62.0 2.1 7.1E-05 40.7 0.7 25 56-87 5-29 (193)
81 1gtv_A TMK, thymidylate kinase 61.7 1.3 4.3E-05 43.1 -0.9 22 59-87 3-24 (214)
82 1gvn_B Zeta; postsegregational 61.5 2.5 8.4E-05 43.9 1.2 25 55-86 32-56 (287)
83 1njg_A DNA polymerase III subu 61.2 3.4 0.00012 39.8 2.2 28 53-87 42-69 (250)
84 1ofh_A ATP-dependent HSL prote 61.2 3.5 0.00012 42.2 2.3 27 54-87 48-74 (310)
85 3lnc_A Guanylate kinase, GMP k 61.1 2.4 8.2E-05 42.0 1.1 17 55-75 26-42 (231)
86 2bbw_A Adenylate kinase 4, AK4 60.9 2.1 7.3E-05 42.9 0.6 25 56-87 27-51 (246)
87 3tqf_A HPR(Ser) kinase; transf 60.8 2.1 7.1E-05 41.6 0.5 24 55-85 15-38 (181)
88 1rz3_A Hypothetical protein rb 60.7 2.3 7.8E-05 41.3 0.8 27 54-87 20-46 (201)
89 2gza_A Type IV secretion syste 60.6 1.9 6.4E-05 46.4 0.1 27 54-87 173-199 (361)
90 1kag_A SKI, shikimate kinase I 60.4 2 6.7E-05 40.2 0.2 22 57-85 5-26 (173)
91 1nks_A Adenylate kinase; therm 60.2 1.9 6.4E-05 40.8 0.1 23 58-87 3-25 (194)
92 2chg_A Replication factor C sm 60.0 3.3 0.00011 39.5 1.8 31 50-87 32-62 (226)
93 3jvv_A Twitching mobility prot 59.6 2.8 9.7E-05 45.1 1.4 34 46-87 114-147 (356)
94 3lw7_A Adenylate kinase relate 59.5 2 7E-05 39.6 0.2 19 58-83 3-21 (179)
95 1ye8_A Protein THEP1, hypothet 59.4 2.3 7.7E-05 40.9 0.5 22 59-87 3-24 (178)
96 3trf_A Shikimate kinase, SK; a 59.1 2.4 8.2E-05 40.1 0.6 25 56-87 5-29 (185)
97 1svm_A Large T antigen; AAA+ f 58.8 4 0.00014 44.3 2.4 45 34-85 146-191 (377)
98 2bdt_A BH3686; alpha-beta prot 58.8 2.4 8.1E-05 40.5 0.5 15 57-75 3-17 (189)
99 1l8q_A Chromosomal replication 58.7 3.4 0.00012 43.1 1.8 34 47-87 26-61 (324)
100 3tif_A Uncharacterized ABC tra 58.4 2.6 8.8E-05 42.4 0.7 18 54-75 29-46 (235)
101 3co5_A Putative two-component 58.1 2.5 8.5E-05 38.7 0.5 25 54-85 25-49 (143)
102 1sq5_A Pantothenate kinase; P- 58.0 3.9 0.00013 42.8 2.0 27 54-87 78-104 (308)
103 3n70_A Transport activator; si 57.9 2.4 8.2E-05 38.9 0.3 18 54-75 22-39 (145)
104 3aez_A Pantothenate kinase; tr 57.7 2.9 9.8E-05 44.1 1.0 28 53-87 87-114 (312)
105 1cke_A CK, MSSA, protein (cyti 57.7 2.6 8.9E-05 41.2 0.6 24 57-87 6-29 (227)
106 2p5t_B PEZT; postsegregational 57.7 3.1 0.00011 42.1 1.2 27 54-87 30-56 (253)
107 2jaq_A Deoxyguanosine kinase; 57.0 2.4 8.2E-05 40.5 0.2 23 58-87 2-24 (205)
108 1e6c_A Shikimate kinase; phosp 56.5 2.5 8.6E-05 39.4 0.2 23 58-87 4-26 (173)
109 2qby_B CDC6 homolog 3, cell di 56.2 4.1 0.00014 43.2 1.9 34 47-87 36-69 (384)
110 2qt1_A Nicotinamide riboside k 56.1 3 0.0001 40.4 0.7 24 55-85 20-43 (207)
111 1np6_A Molybdopterin-guanine d 55.9 2.6 8.8E-05 40.5 0.2 24 57-87 7-30 (174)
112 2pt5_A Shikimate kinase, SK; a 55.8 2.6 8.9E-05 39.1 0.2 23 58-87 2-24 (168)
113 2oap_1 GSPE-2, type II secreti 55.5 2.7 9.4E-05 47.5 0.4 26 55-87 259-284 (511)
114 2v9p_A Replication protein E1; 55.2 3.2 0.00011 43.7 0.8 28 53-87 123-150 (305)
115 2yvu_A Probable adenylyl-sulfa 54.7 3.5 0.00012 39.2 0.9 26 55-87 12-37 (186)
116 1m8p_A Sulfate adenylyltransfe 54.7 4.4 0.00015 46.4 2.0 47 34-87 370-420 (573)
117 1ly1_A Polynucleotide kinase; 54.7 3.1 0.00011 38.8 0.6 22 57-85 3-24 (181)
118 1zd8_A GTP:AMP phosphotransfer 54.7 2.9 9.8E-05 41.3 0.3 25 56-87 7-31 (227)
119 3cm0_A Adenylate kinase; ATP-b 54.7 3 0.0001 39.4 0.4 25 56-87 4-28 (186)
120 4e22_A Cytidylate kinase; P-lo 54.6 3.4 0.00012 41.8 0.9 26 55-87 26-51 (252)
121 4dck_A Sodium channel protein 54.6 8.2 0.00028 37.0 3.5 21 684-704 131-151 (168)
122 1fnn_A CDC6P, cell division co 54.4 4.7 0.00016 42.6 2.0 31 50-87 36-68 (389)
123 1rj9_A FTSY, signal recognitio 54.4 3.4 0.00012 43.3 0.9 26 55-87 101-126 (304)
124 3e70_C DPA, signal recognition 54.3 3.6 0.00012 43.7 1.0 27 54-87 127-153 (328)
125 2iyv_A Shikimate kinase, SK; t 54.3 2.9 9.8E-05 39.6 0.2 23 58-87 4-26 (184)
126 1via_A Shikimate kinase; struc 54.3 2.9 9.8E-05 39.4 0.2 23 58-87 6-28 (175)
127 1vec_A ATP-dependent RNA helic 54.2 7.4 0.00025 37.2 3.3 52 12-75 4-55 (206)
128 2vli_A Antibiotic resistance p 54.2 3 0.0001 39.2 0.4 24 57-87 6-29 (183)
129 1g8f_A Sulfate adenylyltransfe 54.1 2.8 9.5E-05 47.4 0.1 46 33-87 374-419 (511)
130 3te6_A Regulatory protein SIR3 53.7 3.9 0.00013 43.3 1.2 33 48-87 37-69 (318)
131 2z0h_A DTMP kinase, thymidylat 53.6 3 0.0001 39.7 0.2 22 59-87 3-24 (197)
132 1uf9_A TT1252 protein; P-loop, 53.5 3.5 0.00012 39.4 0.7 17 55-75 7-23 (203)
133 1xjc_A MOBB protein homolog; s 53.4 3 0.0001 40.0 0.2 23 58-87 6-28 (169)
134 1d2n_A N-ethylmaleimide-sensit 53.3 5 0.00017 40.7 1.9 27 53-86 61-87 (272)
135 2qby_A CDC6 homolog 1, cell di 53.3 3.3 0.00011 43.6 0.5 28 53-87 42-69 (386)
136 1iqp_A RFCS; clamp loader, ext 53.0 4 0.00014 42.1 1.1 33 48-87 38-70 (327)
137 1qf9_A UMP/CMP kinase, protein 52.9 2.9 0.0001 39.4 0.1 24 57-87 7-30 (194)
138 3b9q_A Chloroplast SRP recepto 52.8 3.8 0.00013 42.9 0.9 26 55-87 99-124 (302)
139 3llm_A ATP-dependent RNA helic 52.7 6.8 0.00023 38.8 2.8 30 39-75 62-91 (235)
140 2pt7_A CAG-ALFA; ATPase, prote 52.6 3.2 0.00011 44.0 0.4 26 55-87 170-195 (330)
141 2v1u_A Cell division control p 52.5 3.4 0.00012 43.6 0.5 28 53-87 41-68 (387)
142 1a7j_A Phosphoribulokinase; tr 52.1 3.8 0.00013 42.6 0.8 24 57-87 6-29 (290)
143 3fb4_A Adenylate kinase; psych 52.1 3.2 0.00011 40.3 0.2 22 59-87 3-24 (216)
144 4a74_A DNA repair and recombin 51.9 3.6 0.00012 40.0 0.5 18 54-75 23-40 (231)
145 3pey_A ATP-dependent RNA helic 51.8 7.7 0.00026 40.7 3.2 56 10-75 4-59 (395)
146 2cbz_A Multidrug resistance-as 51.5 3.9 0.00013 41.2 0.7 18 54-75 29-46 (237)
147 2pbr_A DTMP kinase, thymidylat 51.5 3.4 0.00011 39.1 0.2 22 59-87 3-24 (195)
148 2jeo_A Uridine-cytidine kinase 51.5 4.2 0.00014 40.7 1.0 18 54-75 23-40 (245)
149 2bwj_A Adenylate kinase 5; pho 51.3 3.2 0.00011 39.5 0.1 25 56-87 12-36 (199)
150 1lv7_A FTSH; alpha/beta domain 51.2 4.1 0.00014 40.8 0.9 25 55-86 44-68 (257)
151 2c95_A Adenylate kinase 1; tra 51.0 4 0.00014 38.7 0.7 25 56-87 9-33 (196)
152 2plr_A DTMP kinase, probable t 51.0 3.5 0.00012 39.6 0.2 24 57-87 5-28 (213)
153 2ghi_A Transport protein; mult 50.8 4 0.00014 41.7 0.7 18 54-75 44-61 (260)
154 3ake_A Cytidylate kinase; CMP 50.6 3.5 0.00012 39.5 0.2 23 58-87 4-26 (208)
155 3dl0_A Adenylate kinase; phosp 50.4 3.5 0.00012 40.2 0.1 22 59-87 3-24 (216)
156 3nh6_A ATP-binding cassette SU 50.4 3.3 0.00011 43.6 -0.0 27 54-87 78-104 (306)
157 2ff7_A Alpha-hemolysin translo 50.2 4 0.00014 41.4 0.6 18 54-75 33-50 (247)
158 2ehv_A Hypothetical protein PH 50.2 4 0.00014 40.3 0.6 18 54-75 28-45 (251)
159 1mv5_A LMRA, multidrug resista 49.9 4.4 0.00015 40.8 0.8 18 54-75 26-43 (243)
160 1um8_A ATP-dependent CLP prote 49.8 6.7 0.00023 41.9 2.3 26 55-87 71-96 (376)
161 2qz4_A Paraplegin; AAA+, SPG7, 49.8 4.5 0.00015 40.3 0.9 27 54-87 37-63 (262)
162 1zak_A Adenylate kinase; ATP:A 49.7 3.5 0.00012 40.4 0.1 24 57-87 6-29 (222)
163 1tev_A UMP-CMP kinase; ploop, 49.6 3.8 0.00013 38.7 0.2 24 57-87 4-27 (196)
164 2v54_A DTMP kinase, thymidylat 49.5 3.7 0.00013 39.3 0.2 25 56-87 4-28 (204)
165 1sxj_C Activator 1 40 kDa subu 49.4 8.2 0.00028 40.5 2.9 32 49-87 39-70 (340)
166 3nwj_A ATSK2; P loop, shikimat 49.4 3.9 0.00013 41.6 0.4 25 56-87 48-72 (250)
167 2wwf_A Thymidilate kinase, put 49.3 3.6 0.00012 39.7 0.1 25 56-87 10-34 (212)
168 2cdn_A Adenylate kinase; phosp 49.1 4.7 0.00016 38.8 0.8 27 54-87 18-44 (201)
169 1b0u_A Histidine permease; ABC 48.5 4.6 0.00016 41.3 0.7 18 54-75 30-47 (262)
170 2i3b_A HCR-ntpase, human cance 48.3 4 0.00014 39.7 0.2 23 58-87 3-25 (189)
171 3gfo_A Cobalt import ATP-bindi 48.1 4.5 0.00015 41.8 0.5 18 54-75 32-49 (275)
172 2og2_A Putative signal recogni 48.1 5 0.00017 43.2 1.0 26 55-87 156-181 (359)
173 2ixe_A Antigen peptide transpo 48.0 4.8 0.00016 41.4 0.7 18 54-75 43-60 (271)
174 2bjv_A PSP operon transcriptio 47.9 6.3 0.00021 39.7 1.6 25 55-86 28-52 (265)
175 3fmp_B ATP-dependent RNA helic 47.8 11 0.00038 41.3 3.8 32 39-75 115-146 (479)
176 3d8b_A Fidgetin-like protein 1 47.7 15 0.00053 38.9 4.8 25 54-85 115-139 (357)
177 1jr3_A DNA polymerase III subu 47.7 12 0.0004 39.4 3.8 28 53-87 35-62 (373)
178 1nij_A Hypothetical protein YJ 47.7 4.7 0.00016 42.4 0.6 15 57-75 5-19 (318)
179 4g1u_C Hemin import ATP-bindin 47.4 4.6 0.00016 41.5 0.5 18 54-75 35-52 (266)
180 2olj_A Amino acid ABC transpor 47.2 5 0.00017 41.1 0.7 18 54-75 48-65 (263)
181 3b9p_A CG5977-PA, isoform A; A 47.1 5.2 0.00018 40.9 0.8 26 55-87 53-78 (297)
182 2pcj_A ABC transporter, lipopr 46.9 4.6 0.00016 40.2 0.4 18 54-75 28-45 (224)
183 3pvs_A Replication-associated 46.8 6.6 0.00023 43.5 1.7 36 45-87 39-74 (447)
184 1nn5_A Similar to deoxythymidy 46.7 5.1 0.00017 38.6 0.7 26 55-87 8-33 (215)
185 1y63_A LMAJ004144AAA protein; 46.7 5.5 0.00019 37.9 0.9 24 56-86 10-33 (184)
186 1sxj_E Activator 1 40 kDa subu 46.7 6 0.00021 41.5 1.3 22 59-87 39-60 (354)
187 1ukz_A Uridylate kinase; trans 46.6 5.4 0.00019 38.3 0.9 25 56-87 15-39 (203)
188 2onk_A Molybdate/tungstate ABC 46.5 5 0.00017 40.5 0.6 17 54-75 23-39 (240)
189 1g6h_A High-affinity branched- 46.1 5.1 0.00017 40.8 0.6 18 54-75 31-48 (257)
190 2z4s_A Chromosomal replication 46.1 7.3 0.00025 42.9 1.9 35 46-87 119-154 (440)
191 1ixz_A ATP-dependent metallopr 45.9 5.1 0.00017 40.1 0.6 25 55-86 48-72 (254)
192 2ze6_A Isopentenyl transferase 45.8 4.7 0.00016 40.9 0.2 23 58-87 3-25 (253)
193 3fht_A ATP-dependent RNA helic 45.8 7 0.00024 41.5 1.7 57 9-75 23-79 (412)
194 2pze_A Cystic fibrosis transme 45.6 5.2 0.00018 39.9 0.6 18 54-75 32-49 (229)
195 4fcw_A Chaperone protein CLPB; 45.6 5.9 0.0002 40.6 1.0 25 56-87 47-71 (311)
196 2xau_A PRE-mRNA-splicing facto 45.5 7.3 0.00025 46.3 1.9 54 10-75 71-124 (773)
197 1vht_A Dephospho-COA kinase; s 45.4 4.5 0.00015 39.5 0.1 15 57-75 5-19 (218)
198 1knx_A Probable HPR(Ser) kinas 45.4 5.1 0.00017 42.3 0.5 23 55-84 146-168 (312)
199 1sgw_A Putative ABC transporte 45.3 4.8 0.00016 39.9 0.2 18 54-75 33-50 (214)
200 3u61_B DNA polymerase accessor 45.2 13 0.00044 38.5 3.6 56 23-87 16-72 (324)
201 3b85_A Phosphate starvation-in 45.2 6.2 0.00021 38.9 1.0 33 35-75 5-37 (208)
202 3tlx_A Adenylate kinase 2; str 45.2 8.5 0.00029 38.5 2.1 26 55-87 28-53 (243)
203 1ko7_A HPR kinase/phosphatase; 44.9 5.3 0.00018 42.2 0.5 23 56-85 144-166 (314)
204 3hws_A ATP-dependent CLP prote 44.8 5.7 0.00019 42.2 0.7 26 55-87 50-75 (363)
205 1jjv_A Dephospho-COA kinase; P 44.8 4.7 0.00016 38.9 0.1 14 58-75 4-17 (206)
206 3uk6_A RUVB-like 2; hexameric 44.7 6.9 0.00024 41.2 1.4 25 56-87 70-94 (368)
207 1e4v_A Adenylate kinase; trans 44.5 4.7 0.00016 39.3 0.1 22 59-87 3-24 (214)
208 2yz2_A Putative ABC transporte 44.3 5.9 0.0002 40.6 0.7 18 54-75 31-48 (266)
209 3syl_A Protein CBBX; photosynt 44.2 5.8 0.0002 40.7 0.7 27 54-87 65-91 (309)
210 2if2_A Dephospho-COA kinase; a 44.2 4.8 0.00016 38.7 0.0 21 58-85 3-23 (204)
211 1r6b_X CLPA protein; AAA+, N-t 44.2 13 0.00044 43.8 3.7 62 15-87 168-231 (758)
212 2d2e_A SUFC protein; ABC-ATPas 44.0 5.7 0.0002 40.2 0.6 18 54-75 27-44 (250)
213 2w0m_A SSO2452; RECA, SSPF, un 43.9 6.1 0.00021 38.3 0.7 26 55-87 22-47 (235)
214 2chq_A Replication factor C sm 43.8 7.2 0.00025 39.9 1.3 31 50-87 32-62 (319)
215 1sxj_D Activator 1 41 kDa subu 43.6 13 0.00046 38.5 3.4 34 47-87 49-82 (353)
216 2zu0_C Probable ATP-dependent 43.5 6.2 0.00021 40.4 0.7 18 54-75 44-61 (267)
217 3h4m_A Proteasome-activating n 43.5 6.4 0.00022 39.9 0.9 26 54-86 49-74 (285)
218 1q0u_A Bstdead; DEAD protein, 43.2 10 0.00035 36.8 2.3 53 11-75 4-56 (219)
219 2qmh_A HPR kinase/phosphorylas 43.2 7.2 0.00025 38.6 1.1 26 55-87 33-58 (205)
220 2yhs_A FTSY, cell division pro 43.2 6.6 0.00023 44.1 1.0 43 38-87 266-317 (503)
221 1vpl_A ABC transporter, ATP-bi 43.0 6.3 0.00022 40.2 0.7 18 54-75 39-56 (256)
222 1ji0_A ABC transporter; ATP bi 42.6 6.2 0.00021 39.7 0.6 18 54-75 30-47 (240)
223 3ber_A Probable ATP-dependent 42.6 10 0.00035 37.9 2.2 25 44-75 71-95 (249)
224 2nq2_C Hypothetical ABC transp 42.6 6.3 0.00021 40.1 0.6 18 54-75 29-46 (253)
225 3cf0_A Transitional endoplasmi 42.4 6.8 0.00023 40.6 0.8 27 54-87 47-73 (301)
226 3r20_A Cytidylate kinase; stru 42.4 5.7 0.00019 40.1 0.2 25 56-87 9-33 (233)
227 3rlf_A Maltose/maltodextrin im 42.3 6.5 0.00022 42.7 0.7 18 54-75 27-44 (381)
228 2gxq_A Heat resistant RNA depe 42.0 12 0.0004 35.7 2.5 50 14-75 4-53 (207)
229 1t6n_A Probable ATP-dependent 41.9 16 0.00056 35.2 3.5 54 10-75 13-66 (220)
230 2xb4_A Adenylate kinase; ATP-b 41.8 5.8 0.0002 39.1 0.2 22 59-87 3-24 (223)
231 2qi9_C Vitamin B12 import ATP- 41.7 6.5 0.00022 39.9 0.6 18 54-75 24-41 (249)
232 2ihy_A ABC transporter, ATP-bi 41.0 6.8 0.00023 40.5 0.6 18 54-75 45-62 (279)
233 3a4m_A L-seryl-tRNA(SEC) kinas 40.9 6.2 0.00021 40.0 0.2 24 57-87 5-28 (260)
234 4eaq_A DTMP kinase, thymidylat 40.5 7.9 0.00027 38.6 1.0 26 55-87 25-50 (229)
235 1iy2_A ATP-dependent metallopr 40.4 7.1 0.00024 39.8 0.6 24 56-86 73-96 (278)
236 1qde_A EIF4A, translation init 40.3 10 0.00036 36.7 1.8 52 12-75 15-66 (224)
237 4edh_A DTMP kinase, thymidylat 40.1 6.4 0.00022 38.9 0.2 24 57-87 7-30 (213)
238 1uj2_A Uridine-cytidine kinase 40.1 6.5 0.00022 39.5 0.2 25 56-87 22-46 (252)
239 3kta_A Chromosome segregation 39.8 8.3 0.00028 36.2 1.0 14 58-75 28-41 (182)
240 3v9p_A DTMP kinase, thymidylat 39.8 6.6 0.00023 39.4 0.3 25 56-87 25-49 (227)
241 1aky_A Adenylate kinase; ATP:A 39.7 7.7 0.00026 37.8 0.7 24 57-87 5-28 (220)
242 3sop_A Neuronal-specific septi 39.6 6.8 0.00023 40.2 0.3 9 67-75 9-17 (270)
243 1vma_A Cell division protein F 39.5 8.2 0.00028 40.5 0.9 44 37-87 77-128 (306)
244 3tqc_A Pantothenate kinase; bi 39.5 6.7 0.00023 41.5 0.2 23 58-87 94-116 (321)
245 2cvh_A DNA repair and recombin 39.2 7.8 0.00027 37.3 0.7 18 54-75 18-35 (220)
246 3fvq_A Fe(3+) IONS import ATP- 39.2 7.4 0.00025 41.9 0.5 18 54-75 28-45 (359)
247 2bbs_A Cystic fibrosis transme 39.0 7.5 0.00026 40.4 0.6 18 54-75 62-79 (290)
248 1w5s_A Origin recognition comp 39.0 10 0.00035 40.4 1.6 27 54-87 48-76 (412)
249 1g8p_A Magnesium-chelatase 38 39.0 9.9 0.00034 39.6 1.5 26 55-87 44-69 (350)
250 1hqc_A RUVB; extended AAA-ATPa 38.3 7.1 0.00024 40.3 0.2 27 54-87 36-62 (324)
251 3pfi_A Holliday junction ATP-d 38.3 11 0.00039 39.1 1.8 25 54-85 53-77 (338)
252 2pjz_A Hypothetical protein ST 38.1 8.1 0.00028 39.6 0.6 16 56-75 30-45 (263)
253 2ga8_A Hypothetical 39.9 kDa p 38.0 14 0.00046 39.8 2.4 40 41-87 6-48 (359)
254 4a82_A Cystic fibrosis transme 38.0 9.2 0.00032 43.7 1.1 27 54-87 365-391 (578)
255 3foz_A TRNA delta(2)-isopenten 37.8 8.9 0.00031 40.5 0.9 29 52-87 6-34 (316)
256 3tui_C Methionine import ATP-b 37.6 8.5 0.00029 41.5 0.7 18 54-75 52-69 (366)
257 1in4_A RUVB, holliday junction 37.6 8.6 0.00029 40.5 0.7 26 55-87 50-75 (334)
258 4tmk_A Protein (thymidylate ki 37.5 7.1 0.00024 38.7 0.1 23 58-87 5-27 (213)
259 2pl3_A Probable ATP-dependent 37.5 13 0.00046 36.4 2.1 52 12-75 26-77 (236)
260 1ojl_A Transcriptional regulat 37.5 7.7 0.00026 40.4 0.3 24 54-84 23-46 (304)
261 2yyz_A Sugar ABC transporter, 37.4 8.7 0.0003 41.3 0.7 18 54-75 27-44 (359)
262 1a5t_A Delta prime, HOLB; zinc 37.3 14 0.00047 38.9 2.3 29 52-87 20-48 (334)
263 3qf4_B Uncharacterized ABC tra 37.3 10 0.00035 43.5 1.3 27 54-87 379-405 (598)
264 2r62_A Cell division protease 37.0 5.3 0.00018 40.2 -1.0 26 55-87 43-68 (268)
265 2it1_A 362AA long hypothetical 36.8 9 0.00031 41.2 0.7 18 54-75 27-44 (362)
266 3gd7_A Fusion complex of cysti 36.7 8.5 0.00029 41.9 0.5 26 54-86 45-70 (390)
267 3fe2_A Probable ATP-dependent 36.7 23 0.00079 34.9 3.8 45 20-75 37-81 (242)
268 2yl4_A ATP-binding cassette SU 36.6 11 0.00036 43.3 1.3 18 54-75 368-385 (595)
269 3pxg_A Negative regulator of g 36.2 20 0.0007 39.6 3.6 28 53-87 198-225 (468)
270 1hv8_A Putative ATP-dependent 36.0 18 0.0006 37.5 2.9 53 12-75 7-59 (367)
271 1n0w_A DNA repair protein RAD5 35.8 9.1 0.00031 37.5 0.5 17 55-75 23-39 (243)
272 2dpy_A FLII, flagellum-specifi 35.8 9.3 0.00032 42.2 0.6 41 40-87 141-181 (438)
273 2obl_A ESCN; ATPase, hydrolase 35.8 8.2 0.00028 41.2 0.2 42 39-87 54-95 (347)
274 3be4_A Adenylate kinase; malar 35.7 7.9 0.00027 37.8 0.1 24 57-87 6-29 (217)
275 1sxj_B Activator 1 37 kDa subu 35.6 12 0.00043 38.1 1.6 32 49-87 35-66 (323)
276 3lv8_A DTMP kinase, thymidylat 35.6 7.9 0.00027 39.0 0.0 25 56-87 27-51 (236)
277 1lw7_A Transcriptional regulat 35.5 8.3 0.00028 41.1 0.2 25 56-87 170-194 (365)
278 1v43_A Sugar-binding transport 35.3 9.8 0.00033 41.1 0.7 18 54-75 35-52 (372)
279 1z47_A CYSA, putative ABC-tran 34.9 9.6 0.00033 40.9 0.6 18 54-75 39-56 (355)
280 3qf4_A ABC transporter, ATP-bi 34.8 11 0.00036 43.3 0.9 27 54-87 367-393 (587)
281 2px0_A Flagellar biosynthesis 34.6 10 0.00034 39.5 0.7 26 55-87 104-129 (296)
282 3eiq_A Eukaryotic initiation f 34.3 18 0.00063 38.2 2.7 25 44-75 68-92 (414)
283 3d31_A Sulfate/molybdate ABC t 34.2 8.3 0.00029 41.2 -0.0 18 54-75 24-41 (348)
284 1cr0_A DNA primase/helicase; R 34.2 10 0.00036 38.8 0.7 19 53-75 32-50 (296)
285 2va8_A SSO2462, SKI2-type heli 34.2 12 0.00043 43.5 1.4 52 13-75 10-61 (715)
286 3zvl_A Bifunctional polynucleo 34.2 12 0.0004 40.9 1.2 27 54-87 256-282 (416)
287 3tmk_A Thymidylate kinase; pho 34.2 8.7 0.0003 38.2 0.1 25 56-87 5-29 (216)
288 1p5z_B DCK, deoxycytidine kina 34.1 11 0.00037 38.0 0.8 26 55-87 23-48 (263)
289 1ak2_A Adenylate kinase isoenz 34.0 11 0.00038 37.2 0.9 25 56-87 16-40 (233)
290 3b60_A Lipid A export ATP-bind 34.0 10 0.00036 43.2 0.7 27 54-87 367-393 (582)
291 2zj8_A DNA helicase, putative 34.0 21 0.00072 41.6 3.4 52 13-75 3-54 (720)
292 2h92_A Cytidylate kinase; ross 34.0 9.2 0.00032 37.1 0.2 24 57-87 4-27 (219)
293 1g29_1 MALK, maltose transport 33.8 10 0.00035 40.9 0.6 17 55-75 28-44 (372)
294 1ltq_A Polynucleotide kinase; 33.8 10 0.00036 38.7 0.6 22 57-85 3-24 (301)
295 1q3t_A Cytidylate kinase; nucl 33.6 12 0.00039 37.1 0.9 24 55-85 15-38 (236)
296 3b5x_A Lipid A export ATP-bind 33.4 11 0.00037 43.1 0.7 27 54-87 367-393 (582)
297 1zu4_A FTSY; GTPase, signal re 33.4 12 0.0004 39.5 1.0 26 55-87 104-129 (320)
298 2ocp_A DGK, deoxyguanosine kin 33.4 10 0.00036 37.6 0.5 24 57-87 3-26 (241)
299 2grj_A Dephospho-COA kinase; T 33.1 9.7 0.00033 36.9 0.2 25 55-86 11-35 (192)
300 3d3q_A TRNA delta(2)-isopenten 33.1 9.7 0.00033 40.6 0.2 24 57-87 8-31 (340)
301 3t15_A Ribulose bisphosphate c 32.3 11 0.00039 38.7 0.6 27 54-87 34-60 (293)
302 1oxx_K GLCV, glucose, ABC tran 31.9 8.6 0.0003 41.2 -0.4 18 54-75 29-46 (353)
303 3sr0_A Adenylate kinase; phosp 31.7 11 0.00036 37.1 0.2 18 67-87 7-24 (206)
304 3exa_A TRNA delta(2)-isopenten 31.7 11 0.00036 40.0 0.2 24 57-87 4-27 (322)
305 3ld9_A DTMP kinase, thymidylat 31.7 13 0.00046 37.0 1.0 27 54-87 19-45 (223)
306 4dck_A Sodium channel protein 31.3 38 0.0013 32.3 4.0 21 661-681 131-151 (168)
307 1s2m_A Putative ATP-dependent 31.1 23 0.00077 37.4 2.7 53 11-75 21-73 (400)
308 3eie_A Vacuolar protein sortin 30.7 13 0.00043 38.9 0.6 26 55-87 50-75 (322)
309 2x8a_A Nuclear valosin-contain 30.3 13 0.00043 38.1 0.6 23 56-85 44-66 (274)
310 3bor_A Human initiation factor 29.8 16 0.00055 36.0 1.2 51 13-75 32-82 (237)
311 1xwi_A SKD1 protein; VPS4B, AA 29.8 14 0.00049 38.6 0.8 26 55-87 44-69 (322)
312 2yv5_A YJEQ protein; hydrolase 29.7 16 0.00055 37.9 1.2 24 230-253 266-289 (302)
313 3fdi_A Uncharacterized protein 29.6 11 0.00039 36.6 0.1 24 57-87 7-30 (201)
314 2qgz_A Helicase loader, putati 29.3 14 0.00047 38.6 0.6 25 56-87 152-176 (308)
315 2f6r_A COA synthase, bifunctio 29.2 14 0.00047 38.0 0.6 16 56-75 75-90 (281)
316 3m6a_A ATP-dependent protease 29.0 18 0.0006 41.0 1.5 26 55-87 107-132 (543)
317 3ice_A Transcription terminati 28.9 22 0.00074 38.9 2.1 44 37-87 155-198 (422)
318 3ly5_A ATP-dependent RNA helic 28.9 25 0.00086 35.3 2.5 45 20-75 62-106 (262)
319 2hf9_A Probable hydrogenase ni 28.4 21 0.00071 34.5 1.7 23 49-75 31-53 (226)
320 3crm_A TRNA delta(2)-isopenten 28.4 13 0.00043 39.4 0.1 24 57-87 6-29 (323)
321 2dr3_A UPF0273 protein PH0284; 28.3 17 0.00059 35.5 1.1 17 55-75 22-38 (247)
322 1sxj_A Activator 1 95 kDa subu 27.9 16 0.00054 41.0 0.8 26 55-87 76-101 (516)
323 4f4c_A Multidrug resistance pr 27.9 19 0.00064 45.5 1.6 27 54-87 1103-1129(1321)
324 1tue_A Replication protein E1; 27.7 14 0.00048 36.7 0.3 35 46-87 47-82 (212)
325 2npi_A Protein CLP1; CLP1-PCF1 27.7 14 0.00048 41.0 0.3 27 54-87 136-162 (460)
326 3dvk_B Voltage-dependent R-typ 27.6 27 0.00093 22.2 1.5 15 685-699 8-22 (23)
327 1pui_A ENGB, probable GTP-bind 27.4 21 0.00072 33.9 1.5 18 54-75 24-41 (210)
328 4ag6_A VIRB4 ATPase, type IV s 27.2 14 0.00049 39.6 0.3 32 230-261 126-159 (392)
329 1nlf_A Regulatory protein REPA 27.1 15 0.00052 37.2 0.5 17 55-75 29-45 (279)
330 2oxc_A Probable ATP-dependent 26.9 29 0.001 33.8 2.5 52 12-75 25-76 (230)
331 3euj_A Chromosome partition pr 26.8 17 0.00057 40.7 0.7 15 57-75 30-44 (483)
332 3k1j_A LON protease, ATP-depen 26.7 15 0.0005 42.2 0.3 25 56-87 60-84 (604)
333 2qp9_X Vacuolar protein sortin 26.7 16 0.00054 38.9 0.5 26 55-87 83-108 (355)
334 2qm8_A GTPase/ATPase; G protei 26.4 20 0.00069 37.9 1.3 37 44-87 42-79 (337)
335 3eph_A TRNA isopentenyltransfe 26.2 14 0.00049 40.3 0.1 23 58-87 4-26 (409)
336 3umf_A Adenylate kinase; rossm 25.9 19 0.00066 35.7 1.0 26 55-87 28-53 (217)
337 3vfd_A Spastin; ATPase, microt 25.9 17 0.00057 39.0 0.6 25 55-86 147-171 (389)
338 2f9l_A RAB11B, member RAS onco 25.5 20 0.00069 33.9 1.0 9 67-75 12-20 (199)
339 1oix_A RAS-related protein RAB 25.4 19 0.00066 34.0 0.8 9 67-75 36-44 (191)
340 3upu_A ATP-dependent DNA helic 25.1 26 0.00091 38.4 2.0 24 57-87 46-69 (459)
341 1tq4_A IIGP1, interferon-induc 25.1 12 0.00042 40.9 -0.7 14 58-75 71-84 (413)
342 1u0l_A Probable GTPase ENGC; p 25.0 24 0.00083 36.5 1.6 26 230-255 270-295 (301)
343 2wsm_A Hydrogenase expression/ 25.0 21 0.00072 34.3 1.0 17 55-75 29-45 (221)
344 3hu3_A Transitional endoplasmi 24.9 19 0.00065 40.3 0.7 24 54-84 236-259 (489)
345 2qag_B Septin-6, protein NEDD5 24.8 26 0.0009 38.5 1.8 18 54-75 38-57 (427)
346 1x6v_B Bifunctional 3'-phospho 24.6 23 0.00079 40.9 1.4 26 55-87 51-76 (630)
347 1g41_A Heat shock protein HSLU 24.4 31 0.0011 38.1 2.4 62 19-87 4-74 (444)
348 1ls1_A Signal recognition part 24.4 20 0.00069 37.1 0.8 26 55-87 97-122 (295)
349 3kl4_A SRP54, signal recogniti 24.4 20 0.00069 39.5 0.8 25 56-87 97-121 (433)
350 3neh_A Renal dipeptidase famil 24.4 89 0.003 32.8 5.8 43 412-455 257-299 (318)
351 3a8t_A Adenylate isopentenyltr 24.1 21 0.00072 38.0 0.9 26 55-87 39-64 (339)
352 3hdt_A Putative kinase; struct 24.0 17 0.00057 36.2 0.1 25 56-87 14-38 (223)
353 1tf7_A KAIC; homohexamer, hexa 23.7 18 0.00063 40.5 0.4 26 46-75 27-54 (525)
354 3hjn_A DTMP kinase, thymidylat 23.7 18 0.00062 35.0 0.2 20 65-87 5-24 (197)
355 1yqt_A RNAse L inhibitor; ATP- 23.3 21 0.00071 40.4 0.7 22 238-259 187-208 (538)
356 3ozx_A RNAse L inhibitor; ATP 23.3 22 0.00074 40.3 0.8 19 53-75 22-40 (538)
357 1z2a_A RAS-related protein RAB 23.1 24 0.00083 31.7 1.0 9 67-75 12-20 (168)
358 2zts_A Putative uncharacterize 23.0 26 0.00089 34.1 1.3 17 55-75 29-45 (251)
359 2ffh_A Protein (FFH); SRP54, s 22.9 23 0.00078 38.9 0.9 26 55-87 97-122 (425)
360 1pzn_A RAD51, DNA repair and r 22.9 21 0.00071 38.0 0.5 17 55-75 130-146 (349)
361 2qen_A Walker-type ATPase; unk 22.7 28 0.00095 35.8 1.5 15 57-75 32-46 (350)
362 3dkp_A Probable ATP-dependent 22.6 43 0.0015 32.8 2.8 30 39-75 52-81 (245)
363 3j16_B RLI1P; ribosome recycli 22.6 22 0.00075 41.0 0.7 18 54-75 101-118 (608)
364 1t9h_A YLOQ, probable GTPase E 22.4 18 0.00063 37.9 -0.0 27 230-256 275-301 (307)
365 4f4c_A Multidrug resistance pr 22.3 21 0.00073 44.9 0.6 27 54-87 442-468 (1321)
366 3pxi_A Negative regulator of g 22.3 33 0.0011 40.3 2.2 28 53-87 198-225 (758)
367 3b6e_A Interferon-induced heli 22.3 20 0.00068 34.1 0.2 39 34-84 31-69 (216)
368 2v6i_A RNA helicase; membrane, 22.1 33 0.0011 37.4 2.0 16 56-75 2-17 (431)
369 2zej_A Dardarin, leucine-rich 22.1 24 0.00083 32.9 0.8 13 59-75 5-17 (184)
370 3ch4_B Pmkase, phosphomevalona 22.0 19 0.00066 35.4 0.1 23 58-87 13-35 (202)
371 3t1o_A Gliding protein MGLA; G 21.9 26 0.0009 32.4 1.0 14 67-87 21-34 (198)
372 2fz4_A DNA repair protein RAD2 21.9 25 0.00086 34.9 0.9 26 43-75 98-123 (237)
373 3iuy_A Probable ATP-dependent 21.8 41 0.0014 32.5 2.4 27 42-75 46-72 (228)
374 2rcn_A Probable GTPase ENGC; Y 21.8 29 0.001 37.1 1.4 17 55-75 214-230 (358)
375 3ux8_A Excinuclease ABC, A sub 21.7 25 0.00085 40.8 0.9 23 54-83 346-368 (670)
376 1j8m_F SRP54, signal recogniti 21.6 29 0.00099 36.0 1.3 25 56-87 98-122 (297)
377 1u8z_A RAS-related protein RAL 21.6 27 0.00093 31.2 1.0 13 59-75 7-19 (168)
378 3qf7_A RAD50; ABC-ATPase, ATPa 21.2 25 0.00086 37.5 0.8 14 58-75 25-38 (365)
379 2ged_A SR-beta, signal recogni 21.2 28 0.00095 32.4 1.0 14 58-75 50-63 (193)
380 2z83_A Helicase/nucleoside tri 20.8 37 0.0013 37.3 2.1 17 55-75 20-36 (459)
381 3g5u_A MCG1178, multidrug resi 20.8 25 0.00086 44.1 0.8 27 54-87 414-440 (1284)
382 1e69_A Chromosome segregation 20.7 31 0.0011 35.9 1.4 14 58-75 26-39 (322)
383 2axn_A 6-phosphofructo-2-kinas 20.7 27 0.00094 39.2 1.0 25 56-87 35-59 (520)
384 1fuu_A Yeast initiation factor 20.6 33 0.0011 35.9 1.5 52 12-75 22-73 (394)
385 1c1y_A RAS-related protein RAP 20.6 29 0.001 31.1 1.0 13 59-75 6-18 (167)
386 3auy_A DNA double-strand break 20.5 25 0.00086 37.4 0.6 15 57-75 26-40 (371)
387 3dm5_A SRP54, signal recogniti 20.5 28 0.00096 38.5 1.0 25 56-87 100-124 (443)
388 2z0m_A 337AA long hypothetical 20.4 52 0.0018 33.4 3.0 25 44-75 22-46 (337)
389 1ky3_A GTP-binding protein YPT 20.4 30 0.001 31.5 1.0 14 58-75 10-23 (182)
390 2fna_A Conserved hypothetical 20.3 37 0.0013 34.9 1.8 15 57-75 31-45 (357)
391 1z08_A RAS-related protein RAB 20.3 30 0.001 31.2 1.0 9 67-75 13-21 (170)
392 4hlc_A DTMP kinase, thymidylat 20.3 23 0.00079 34.5 0.2 22 59-87 5-26 (205)
393 2zan_A Vacuolar protein sortin 20.2 27 0.00091 38.4 0.7 26 55-87 166-191 (444)
394 2b8t_A Thymidine kinase; deoxy 20.1 33 0.0011 34.1 1.4 16 56-75 12-27 (223)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=4.9e-143 Score=1309.19 Aligned_cols=581 Identities=39% Similarity=0.659 Sum_probs=540.9
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+++|||+++++..|+++..+++|||||+||+.||++|.++++||||||| ||||||||+ ++
T Consensus 101 Ty~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiis----GESGAGKTe---~~ 173 (1080)
T 2dfs_A 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVS----GESGAGKTV---SA 173 (1080)
T ss_dssp EEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEE----CSTTSSHHH---HH
T ss_pred hccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEc----CCCCCCccc---hH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++..+ ...++++|+++||||||||||||++||||||||||++|+||.+|.|+||
T Consensus 174 K~i~~yl-------a~~~~~~~---------~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga 237 (1080)
T 2dfs_A 174 KYAMRYF-------ATVSGSAS---------EANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGA 237 (1080)
T ss_dssp HHHHHHH-------HHTTTCCT---------TTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEE
T ss_pred HHHHHHH-------HhhccCCC---------ccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeee
Confidence 9999999 76665432 2469999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|.+|||||||||.|++||||||||||||+|++++++..|+|.++.+|+||++++|..+++.||.++|..++.||++|||
T Consensus 238 ~i~~yLLEKsRVv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~ 317 (1080)
T 2dfs_A 238 NMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGI 317 (1080)
T ss_dssp EEEEECCCCGGGTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTC
T ss_pred cceeEeecCceeeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSV 301 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~ 301 (750)
+++++.+||+|||||||||||+|.. .++||++++|.++||++++.++||.+++|+++++|.
T Consensus 318 ~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~ 397 (1080)
T 2dfs_A 318 SDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAI 397 (1080)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEETTTEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCceEEecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHH
Confidence 9999999999999999999999952 245999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchh
Q psy14295 302 DVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWI 381 (750)
Q Consensus 302 ~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~ 381 (750)
++||||||+||++||+|||.+||.+|..+. ....+||||||||||+|..||
T Consensus 398 ~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~GFE~f~~Ns---------------------------- 448 (1080)
T 2dfs_A 398 NARDALAKHIYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINS---------------------------- 448 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CCCEEEEEEEECCCCCCSSBC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCceEEeeccCCccccCcCC----------------------------
Confidence 999999999999999999999999997653 356799999999999999988
Q ss_pred HHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHH
Q psy14295 382 EQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAA 461 (750)
Q Consensus 382 ~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~ 461 (750)
T Consensus 449 -------------------------------------------------------------------------------- 448 (1080)
T 2dfs_A 449 -------------------------------------------------------------------------------- 448 (1080)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCCCc
Q psy14295 462 VLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGT 541 (750)
Q Consensus 462 ~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~ 541 (750)
|||||||||||+||+||++|+|+.||++|.+|||+|..++|.||++|||||+++ .||+++|||||.+|+++
T Consensus 449 --------FEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~t 519 (1080)
T 2dfs_A 449 --------FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519 (1080)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCC
T ss_pred --------HHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999977 99999999999999999
Q ss_pred hhhHHHHHHHHh-CCCCCccCCCCCCCCCeeeecccceEEeecc------------------------------------
Q psy14295 542 DHTLLAKLHKTH-GLHRNYLKPKSDINTSFGLNHFAGVVFYDTR------------------------------------ 584 (750)
Q Consensus 542 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~------------------------------------ 584 (750)
|++|++|+...| +.|+.|.+|+.. ...|+|.||||.|.|+++
T Consensus 520 D~~f~~kl~~~~~~~~~~f~~p~~~-~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~ 598 (1080)
T 2dfs_A 520 DDTWAQKLYNTHLNKCALFEKPRLS-NKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEK 598 (1080)
T ss_dssp HHHHHHHHHHHHBTTBSSEECCTTC-SSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC----
T ss_pred hHHHHHHHHHHhhcCCCCccCCCCC-CCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhccccc
Confidence 999999999998 999999998864 679999999999999832
Q ss_pred --------------------------------------------------------------------------------
Q psy14295 585 -------------------------------------------------------------------------------- 584 (750)
Q Consensus 585 -------------------------------------------------------------------------------- 584 (750)
T Consensus 599 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V 678 (1080)
T 2dfs_A 599 AISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRA 678 (1080)
T ss_dssp ---------------------------------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14295 585 -------------------------------------------------------------------------------- 584 (750)
Q Consensus 585 -------------------------------------------------------------------------------- 584 (750)
T Consensus 679 ~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~ 758 (1080)
T 2dfs_A 679 VQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAY 758 (1080)
T ss_dssp HHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHH
T ss_pred HHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCChHHHHHHHHHHhcCChhhheeccccchhccchhhH
Confidence
Q ss_pred ---cchhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHhh
Q psy14295 585 ---ERDRVLTRNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRMR--VGYMRLQALIRSRLLSHRFRHL 659 (750)
Q Consensus 585 ---~R~~~l~~a~v~IQ~~~Rg~~~Rr~~~~~r~aai~IQs~~Rg~~~R~~~~~~r--~a~~~IQs~~R~~~~R~~~~~~ 659 (750)
.|+..+..+++.||+.||||+.|++|.+++.+++.||++|||+.+|+.+..++ .+++.||++|||+.+|+.|.++
T Consensus 759 LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~l 838 (1080)
T 2dfs_A 759 LEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCM 838 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHH
Confidence 22334556888999999999999999999999999999999999999887664 5899999999999999999999
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 660 RGHIVGLQARARGYLTRRMYAQKM--WAIVKIQAHVRRMIAQRHYQKLQFEYQSQIEALKLKRKEE 723 (750)
Q Consensus 660 ~~aai~IQa~~Rg~laRr~y~~~r--~Aai~IQs~~R~~~aRr~y~~lk~~~~~~~~~~r~~~~~e 723 (750)
+.+++.||++|||+++|+.|..++ .||++||++||++++|+.|++++.++..+|..||.+.+++
T Consensus 839 r~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr 904 (1080)
T 2dfs_A 839 RDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999998776 4899999999999999999999999999999998876554
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=9.2e-133 Score=1185.11 Aligned_cols=466 Identities=38% Similarity=0.631 Sum_probs=423.8
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|||+++++..|+++...++|||||+||+.||++|+++++||||||| ||||||||| ++
T Consensus 114 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiS----GESGAGKTe---~t 186 (837)
T 1kk8_A 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLIT----GESGAGKTE---NT 186 (837)
T ss_dssp EEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEE----CSTTSSHHH---HH
T ss_pred eeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEe----CCCCCCchh---hH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccc-cccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFI-RCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~-~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
|++|+|| +.+++...... ........+++++|+++||||||||||||++||||||||||++|+||.+|.|+|
T Consensus 187 K~i~~yl-------a~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~G 259 (837)
T 1kk8_A 187 KKVIMYL-------AKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAG 259 (837)
T ss_dssp HHHHHHH-------HHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEE
T ss_pred HHHHHHH-------HHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECCCCCEee
Confidence 9999999 66665432100 000001357999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccC-CCcccCccccCCCCcccCCcchHHHHHHHHHHHhhc
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALEL-TDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVL 238 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L-~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~l 238 (750)
|+|++|||||||||.|++||||||||||||+|+++++++.|+| .++++|+||+++. ..+++.||.++|.+++.||++|
T Consensus 260 a~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~-~~~~~~dD~~~f~~~~~Am~~l 338 (837)
T 1kk8_A 260 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGC-LTVDNIDDVEEFKLCDEAFDIL 338 (837)
T ss_dssp EEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSC-SCBTTBCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCC-cccCCcChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 7899999999876 6778999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhh
Q psy14295 239 QFSDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQ 299 (750)
Q Consensus 239 G~~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~ 299 (750)
||+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.+++|.++++++++|
T Consensus 339 Gfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~q 418 (837)
T 1kk8_A 339 GFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 418 (837)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHH
T ss_pred CcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceEEeCCCHHH
Confidence 999999999999999999999999963 2459999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcc
Q psy14295 300 SVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHS 379 (750)
Q Consensus 300 A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~ 379 (750)
|.++||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.||
T Consensus 419 A~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~Ns-------------------------- 471 (837)
T 1kk8_A 419 VVNSVGALAKSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFDFNS-------------------------- 471 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCSSBC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCcceEEEEecCCcccccccc--------------------------
Confidence 9999999999999999999999999999743 3456799999999999999998
Q ss_pred hhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHH
Q psy14295 380 WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLL 459 (750)
Q Consensus 380 ~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~ 459 (750)
T Consensus 472 -------------------------------------------------------------------------------- 471 (837)
T 1kk8_A 472 -------------------------------------------------------------------------------- 471 (837)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHhhchhhhhcchhhccCC
Q psy14295 460 AAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQLNIMALIDEESKFP 538 (750)
Q Consensus 460 ~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~~~~gi~~~l~~~~~~~ 538 (750)
|||||||||||+||+||++++|+.||++|.+|||+|..++| .||++|||||++ |.||+++|||||.+|
T Consensus 472 ----------FEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p 540 (837)
T 1kk8_A 472 ----------FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFP 540 (837)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCT
T ss_pred ----------HHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999 699999999996 999999999999999
Q ss_pred CCchhhHHHHHH-HHhCCCCCccCCCCC-----CCCCeeeecccceEEeecc-----cchhhhhhHHHhhhh
Q psy14295 539 KGTDHTLLAKLH-KTHGLHRNYLKPKSD-----INTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQK 599 (750)
Q Consensus 539 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~ 599 (750)
+++|++|++|+. ..++.|+.|.+|+.. ....|+|.||||.|.|+++ |||.+..+.+.+++.
T Consensus 541 ~~tD~tf~~kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~ 612 (837)
T 1kk8_A 541 KADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGA 612 (837)
T ss_dssp TCCHHHHHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHT
T ss_pred CCChHHHHHHHHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHh
Confidence 999999999965 566889999988754 3679999999999999999 666665555555544
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=3.7e-130 Score=1157.46 Aligned_cols=459 Identities=42% Similarity=0.711 Sum_probs=433.7
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|||++++++.|+++...++|||||+||+.||++|+++++||||||| ||||||||| ++
T Consensus 101 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiis----GESGAGKTe---~t 173 (795)
T 1w7j_A 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVS----GESGAGKTV---SA 173 (795)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEE----CSTTSSHHH---HH
T ss_pred hccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEe----CCCCCCcch---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++... ...++++|+++||||||||||||++||||||||||++|+||.+|.|+||
T Consensus 174 K~i~~yl-------a~~~~~~~---------~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga 237 (795)
T 1w7j_A 174 KYAMRYF-------ATVSGSAS---------EANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGA 237 (795)
T ss_dssp HHHHHHH-------HHHTCCSS---------SSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEE
T ss_pred HHHHHHH-------HhhcCCCC---------ccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeee
Confidence 9999999 76665432 2469999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|++|||||||||.|++||||||||||||+|+++++++.|+|.++++|+||+++++..+++.||.++|.+++.||++|||
T Consensus 238 ~I~~YLLEKSRVv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~ 317 (795)
T 1w7j_A 238 NMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGI 317 (795)
T ss_dssp EEEEECCCGGGGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTC
T ss_pred eceEEecccceEeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSV 301 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~ 301 (750)
+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.++||.+++|++++||.
T Consensus 318 s~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~ 397 (795)
T 1w7j_A 318 SDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAI 397 (795)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCEEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCceEeecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHH
Confidence 9999999999999999999999952 246999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchh
Q psy14295 302 DVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWI 381 (750)
Q Consensus 302 ~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~ 381 (750)
++||||||+||++||+|||.+||.+|..+. ....+||||||||||+|+.||
T Consensus 398 ~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~Ns---------------------------- 448 (795)
T 1w7j_A 398 NARDALAKHIYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINS---------------------------- 448 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CCSEEEEEEECCCCCCCSSCC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-cccceEEeeccCcccccCcCC----------------------------
Confidence 999999999999999999999999997653 356799999999999999998
Q ss_pred HHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHH
Q psy14295 382 EQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAA 461 (750)
Q Consensus 382 ~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~ 461 (750)
T Consensus 449 -------------------------------------------------------------------------------- 448 (795)
T 1w7j_A 449 -------------------------------------------------------------------------------- 448 (795)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcchhhccCCCCc
Q psy14295 462 VLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGT 541 (750)
Q Consensus 462 ~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~ 541 (750)
|||||||||||+||+||++++|+.||++|.+|||+|..++|.||++|||||+++ .||+++|||||.+|+++
T Consensus 449 --------FEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~t 519 (795)
T 1w7j_A 449 --------FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519 (795)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCC
T ss_pred --------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 99999999999999999
Q ss_pred hhhHHHHHHHHh-CCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhhh
Q psy14295 542 DHTLLAKLHKTH-GLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKNI 601 (750)
Q Consensus 542 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~~ 601 (750)
|++|++|+...+ +.|+.|.+|+.. +..|+|.||||.|.|+++ |||.+..+.+.++|..-
T Consensus 520 D~~f~~kl~~~~~~~~~~f~~p~~~-~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~ 584 (795)
T 1w7j_A 520 DDTWAQKLYNTHLNKCALFEKPRLS-NKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSK 584 (795)
T ss_dssp HHHHHHHHHHHHTTTCTTEECCTTC-SSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCS
T ss_pred hHHHHHHHHHHhhccCCccccCCCC-CCceEEEecceEEEEechhHHhhccccccHHHHHHHHhcc
Confidence 999999999998 999999998864 679999999999999999 67766666555555543
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=5.2e-129 Score=1171.57 Aligned_cols=456 Identities=40% Similarity=0.685 Sum_probs=418.0
Q ss_pred CcccCcEEEEcCCCCCC-CCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILP-IYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+|++|||||||+.+| ||++++++.|+++...++|||||+||+.||++|+++++||||||| ||||||||| +
T Consensus 88 Ty~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiS----GESGAGKTe---s 160 (1052)
T 4anj_A 88 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVS----GESGAGKTE---N 160 (1052)
T ss_dssp EEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEE----CSTTSSHHH---H
T ss_pred EeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEe----cCCCCCHHH---H
Confidence 89999999999999998 999999999999999999999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
+|++|+|| +.+++.. .+++++|+++||||||||||||++||||||||||++|+||..|.|+|
T Consensus 161 tK~im~yL-------a~~~~~~-----------~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~G 222 (1052)
T 4anj_A 161 TKFVLRYL-------TESYGTG-----------QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVG 222 (1052)
T ss_dssp HHHHHHHH-------HHHHCC--------------CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEE
T ss_pred HHHHHHHH-------HHhcCCC-----------ccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEE
Confidence 99999999 6665543 24899999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCC------------------------
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGG------------------------ 215 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~------------------------ 215 (750)
|+|++|||||||||.|++||||||||||||+|++++++++|+|.++++|+||+++.
T Consensus 223 a~I~~YLLEKSRVv~q~~gERNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1052)
T 4anj_A 223 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLK 302 (1052)
T ss_dssp EEEEEECCCSGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHH
T ss_pred EEEeccccccCceeecCCCCCCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhcc
Confidence 99999999999999999999999999999999999999999999999999998753
Q ss_pred --CcccCCcchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhCCceeec----------------------cccCCC
Q psy14295 216 --SITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNIKYKA----------------------AVIAVP 271 (750)
Q Consensus 216 --~~~~~~~~d~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGni~f~~----------------------~~~gv~ 271 (750)
+..+++.||.++|.+++.||++|||+++|+.+||+|||||||||||+|.. .++||+
T Consensus 303 ~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~ 382 (1052)
T 4anj_A 303 AGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLD 382 (1052)
T ss_dssp HCCBCCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCC
T ss_pred CCCccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCC
Confidence 44567889999999999999999999999999999999999999999952 246999
Q ss_pred hHHHHHHHhhceec-----cCCcEEEEeCCHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeeccccc
Q psy14295 272 KQPLIDALTRKTFF-----AQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGF 346 (750)
Q Consensus 272 ~~~L~~~L~~~~~~-----~~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gf 346 (750)
+++|.++||++++. ++||.++++++++||.++||||||+||++||+|||++||.+|... ....+|||||||||
T Consensus 383 ~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GF 460 (1052)
T 4anj_A 383 QDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGF 460 (1052)
T ss_dssp HHHHHHHHHEEC-------------CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCC
T ss_pred HHHHHHHHhhceeeecccccCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccceEEEEecCCC
Confidence 99999999988764 578999999999999999999999999999999999999999654 35679999999999
Q ss_pred ccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccc
Q psy14295 347 ENFNTNSGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITC 426 (750)
Q Consensus 347 e~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~ 426 (750)
|+|..||
T Consensus 461 E~f~~Ns------------------------------------------------------------------------- 467 (1052)
T 4anj_A 461 EYFEHNS------------------------------------------------------------------------- 467 (1052)
T ss_dssp CCCSSCC-------------------------------------------------------------------------
T ss_pred cccccCc-------------------------------------------------------------------------
Confidence 9999998
Q ss_pred cCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccc
Q psy14295 427 EGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQ 506 (750)
Q Consensus 427 ~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~ 506 (750)
|||||||||||+||+||++++|+.||++|.+|||+|.
T Consensus 468 -------------------------------------------FEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~ 504 (1052)
T 4anj_A 468 -------------------------------------------FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVN 504 (1052)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCC
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCC---------CCCCeeeecccc
Q psy14295 507 HIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSD---------INTSFGLNHFAG 577 (750)
Q Consensus 507 ~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~F~I~H~aG 577 (750)
.++|.||++|||||+++|.||+++|||||.+|+++|++|++++...++.|+.|..|+.+ .+..|+|.||||
T Consensus 505 ~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG 584 (1052)
T 4anj_A 505 EVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAG 584 (1052)
T ss_dssp CCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTE
T ss_pred cCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCCcccccccccccCCCCCeEEEcCCc
Confidence 99999999999999999999999999999999999999999999999999998776543 235799999999
Q ss_pred eEEeecc-----cchhhhhhHHHhhhh
Q psy14295 578 VVFYDTR-----ERDRVLTRNILVLQK 599 (750)
Q Consensus 578 ~V~Yd~~-----~R~~~l~~a~v~IQ~ 599 (750)
.|.|+++ |||.+..+.+.+++.
T Consensus 585 ~V~Y~~~gfleKNrD~l~~~~~~ll~~ 611 (1052)
T 4anj_A 585 AVCYETTQFVEKNNDALHMSLESLICE 611 (1052)
T ss_dssp EEEEECTTHHHHHBCCCCHHHHHHHHT
T ss_pred cEEEecCChhhhccccccHHHHHHHHh
Confidence 9999999 677666555555544
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=7.8e-127 Score=1188.33 Aligned_cols=466 Identities=38% Similarity=0.636 Sum_probs=425.7
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+++|||+++++..|+++...++|||||+||+.||++|+++++||||||| ||||||||+ ++
T Consensus 114 T~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~is----GeSGaGKTe---~~ 186 (1184)
T 1i84_S 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCT----GESGAGKTE---NT 186 (1184)
T ss_dssp EEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECC----CSTTSSTTH---HH
T ss_pred EecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEe----cCCCCCccH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCccccc-----ccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCC
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIR-----CIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG 155 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~-----~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g 155 (750)
|++|+|| +.+++....... ........|+++|+++||||||||||||++||||||||||++|+||.+|
T Consensus 187 k~~~~yl-------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g 259 (1184)
T 1i84_S 187 KKVIQYL-------AVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTG 259 (1184)
T ss_dssp HHHHHHH-------HHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSS
T ss_pred HHHHHHH-------HHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCC
Confidence 9999999 666553211000 0000135799999999999999999999999999999999999999999
Q ss_pred ceeeeeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHH
Q psy14295 156 VIEGAKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAM 235 (750)
Q Consensus 156 ~l~ga~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al 235 (750)
.|+||+|.+|||||||||.|++||||||||||||+|++++++..|+|.++.+|+||+++. ..++++||..+|..++.||
T Consensus 260 ~i~ga~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~~-~~~~~~~d~~~f~~~~~a~ 338 (1184)
T 1i84_S 260 YIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAM 338 (1184)
T ss_dssp CEEEEEEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTSS-CCCTTCCHHHHHHHHHHHH
T ss_pred CEeeeEEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCCC-cCCCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 4778999999999999999
Q ss_pred hhcCCChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCC
Q psy14295 236 KVLQFSDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLS 296 (750)
Q Consensus 236 ~~lG~~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~ 296 (750)
++|||+++++.+||+|||||||||||+|.. .++||++++|.++||++++.+++|.++++++
T Consensus 339 ~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~ 418 (1184)
T 1i84_S 339 TIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQT 418 (1184)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCC
T ss_pred HhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCC
Confidence 999999999999999999999999999963 2469999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcC
Q psy14295 297 REQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISG 376 (750)
Q Consensus 297 ~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~ 376 (750)
+++|.++||||||+||++||+|||.+||.+|.+.......+||||||||||+|..||
T Consensus 419 ~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~Ns----------------------- 475 (1184)
T 1i84_S 419 KEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINS----------------------- 475 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcch-----------------------
Confidence 999999999999999999999999999999976433456899999999999999998
Q ss_pred CcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHH
Q psy14295 377 KHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVF 456 (750)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~ 456 (750)
T Consensus 476 -------------------------------------------------------------------------------- 475 (1184)
T 1i84_S 476 -------------------------------------------------------------------------------- 475 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHhhch---hhhhcch
Q psy14295 457 KLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQL---NIMALID 532 (750)
Q Consensus 457 ~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~~~~---gi~~~l~ 532 (750)
|||||||||||+||+||++|+|..||++|..|||+|..++| .||++|||||++ |. ||+++||
T Consensus 476 -------------feQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~-~~~~~Gil~lLd 541 (1184)
T 1i84_S 476 -------------FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER-PTNPPGVLALLD 541 (1184)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSC-CSSSCCHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhC-CCCCCCchhhhh
Confidence 99999999999999999999999999999999999999999 599999999985 55 9999999
Q ss_pred hhccCCCCchhhHHHHHHHHhCCCCCccCCCCC-CCCCeeeecccceEEeecc-----cchhhhhhHHHhhh
Q psy14295 533 EESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSD-INTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQ 598 (750)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ 598 (750)
|||.+|+++|.+|++|++..|+.|+.|.+|+.. ....|+|.||||.|.|+++ |||.+....+.+++
T Consensus 542 ee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~ 613 (1184)
T 1i84_S 542 EECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLN 613 (1184)
T ss_dssp HTTSCTTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHH
T ss_pred hhhCCCCCChHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccHHHHHHHH
Confidence 999999999999999999999999999988753 3579999999999999999 66655555444443
No 6
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=5.7e-127 Score=1116.70 Aligned_cols=462 Identities=38% Similarity=0.646 Sum_probs=428.4
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|+|++++++.|+++...++|||||+||+.||++|+++++||||||| ||||||||| ++
T Consensus 39 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiis----GESGAGKTe---~t 111 (697)
T 1lkx_A 39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIIS----GESGAGKTE---AS 111 (697)
T ss_dssp EESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEE----CSTTSSHHH---HH
T ss_pred EeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEec----CCCCCCchh---hH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++.... ...+++++|+++||||||||||||++||||||||||++|+|+.+|.|+||
T Consensus 112 K~i~~yl-------a~~~~~~~~-------~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga 177 (697)
T 1lkx_A 112 KKIMQFL-------TFVSSNQSP-------NGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGG 177 (697)
T ss_dssp HHHHHHH-------HHHSCSSCH-------HHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECTTCCEEEE
T ss_pred HHHHHHH-------HhhcCCCCC-------ccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECCCCCEeee
Confidence 9999999 666652110 12368999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCC-CcccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELT-DASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
+|++|||||||||.|++||||||||||||+|+++++++.|+|. ++++|+||+++++..+++.||.++|.+++.||++||
T Consensus 178 ~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG 257 (697)
T 1lkx_A 178 KITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLG 257 (697)
T ss_dssp EEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred eeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998 999999999999988899999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeec-----c------------------ccCCChHHHHHHHhhceeccC----CcEEE
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKA-----A------------------VIAVPKQPLIDALTRKTFFAQ----GETVI 292 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~-----~------------------~~gv~~~~L~~~L~~~~~~~~----~e~~~ 292 (750)
|+++++.+||+|||||||||||+|.. . ++||++++|.++|+++++.++ ||.++
T Consensus 258 ~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~~~e~i~ 337 (697)
T 1lkx_A 258 LKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVIS 337 (697)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC----------CCC
T ss_pred CCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEeeccCCCCCeEE
Confidence 99999999999999999999999965 1 359999999999999999999 99999
Q ss_pred EeCCHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHH
Q psy14295 293 STLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLA 372 (750)
Q Consensus 293 ~~~~~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~ 372 (750)
++++++||.++||||||+||++||+|||.+||.+|..+. ....+||||||||||+|..||
T Consensus 338 ~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~Ns------------------- 397 (697)
T 1lkx_A 338 VPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGPVIGILDIYGFEVFQNNS------------------- 397 (697)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCCEEEEEECCCCCCCSSBC-------------------
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeEEeeccccccccCcCC-------------------
Confidence 999999999999999999999999999999999997543 346899999999999999998
Q ss_pred HhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhH
Q psy14295 373 AISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDI 452 (750)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~ 452 (750)
T Consensus 398 -------------------------------------------------------------------------------- 397 (697)
T 1lkx_A 398 -------------------------------------------------------------------------------- 397 (697)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchhhhhcch
Q psy14295 453 WDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMALID 532 (750)
Q Consensus 453 ~~i~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~ 532 (750)
|||||||||||+||+||++++|+.||++|.+|||+|..++|.||++|||||+++|.||+++||
T Consensus 398 -----------------FEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLD 460 (697)
T 1lkx_A 398 -----------------FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLD 460 (697)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHH
T ss_pred -----------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCchhhHHHHHHHHhCCCCCccCCCC-----CCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 533 EESKFPKGTDHTLLAKLHKTHGLHRNYLKPKS-----DINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
|||.+|+++|++|++|+...++.|+.|.+|+. ..+..|+|.||||.|.|+++ |||.+..+.+.++|..
T Consensus 461 Eec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S 538 (697)
T 1lkx_A 461 EACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSS 538 (697)
T ss_dssp HHHHSTTCCHHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTC
T ss_pred HhhCCCCCChHHHHHHHHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhcc
Confidence 99999999999999999999999999987642 12579999999999999999 7777777777777765
No 7
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.6e-125 Score=1113.32 Aligned_cols=468 Identities=40% Similarity=0.655 Sum_probs=423.5
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|||+++++++|+++...++|||||+||+.||++|+++++||||||| ||||||||| ++
T Consensus 116 Ty~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiS----GESGAGKTe---~t 188 (783)
T 4db1_A 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILIT----GESGAGKTV---NT 188 (783)
T ss_dssp EEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEE----CSTTSSHHH---HH
T ss_pred EecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEe----CCCCCCCch---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++..........++..+++++|+++||||||||||||++||||||||||++|+||.+|.|+||
T Consensus 189 K~im~yl-------a~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~~g~i~Ga 261 (783)
T 4db1_A 189 KRVIQYF-------AVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASA 261 (783)
T ss_dssp HHHHHHH-------HHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSBEEEE
T ss_pred HHHHHhh-------hhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECCCCCEeee
Confidence 9999999 666543211000001123579999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCC-CcccCccccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELT-DASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
+|++|||||||||.|++||||||||||||+|++++++..|+|. ++.+|.||+++. ..+++.||.++|..++.||++||
T Consensus 262 ~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g~-~~~~~~dD~~~f~~~~~Am~~lG 340 (783)
T 4db1_A 262 DIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGE-TTVASIDDAEELMATDNAFDVLG 340 (783)
T ss_dssp EEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSSC-CCCTTCCHHHHHHHHHHHHHHTT
T ss_pred EEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCCC-cccCCCCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999995 799999999875 56789999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhH
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQS 300 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A 300 (750)
|+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.+++|.++++++++||
T Consensus 341 fs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA 420 (783)
T 4db1_A 341 FTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQV 420 (783)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHHHHSCC------CCCCCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHhhcceEEEeCCeeEeeCCCHHHH
Confidence 99999999999999999999999973 24699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcch
Q psy14295 301 VDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSW 380 (750)
Q Consensus 301 ~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~ 380 (750)
.++||||||+||++||+|||.+||++|.++ .....+||||||||||+|+.||
T Consensus 421 ~~~rdalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~Ns--------------------------- 472 (783)
T 4db1_A 421 IYATGALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIAGFEIFDFNS--------------------------- 472 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECCCCCCCSSCC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccccccccccCC---------------------------
Confidence 999999999999999999999999999754 3356799999999999999998
Q ss_pred hHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHH
Q psy14295 381 IEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLA 460 (750)
Q Consensus 381 ~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~ 460 (750)
T Consensus 473 -------------------------------------------------------------------------------- 472 (783)
T 4db1_A 473 -------------------------------------------------------------------------------- 472 (783)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHhhchhhhhcchhhccCCC
Q psy14295 461 AVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQLNIMALIDEESKFPK 539 (750)
Q Consensus 461 ~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~~~~gi~~~l~~~~~~~~ 539 (750)
|||||||||||+||+||++|+|+.||++|.+|||+|..++| .||++|||||+ +|.||+++|||||.+|+
T Consensus 473 ---------FEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLie-kp~Gil~lLDEec~~p~ 542 (783)
T 4db1_A 473 ---------FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIMSILEEECMFPK 542 (783)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHH-STTSHHHHHCC-TTCTT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHh-CCCchHhhhhHHhcCCC
Confidence 99999999999999999999999999999999999999999 59999999998 48999999999999999
Q ss_pred CchhhHHHHHHHHh-CCCCCccCCCCC---CCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhhh
Q psy14295 540 GTDHTLLAKLHKTH-GLHRNYLKPKSD---INTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKNI 601 (750)
Q Consensus 540 ~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~~ 601 (750)
++|++|++|+...| +.|+.|.+|+.. ....|+|.||||.|.|+++ |||.+....+.++|..-
T Consensus 543 ~tD~tf~~kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~ 613 (783)
T 4db1_A 543 ATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSS 613 (783)
T ss_dssp CCHHHHHHHHHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCc
Confidence 99999999999887 889999988754 3568999999999999999 77777777777777653
No 8
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=5.4e-124 Score=1133.79 Aligned_cols=464 Identities=39% Similarity=0.634 Sum_probs=427.4
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|||+++++..|+++...++|||||+||+.||++|+++++||||||| ||||||||| ++
T Consensus 91 Ty~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiis----GESGAGKTe---~~ 163 (995)
T 2ycu_A 91 TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCT----GESGAGKTE---NT 163 (995)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEE----CBTTSSHHH---HH
T ss_pred eecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEec----CCCCCCchh---hH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++...... .......++++|+++||||||||||||++||||||||||++|+|+.+|.|+||
T Consensus 164 K~i~~yl-------a~~~~~~~~~~--~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga 234 (995)
T 2ycu_A 164 KKVIQYL-------AHVASSPKGRK--EPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGA 234 (995)
T ss_dssp HHHHHHH-------HHHSCCSSSCS--SSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEE
T ss_pred HHHHHHH-------HHhcccCCccc--cccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeee
Confidence 9999999 66655432100 00012578999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|.+|||||||||.|++||||||||||||+|++++++..|+|.++.+|+||+++. ..+++ ||.++|..++.||++|||
T Consensus 235 ~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~ 312 (995)
T 2ycu_A 235 NIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGF 312 (995)
T ss_dssp EEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTC
T ss_pred EEEEEeccCCeeeccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999987 45677 999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec-------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSV 301 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~-------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~ 301 (750)
+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.+++|.+++++++++|.
T Consensus 313 ~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~ 392 (995)
T 2ycu_A 313 SHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQAD 392 (995)
T ss_dssp CHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHH
Confidence 9999999999999999999999963 246999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchh
Q psy14295 302 DVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWI 381 (750)
Q Consensus 302 ~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~ 381 (750)
++||||||+||++||+|||.+||.+|..+......+||||||||||+|..||
T Consensus 393 ~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~Ns---------------------------- 444 (995)
T 2ycu_A 393 FALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNS---------------------------- 444 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccccccch----------------------------
Confidence 9999999999999999999999999975433256899999999999999998
Q ss_pred HHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHH
Q psy14295 382 EQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAA 461 (750)
Q Consensus 382 ~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~ 461 (750)
T Consensus 445 -------------------------------------------------------------------------------- 444 (995)
T 2ycu_A 445 -------------------------------------------------------------------------------- 444 (995)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHh--hchhhhhcchhhccCC
Q psy14295 462 VLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAI--KQLNIMALIDEESKFP 538 (750)
Q Consensus 462 ~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~--~~~gi~~~l~~~~~~~ 538 (750)
|||||||||||+||+||++++|+.||++|.+|||+|..++| .||++|||||++ +|.||+++|||||.+|
T Consensus 445 --------fEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p 516 (995)
T 2ycu_A 445 --------FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFP 516 (995)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSST
T ss_pred --------HHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCC
Confidence 99999999999999999999999999999999999999999 699999999997 4999999999999999
Q ss_pred CCchhhHHHHHHHHhCCCCCccCCCCC-CCCCeeeecccceEEeecc-----cchhhhhhHHHhhh
Q psy14295 539 KGTDHTLLAKLHKTHGLHRNYLKPKSD-INTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQ 598 (750)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ 598 (750)
+++|++|++|+...|+.|+.|.+|+.. ....|+|.||||.|.|+++ |||.+....+.+++
T Consensus 517 ~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~ 582 (995)
T 2ycu_A 517 KATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLH 582 (995)
T ss_dssp TCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHH
T ss_pred CCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchhhhccccccHHHHHHHH
Confidence 999999999999999999999988754 3579999999999999999 56655444444433
No 9
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.3e-124 Score=1102.47 Aligned_cols=461 Identities=45% Similarity=0.755 Sum_probs=428.9
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|||++++++.|+++...++|||||+||+.||++|+++++||||||| ||||||||| ++
T Consensus 117 Ty~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiis----GESGAGKTe---~t 189 (770)
T 1w9i_A 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLIT----GESGAGKTE---NT 189 (770)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEE----CSTTSSHHH---HH
T ss_pred eccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEe----cCCCCcchH---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++.... .....++++|+++||||||||||||++||||||||||++|+|+.+|.|+||
T Consensus 190 K~i~~yl-------a~~~~~~~~------~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga 256 (770)
T 1w9i_A 190 KKVIQYL-------ASVAGRNQA------NGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGA 256 (770)
T ss_dssp HHHHHHH-------HHHHCC------------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEE
T ss_pred HHHHHHH-------HHhccccCC------cccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeee
Confidence 9999999 666553221 112469999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCcc-ccCCCCcccCCcchHHHHHHHHHHHhhcC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRY-LTGGGSITCEGRDDAAEFADIRSAMKVLQ 239 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~y-l~~~~~~~~~~~~d~~~f~~l~~Al~~lG 239 (750)
+|.+|||||||||.|++||||||||||||+|+++++++.|+|.++.+|+| |+++ +..+++.||.++|..++.||++||
T Consensus 257 ~I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g-~~~~~~~dD~~~f~~~~~Am~~lG 335 (770)
T 1w9i_A 257 SIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSG-CVDIKGVSDSEEFKITRQAMDIVG 335 (770)
T ss_dssp EEEEECCCGGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSS-CCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccCceeecccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccCC-ccccCCCchHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999 7765 467789999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhCCceeec------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHH
Q psy14295 240 FSDEDIWDVFKLLAAVLHTGNIKYKA------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSV 301 (750)
Q Consensus 240 ~~~~e~~~I~~iLaaILhLGni~f~~------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~ 301 (750)
|+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.+++|.+++++++++|.
T Consensus 336 f~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~ 415 (770)
T 1w9i_A 336 FSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415 (770)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCCEECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCceEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHH
Confidence 99999999999999999999999962 246999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchh
Q psy14295 302 DVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWI 381 (750)
Q Consensus 302 ~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~ 381 (750)
++||||||+||++||+|||.+||.+|..+.. ..+||||||||||+|+.||
T Consensus 416 ~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~--~~~IGvLDI~GFE~F~~Ns---------------------------- 465 (770)
T 1w9i_A 416 SSRDALVKALYGRLFLWLVKKINNVLCQERK--AYFIGVLDIYGFEIFKVNS---------------------------- 465 (770)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC--SEEEEEEECCCCCCCSSCC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCeeeeccCccccccccCC----------------------------
Confidence 9999999999999999999999999975432 7899999999999999998
Q ss_pred HHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHH
Q psy14295 382 EQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAA 461 (750)
Q Consensus 382 ~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~ 461 (750)
T Consensus 466 -------------------------------------------------------------------------------- 465 (770)
T 1w9i_A 466 -------------------------------------------------------------------------------- 465 (770)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHh-hchhhhhcchhhccCCC
Q psy14295 462 VLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAI-KQLNIMALIDEESKFPK 539 (750)
Q Consensus 462 ~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~-~~~gi~~~l~~~~~~~~ 539 (750)
|||||||||||+||+||++++|+.||++|.+|||+|..++| .||++|||||++ +|.||+++|||||.+|+
T Consensus 466 --------FEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~ 537 (770)
T 1w9i_A 466 --------FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537 (770)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSS
T ss_pred --------HHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCC
Confidence 99999999999999999999999999999999999999999 599999999997 49999999999999999
Q ss_pred CchhhHHHHHH-HHhCCCCCccCCCCCCCCCeeeecccceEEeecc-----cchhhhhhHHHhhhhhh
Q psy14295 540 GTDHTLLAKLH-KTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR-----ERDRVLTRNILVLQKNI 601 (750)
Q Consensus 540 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~-----~R~~~l~~a~v~IQ~~~ 601 (750)
++|++|++|+. ..++.|+.|.+|+.. ...|+|.||||.|.|+++ |||.+....+.++|..-
T Consensus 538 ~tD~~f~~kL~~~~~~~~~~f~~p~~~-~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~ 604 (770)
T 1w9i_A 538 ATDNTLITKLHSHFSKKNAKYEEPRFS-KTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSS 604 (770)
T ss_dssp CCHHHHHHHHHHHHTTTSTTEECCSSC-SSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCS
T ss_pred CChHHHHHHHHHHhcCCCCCccCCCCC-CCceEeeccCccccccccChhhhccCcccHHHHHHHHhch
Confidence 99999999965 456889999998865 479999999999999999 77777777777777653
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=9.6e-125 Score=1111.41 Aligned_cols=457 Identities=39% Similarity=0.679 Sum_probs=417.9
Q ss_pred CcccCcEEEEcCCCCC-CCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQIL-PIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRT 79 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~-~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~ 79 (750)
||+|++||+||||+.+ |||++++++.|+++..+++|||||+||+.||++|+++++||||||| ||||||||| +
T Consensus 84 Ty~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiS----GESGAGKTe---~ 156 (784)
T 2v26_A 84 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVS----GESGAGKTE---N 156 (784)
T ss_dssp EEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEE----CSTTSSHHH---H
T ss_pred eeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEc----CCCCCCcee---h
Confidence 8999999999999999 5999999999999999999999999999999999999999999999 999999999 9
Q ss_pred ccchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceee
Q psy14295 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEG 159 (750)
Q Consensus 80 ~k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~g 159 (750)
+|++|+|| +.+++.. ..++++|+++||||||||||||++||||||||||++|+|+.+|.|+|
T Consensus 157 tK~i~~yl-------a~~~~~~-----------~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 218 (784)
T 2v26_A 157 TKFVLRYL-------TESYGTG-----------QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVG 218 (784)
T ss_dssp HHHHHHHH-------HHHHC-----------------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEE
T ss_pred HHHHHHHH-------HhhcCCC-----------CcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEee
Confidence 99999999 5554422 25899999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCC-----------------------
Q psy14295 160 AKIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGS----------------------- 216 (750)
Q Consensus 160 a~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~----------------------- 216 (750)
|+|++|||||||||.|++||||||||||||+|+++++++.|+|.++++|+||+++.+
T Consensus 219 a~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~ 298 (784)
T 2v26_A 219 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLK 298 (784)
T ss_dssp EEEEEECCCCGGGTCCCTTCCSBHHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHH
T ss_pred eeeeeeeccCCeEeeecCCCCcchhhHHHHcCCCHHHHHHcCCCChhhCccccCCCcccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999998753
Q ss_pred ---cccCCcchHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhCCceeec----------------------cccCCC
Q psy14295 217 ---ITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNIKYKA----------------------AVIAVP 271 (750)
Q Consensus 217 ---~~~~~~~d~~~f~~l~~Al~~lG~~~~e~~~I~~iLaaILhLGni~f~~----------------------~~~gv~ 271 (750)
...++.||.++|.+++.||++|||+++++.+||+|||||||||||+|.. .++||+
T Consensus 299 ~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~ 378 (784)
T 2v26_A 299 AGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLD 378 (784)
T ss_dssp HCCBCCSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCC
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCC
Confidence 1345689999999999999999999999999999999999999999953 135999
Q ss_pred hHHHHHHHhhceec-----cCCcEEEEeCCHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeeccccc
Q psy14295 272 KQPLIDALTRKTFF-----AQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGF 346 (750)
Q Consensus 272 ~~~L~~~L~~~~~~-----~~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gf 346 (750)
+++|.++|+++++. ++|+.+++|++++||.++||||||+||++||+|||.+||.+|... ....+|||||||||
T Consensus 379 ~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GF 456 (784)
T 2v26_A 379 QDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGF 456 (784)
T ss_dssp HHHHHHHHHEEEC-----------CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCC
T ss_pred HHHHHHHHhhcEEeccccCCCCCeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cccceeeecccCCc
Confidence 99999999999887 679999999999999999999999999999999999999999643 35679999999999
Q ss_pred ccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccc
Q psy14295 347 ENFNTNSGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITC 426 (750)
Q Consensus 347 e~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~ 426 (750)
|+|..||
T Consensus 457 E~f~~Ns------------------------------------------------------------------------- 463 (784)
T 2v26_A 457 EYFEHNS------------------------------------------------------------------------- 463 (784)
T ss_dssp CCCSSCC-------------------------------------------------------------------------
T ss_pred ccCCcCC-------------------------------------------------------------------------
Confidence 9999998
Q ss_pred cCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccc
Q psy14295 427 EGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQ 506 (750)
Q Consensus 427 ~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~ 506 (750)
|||||||||||+||+||++++|+.||++|.+|||+|.
T Consensus 464 -------------------------------------------FEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~ 500 (784)
T 2v26_A 464 -------------------------------------------FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVN 500 (784)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCC
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCC---------CCCeeeecccc
Q psy14295 507 HIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDI---------NTSFGLNHFAG 577 (750)
Q Consensus 507 ~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~F~I~H~aG 577 (750)
.++|.||++|||||+++|.||+++|||||.+|+++|++|++|++..++.|+.|..|+.+. +..|+|.||||
T Consensus 501 ~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG 580 (784)
T 2v26_A 501 EVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAG 580 (784)
T ss_dssp CCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTE
T ss_pred cccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCccccccccccCCCceEeeecCc
Confidence 999999999999999999999999999999999999999999999999999887776432 35899999999
Q ss_pred eEEeecc-----cchhhhhhHHHhhhhh
Q psy14295 578 VVFYDTR-----ERDRVLTRNILVLQKN 600 (750)
Q Consensus 578 ~V~Yd~~-----~R~~~l~~a~v~IQ~~ 600 (750)
.|.|+++ |||.+....+.+++..
T Consensus 581 ~V~Y~~~gfleKN~D~l~~~~~~ll~~S 608 (784)
T 2v26_A 581 AVCYETTQFVEKNNDALHMSLESLICES 608 (784)
T ss_dssp EEEEECTTHHHHTBCCCCHHHHHHHHTC
T ss_pred cEeeeccCHHHhccchhhHHHHHHHHhc
Confidence 9999999 7777766666666654
No 11
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=2.5e-122 Score=1117.74 Aligned_cols=445 Identities=46% Similarity=0.767 Sum_probs=424.2
Q ss_pred CcccCcEEEEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccc
Q psy14295 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTP 80 (750)
Q Consensus 1 t~~g~~lv~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~ 80 (750)
||+|++||+||||+.+|||+++++..|+++...++|||||+||+.||++|+++++||||||| ||||||||| ++
T Consensus 117 Ty~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiis----GESGAGKTe---~~ 189 (1010)
T 1g8x_A 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLIT----GESGAGKTE---NT 189 (1010)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEE----ESTTSSHHH---HH
T ss_pred eccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEe----CCCCCCcch---HH
Confidence 89999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred cchhhhhhhhhhhhhcccCCCcccccccCCCCCChhhHHHhhchHHHHhcCcccCCCCCCCCccceEEEEEecCCceeee
Q psy14295 81 TLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGA 160 (750)
Q Consensus 81 k~~l~~l~~~~~l~~~~s~~~~~~~~~~~~~~~~i~~~il~sn~iLEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~l~ga 160 (750)
|++|+|| +.+++.... .....++++|+++||||||||||||++||||||||||++|+|+.+|.|+||
T Consensus 190 K~i~~yl-------a~~~~~~~~------~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga 256 (1010)
T 1g8x_A 190 KKVIQYL-------ASVAGRNQA------NGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGA 256 (1010)
T ss_dssp HHHHHHH-------HHHHCCCCT------TTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEE
T ss_pred HHHHHHH-------HHhcccCCC------cccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcce
Confidence 9999999 666654321 123579999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccceeeecCCCCCcchhhhhhhcCCCHHHHHhccCCCcccCccccCCCCcccCCcchHHHHHHHHHHHhhcCC
Q psy14295 161 KIEQYLLEKSRIVSQSKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240 (750)
Q Consensus 161 ~i~~yLLEksRVv~~~~~ErnfHIFYqLlaG~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~l~~Al~~lG~ 240 (750)
+|.+|||||||||.|++||||||||||||+|++++++..|+|.++.+|+||++++|..+++.||.++|..++.||++|||
T Consensus 257 ~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~ 336 (1010)
T 1g8x_A 257 SIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGF 336 (1010)
T ss_dssp EEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCceeec------------------cccCCChHHHHHHHhhceeccCCcEEEEeCCHhhHHH
Q psy14295 241 SDEDIWDVFKLLAAVLHTGNIKYKA------------------AVIAVPKQPLIDALTRKTFFAQGETVISTLSREQSVD 302 (750)
Q Consensus 241 ~~~e~~~I~~iLaaILhLGni~f~~------------------~~~gv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~ 302 (750)
+++++.+||+|||||||||||+|.. .++||++++|.++|+++++.+++|.+++++++++|.+
T Consensus 337 ~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~ 416 (1010)
T 1g8x_A 337 SQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSS 416 (1010)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCBCCTTSSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccceEEecCCCccccCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHH
Confidence 9999999999999999999999963 1459999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccceeeecccccccccCCCCCCCCCcchhhhHHHHHHHHhcCCcchhH
Q psy14295 303 VRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWIE 382 (750)
Q Consensus 303 ~rdalak~LY~~LF~wiV~~iN~~L~~~~~~~~~~i~~ld~~gfe~~~~~~~~sgag~~~~~~~~~~~~~~~~~~~~~~~ 382 (750)
+||||||+||++||+|||.+||.+|.++. ...+||||||||||+|..||
T Consensus 417 ~rdalak~lY~~LF~wlV~~IN~~l~~~~--~~~~IgvLDI~GFE~f~~Ns----------------------------- 465 (1010)
T 1g8x_A 417 SRDALVKALYGRLFLWLVKKINNVLCSER--KAYFIGVLDISGFEIFKVNS----------------------------- 465 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSS--CSEEEEEEECCCCCCCSSBC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cCceeeeccCcccccCCcCc-----------------------------
Confidence 99999999999999999999999997543 56799999999999999988
Q ss_pred HHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q psy14295 383 QQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAV 462 (750)
Q Consensus 383 ~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~ 462 (750)
T Consensus 466 -------------------------------------------------------------------------------- 465 (1010)
T 1g8x_A 466 -------------------------------------------------------------------------------- 465 (1010)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcchhhhhcccchhHHHHHHHHHhhhhhHhhhhhhccccccccc-cChHHHHHHHHh-hchhhhhcchhhccCCCC
Q psy14295 463 LHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAI-KQLNIMALIDEESKFPKG 540 (750)
Q Consensus 463 l~~gn~~feqlciN~~nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~-~dn~~~l~li~~-~~~gi~~~l~~~~~~~~~ 540 (750)
|||||||||||+||+||++++|+.||++|.+|||+|..++| .||++|||||++ +|.||+++|||||.+|++
T Consensus 466 -------fEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~ 538 (1010)
T 1g8x_A 466 -------FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNA 538 (1010)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSC
T ss_pred -------HHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCC
Confidence 99999999999999999999999999999999999999999 599999999997 499999999999999999
Q ss_pred chhhHHHHHHHHhC-CCCCccCCCCCCCCCeeeecccceEEeecc
Q psy14295 541 TDHTLLAKLHKTHG-LHRNYLKPKSDINTSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 541 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~ 584 (750)
+|++|++|+.+.++ .|+.|.+|+.. ...|+|.||||.|.|+++
T Consensus 539 td~~f~~kl~~~~~~~~~~f~~~~~~-~~~F~i~HyAG~V~Y~~~ 582 (1010)
T 1g8x_A 539 TDNTLITKLHSHFSKKNAKYEEPRFS-KTEFGVTHYAGQVMYEIQ 582 (1010)
T ss_dssp CHHHHHHHHHHHHTTTCTTEECCTTC-SSEEEEEETTEEEEEECT
T ss_pred ChHHHHHHHHHHhcCCCCCcccCCCC-CCCEEEeeeceEEEEeec
Confidence 99999999999999 99999998865 469999999999999998
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=6.3e-47 Score=462.58 Aligned_cols=360 Identities=29% Similarity=0.444 Sum_probs=272.9
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc--chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC---------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH--SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG--------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g--------- 421 (750)
|||||||||+++|.+|+|||++++.. ++||++||+|||||||||||||++|||||||||||+|+||..|
T Consensus 162 sGESGAGKTe~~K~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~ 241 (1080)
T 2dfs_A 162 SGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRT 241 (1080)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEE
T ss_pred cCCCCCCccchHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeeccee
Confidence 79999999999999999999998754 5899999999999999999999999999999999999999766
Q ss_pred --------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChhh
Q psy14295 422 --------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDED 451 (750)
Q Consensus 422 --------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e 451 (750)
+...+++.||.++|..+++||+++||+++|
T Consensus 242 yLLEKsRVv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e 321 (1080)
T 2dfs_A 242 YLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSY 321 (1080)
T ss_dssp ECCCCGGGTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred EeecCceeeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHH
Confidence 234577899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchhhhhccc----c-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchh
Q psy14295 452 IWDVFKLLAAVLHTGNINFEQFCINY----A-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLN 526 (750)
Q Consensus 452 ~~~i~~~~~~~l~~gn~~feqlciN~----~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~g 526 (750)
+.+||+|+|+|||+||+.|.+-.-.- . .+.++ ....++..+.+++. +.+....+... +. . ..+|..
T Consensus 322 ~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e----~-i~~~~~ 392 (1080)
T 2dfs_A 322 QMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLT--IFCDLMGVDYEEMA-HWLCHRKLATA-TE----T-YIKPIS 392 (1080)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEETTTEEECCSSCHHHH--HHHHHHTCCHHHHH-HHHHEEEECC----------EEEECC
T ss_pred HHHHHHHHHHHHhccCceEEecCCcceeecCChHHHH--HHHHHhCCCHHHHH-HHhcccEEEeC-Cc----e-EEeCCC
Confidence 99999999999999999996521100 1 12222 33445555544444 33333222211 11 0 124566
Q ss_pred hhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc----------------------
Q psy14295 527 IMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR---------------------- 584 (750)
Q Consensus 527 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~---------------------- 584 (750)
+-...+....++|+.|+.+|.||...+ |..+..+. ....+.||++++|++.++.+
T Consensus 393 ~~qa~~~rdalak~lY~~LF~wlV~~i--N~~l~~~~-~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~ 469 (1080)
T 2dfs_A 393 KLHAINARDALAKHIYANLFNWIVDHV--NKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHV 469 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCSS-CCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcccc-ccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHh
Confidence 666777778899999999999998886 34433322 23568999999999999988
Q ss_pred -----------------------------------------------------------c----------c---------
Q psy14295 585 -----------------------------------------------------------E----------R--------- 586 (750)
Q Consensus 585 -----------------------------------------------------------~----------R--------- 586 (750)
. +
T Consensus 470 f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~ 549 (1080)
T 2dfs_A 470 FKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFI 549 (1080)
T ss_dssp HHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHSTTSHHHHHHHHTTSTTCCHHHHHHHHHHHHBTTBSSEECCTTCSSEEE
T ss_pred hHHHHHHHhhcCCccccccccccHHHHHHHhcCCceeeeccccccCCCCChHHHHHHHHHHhhcCCCCccCCCCCCCceE
Confidence 0 0
Q ss_pred ------------hhhhhh--------HHHhhhhh---------h------------------------------------
Q psy14295 587 ------------DRVLTR--------NILVLQKN---------I------------------------------------ 601 (750)
Q Consensus 587 ------------~~~l~~--------a~v~IQ~~---------~------------------------------------ 601 (750)
+..+++ .+.+++.. |
T Consensus 550 I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 629 (1080)
T 2dfs_A 550 IKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTS 629 (1080)
T ss_dssp EECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC-----------------------------------
T ss_pred EEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 000100 00111111 0
Q ss_pred -------------------------------------------------------h-----------h---------HHH
Q psy14295 602 -------------------------------------------------------R-----------G---------WVY 606 (750)
Q Consensus 602 -------------------------------------------------------R-----------g---------~~~ 606 (750)
- | |..
T Consensus 630 ~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~ 709 (1080)
T 2dfs_A 630 KEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFS 709 (1080)
T ss_dssp --CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHhhcccHHHHhHHhcCCCchhhHHHHHH
Confidence 0 0 000
Q ss_pred H---------------------------------------------------HHHHHHHHHHHhhhhhhhhHHHHHHHHh
Q psy14295 607 R---------------------------------------------------RRYKRLRAATMTIQKYWKGWAQRRRYQR 635 (750)
Q Consensus 607 R---------------------------------------------------r~~~~~r~aai~IQs~~Rg~~~R~~~~~ 635 (750)
| .+...+..+++.||++||||..|+.|.+
T Consensus 710 RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~ 789 (1080)
T 2dfs_A 710 RYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMR 789 (1080)
T ss_dssp HHTTTSCGGGCCSSHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCccCCCCChHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0001112568999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q psy14295 636 MRVGYMRLQALIRSRLLSHRFRHL--RGHIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKLQF--EYQS 711 (750)
Q Consensus 636 ~r~a~~~IQs~~R~~~~R~~~~~~--~~aai~IQa~~Rg~laRr~y~~~r~Aai~IQs~~R~~~aRr~y~~lk~--~~~~ 711 (750)
++.+++.||++|||+++|++++.+ ..+|+.||++||||++|+.|.+++.+++.||++|||+++|+.|+.++. ++..
T Consensus 790 ~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~ 869 (1080)
T 2dfs_A 790 MRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSII 869 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754 469999999999999999999999999999999999999999998875 5677
Q ss_pred HHHHHHHHHHHHH
Q psy14295 712 QIEALKLKRKEER 724 (750)
Q Consensus 712 ~~~~~r~~~~~e~ 724 (750)
+|..||...+++.
T Consensus 870 IQ~~~Rg~l~R~~ 882 (1080)
T 2dfs_A 870 IQKHVRGWLARVH 882 (1080)
T ss_dssp HHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887765544
No 13
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=6.7e-34 Score=335.26 Aligned_cols=239 Identities=32% Similarity=0.460 Sum_probs=180.2
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc-----------chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH-----------SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g 421 (750)
||||||||||++|.+|+|||++++.. ++||++||+|||||||||||||++|+|||||||||+|+||..|
T Consensus 177 SGESGAGKTe~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~~g 256 (783)
T 4db1_A 177 TGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATG 256 (783)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTS
T ss_pred eCCCCCCCchHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECCCC
Confidence 79999999999999999999997532 5799999999999999999999999999999999999999776
Q ss_pred -----------------------------------------------------------CcccccCCCchhhHHHHHHHH
Q psy14295 422 -----------------------------------------------------------GSITCEGRDDAAEFADIRSAM 442 (750)
Q Consensus 422 -----------------------------------------------------------~~~~~~~~~d~~~f~~~~~a~ 442 (750)
|...+++.||+++|.++++||
T Consensus 257 ~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g~~~~~~~dD~~~f~~~~~Am 336 (783)
T 4db1_A 257 KLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAF 336 (783)
T ss_dssp BEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSSCCCCTTCCHHHHHHHHHHHH
T ss_pred CEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCCCcccCCCCcHHHHHHHHHHH
Confidence 233567899999999999999
Q ss_pred HHcCCChhhHHHHHHHHHHHhhcCCcchhhhh----cccc-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHH
Q psy14295 443 KVLQFSDEDIWDVFKLLAAVLHTGNINFEQFC----INYA-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDAL 517 (750)
Q Consensus 443 ~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlc----iN~~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l 517 (750)
+++||+++|+..||+|+|+||||||+.|++-- .... .|.++ ....++..+.+++. +++....+... +..
T Consensus 337 ~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~aL~~~~i~~~-~e~-- 410 (783)
T 4db1_A 337 DVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEAD--KSAYLMGLNSADLL-KGLCHPRVKVG-NEY-- 410 (783)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHH--HHHHHTTCCHHHHH-HHHHSCC-------C--
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHH--HHHHHhCCCHHHHH-HhhcceEEEeC-Cee--
Confidence 99999999999999999999999999997621 1111 22333 34455555555444 33332222110 000
Q ss_pred HHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHh
Q psy14295 518 DLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILV 596 (750)
Q Consensus 518 ~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~ 596 (750)
..+|..+-...+....++|+.|+.+|.||...+ |..+.. +.....+.||++++|++.++.+.-.++ .+-+...
T Consensus 411 ---v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~I--N~~l~~-~~~~~~~IGvLDI~GFE~f~~NsFEQlCINyaNEk 484 (783)
T 4db1_A 411 ---VTKGQNVQQVIYATGALAKAVYERMFNWMVTRI--NATLET-KQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEK 484 (783)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCC-SCCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHH
T ss_pred ---EeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCC-CCCCCceEEEeccccccccccCCHHHHHHHHHHHH
Confidence 124555666667777889999999999999887 344332 233356899999999999999866665 4445567
Q ss_pred hhhhhhh
Q psy14295 597 LQKNIRG 603 (750)
Q Consensus 597 IQ~~~Rg 603 (750)
+|..+--
T Consensus 485 LQq~Fn~ 491 (783)
T 4db1_A 485 LQQFFNH 491 (783)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776644
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=1.5e-33 Score=335.21 Aligned_cols=238 Identities=31% Similarity=0.484 Sum_probs=177.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc------------chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCC
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH------------SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQ 420 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~ 420 (750)
||||||||||++|.+|+|||++++.. ++||++||+|||||||||||||++|+|||||||||+|+||..
T Consensus 175 SGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~ 254 (837)
T 1kk8_A 175 TGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPT 254 (837)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTT
T ss_pred eCCCCCCchhhHHHHHHHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECCC
Confidence 79999999999999999999997532 579999999999999999999999999999999999999976
Q ss_pred C-----------------------------------------------------------CcccccCCCchhhHHHHHHH
Q psy14295 421 G-----------------------------------------------------------GSITCEGRDDAAEFADIRSA 441 (750)
Q Consensus 421 g-----------------------------------------------------------~~~~~~~~~d~~~f~~~~~a 441 (750)
| |..++++.||+++|.++++|
T Consensus 255 g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~~~~~~~dD~~~f~~~~~A 334 (837)
T 1kk8_A 255 GKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEA 334 (837)
T ss_dssp SSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSCSCBTTBCHHHHHHHHHHH
T ss_pred CCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCCcccCCcChHHHHHHHHHH
Confidence 6 23356789999999999999
Q ss_pred HHHcCCChhhHHHHHHHHHHHhhcCCcchhhhh----cccc-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHH
Q psy14295 442 MKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFC----INYA-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDA 516 (750)
Q Consensus 442 ~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlc----iN~~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~ 516 (750)
|+++||+++|+.+||+|+|+|||+||+.|++-. .-.. .|.++ ....++..+.+++. +.+....+... +.
T Consensus 335 m~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~aL~~~~~~~~-~e-- 408 (837)
T 1kk8_A 335 FDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAE--KVAFLCGINAGDLL-KALLKPKVKVG-TE-- 408 (837)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHH--HHHHHHTSCHHHHH-HHHHSCEEC-------
T ss_pred HHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHH--HHHHHHCCCHHHHH-HHhcCcEEEcC-Cc--
Confidence 999999999999999999999999999997631 1111 22333 34445555544444 33332222110 00
Q ss_pred HHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHH
Q psy14295 517 LDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNIL 595 (750)
Q Consensus 517 l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v 595 (750)
. ..+|..+-...+....++|+.|+.+|.||...+ |..+. ++.....+.||++++|++.++.+.-+++ .+-+..
T Consensus 409 --~-v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~I--N~~l~-~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNE 482 (837)
T 1kk8_A 409 --M-VTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRV--NKTLD-TKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNE 482 (837)
T ss_dssp --C-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHC-CCCCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHH
T ss_pred --e-EEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcc-CCCCCcceEEEEecCCccccccccHHHHHHHHhhH
Confidence 0 124455666667777889999999999998887 34443 3333457899999999999999855554 333444
Q ss_pred hhhhhhh
Q psy14295 596 VLQKNIR 602 (750)
Q Consensus 596 ~IQ~~~R 602 (750)
.+|..+-
T Consensus 483 kLQq~Fn 489 (837)
T 1kk8_A 483 RLQQFFN 489 (837)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5665543
No 15
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=2.5e-33 Score=327.68 Aligned_cols=244 Identities=30% Similarity=0.453 Sum_probs=180.7
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcC-Cc---chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISG-KH---SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g------- 421 (750)
||||||||||++|.+|+|||++++ +. ++||++||+|||||||||||||++|+|||||||||+|+||..|
T Consensus 100 sGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I 179 (697)
T 1lkx_A 100 SGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKI 179 (697)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECTTCCEEEEEE
T ss_pred cCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECCCCCEeeeee
Confidence 799999999999999999999987 33 4799999999999999999999999999999999999999766
Q ss_pred -----------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCC
Q psy14295 422 -----------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFS 448 (750)
Q Consensus 422 -----------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~ 448 (750)
+...+++.||+++|.++++||+++||+
T Consensus 180 ~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~ 259 (697)
T 1lkx_A 180 TNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLK 259 (697)
T ss_dssp EEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCC
T ss_pred eeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCCCC
Confidence 123567899999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCcchhhh--------hcccch-hHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHH
Q psy14295 449 DEDIWDVFKLLAAVLHTGNINFEQF--------CINYAN-ENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDL 519 (750)
Q Consensus 449 ~~e~~~i~~~~~~~l~~gn~~feql--------ciN~~n-E~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~l 519 (750)
++|+.+||+|+|+|||+||+.|++. ..-..| +.++ ....++..+.+++. +.+....+..... .--+.
T Consensus 260 ~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~--~~a~LLgv~~~~L~-~~L~~r~~~~~~g-~~~e~ 335 (697)
T 1lkx_A 260 ESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLA--AAASCLKTDQQSLS-IALCYRSISTGVG-KRCSV 335 (697)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHH--HHHHHHTSCHHHHH-HHHHBCC-----------C
T ss_pred HHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHH--HHHHhhCCCHHHHH-HHHhccEEeeccC-CCCCe
Confidence 9999999999999999999999761 111222 2222 34455555555544 3333222211000 00000
Q ss_pred HHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhh
Q psy14295 520 IAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQ 598 (750)
Q Consensus 520 i~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ 598 (750)
..+|..+-...+....++|+.|+.+|.||...+ |..+..+. ......||++++|++.++.+.-+++ .+-+...+|
T Consensus 336 -i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~I--N~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQ 411 (697)
T 1lkx_A 336 -ISVPMDCNQAAYSRDALAKALYERLFNWLVSKI--NTIINCTT-EKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQ 411 (697)
T ss_dssp -CCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCS-CCCCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHH
T ss_pred -EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCC-CCceeEEeeccccccccCcCCHHHHHHHhhhhHHH
Confidence 124455556667777789999999999998887 34433222 2357899999999999999866665 444556777
Q ss_pred hhhhhH
Q psy14295 599 KNIRGW 604 (750)
Q Consensus 599 ~~~Rg~ 604 (750)
..+--.
T Consensus 412 q~F~~~ 417 (697)
T 1lkx_A 412 QLFIEL 417 (697)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 16
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=2.4e-33 Score=331.90 Aligned_cols=239 Identities=30% Similarity=0.472 Sum_probs=180.5
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc--chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC---------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH--SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG--------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g--------- 421 (750)
||||||||||++|.+|+|||++++.. ++||++||+|||||||||||||++|+|||||||||+|+||..|
T Consensus 162 sGESGAGKTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~ 241 (795)
T 1w7j_A 162 SGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRT 241 (795)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEE
T ss_pred eCCCCCCcchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceE
Confidence 79999999999999999999998754 5899999999999999999999999999999999999999766
Q ss_pred --------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCChhh
Q psy14295 422 --------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFSDED 451 (750)
Q Consensus 422 --------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e 451 (750)
+...+++.||+++|.++++||+++||+++|
T Consensus 242 YLLEKSRVv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e 321 (795)
T 1w7j_A 242 YLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSY 321 (795)
T ss_dssp ECCCGGGGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred EecccceEeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHH
Confidence 233567899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchhhhhcc---c-c-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhchh
Q psy14295 452 IWDVFKLLAAVLHTGNINFEQFCIN---Y-A-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLN 526 (750)
Q Consensus 452 ~~~i~~~~~~~l~~gn~~feqlciN---~-~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~~g 526 (750)
+.+||+|+|+||||||+.|++-.-. . . .|.++ ....++..+.+++. +.+....+... ++. ..+|..
T Consensus 322 ~~~i~~ilaaILhLGNi~F~~~~~~~~~v~~~~~~l~--~~a~LLgv~~~~L~-~aL~~~~~~~~-~e~-----v~~~~~ 392 (795)
T 1w7j_A 322 QMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLT--IFCDLMGVDYEEMA-HWLCHRKLATA-TET-----YIKPIS 392 (795)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEETTEEECCTTCHHHH--HHHHHHTCCHHHHH-HHHSEEEEECS-SCE-----EEEECC
T ss_pred HHHHHHHHHHHHhccCceEeecCCcceeecCChHHHH--HHHHHhCCCHHHHH-HHhcccEEEeC-Cce-----ecCCCC
Confidence 9999999999999999999652100 0 1 12222 34445555555544 33333222211 100 124555
Q ss_pred hhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhhhhhh
Q psy14295 527 IMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQKNIRG 603 (750)
Q Consensus 527 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~~~Rg 603 (750)
+-...+....++|+.|+.+|.||...+ |..+..+. ....+.||++++|++.++.+.-+++ .+-+...+|..+--
T Consensus 393 ~~qA~~~rdalaK~lY~rLF~wlV~~I--N~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~ 467 (795)
T 1w7j_A 393 KLHAINARDALAKHIYANLFNWIVDHV--NKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNM 467 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCSS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCc-cccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHH
Confidence 666667777889999999999998886 34443322 2356899999999999998855554 33445566666543
No 17
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2.5e-33 Score=331.75 Aligned_cols=241 Identities=32% Similarity=0.525 Sum_probs=172.7
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC-----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG----------- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g----------- 421 (750)
||||||||||++|.+|+|||++++..++||++||+|||||||||||||++|+|||||||||+|+||..|
T Consensus 146 SGESGAGKTe~tK~i~~yla~~~~~~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YL 225 (784)
T 2v26_A 146 SGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYL 225 (784)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHHC------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEEC
T ss_pred cCCCCCCceehHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeee
Confidence 799999999999999999999998878999999999999999999999999999999999999999776
Q ss_pred -----------------------------------------------Cc---------------------------cccc
Q psy14295 422 -----------------------------------------------GS---------------------------ITCE 427 (750)
Q Consensus 422 -----------------------------------------------~~---------------------------~~~~ 427 (750)
|. +.++
T Consensus 226 LEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~ 305 (784)
T 2v26_A 226 LEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDP 305 (784)
T ss_dssp CCCGGGTCCCTTCCSBHHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCS
T ss_pred ccCCeEeeecCCCCcchhhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCC
Confidence 10 1235
Q ss_pred CCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhh------h-cccc-hhHHHHHHHHHhhhhhHhhhh
Q psy14295 428 GRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQF------C-INYA-NENLQQFFVQHIFKLEQEEYN 499 (750)
Q Consensus 428 ~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feql------c-iN~~-nE~lq~~~~~~~f~~e~~~y~ 499 (750)
+.||+++|.++++||+++||+++|+.+||+|+|+||||||+.|++- | +... .|.++ ....++..+.+++.
T Consensus 306 ~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~--~~a~LLgv~~~~L~ 383 (784)
T 2v26_A 306 LLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALE--YCAELLGLDQDDLR 383 (784)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHH--HHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHH--HHHHHhCCCHHHHH
Confidence 6899999999999999999999999999999999999999999762 1 1111 12233 44556666655555
Q ss_pred hhccccccccccChHHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceE
Q psy14295 500 VEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVV 579 (750)
Q Consensus 500 ~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V 579 (750)
+.+....+.......--+ ...+|..+-...+...+++|+.|+.+|.||...++ ..+... ......||++++|++
T Consensus 384 -~aL~~r~~~t~~g~~~ge-~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN--~~l~~~--~~~~~IGvLDI~GFE 457 (784)
T 2v26_A 384 -VSLTTRVMLTTAGGAKGT-VIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVN--QCFPFE--TSSYFIGVLDIAGFE 457 (784)
T ss_dssp -HHHHEEEC------------CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSCCS--CCSEEEEEEECCCCC
T ss_pred -HHHhhcEEeccccCCCCC-eEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcc--cccceeeecccCCcc
Confidence 344332221000000000 11245556666777788999999999999998874 444322 234689999999999
Q ss_pred Eeecccchhh-hhhHHHhhhhhh
Q psy14295 580 FYDTRERDRV-LTRNILVLQKNI 601 (750)
Q Consensus 580 ~Yd~~~R~~~-l~~a~v~IQ~~~ 601 (750)
.++.+.-+++ .+-+...+|..+
T Consensus 458 ~f~~NsFEQlcINyaNEkLQq~F 480 (784)
T 2v26_A 458 YFEHNSFEQFCINYCNEKLQQFF 480 (784)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHH
Confidence 9998854443 333344555544
No 18
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.98 E-value=3e-33 Score=338.24 Aligned_cols=228 Identities=32% Similarity=0.530 Sum_probs=167.6
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCcchhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCCC----------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGG---------- 422 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g~---------- 422 (750)
||||||||||++|.+|+|||++++..+++|++||++||||||||||||++|+|||||||||+|+||..|.
T Consensus 150 SGESGAGKTestK~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YL 229 (1052)
T 4anj_A 150 SGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYL 229 (1052)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEEC
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999997760
Q ss_pred ---------------------------------------------------------------------------ccccc
Q psy14295 423 ---------------------------------------------------------------------------SITCE 427 (750)
Q Consensus 423 ---------------------------------------------------------------------------~~~~~ 427 (750)
...++
T Consensus 230 LEKSRVv~q~~gERNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 309 (1052)
T 4anj_A 230 LEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDP 309 (1052)
T ss_dssp CCSGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCS
T ss_pred cccCceeecCCCCCCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCC
Confidence 12356
Q ss_pred CCCchhhHHHHHHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhhh-------cccc-hhHHHHHHHHHhhhhhHhhhh
Q psy14295 428 GRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFC-------INYA-NENLQQFFVQHIFKLEQEEYN 499 (750)
Q Consensus 428 ~~~d~~~f~~~~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlc-------iN~~-nE~lq~~~~~~~f~~e~~~y~ 499 (750)
+.||+++|.++.+||+++||+++|+..||+|+|+||||||+.|++-. +... .+.++ ....++..+.+++.
T Consensus 310 ~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~ 387 (1052)
T 4anj_A 310 LLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALE--YCAELLGLDQDDLR 387 (1052)
T ss_dssp SCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHH--HHHHHTTCCHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHH--HHHHHhCCCHHHHH
Confidence 78999999999999999999999999999999999999999996521 1111 12222 34556655555554
Q ss_pred hhccccccccccChHHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceE
Q psy14295 500 VEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVV 579 (750)
Q Consensus 500 ~e~i~~~~~~~~dn~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V 579 (750)
+.+....+.......--+. ..+|..+-...+....++|+.|+.+|.||...++ ..+.... .....||++++|++
T Consensus 388 -~aLt~r~~~~~~~~~~~e~-i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN--~~l~~~~--~~~~IGILDI~GFE 461 (1052)
T 4anj_A 388 -VSLTTRVMLTTAGGAKGTV-IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVN--QCFPFET--SSYFIGVLDIAGFE 461 (1052)
T ss_dssp -HHHHEEC--------------CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSCCSC--CSEEEEEEECCCCC
T ss_pred -HHHhhceeeecccccCceE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccccccc--ccceEEEEecCCCc
Confidence 2322211111000000011 1234555566677777899999999999999874 4443322 34689999999999
Q ss_pred Eeecccchh
Q psy14295 580 FYDTRERDR 588 (750)
Q Consensus 580 ~Yd~~~R~~ 588 (750)
.++.+.-++
T Consensus 462 ~f~~NsFEQ 470 (1052)
T 4anj_A 462 YFEHNSFEQ 470 (1052)
T ss_dssp CCSSCCHHH
T ss_pred ccccCcHHH
Confidence 999983333
No 19
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.98 E-value=4.7e-33 Score=327.14 Aligned_cols=238 Identities=35% Similarity=0.517 Sum_probs=178.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc-----chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH-----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG------ 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g------ 421 (750)
||||||||||++|.+|+|||++++.. ++||++||+|||||||||||||++|+|||||||||+|+||..|
T Consensus 178 sGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~ 257 (770)
T 1w9i_A 178 TGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGAS 257 (770)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEE
T ss_pred ecCCCCcchHHHHHHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeeeE
Confidence 79999999999999999999998643 6899999999999999999999999999999999999999776
Q ss_pred -----------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCC
Q psy14295 422 -----------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFS 448 (750)
Q Consensus 422 -----------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~ 448 (750)
|..++++.||+++|.++++||+++||+
T Consensus 258 I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g~~~~~~~dD~~~f~~~~~Am~~lGf~ 337 (770)
T 1w9i_A 258 IQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFS 337 (770)
T ss_dssp EEEECCCGGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred EEEEeccCceeecccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccCCccccCCCchHHHHHHHHHHHHHcCCC
Confidence 233567899999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCcchhhh---hcccc-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhc
Q psy14295 449 DEDIWDVFKLLAAVLHTGNINFEQF---CINYA-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQ 524 (750)
Q Consensus 449 ~~e~~~i~~~~~~~l~~gn~~feql---ciN~~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~ 524 (750)
++|+.+||+|+|+|||+||+.|..- ..-.. .|.++ ....++..+.+++. +.+....+... +.. ..+|
T Consensus 338 ~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~aL~~~~~~~~-~e~-----v~~~ 408 (770)
T 1w9i_A 338 QEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALN--AASTVFGVNPSVLE-KALMEPRILAG-RDL-----VAQH 408 (770)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEECSSSSEECSCCHHHH--HHHHHHTCCHHHHH-HHHHSCEEEET-TEE-----EECC
T ss_pred HHHHHHHHHHHHHHHhhcCceEecCCCCccccCChHHHH--HHHHHhCCCHHHHH-HHhhCcEEEeC-Cee-----EEeC
Confidence 9999999999999999999999620 01111 22333 34445555544444 33332222111 000 0134
Q ss_pred hhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhhhhhh
Q psy14295 525 LNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQKNIRG 603 (750)
Q Consensus 525 ~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~~~Rg 603 (750)
..+-...+....++|+.|+.+|.||...+ |..+..+ .. ..+.||++++|++.++.+.-.++ .+-+...+|..+--
T Consensus 409 ~~~~qA~~~rdalaK~lY~rLF~wlV~~I--N~~l~~~-~~-~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~ 484 (770)
T 1w9i_A 409 LNVEKSSSSRDALVKALYGRLFLWLVKKI--NNVLCQE-RK-AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNH 484 (770)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCS-CC-SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCC-CC-CCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHh
Confidence 55556667777789999999999998876 3443322 22 57899999999999999866654 33445567766544
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.97 E-value=2e-32 Score=340.90 Aligned_cols=221 Identities=32% Similarity=0.492 Sum_probs=168.4
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCC----------------cchhHHHHHhhchhhhhhccccccccCCCCCCcceeEee
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGK----------------HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 416 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~ 416 (750)
|||||||||+++|.+|+|||++++. .++||++||+|||||||||||||++|+|||||||||+|+
T Consensus 175 sGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~ 254 (1184)
T 1i84_S 175 TGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 254 (1184)
T ss_dssp CCSTTSSTTHHHHHHHHHHHHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEE
T ss_pred ecCCCCCccHHHHHHHHHHHHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEE
Confidence 8999999999999999999999864 368999999999999999999999999999999999999
Q ss_pred ecCCC----------------------------------------------------------CcccccCCCchhhHHHH
Q psy14295 417 FNSQG----------------------------------------------------------GSITCEGRDDAAEFADI 438 (750)
Q Consensus 417 ~~~~g----------------------------------------------------------~~~~~~~~~d~~~f~~~ 438 (750)
||..| |..++++.||.++|..+
T Consensus 255 f~~~g~i~ga~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~~~~~~~~~d~~~f~~~ 334 (1184)
T 1i84_S 255 FDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQET 334 (1184)
T ss_dssp ECSSSCEEEEEEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTSSCCCTTCCHHHHHHHH
T ss_pred ECCCCCEeeeEEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCCCcCCCCCChHHHHHHH
Confidence 99776 23467799999999999
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHHhhcCCcchhhhh----cccc-hhHHHHHHHHHhhhhhHhhhhhhccccccccccCh
Q psy14295 439 RSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFC----INYA-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDN 513 (750)
Q Consensus 439 ~~a~~~~gf~~~e~~~i~~~~~~~l~~gn~~feqlc----iN~~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn 513 (750)
++||+++||+++|+.+||+|+|+|||+||+.|.+-. .-.. .+.++ ....++..+.+++. .++....+... +
T Consensus 335 ~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~--~~a~lLg~~~~~l~-~~l~~~~~~~~-~ 410 (1184)
T 1i84_S 335 LEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQ--KVCHLMGINVTDFT-RSILTPRIKVG-R 410 (1184)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHH--HHHHHTTSCHHHHH-HHHHSCCCCCT-T
T ss_pred HHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHH--HHHHHHCCCHHHHH-HHhcCcEEEeC-C
Confidence 999999999999999999999999999999997521 0111 22333 34445555544444 33332222110 0
Q ss_pred HHHHHHHHhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecc
Q psy14295 514 QDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR 584 (750)
Q Consensus 514 ~~~l~li~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~ 584 (750)
.. ..+|..+-...+....++|+.|+.+|.||...+ |..+..+......+.||++++|+..++.+
T Consensus 411 e~-----~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~i--N~~l~~~~~~~~~~IgvLDi~GFE~f~~N 474 (1184)
T 1i84_S 411 DV-----VQKAQTKEQADFAIEALAKAKFERLFRWILTRV--NKALDKTKRQGASFLGILDIAGFEIFEIN 474 (1184)
T ss_dssp SC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTCC------CEEEEEEECCCCCCCSSB
T ss_pred ce-----EecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhCCCccCCcceEEEeecCCcCCCCcc
Confidence 00 113455556667777789999999999999987 44444322334578999999999999988
No 21
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.97 E-value=2.5e-32 Score=331.30 Aligned_cols=237 Identities=35% Similarity=0.518 Sum_probs=177.2
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc-----chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC------
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH-----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG------ 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g------ 421 (750)
||||||||||++|.+|+|||++++.. ++||++||+|||||||||||||++|+|||||||||+|+||..|
T Consensus 178 sGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~ 257 (1010)
T 1g8x_A 178 TGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGAS 257 (1010)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEE
T ss_pred eCCCCCCcchHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcceE
Confidence 79999999999999999999998632 6899999999999999999999999999999999999999766
Q ss_pred -----------------------------------------------------CcccccCCCchhhHHHHHHHHHHcCCC
Q psy14295 422 -----------------------------------------------------GSITCEGRDDAAEFADIRSAMKVLQFS 448 (750)
Q Consensus 422 -----------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~gf~ 448 (750)
+++++++.||+++|..+++||+++||+
T Consensus 258 i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~ 337 (1010)
T 1g8x_A 258 IQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFS 337 (1010)
T ss_dssp EEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEcCCceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCC
Confidence 235678999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCcchhhhh---cccc-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHHHhhc
Q psy14295 449 DEDIWDVFKLLAAVLHTGNINFEQFC---INYA-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQ 524 (750)
Q Consensus 449 ~~e~~~i~~~~~~~l~~gn~~feqlc---iN~~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li~~~~ 524 (750)
++|+.+||+|+|+|||+||+.|.+-. .-.. .|.++ ....++..+.+++. +.+....+... +.. ..+|
T Consensus 338 ~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e~-----v~~~ 408 (1010)
T 1g8x_A 338 QEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALN--AASTVFGVNPSVLE-KALMEPRILAG-RDL-----VAQH 408 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCCTTSSCBCSCCHHHH--HHHHHHTSCHHHHH-HHHHSCEEESS-SSE-----EECC
T ss_pred HHHHHHHHHHHHHHHHhccceEEecCCCccccCChHHHH--HHHHHHCCCHHHHH-HHHhCcEEEeC-Cee-----EEeC
Confidence 99999999999999999999997531 0011 22232 33444444444444 33322222110 000 0134
Q ss_pred hhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhhhhh
Q psy14295 525 LNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQKNIR 602 (750)
Q Consensus 525 ~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~~~R 602 (750)
..+-...+....++|+.|+.+|.||...+ |..+..+. ...+.||++++|++.++.+.-+++ .+-+...+|..+-
T Consensus 409 ~~~~qa~~~rdalak~lY~~LF~wlV~~I--N~~l~~~~--~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~ 483 (1010)
T 1g8x_A 409 LNVEKSSSSRDALVKALYGRLFLWLVKKI--NNVLCSER--KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFN 483 (1010)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCSS--CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCC--cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHH
Confidence 55556667777889999999999998876 33333222 356899999999999998855554 3334445665543
No 22
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.97 E-value=1.8e-32 Score=332.93 Aligned_cols=238 Identities=32% Similarity=0.456 Sum_probs=176.7
Q ss_pred CCCCCCCcchhhhHHHHHHHHhcCCc---------chhHHHHHhhchhhhhhccccccccCCCCCCcceeEeeecCCC--
Q psy14295 353 SGESGAGKTESTKLILQYLAAISGKH---------SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQG-- 421 (750)
Q Consensus 353 ~~~sgag~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~g~a~~~~n~~~~~~gk~~~~~~~~~g-- 421 (750)
||||||||||++|.+|+|||++++.. ++||++||+|||||||||||||++|+|||||||||+|+||..|
T Consensus 152 sGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i 231 (995)
T 2ycu_A 152 TGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYI 231 (995)
T ss_dssp ECBTTSSHHHHHHHHHHHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCE
T ss_pred cCCCCCCchhhHHHHHHHHHHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCE
Confidence 79999999999999999999997532 6899999999999999999999999999999999999999876
Q ss_pred --------------------------------------------------------CcccccCCCchhhHHHHHHHHHHc
Q psy14295 422 --------------------------------------------------------GSITCEGRDDAAEFADIRSAMKVL 445 (750)
Q Consensus 422 --------------------------------------------------------~~~~~~~~~d~~~f~~~~~a~~~~ 445 (750)
|..++++ ||+++|.++++||+++
T Consensus 232 ~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~-dD~~~f~~~~~A~~~l 310 (995)
T 2ycu_A 232 VGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPG-QERELFQETLESLRVL 310 (995)
T ss_dssp EEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCSCSSTT-THHHHHHHHHHHHHHT
T ss_pred eeeEEEEEeccCCeeeccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCccccCC-cHHHHHHHHHHHHHHc
Confidence 2235667 9999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhcCCcchhhhh----cccc-hhHHHHHHHHHhhhhhHhhhhhhccccccccccChHHHHHHH
Q psy14295 446 QFSDEDIWDVFKLLAAVLHTGNINFEQFC----INYA-NENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLI 520 (750)
Q Consensus 446 gf~~~e~~~i~~~~~~~l~~gn~~feqlc----iN~~-nE~lq~~~~~~~f~~e~~~y~~e~i~~~~~~~~dn~~~l~li 520 (750)
||+++|+.+||+|+|+|||+||+.|.+-. .-.. .|.++ ....++..+.+++. +.+....+... +..
T Consensus 311 g~~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~--~~a~LLgv~~~~L~-~~l~~~~~~~~-~e~----- 381 (995)
T 2ycu_A 311 GFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQ--KLCRLLGLGVTDFS-RALLTPRIKVG-RDY----- 381 (995)
T ss_dssp TCCHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHH--HHHHHTTCCHHHHH-HHHHSCEEESS-SSE-----
T ss_pred CCCHHHHHHHHHHHHHHHhhccceEeecCCCcccccCChHHHH--HHHHHHCCCHHHHH-HHhcCcEEEcC-Cce-----
Confidence 99999999999999999999999997532 1111 22333 34445555544444 33332222111 000
Q ss_pred HhhchhhhhcchhhccCCCCchhhHHHHHHHHhCCCCCccCCCCCCCCCeeeecccceEEeecccchhh-hhhHHHhhhh
Q psy14295 521 AIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRV-LTRNILVLQK 599 (750)
Q Consensus 521 ~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~H~aG~V~Yd~~~R~~~-l~~a~v~IQ~ 599 (750)
..+|..+-...+....++|+.|+.+|.||...+ |..+..+......+.||++++|++.++.+.-+++ .+-+...+|.
T Consensus 382 v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~i--N~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq 459 (995)
T 2ycu_A 382 VQKAQTKEQADFALEALAKATYERLFRWLVLRL--NRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQ 459 (995)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHH
Confidence 124455566667777889999999999998887 3444322221357899999999999999855554 3334456666
Q ss_pred hhh
Q psy14295 600 NIR 602 (750)
Q Consensus 600 ~~R 602 (750)
.+-
T Consensus 460 ~F~ 462 (995)
T 2ycu_A 460 LFN 462 (995)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 23
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.03 E-value=6.1e-10 Score=89.30 Aligned_cols=50 Identities=28% Similarity=0.321 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 659 LRGHIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKLQFE 708 (750)
Q Consensus 659 ~~~aai~IQa~~Rg~laRr~y~~~r~Aai~IQs~~R~~~aRr~y~~lk~~ 708 (750)
+..+++.||++||||++|+.|.+++.|+++||++|||+++|+.|..++..
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~ 53 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRT 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999888664
No 24
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.5e-09 Score=83.59 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHH
Q psy14295 659 LRGHIVGLQARARGYLTRRMYAQKMW--AIVKIQAHVRRMIAQRHY 702 (750)
Q Consensus 659 ~~~aai~IQa~~Rg~laRr~y~~~r~--Aai~IQs~~R~~~aRr~y 702 (750)
++.+++.||++|||+++|+.|..+++ ||++||++|||+++|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 45688999999999999999998886 999999999999999887
No 25
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.77 E-value=1.2e-08 Score=81.79 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHH
Q psy14295 638 VGYMRLQALIRSRLLSHRFRHLRGHIVGLQARARGYLTRRMYAQKM 683 (750)
Q Consensus 638 ~a~~~IQs~~R~~~~R~~~~~~~~aai~IQa~~Rg~laRr~y~~~r 683 (750)
.+++.||++|||++.|+.|..++.+++.||++||||++|+.|..++
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666667777788888888888888777765
No 26
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.2e-08 Score=74.82 Aligned_cols=42 Identities=24% Similarity=0.128 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHhHHHHHHH
Q psy14295 638 VGYMRLQALIRSRLLSHRFRHLRG--HIVGLQARARGYLTRRMY 679 (750)
Q Consensus 638 ~a~~~IQs~~R~~~~R~~~~~~~~--aai~IQa~~Rg~laRr~y 679 (750)
.+++.||++|||+++|+.|..++. +++.||++||||++|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 345555555555555555554444 788888888888888876
No 27
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.96 E-value=1.4e-05 Score=65.10 Aligned_cols=48 Identities=31% Similarity=0.474 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 659 LRGHIVGLQARARGYLTRRMYAQK---MWAIVKIQAHVRRMIAQRHYQKLQ 706 (750)
Q Consensus 659 ~~~aai~IQa~~Rg~laRr~y~~~---r~Aai~IQs~~R~~~aRr~y~~lk 706 (750)
+...++.+|+.+|||++|+.|.++ +.|+.+||+++|+|..++.+...+
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~ 55 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWK 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 446789999999999999999998 679999999999999998876643
No 28
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.91 E-value=1.1e-05 Score=65.49 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHH
Q psy14295 659 LRGHIVGLQARARGYLTRRMYAQK---MWAIVKIQAHVRRMIAQRHYQKLQ 706 (750)
Q Consensus 659 ~~~aai~IQa~~Rg~laRr~y~~~---r~Aai~IQs~~R~~~aRr~y~~lk 706 (750)
+...++.+|+.+|||++|+.|.++ +.|+.+||+++|+|..++.+...+
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~ 53 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWK 53 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHH
Confidence 345689999999999999999998 689999999999999998776543
No 29
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.29 E-value=0.00032 Score=56.94 Aligned_cols=49 Identities=37% Similarity=0.666 Sum_probs=41.4
Q ss_pred chhhhhhHHHhhhhhhhhHHHHHHHHHH---HHHHHhhhhhhhhHHHHHHHH
Q psy14295 586 RDRVLTRNILVLQKNIRGWVYRRRYKRL---RAATMTIQKYWKGWAQRRRYQ 634 (750)
Q Consensus 586 R~~~l~~a~v~IQ~~~Rg~~~Rr~~~~~---r~aai~IQs~~Rg~~~R~~~~ 634 (750)
||..+.+.+..+|+.+||++.|+.|.++ +.|+..||..+|+|..++.+.
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 5777888889999999999999999887 678889999999988877654
No 30
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.71 E-value=0.0015 Score=52.77 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=33.3
Q ss_pred hhhHHHhhhhhhhhHHHHHHHHHH---HHHHHhhhhhhhhHHHHHHHH
Q psy14295 590 LTRNILVLQKNIRGWVYRRRYKRL---RAATMTIQKYWKGWAQRRRYQ 634 (750)
Q Consensus 590 l~~a~v~IQ~~~Rg~~~Rr~~~~~---r~aai~IQs~~Rg~~~R~~~~ 634 (750)
+.+.+..+|+.+||++.|+.|.++ +.|+..||..+|+|..++.+.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 455677788888888888888776 567778888888877766544
No 31
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=91.44 E-value=0.14 Score=35.12 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy14295 684 WAIVKIQAHVRRMIAQRH 701 (750)
Q Consensus 684 ~Aai~IQs~~R~~~aRr~ 701 (750)
.+|++||++||+|+.|+.
T Consensus 7 ~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467777777777776654
No 32
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=91.24 E-value=0.1 Score=34.67 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy14295 684 WAIVKIQAHVRRMIAQR 700 (750)
Q Consensus 684 ~Aai~IQs~~R~~~aRr 700 (750)
.||++||++||+|+.++
T Consensus 7 ~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46677777777776653
No 33
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=90.83 E-value=2.3 Score=39.81 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHH
Q psy14295 661 GHIVGLQARARGYLTRRMYAQK 682 (750)
Q Consensus 661 ~aai~IQa~~Rg~laRr~y~~~ 682 (750)
.++++||+.+|||++|+++.-+
T Consensus 46 ~~~i~iQktvR~~L~rkkhkPR 67 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHKPR 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 4555666666666666655543
No 34
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=88.72 E-value=0.27 Score=33.68 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhHHHHHH
Q psy14295 661 GHIVGLQARARGYLTRRM 678 (750)
Q Consensus 661 ~aai~IQa~~Rg~laRr~ 678 (750)
.+|+.||..||+|+.|+.
T Consensus 7 ~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478999999999998874
No 35
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=88.65 E-value=0.21 Score=33.23 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHhHHHHH
Q psy14295 660 RGHIVGLQARARGYLTRR 677 (750)
Q Consensus 660 ~~aai~IQa~~Rg~laRr 677 (750)
..+|+.||.+||+|+.|+
T Consensus 6 e~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 357889999999998875
No 36
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=84.16 E-value=3.3 Score=38.77 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q psy14295 601 IRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRMRVGYMRLQALIRSRLLSHRFRH 658 (750)
Q Consensus 601 ~Rg~~~Rr~~~~~r~aai~IQs~~Rg~~~R~~~~~~r~a~~~IQs~~R~~~~R~~~~~ 658 (750)
+..|+.|.++.+..-++.-+ .+-+....-...+++.||+.+|||++|++++-
T Consensus 15 V~~WLi~sRWrK~q~~~lsv------IKLknKI~yR~~~~i~iQktvR~~L~rkkhkP 66 (148)
T 3gn4_A 15 VNHWLICSRWKKVQWCSLSV------IKLKNKIKYRAEACIKMQKTIRMWLCKRRHKP 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46677777776544322111 11111111122355666666666666665553
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.60 E-value=0.25 Score=46.47 Aligned_cols=29 Identities=17% Similarity=0.021 Sum_probs=22.1
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+....++|. |++|+|||. .++.+.+.+
T Consensus 39 ~~~~~~~~ll~----G~~G~GKT~---l~~~~~~~~ 67 (195)
T 1jbk_A 39 QRRTKNNPVLI----GEPGVGKTA---IVEGLAQRI 67 (195)
T ss_dssp TSSSSCEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred hcCCCCceEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34567889999 999999999 666555544
No 38
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.20 E-value=0.87 Score=42.62 Aligned_cols=64 Identities=11% Similarity=-0.012 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 15 ILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 15 ~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.-|.....+.|+.....++.-+-- ..+. ............++|. |++|+|||. .++.+.+.+
T Consensus 4 ~l~~~~~~l~~~~~~~~~~~~~g~~~-~~~~-l~~~l~~~~~~~vll~----G~~G~GKT~---la~~~~~~~ 67 (187)
T 2p65_A 4 ALEKYSRDLTALARAGKLDPVIGRDT-EIRR-AIQILSRRTKNNPILL----GDPGVGKTA---IVEGLAIKI 67 (187)
T ss_dssp CTTTTEEEHHHHHHTTCSCCCCSCHH-HHHH-HHHHHTSSSSCEEEEE----SCGGGCHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccchhhcchH-HHHH-HHHHHhCCCCCceEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34445555666676554443322211 1111 2223334667889999 999999999 665555544
No 39
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=81.06 E-value=0.45 Score=45.33 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=20.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.+++. |++|+|||+ -++.+...+
T Consensus 37 ~g~~~~l~----G~~G~GKTt---L~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFV----GSPGVGKTH---LAVATLKAI 62 (180)
T ss_dssp GCCEEEEC----CSSSSSHHH---HHHHHHHHH
T ss_pred CCCEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 46788888 999999999 665555544
No 40
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=80.28 E-value=0.45 Score=46.73 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=22.7
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..+.|.|. |.||||||+ -++.+...+
T Consensus 19 ~~~g~~v~I~----G~sGsGKST---l~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALS----GAPGSGKST---LSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEE----CCTTSCTHH---HHHHHHHHH
T ss_pred CCCCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3566788888 999999999 777777766
No 41
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=78.14 E-value=0.55 Score=45.72 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=19.0
Q ss_pred HhhhcCCCeEEEeecCcccccccccccccccccchhh
Q psy14295 49 HMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 49 ~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
.|........|+|. |.+|||||+ -++.+..
T Consensus 22 ~~m~~~~g~~i~l~----G~~GsGKST---l~~~L~~ 51 (200)
T 4eun_A 22 SMMTGEPTRHVVVM----GVSGSGKTT---IAHGVAD 51 (200)
T ss_dssp ------CCCEEEEE----CCTTSCHHH---HHHHHHH
T ss_pred hhhcCCCCcEEEEE----CCCCCCHHH---HHHHHHH
Confidence 44555667889898 999999999 5554444
No 42
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.13 E-value=0.79 Score=44.56 Aligned_cols=28 Identities=18% Similarity=0.136 Sum_probs=22.0
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
......|+|. |.||||||+ -++.+...+
T Consensus 22 ~~~g~~i~l~----G~sGsGKST---l~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVT----GLSGSGKST---LACALNQML 49 (200)
T ss_dssp TSCCEEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CCCCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4557888888 999999999 666666555
No 43
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.91 E-value=0.62 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=16.7
Q ss_pred hhhcCCCeEEEeecCccccccccccc
Q psy14295 50 MKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 50 ~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
|..-.....|+|. |.+|||||+
T Consensus 3 m~~i~~g~~i~l~----G~~GsGKST 24 (191)
T 1zp6_A 3 MTDDLGGNILLLS----GHPGSGKST 24 (191)
T ss_dssp ---CCTTEEEEEE----ECTTSCHHH
T ss_pred ccCCCCCeEEEEE----CCCCCCHHH
Confidence 4455667889998 999999999
No 44
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.92 E-value=0.73 Score=44.10 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=18.1
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|+|+ |+||||||+ -.+.++..+
T Consensus 5 g~~i~i~----GpsGsGKST---L~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL----GAHGVGRRH---IKNTLITKH 29 (180)
T ss_dssp CCEEEEE----CCTTSSHHH---HHHHHHHHC
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 3567888 999999999 555554433
No 45
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=74.31 E-value=0.67 Score=44.56 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=17.4
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..|+|+ |.||||||+ ..+.++..+
T Consensus 2 ~ii~l~----GpsGaGKsT---l~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVIS----GPSGTGKST---LLKKLFAEY 25 (186)
T ss_dssp CCEEEE----SSSSSSHHH---HHHHHHHHC
T ss_pred CEEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 356777 999999999 555555443
No 46
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=74.03 E-value=0.69 Score=45.22 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=12.4
Q ss_pred EEeecCccccccccccc
Q psy14295 59 IFLKDLFLDEIGMGSET 75 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~ 75 (750)
|||+ |+||||||+
T Consensus 4 IVi~----GPSG~GK~T 16 (186)
T 1ex7_A 4 IVIS----GPSGTGKST 16 (186)
T ss_dssp EEEE----CCTTSSHHH
T ss_pred EEEE----CCCCCCHHH
Confidence 8899 999999999
No 47
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=73.83 E-value=1.2 Score=45.73 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=25.8
Q ss_pred HHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 46 GYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 46 ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++..+. -...+.+.|. |+||||||+ ..+.++.++
T Consensus 16 vl~~i~-i~~g~~v~i~----Gp~GsGKST---ll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVT----GPTGSGKST---TIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEE----CSTTCSHHH---HHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEE----CCCCccHHH---HHHHHHHhC
Confidence 344444 5667888888 999999999 777776666
No 48
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=72.88 E-value=0.85 Score=42.97 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=18.8
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|+++ |-||||||+ -++.+.+.+
T Consensus 3 ~~~i~l~----G~~GsGKST---~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILN----GGSSAGKSG---IVRCLQSVL 27 (178)
T ss_dssp CCEEEEE----CCTTSSHHH---HHHHHHHHS
T ss_pred ceEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 3568888 999999999 665554443
No 49
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=72.33 E-value=0.79 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=18.8
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.++|. |+||||||+ -.+.++..+
T Consensus 4 g~~i~lv----GpsGaGKST---Ll~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLS----GPSGAGKST---LLKKLFQEH 28 (198)
T ss_dssp -CCEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 3567777 999999999 666666654
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=71.98 E-value=1.5 Score=42.87 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=24.1
Q ss_pred HHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 48 THMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 48 ~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+......+.++|. |++|+|||. -++.+.+.+
T Consensus 44 ~~~~~~~~~~~~ll~----G~~G~GKT~---la~~l~~~~ 76 (242)
T 3bos_A 44 KSAASGDGVQAIYLW----GPVKSGRTH---LIHAACARA 76 (242)
T ss_dssp HHHHHTCSCSEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred HHHHhCCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 334444567899999 999999999 665555544
No 51
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.11 E-value=1.1 Score=44.01 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=19.5
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...-|+|+ |.||||||+ .++.+...+
T Consensus 7 ~g~~i~l~----GpsGsGKsT---l~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLS----GPSGVGKGT---VREAVFKDP 32 (208)
T ss_dssp CCCEEEEE----CCTTSCHHH---HHHHHHHST
T ss_pred CCcEEEEE----CcCCCCHHH---HHHHHHhhC
Confidence 45678888 999999999 655555444
No 52
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.81 E-value=1.1 Score=43.19 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=17.1
Q ss_pred CeEEEeecCcccccccccccccccccchhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
.+.|.|. |.||||||+ -.+.+..
T Consensus 7 g~ii~l~----Gp~GsGKST---l~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIIS----APSGAGKTS---LVRALVK 29 (205)
T ss_dssp CCEEEEE----CCTTSCHHH---HHHHHHH
T ss_pred CcEEEEE----CcCCCCHHH---HHHHHHh
Confidence 4677888 999999999 5444443
No 53
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=70.63 E-value=1 Score=42.16 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=19.9
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|.|+|. |.+|||||+ -++.+-+.|
T Consensus 6 ~~~~i~l~----G~~GsGKST---va~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLI----GFMGSGKSS---LAQELGLAL 31 (168)
T ss_dssp --CEEEEE----SCTTSSHHH---HHHHHHHHH
T ss_pred ccceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 35899999 999999999 776665554
No 54
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=69.76 E-value=1.1 Score=43.69 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=19.0
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+.|. |+||||||+ -.+.+...+
T Consensus 18 ~~Gei~~l~----GpnGsGKST---Ll~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLS----GPSAVGKST---VVRCLRERI 44 (207)
T ss_dssp -CCCEEEEE----CSTTSSHHH---HHHHHHHHS
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 445677787 999999999 555544443
No 55
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=69.73 E-value=1.2 Score=42.91 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=18.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|+|. |.||||||+ -++.+...+
T Consensus 5 ~g~~i~l~----G~~GsGKST---l~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLS----GPSGVGKGT---VRKRIFEDP 30 (207)
T ss_dssp CCCEEEEE----CSTTSCHHH---HHHHHHHCT
T ss_pred CCCEEEEE----CCCCCCHHH---HHHHHHHhh
Confidence 34577888 999999999 555544443
No 56
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=69.72 E-value=1.1 Score=43.73 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=19.4
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...-|+|+ |.||||||+ -++.+.+.+
T Consensus 11 ~~~~i~l~----G~sGsGKsT---l~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVC----GPSGVGKGT---LIKKVLSEF 36 (204)
T ss_dssp CCCCEEEE----CCTTSCHHH---HHHHHHHHC
T ss_pred cCCEEEEE----CCCCCCHHH---HHHHHHHhC
Confidence 45678888 999999999 555555444
No 57
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=69.27 E-value=1.7 Score=49.62 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=21.0
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.+.|+|. |.||||||+ -.+.+...+
T Consensus 366 ~~~G~iI~Li----G~sGSGKST---Lar~La~~L 393 (552)
T 3cr8_A 366 ERQGFTVFFT----GLSGAGKST---LARALAARL 393 (552)
T ss_dssp GGSCEEEEEE----ESSCHHHHH---HHHHHHHHH
T ss_pred cccceEEEEE----CCCCChHHH---HHHHHHHhh
Confidence 3456788888 999999999 665555544
No 58
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=68.81 E-value=1.5 Score=42.39 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=19.0
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.|+|. |++|+|||. -++.+...+
T Consensus 55 ~~~~l~----G~~GtGKT~---la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLH----GSFGVGKTY---LLAAIANEL 78 (202)
T ss_dssp CEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 889999 999999999 555555444
No 59
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=68.29 E-value=1.8 Score=40.26 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=20.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.++|. |++|+|||. -++.+..++
T Consensus 35 ~g~~~~l~----G~~G~GKTt---L~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVW----GEEGAGKSH---LLQAWVAQA 60 (149)
T ss_dssp CCSEEEEE----SSSTTTTCH---HHHHHHHHH
T ss_pred CCCEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 56788888 999999999 555555544
No 60
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.22 E-value=1.4 Score=42.64 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=19.9
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+|. |.||||||+ -++.+.+.+
T Consensus 25 ~~~i~l~----G~~GsGKsT---l~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLT----GYMGAGKTT---LGKAFARKL 49 (199)
T ss_dssp CCEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred CCEEEEE----cCCCCCHHH---HHHHHHHHc
Confidence 4688888 999999999 666666554
No 61
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=66.13 E-value=1.3 Score=41.09 Aligned_cols=23 Identities=13% Similarity=-0.100 Sum_probs=17.3
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|+ |.+|||||+ -++.+.+.+
T Consensus 3 ~i~l~----G~~GsGKsT---~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILE----GPDCCFKST---VAAKLSKEL 25 (173)
T ss_dssp EEEEE----CSSSSSHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 47777 999999999 666555444
No 62
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=66.10 E-value=1.3 Score=43.78 Aligned_cols=26 Identities=12% Similarity=-0.079 Sum_probs=19.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.+.|. |+||||||+ -.+.++..+
T Consensus 22 ~G~~~~lv----GpsGsGKST---Ll~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVIC----GPSGVGKGT---LIKKLLNEF 47 (218)
T ss_dssp CCCCEEEE----CSTTSSHHH---HHHHHHHHS
T ss_pred CCCEEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 45677777 999999999 665555543
No 63
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=66.05 E-value=2 Score=46.39 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=22.8
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....+.|+|. |+||||||+ ..+.++.++
T Consensus 133 ~~~g~~i~iv----G~~GsGKTT---ll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVT----GPTGSGKST---TIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEE----CSSSSSHHH---HHHHHHHHH
T ss_pred hcCCCEEEEE----CCCCCCHHH---HHHHHHhhc
Confidence 3556788888 999999999 777777766
No 64
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=65.51 E-value=1.6 Score=43.63 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
.....++|+ |+||||||+
T Consensus 14 ~~G~ii~l~----GpsGsGKST 31 (219)
T 1s96_A 14 AQGTLYIVS----APSGAGKSS 31 (219)
T ss_dssp -CCCEEEEE----CCTTSCHHH
T ss_pred CCCcEEEEE----CCCCCCHHH
Confidence 345788888 999999999
No 65
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=65.37 E-value=0.99 Score=43.35 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=20.0
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.|.|. |+||||||+ -.+.++.++
T Consensus 3 ~~v~Iv----G~SGsGKST---L~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIV----GTSDSGKTT---LITRMMPIL 26 (171)
T ss_dssp CEEEEE----ESCHHHHHH---HHHHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 456677 999999999 888888877
No 66
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=65.24 E-value=2.1 Score=41.77 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=23.1
Q ss_pred hhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 51 KRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 51 ~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
........|+|. |.+|||||+ -++.+.+++
T Consensus 20 ~~~~~~~~i~~~----G~~GsGKsT---~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLT----GLSASGKST---LAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred ccCCCCCEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 444556788888 999999999 777666665
No 67
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=64.86 E-value=1.8 Score=40.61 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=17.4
Q ss_pred CeEEEeecCcccccccccccccccccchhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
...|+|. |.+|||||+ -++.+..
T Consensus 8 g~~i~l~----G~~GsGKST---l~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLM----GVSGSGKSA---VASEVAH 30 (175)
T ss_dssp SEEEEEE----CSTTSCHHH---HHHHHHH
T ss_pred CcEEEEE----cCCCCCHHH---HHHHHHH
Confidence 4678888 999999999 5554443
No 68
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=64.80 E-value=1.5 Score=42.52 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=18.2
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
--|+|. |.+|||||+ -++.+.+.+
T Consensus 19 ~~I~l~----G~~GsGKST---la~~L~~~l 42 (202)
T 3t61_A 19 GSIVVM----GVSGSGKSS---VGEAIAEAC 42 (202)
T ss_dssp SCEEEE----CSTTSCHHH---HHHHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 358888 999999999 666555544
No 69
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=64.53 E-value=1.7 Score=42.25 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=18.8
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....|.|. |.||||||+ -++.+...+
T Consensus 4 ~~~~~i~i~----G~~GsGKST---l~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIA----GGTASGKTT---LAQALARTL 30 (211)
T ss_dssp -CCEEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CCcEEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 345677788 999999999 555554443
No 70
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=64.25 E-value=1.7 Score=42.81 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=19.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|+|+ |.||||||+ -.+.+++.+
T Consensus 18 ~g~~ivl~----GPSGaGKsT---L~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLI----GASGVGRSH---IKNALLSQN 43 (197)
T ss_dssp SCCEEEEE----CCTTSSHHH---HHHHHHHHC
T ss_pred CCCEEEEE----CcCCCCHHH---HHHHHHhhC
Confidence 35788999 999999999 555555443
No 71
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=64.13 E-value=2.8 Score=43.75 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=22.1
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+....|.|. |.||||||+ -++.+..++
T Consensus 28 ~~~~~ii~I~----G~sGsGKST---la~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFS----GPQGSGKSF---TSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCCCeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3456778888 999999999 777666666
No 72
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=64.01 E-value=1.5 Score=41.44 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=19.0
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|. |.+|||||+ -++.+.+.+
T Consensus 4 ~~I~i~----G~~GsGKsT---~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVT----GVPGVGSTT---SSQLAMDNL 27 (192)
T ss_dssp CEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 468888 999999999 666666555
No 73
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=63.70 E-value=3.2 Score=47.33 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCCCcchh---hhHHHHHHhh-hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 33 GELPPHIFA---IGDNGYTHMK-RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 33 ~~~~PHi~~---~a~~ay~~~~-~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|||-|. |+......+. +.+....|++. |-+|||||+ .++.+.+.|
T Consensus 345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~----G~~GsGKST---ia~~La~~L 396 (546)
T 2gks_A 345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLT----GLPCAGKST---IAEILATML 396 (546)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CCCCCccccchhHHHHHHHhhccccccceEEEcc----CCCCCCHHH---HHHHHHHHh
Confidence 456778777 5544433331 23345677788 999999999 666655554
No 74
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=63.43 E-value=1.8 Score=41.01 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=19.8
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|+|. |.||||||+ -++.+.+.+
T Consensus 10 ~~~~i~i~----G~~GsGKst---~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLT----GTPGVGKTT---LGKELASKS 35 (180)
T ss_dssp CCCCEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred cCCeEEEE----eCCCCCHHH---HHHHHHHHh
Confidence 34678888 999999999 666655544
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=62.91 E-value=2.4 Score=40.08 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.0
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
....+.+. |+||||||+
T Consensus 8 ~gei~~l~----G~nGsGKST 24 (171)
T 4gp7_A 8 ELSLVVLI----GSSGSGKST 24 (171)
T ss_dssp SSEEEEEE----CCTTSCHHH
T ss_pred CCEEEEEE----CCCCCCHHH
Confidence 45667777 999999999
No 76
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=62.31 E-value=2.2 Score=40.33 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.+. |++|||||+
T Consensus 31 ~~Ge~v~L~----G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLN----GDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEE----CSTTSSHHH
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 566788888 999999999
No 77
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=62.22 E-value=2.1 Score=40.48 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=19.5
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|++. |.+|||||+ -++.+..++
T Consensus 4 ~g~~i~l~----G~~GsGKST---~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLT----GLSGAGKTT---VSMALEEYL 29 (179)
T ss_dssp CCEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 35678888 999999999 665555544
No 78
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=62.17 E-value=2.4 Score=42.15 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.4
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
....|.|. |.+|||||+
T Consensus 19 ~g~~i~i~----G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIE----GNIGSGKTT 35 (230)
T ss_dssp CCEEEEEE----CSTTSCHHH
T ss_pred CceEEEEE----CCCCCCHHH
Confidence 45677777 999999999
No 79
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=62.04 E-value=2.9 Score=46.06 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=25.3
Q ss_pred HHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 46 GYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 46 ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
++..+. ......|+|+ |++|||||+ ..+.++.++
T Consensus 158 ~L~~l~-~~~ggii~I~----GpnGSGKTT---lL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVT----GPTGSGKST---TLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEE----CSTTSCHHH---HHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEE----CCCCCCHHH---HHHHHHhhc
Confidence 455554 3556778888 999999999 777666666
No 80
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.99 E-value=2.1 Score=40.69 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=18.8
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|++. |.+|||||+ -++.+.+.+
T Consensus 5 ~~~I~l~----G~~GsGKST---~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVT----GHPATGKTT---LSQALATGL 29 (193)
T ss_dssp CEEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 4567888 999999999 666555544
No 81
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=61.74 E-value=1.3 Score=43.08 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=17.6
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.+|||||+ -++.+.+++
T Consensus 3 I~i~----G~~GsGKsT---l~~~L~~~l 24 (214)
T 1gtv_A 3 IAIE----GVDGAGKRT---LVEKLSGAF 24 (214)
T ss_dssp EEEE----EEEEEEHHH---HHHHHHHHH
T ss_pred EEEE----cCCCCCHHH---HHHHHHHHH
Confidence 6666 999999999 776666666
No 82
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=61.46 E-value=2.5 Score=43.92 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=19.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
....||++ |.||||||+ -++.+...
T Consensus 32 ~~~livl~----G~sGsGKST---la~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLG----GQPGSGKTS---LRSAIFEE 56 (287)
T ss_dssp SCEEEEEE----CCTTSCTHH---HHHHHHHH
T ss_pred CCeEEEEE----CCCCCCHHH---HHHHHHHH
Confidence 45678888 999999999 66655443
No 83
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.17 E-value=3.4 Score=39.83 Aligned_cols=28 Identities=11% Similarity=0.091 Sum_probs=20.5
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.+..++|. |++|+|||. .++.+.+.+
T Consensus 42 ~~~~~~~ll~----G~~G~GKT~---l~~~~~~~~ 69 (250)
T 1njg_A 42 GRIHHAYLFS----GTRGVGKTS---IARLLAKGL 69 (250)
T ss_dssp TCCCSEEEEE----CSTTSCHHH---HHHHHHHHH
T ss_pred CCCCeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3445688999 999999999 665555444
No 84
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.15 E-value=3.5 Score=42.22 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.++++. |++|+|||. .++.+.+.+
T Consensus 48 ~~~~~vll~----G~~GtGKT~---la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMI----GPTGVGKTE---IARRLAKLA 74 (310)
T ss_dssp CCCCCEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 457789998 999999999 666665554
No 85
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.08 E-value=2.4 Score=41.99 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=10.4
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.|.|. |.||||||+
T Consensus 26 ~G~ii~l~----Gp~GsGKST 42 (231)
T 3lnc_A 26 VGVILVLS----SPSGCGKTT 42 (231)
T ss_dssp CCCEEEEE----CSCC----C
T ss_pred CCCEEEEE----CCCCCCHHH
Confidence 34677788 999999999
No 86
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=60.88 E-value=2.1 Score=42.88 Aligned_cols=25 Identities=16% Similarity=-0.096 Sum_probs=19.6
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+|. |.+|||||+ -++.+.+.+
T Consensus 27 ~~~i~l~----G~~GsGKST---l~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVIL----GPPGSGKGT---VCQRIAQNF 51 (246)
T ss_dssp CCEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CcEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 5788888 999999999 666665544
No 87
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=60.75 E-value=2.1 Score=41.59 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=18.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
....|+|. |+||+|||+ .+..+++
T Consensus 15 ~G~gvli~----G~SGaGKSt---lal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLIT----GEANIGKSE---LSLALID 38 (181)
T ss_dssp TTEEEEEE----ESSSSSHHH---HHHHHHH
T ss_pred CCEEEEEE----cCCCCCHHH---HHHHHHH
Confidence 35678888 999999999 6544444
No 88
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=60.71 E-value=2.3 Score=41.33 Aligned_cols=27 Identities=11% Similarity=-0.042 Sum_probs=20.9
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....|.|. |.||||||+ .++.+...+
T Consensus 20 ~~~~~i~i~----G~~GsGKst---l~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGID----GLSRSGKTT---LANQLSQTL 46 (201)
T ss_dssp SSSEEEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred CCCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 345678888 999999999 776666655
No 89
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.57 E-value=1.9 Score=46.44 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=21.1
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.|+|+ |+||||||+ ..+.++.++
T Consensus 173 ~~G~~i~iv----G~sGsGKST---ll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVA----GETGSGKTT---LMKALMQEI 199 (361)
T ss_dssp HTTCCEEEE----ESSSSCHHH---HHHHHHTTS
T ss_pred hcCCEEEEE----CCCCCCHHH---HHHHHHhcC
Confidence 345788888 999999999 666666655
No 90
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=60.36 E-value=2 Score=40.20 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=16.4
Q ss_pred eEEEeecCcccccccccccccccccchhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
..|+|. |.||||||+ -++.+..
T Consensus 5 ~~i~l~----G~~GsGKST---l~~~La~ 26 (173)
T 1kag_A 5 RNIFLV----GPMGAGKST---IGRQLAQ 26 (173)
T ss_dssp CCEEEE----CCTTSCHHH---HHHHHHH
T ss_pred CeEEEE----CCCCCCHHH---HHHHHHH
Confidence 457888 999999999 5544433
No 91
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.15 E-value=1.9 Score=40.82 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=19.0
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|. |-+|||||+ -++.+.+.+
T Consensus 3 ~I~i~----G~~GsGKsT---~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVT----GIPGVGKST---VLAKVKEIL 25 (194)
T ss_dssp EEEEE----ECTTSCHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 47777 999999999 777777766
No 92
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=60.04 E-value=3.3 Score=39.53 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=21.5
Q ss_pred hhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 50 MKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 50 ~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....+....++|. |++|+|||. .++.+.+.+
T Consensus 32 ~l~~~~~~~~ll~----G~~G~GKT~---l~~~l~~~~ 62 (226)
T 2chg_A 32 YVERKNIPHLLFS----GPPGTGKTA---TAIALARDL 62 (226)
T ss_dssp HHHTTCCCCEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred HHhCCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3344444458888 999999999 666555544
No 93
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.62 E-value=2.8 Score=45.06 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=24.2
Q ss_pred HHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 46 GYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 46 ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..+.. .....|+|+ |++|||||+ ..+.++.++
T Consensus 114 ~l~~l~~-~~~g~i~I~----GptGSGKTT---lL~~l~g~~ 147 (356)
T 3jvv_A 114 VFKRVSD-VPRGLVLVT----GPTGSGKST---TLAAMLDYL 147 (356)
T ss_dssp HHHHHHH-CSSEEEEEE----CSTTSCHHH---HHHHHHHHH
T ss_pred HHHHHHh-CCCCEEEEE----CCCCCCHHH---HHHHHHhcc
Confidence 3455543 334588888 999999999 777666666
No 94
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=59.51 E-value=2 Score=39.57 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.3
Q ss_pred EEEeecCcccccccccccccccccch
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLS 83 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~ 83 (750)
.|+|. |.+|||||+ -++.+
T Consensus 3 ~I~l~----G~~GsGKsT---~a~~L 21 (179)
T 3lw7_A 3 VILIT----GMPGSGKSE---FAKLL 21 (179)
T ss_dssp EEEEE----CCTTSCHHH---HHHHH
T ss_pred EEEEE----CCCCCCHHH---HHHHH
Confidence 46777 999999999 66655
No 95
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=59.42 E-value=2.3 Score=40.93 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=15.4
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.|. |++|||||+ -.+.+...+
T Consensus 3 i~l~----G~nGsGKTT---Ll~~l~g~l 24 (178)
T 1ye8_A 3 IIIT----GEPGVGKTT---LVKKIVERL 24 (178)
T ss_dssp EEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 4556 999999999 555444444
No 96
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=59.13 E-value=2.4 Score=40.13 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=19.3
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|++. |.+|||||+ -++.+.+.+
T Consensus 5 ~~~i~l~----G~~GsGKst---~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLI----GLMGAGKTS---VGSQLAKLT 29 (185)
T ss_dssp CCEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3568888 999999999 666665544
No 97
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=58.79 E-value=4 Score=44.26 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=32.0
Q ss_pred CCCCcchhhhHHHHHHhh-hcCCCeEEEeecCcccccccccccccccccchhh
Q psy14295 34 ELPPHIFAIGDNGYTHMK-RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 34 ~~~PHi~~~a~~ay~~~~-~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
.+.|++......+...+. .....+.|+|. |.+|||||+ -++.+..
T Consensus 146 ~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~----G~~GsGKST---l~~~l~~ 191 (377)
T 1svm_A 146 CLLPKMDSVVYDFLKCMVYNIPKKRYWLFK----GPIDSGKTT---LAAALLE 191 (377)
T ss_dssp TTSTTHHHHHHHHHHHHHHCCTTCCEEEEE----CSTTSSHHH---HHHHHHH
T ss_pred hhhhhhhHHHHHHHHhcccccCCCCEEEEE----CCCCCCHHH---HHHHHHh
Confidence 445677666667777764 34567788998 999999999 5544443
No 98
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=58.78 E-value=2.4 Score=40.45 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=12.7
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
+.|+|. |.+|||||+
T Consensus 3 ~ii~l~----G~~GaGKST 17 (189)
T 2bdt_A 3 KLYIIT----GPAGVGKST 17 (189)
T ss_dssp EEEEEE----CSTTSSHHH
T ss_pred eEEEEE----CCCCCcHHH
Confidence 456777 999999999
No 99
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=58.67 E-value=3.4 Score=43.11 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=24.2
Q ss_pred HHHhhhcC--CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 47 YTHMKRFG--QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 47 y~~~~~~~--~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.+.... ...+++|. |++|+|||. -++.+.+.+
T Consensus 26 ~~~~~~~~~~~~~~lll~----G~~GtGKT~---la~~i~~~~ 61 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIY----GSVGTGKTH---LLQAAGNEA 61 (324)
T ss_dssp HHHHHHTTTTSCSSEEEE----CSSSSSHHH---HHHHHHHHH
T ss_pred HHHHHhCcCCCCCeEEEE----CCCCCcHHH---HHHHHHHHH
Confidence 34444433 45789999 999999999 666666555
No 100
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=58.45 E-value=2.6 Score=42.44 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 29 ~~Ge~~~ii----G~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIM----GPSGSGKST 46 (235)
T ss_dssp CTTCEEEEE----CSTTSSHHH
T ss_pred cCCCEEEEE----CCCCCcHHH
Confidence 456777777 999999999
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=58.11 E-value=2.5 Score=38.72 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=18.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
..+..|+|. ||+|+|||. .++.+-+
T Consensus 25 ~~~~~vll~----G~~GtGKt~---lA~~i~~ 49 (143)
T 3co5_A 25 KRTSPVFLT----GEAGSPFET---VARYFHK 49 (143)
T ss_dssp TCSSCEEEE----EETTCCHHH---HHGGGCC
T ss_pred CCCCcEEEE----CCCCccHHH---HHHHHHH
Confidence 456679999 999999999 5544433
No 102
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=57.98 E-value=3.9 Score=42.77 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=20.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+....|-|. |.||||||+ -++.+...+
T Consensus 78 ~~g~iigI~----G~~GsGKST---l~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIA----GSVAVGKST---TARVLQALL 104 (308)
T ss_dssp CCCEEEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred CCCEEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 455678888 999999999 665555544
No 103
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=57.86 E-value=2.4 Score=38.90 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.9
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
..+..|+|. ||+|+|||.
T Consensus 22 ~~~~~vll~----G~~GtGKt~ 39 (145)
T 3n70_A 22 ETDIAVWLY----GAPGTGRMT 39 (145)
T ss_dssp TCCSCEEEE----SSTTSSHHH
T ss_pred CCCCCEEEE----CCCCCCHHH
Confidence 456789999 999999999
No 104
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=57.74 E-value=2.9 Score=44.11 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=20.3
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
......|.|. |.||||||+ -++.+...+
T Consensus 87 ~~~g~ivgI~----G~sGsGKST---L~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVA----GSVAVGKST---TARVLQALL 114 (312)
T ss_dssp SCCCEEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred CCCCEEEEEE----CCCCchHHH---HHHHHHhhc
Confidence 3556778888 999999999 555544444
No 105
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=57.71 E-value=2.6 Score=41.24 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=18.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..|.|. |.||||||+ -++.+...+
T Consensus 6 ~~i~i~----G~~GsGKST---l~~~L~~~~ 29 (227)
T 1cke_A 6 PVITID----GPSGAGKGT---LCKAMAEAL 29 (227)
T ss_dssp CEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 567888 999999999 666665544
No 106
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.65 E-value=3.1 Score=42.05 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=19.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+..|++. |.+|||||+ -++.+.+.+
T Consensus 30 ~~~~~i~l~----G~~GsGKST---la~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLG----GQSGAGKTT---IHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEE----SCGGGTTHH---HHHHHHHHT
T ss_pred cCCeEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 345678888 999999999 665554444
No 107
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=57.04 E-value=2.4 Score=40.50 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.1
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|. |.+|||||+ -++.+.+++
T Consensus 2 ~I~i~----G~~GsGKsT---~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIF----GTVGAGKST---ISAEISKKL 24 (205)
T ss_dssp EEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred EEEEE----CCCccCHHH---HHHHHHHhc
Confidence 36777 999999999 776666665
No 108
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=56.52 E-value=2.5 Score=39.37 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=17.4
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|. |.+|||||+ -++.+-+.+
T Consensus 4 ~I~l~----G~~GsGKsT---~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMV----GARGCGMTT---VGRELARAL 26 (173)
T ss_dssp CEEEE----SCTTSSHHH---HHHHHHHHH
T ss_pred eEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 47777 999999999 666555544
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.16 E-value=4.1 Score=43.15 Aligned_cols=34 Identities=6% Similarity=-0.100 Sum_probs=25.4
Q ss_pred HHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 47 YTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 47 y~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+...+...+++|. |++|+|||. .++.+.+.+
T Consensus 36 l~~~~~~~~~~~vll~----G~~G~GKT~---la~~l~~~~ 69 (384)
T 2qby_B 36 IRYFVKNEVKFSNLFL----GLTGTGKTF---VSKYIFNEI 69 (384)
T ss_dssp HHHHHTTCCCCEEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred HHHHHcCCCCCcEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3444456667899999 999999999 666666554
No 110
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=56.12 E-value=3 Score=40.44 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=17.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
...-|.|. |.||||||+ -++.+..
T Consensus 20 ~~~~i~i~----G~~GsGKST---l~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGIS----GVTNSGKTT---LAKNLQK 43 (207)
T ss_dssp CCEEEEEE----ESTTSSHHH---HHHHHHT
T ss_pred CCeEEEEE----CCCCCCHHH---HHHHHHH
Confidence 34678888 999999999 5444433
No 111
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=55.92 E-value=2.6 Score=40.53 Aligned_cols=24 Identities=13% Similarity=-0.050 Sum_probs=18.9
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..|+|+ |.||||||+ -.+.++..+
T Consensus 7 ~~i~i~----G~sGsGKTT---l~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFA----AWSGTGKTT---LLKKLIPAL 30 (174)
T ss_dssp CEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred eEEEEE----eCCCCCHHH---HHHHHHHhc
Confidence 457777 999999999 666666665
No 112
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=55.76 E-value=2.6 Score=39.09 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=17.5
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|. |.+|||||+ -++.+-+.+
T Consensus 2 ~I~l~----G~~GsGKsT---~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLI----GFMCSGKST---VGSLLSRSL 24 (168)
T ss_dssp EEEEE----SCTTSCHHH---HHHHHHHHH
T ss_pred eEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 37777 999999999 666655544
No 113
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=55.50 E-value=2.7 Score=47.46 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=19.8
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.|+|+ |++|||||+ ..+.++.++
T Consensus 259 ~g~~i~I~----GptGSGKTT---lL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVV----GETASGKTT---TLNAIMMFI 284 (511)
T ss_dssp TTCCEEEE----ESTTSSHHH---HHHHHGGGS
T ss_pred CCCEEEEE----CCCCCCHHH---HHHHHHhhC
Confidence 34568888 999999999 666555554
No 114
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=55.17 E-value=3.2 Score=43.68 Aligned_cols=28 Identities=11% Similarity=0.174 Sum_probs=21.5
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-...+++.|. |+||||||+ -.+.++.++
T Consensus 123 i~~Ge~vaIv----GpsGsGKST---Ll~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFI----GPPNTGKSM---LCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEE----CSSSSSHHH---HHHHHHHHH
T ss_pred ecCCCEEEEE----CCCCCcHHH---HHHHHhhhc
Confidence 4667889888 999999999 555555544
No 115
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=54.74 E-value=3.5 Score=39.20 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=19.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|++. |.+|||||+ -++.+...+
T Consensus 12 ~~~~i~l~----G~~GsGKsT---~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLT----GLPGSGKTT---IATRLADLL 37 (186)
T ss_dssp CCEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCcEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 34567777 999999999 666665555
No 116
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=54.73 E-value=4.4 Score=46.42 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=28.7
Q ss_pred CCCCcchh---hhHHHHHHhh-hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 34 ELPPHIFA---IGDNGYTHMK-RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 34 ~~~PHi~~---~a~~ay~~~~-~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+||-|. |+......+. ..+....|+|. |-||||||+ .++.+-+.|
T Consensus 370 ~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~----GlsGSGKST---iA~~La~~L 420 (573)
T 1m8p_A 370 AHIPEWFSYPEVVKILRESNPPRATQGFTIFLT----GYMNSGKDA---IARALQVTL 420 (573)
T ss_dssp CCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CCCCcccccccccHHHHHhcccccccceEEEee----cCCCCCHHH---HHHHHHHHh
Confidence 34555555 4433332331 23445667777 999999999 776666655
No 117
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=54.72 E-value=3.1 Score=38.78 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=16.5
Q ss_pred eEEEeecCcccccccccccccccccchhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
..|+|. |.+|||||+ -++.+.+
T Consensus 3 ~~I~i~----G~~GsGKST---~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTI----GCPGSGKST---WAREFIA 24 (181)
T ss_dssp EEEEEE----CCTTSSHHH---HHHHHHH
T ss_pred eEEEEe----cCCCCCHHH---HHHHHHh
Confidence 457788 999999999 5555444
No 118
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=54.69 E-value=2.9 Score=41.30 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=19.0
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|+|. |-+|||||+ -++.+.+.+
T Consensus 7 ~~~I~l~----G~~GsGKsT---~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIM----GAPGSGKGT---VSSRITTHF 31 (227)
T ss_dssp CCEEEEE----ECTTSSHHH---HHHHHHHHS
T ss_pred CcEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 4568888 999999999 666555444
No 119
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=54.65 E-value=3 Score=39.41 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=18.9
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|++. |.+|||||+ -++.+.+.+
T Consensus 4 g~~I~l~----G~~GsGKST---~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFL----GPPGAGKGT---QASRLAQEL 28 (186)
T ss_dssp EEEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3467888 999999999 666665544
No 120
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=54.59 E-value=3.4 Score=41.80 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=19.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|.|. |.||||||+ -++.+.+.|
T Consensus 26 ~g~~I~I~----G~~GsGKST---l~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVD----GPSGAGKGT---LCKALAESL 51 (252)
T ss_dssp TSCEEEEE----CCTTSSHHH---HHHHHHHHT
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 34578888 999999999 666666443
No 121
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=54.56 E-value=8.2 Score=36.98 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy14295 684 WAIVKIQAHVRRMIAQRHYQK 704 (750)
Q Consensus 684 ~Aai~IQs~~R~~~aRr~y~~ 704 (750)
.||.+||++||.++.|+.++.
T Consensus 131 ~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 131 VSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 467777777777776665544
No 122
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=54.39 E-value=4.7 Score=42.60 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=22.5
Q ss_pred hhhcCCCe--EEEeecCcccccccccccccccccchhhhh
Q psy14295 50 MKRFGQDQ--CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 50 ~~~~~~~Q--sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
......+. +++|. |++|+|||. .++.+.+.+
T Consensus 36 ~~~~~~~~~~~~li~----G~~G~GKTt---l~~~l~~~~ 68 (389)
T 1fnn_A 36 WLRNPGHHYPRATLL----GRPGTGKTV---TLRKLWELY 68 (389)
T ss_dssp HHHSTTSSCCEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred HHcCCCCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 33345566 89999 999999999 666555544
No 123
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.39 E-value=3.4 Score=43.34 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.|.|. |+||||||+ ..+.+..++
T Consensus 101 ~g~vi~lv----G~nGsGKTT---ll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVV----GVNGVGKTT---TIAKLGRYY 126 (304)
T ss_dssp SSSEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CCeEEEEE----CCCCCcHHH---HHHHHHHHH
Confidence 45678787 999999999 776666655
No 124
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=54.33 E-value=3.6 Score=43.74 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....|.+. |++|||||+ ..+.+..++
T Consensus 127 ~~g~vi~lv----G~nGaGKTT---ll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFV----GFNGSGKTT---TIAKLANWL 153 (328)
T ss_dssp CSSEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 456778787 999999999 777766666
No 125
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.29 E-value=2.9 Score=39.60 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=17.9
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|. |.+|||||+ -++.+-+.+
T Consensus 4 ~I~l~----G~~GsGKsT---~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLV----GLPGSGKST---IGRRLAKAL 26 (184)
T ss_dssp SEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred eEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 47788 999999999 666665544
No 126
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=54.28 E-value=2.9 Score=39.37 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=17.8
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|+|. |.+|||||+ -++.+-+.+
T Consensus 6 ~i~i~----G~~GsGKsT---la~~La~~l 28 (175)
T 1via_A 6 NIVFI----GFMGSGKST---LARALAKDL 28 (175)
T ss_dssp CEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred EEEEE----cCCCCCHHH---HHHHHHHHc
Confidence 47888 999999999 666655543
No 127
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=54.23 E-value=7.4 Score=37.18 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=31.8
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 12 PYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 12 P~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.|..+++ +++..+.........+.|| =.+|+..+... +.+++. +++|+|||.
T Consensus 4 ~f~~~~l-~~~l~~~l~~~g~~~~~~~----Q~~~i~~~~~~---~~~lv~----apTGsGKT~ 55 (206)
T 1vec_A 4 EFEDYCL-KRELLMGIFEMGWEKPSPI----QEESIPIALSG---RDILAR----AKNGTGKSG 55 (206)
T ss_dssp SGGGSCC-CHHHHHHHHTTTCCSCCHH----HHHHHHHHHTT---CCEEEE----CCSSSTTHH
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCCHH----HHHHHHHHccC---CCEEEE----CCCCCchHH
Confidence 4566665 5666666665443333332 34555555543 457788 999999998
No 128
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=54.17 E-value=3 Score=39.22 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=14.2
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|. |.+|||||+ -++.+-+.+
T Consensus 6 ~~I~l~----G~~GsGKST---~a~~La~~l 29 (183)
T 2vli_A 6 PIIWIN----GPFGVGKTH---TAHTLHERL 29 (183)
T ss_dssp CEEEEE----CCC----CH---HHHHHHHHS
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 468888 999999999 666555444
No 129
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=54.14 E-value=2.8 Score=47.42 Aligned_cols=46 Identities=13% Similarity=-0.036 Sum_probs=33.2
Q ss_pred CCCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 33 GELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 33 ~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-++|+|..+..++|..- .+....|+++ |-||||||+ .++.+-+.|
T Consensus 374 ~f~rpeV~~vLr~~~~~~--~~~~~~I~l~----GlsGsGKST---Ia~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPR--PKQGFSIVLG----NSLTVSREQ---LSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCG--GGCCEEEEEC----TTCCSCHHH---HHHHHHHHH
T ss_pred cccChhhHHHHHHhcccc--cccceEEEec----ccCCCCHHH---HHHHHHHHH
Confidence 346677877777766322 2334678888 999999999 888777777
No 130
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=53.70 E-value=3.9 Score=43.31 Aligned_cols=33 Identities=3% Similarity=-0.161 Sum_probs=27.5
Q ss_pred HHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 48 THMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 48 ~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.....+.+-+|+|+ |.+|+|||. .++.+++-|
T Consensus 37 ~~~i~~~~~~~lli~----GpPGTGKT~---~v~~v~~~L 69 (318)
T 3te6_A 37 YDSLMSSQNKLFYIT----NADDSTKFQ---LVNDVMDEL 69 (318)
T ss_dssp HHHHHTTCCCEEEEE----CCCSHHHHH---HHHHHHHHH
T ss_pred HHHhcCCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 344557889999999 999999999 888887777
No 131
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=53.63 E-value=3 Score=39.70 Aligned_cols=22 Identities=27% Similarity=0.287 Sum_probs=17.2
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |-+|||||+ -++.+.+.+
T Consensus 3 I~l~----G~~GsGKsT---~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFE----GIDGSGKST---QIQLLAQYL 24 (197)
T ss_dssp EEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 5666 999999999 666666655
No 132
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=53.49 E-value=3.5 Score=39.38 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.4
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
+...|.|+ |.+|||||+
T Consensus 7 ~~~~I~i~----G~~GsGKST 23 (203)
T 1uf9_A 7 HPIIIGIT----GNIGSGKST 23 (203)
T ss_dssp CCEEEEEE----ECTTSCHHH
T ss_pred CceEEEEE----CCCCCCHHH
Confidence 34568888 999999999
No 133
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=53.37 E-value=3 Score=39.99 Aligned_cols=23 Identities=9% Similarity=-0.211 Sum_probs=18.6
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|.|+ |.||||||+ -+..++..|
T Consensus 6 ~i~i~----G~sGsGKTT---l~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVV----GYKHSGKTT---LMEKWVAAA 28 (169)
T ss_dssp EEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHhh
Confidence 56777 999999999 777777666
No 134
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=53.35 E-value=5 Score=40.68 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=20.3
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
.....++++. |++|+|||. .++.+.+.
T Consensus 61 ~~~~~~vLl~----G~~GtGKT~---la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLE----GPPHSGKTA---LAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEE----CSTTSSHHH---HHHHHHHH
T ss_pred CCCCeEEEEE----CCCCCcHHH---HHHHHHHH
Confidence 4566789998 999999999 55554443
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.26 E-value=3.3 Score=43.64 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=21.5
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..++++|. |++|+|||. -++.+.+.+
T Consensus 42 ~~~~~~vli~----G~~G~GKTt---l~~~l~~~~ 69 (386)
T 2qby_A 42 EEKPNNIFIY----GLTGTGKTA---VVKFVLSKL 69 (386)
T ss_dssp TCCCCCEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred CCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 5667899999 999999999 555544433
No 136
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=53.04 E-value=4 Score=42.07 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=23.5
Q ss_pred HHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 48 THMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 48 ~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+...+....+++. |++|+|||. .++.+.+.+
T Consensus 38 ~~~l~~~~~~~~ll~----G~~G~GKT~---la~~l~~~l 70 (327)
T 1iqp_A 38 KHYVKTGSMPHLLFA----GPPGVGKTT---AALALAREL 70 (327)
T ss_dssp HHHHHHTCCCEEEEE----SCTTSSHHH---HHHHHHHHH
T ss_pred HHHHHcCCCCeEEEE----CcCCCCHHH---HHHHHHHHh
Confidence 344445555568888 999999999 776666554
No 137
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=52.88 E-value=2.9 Score=39.43 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=18.7
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|. |.+|||||+ -++.+.+.+
T Consensus 7 ~~I~l~----G~~GsGKsT---~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVL----GGPGSGKGT---QCANIVRDF 30 (194)
T ss_dssp EEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 467888 999999999 666665554
No 138
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=52.76 E-value=3.8 Score=42.91 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=20.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|.+. |++|||||+ ..+.+..++
T Consensus 99 ~g~vi~lv----G~nGsGKTT---ll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIV----GVNGGGKTT---SLGKLAHRL 124 (302)
T ss_dssp SCEEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred CCcEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 34677777 999999999 777666665
No 139
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=52.72 E-value=6.8 Score=38.83 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=21.8
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
++.+-+.+...+.. ++.+++. |++|||||+
T Consensus 62 ~~~~q~~~i~~i~~---g~~~~i~----g~TGsGKTt 91 (235)
T 3llm_A 62 VKKFESEILEAISQ---NSVVIIR----GATGCGKTT 91 (235)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEE----CCTTSSHHH
T ss_pred hHHHHHHHHHHHhc---CCEEEEE----eCCCCCcHH
Confidence 45555666655543 4678888 999999997
No 140
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.64 E-value=3.2 Score=44.01 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=20.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.+.|. |+||||||+ ..+.++.++
T Consensus 170 ~g~~v~i~----G~~GsGKTT---ll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVC----GGTGSGKTT---YIKSIMEFI 195 (330)
T ss_dssp HTCCEEEE----ESTTSCHHH---HHHHGGGGS
T ss_pred CCCEEEEE----CCCCCCHHH---HHHHHhCCC
Confidence 34678888 999999999 666666555
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=52.46 E-value=3.4 Score=43.57 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=22.5
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+...+++|. |++|+|||. .++.+.+.+
T Consensus 41 ~~~~~~vll~----G~~G~GKT~---l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLY----GLTGTGKTA---VARLVLRRL 68 (387)
T ss_dssp SCCCCCEEEC----BCTTSSHHH---HHHHHHHHH
T ss_pred CCCCCcEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4667899999 999999999 666666554
No 142
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=52.14 E-value=3.8 Score=42.61 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=15.9
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
--|.|+ |.||||||+ -++.+.+.+
T Consensus 6 ~iIgIt----G~sGSGKST---va~~L~~~l 29 (290)
T 1a7j_A 6 PIISVT----GSSGAGTST---VKHTFDQIF 29 (290)
T ss_dssp CEEEEE----SCC---CCT---HHHHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 357888 999999999 776666654
No 143
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=52.11 E-value=3.2 Score=40.33 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=16.8
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|+ |.+|||||+ -++.+.+.+
T Consensus 3 I~l~----G~~GsGKsT---~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLM----GLPGAGKGT---QAEQIIEKY 24 (216)
T ss_dssp EEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 6777 999999999 666554444
No 144
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=51.88 E-value=3.6 Score=40.05 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 23 ~~G~~~~l~----G~nGsGKST 40 (231)
T 4a74_A 23 ETQAITEVF----GEFGSGKTQ 40 (231)
T ss_dssp ESSEEEEEE----ESTTSSHHH
T ss_pred CCCcEEEEE----CCCCCCHHH
Confidence 356788888 999999999
No 145
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=51.84 E-value=7.7 Score=40.74 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=35.9
Q ss_pred EcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 10 VNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 10 vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+++|..+++ +++..+......... | +.+=..|+..+... .+..+|+. +++|+|||.
T Consensus 4 ~~~f~~~~l-~~~l~~~l~~~~~~~--~--~~~Q~~~i~~~~~~-~~~~~lv~----a~TGsGKT~ 59 (395)
T 3pey_A 4 AKSFDELGL-APELLKGIYAMKFQK--P--SKIQERALPLLLHN-PPRNMIAQ----SQSGTGKTA 59 (395)
T ss_dssp CCSSTTSCC-CHHHHHHHHHTTCCS--C--CHHHHHHHHHHHCS-SCCCEEEE----CCTTSCHHH
T ss_pred ccCHhhCCC-CHHHHHHHHHCCCCC--C--CHHHHHHHHHHHcC-CCCeEEEE----CCCCCcHHH
Confidence 478888886 556666555443322 3 33334566666544 34678888 999999998
No 146
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=51.53 E-value=3.9 Score=41.16 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 29 ~~Ge~~~i~----G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVV----GQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEE----CSTTSSHHH
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 456788887 999999999
No 147
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=51.47 E-value=3.4 Score=39.10 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=16.8
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |-+|||||+ -++.+.+.+
T Consensus 3 I~l~----G~~GsGKsT---~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFE----GIDGSGKTT---QAKKLYEYL 24 (195)
T ss_dssp EEEE----CSTTSCHHH---HHHHHHHHH
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 6677 999999999 666655544
No 148
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=51.45 E-value=4.2 Score=40.70 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
.....|-|. |.+|||||+
T Consensus 23 ~~g~iigI~----G~~GsGKST 40 (245)
T 2jeo_A 23 MRPFLIGVS----GGTASGKST 40 (245)
T ss_dssp CCSEEEEEE----CSTTSSHHH
T ss_pred CCCEEEEEE----CCCCCCHHH
Confidence 345667777 999999999
No 149
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.28 E-value=3.2 Score=39.52 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=19.7
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|+|. |.+|||||+ -++.+.+.+
T Consensus 12 ~~~I~l~----G~~GsGKsT---~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFII----GGPGSGKGT---QCEKLVEKY 36 (199)
T ss_dssp SCEEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3468888 999999999 777666655
No 150
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=51.17 E-value=4.1 Score=40.84 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=18.8
Q ss_pred CCeEEEeecCcccccccccccccccccchhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
.+..|+|. |++|+|||. .++.+...
T Consensus 44 ~~~~vll~----G~~GtGKT~---la~~la~~ 68 (257)
T 1lv7_A 44 IPKGVLMV----GPPGTGKTL---LAKAIAGE 68 (257)
T ss_dssp CCCEEEEE----CCTTSCHHH---HHHHHHHH
T ss_pred CCCeEEEE----CcCCCCHHH---HHHHHHHH
Confidence 45678888 999999999 55544443
No 151
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=51.04 E-value=4 Score=38.73 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=19.5
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+|. |.+|||||+ -++.+.+.+
T Consensus 9 ~~~I~l~----G~~GsGKsT---~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVV----GGPGSGKGT---QCEKIVQKY 33 (196)
T ss_dssp SCEEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 4578888 999999999 666665555
No 152
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=50.99 E-value=3.5 Score=39.63 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=18.6
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|. |-+|||||+ -++.+.+.+
T Consensus 5 ~~I~i~----G~~GsGKsT---~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFE----GIDGSGKSS---QATLLKDWI 28 (213)
T ss_dssp EEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred eEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 457777 999999999 666665555
No 153
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=50.85 E-value=4 Score=41.67 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 44 ~~Ge~~~i~----G~nGsGKST 61 (260)
T 2ghi_A 44 PSGTTCALV----GHTGSGKST 61 (260)
T ss_dssp CTTCEEEEE----CSTTSSHHH
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 566788888 999999999
No 154
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=50.61 E-value=3.5 Score=39.53 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=17.8
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|.|+ |.+|||||+ -++.+...+
T Consensus 4 ~i~i~----G~~GsGKst---~~~~la~~l 26 (208)
T 3ake_A 4 IVTID----GPSASGKSS---VARRVAAAL 26 (208)
T ss_dssp EEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 57788 999999999 666655544
No 155
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=50.43 E-value=3.5 Score=40.16 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=16.7
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|+ |.+|||||+ -++.+.+.+
T Consensus 3 I~l~----G~~GsGKsT---~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLM----GLPGAGKGT---QGERIVEKY 24 (216)
T ss_dssp EEEE----CSTTSSHHH---HHHHHHHHS
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 6777 999999999 666554444
No 156
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=50.41 E-value=3.3 Score=43.58 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=19.4
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+.|. |+||||||+ -.+.++.++
T Consensus 78 ~~Ge~vaiv----G~sGsGKST---Ll~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALV----GPSGAGKST---ILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEE----SSSCHHHHH---HHHHHTTSS
T ss_pred cCCCEEEEE----CCCCchHHH---HHHHHHcCC
Confidence 456777777 999999999 555444444
No 157
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=50.25 E-value=4 Score=41.36 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.8
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 33 ~~Ge~~~i~----G~nGsGKST 50 (247)
T 2ff7_A 33 KQGEVIGIV----GRSGSGKST 50 (247)
T ss_dssp ETTCEEEEE----CSTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 345677777 999999999
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=50.23 E-value=4 Score=40.28 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 28 ~~G~~~~l~----GpnGsGKST 45 (251)
T 2ehv_A 28 PEGTTVLLT----GGTGTGKTT 45 (251)
T ss_dssp ETTCEEEEE----CCTTSSHHH
T ss_pred CCCcEEEEE----eCCCCCHHH
Confidence 456788888 999999999
No 159
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=49.90 E-value=4.4 Score=40.84 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 26 ~~Ge~~~i~----G~nGsGKST 43 (243)
T 1mv5_A 26 QPNSIIAFA----GPSGGGKST 43 (243)
T ss_dssp CTTEEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 566788888 999999999
No 160
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=49.82 E-value=6.7 Score=41.87 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=19.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..|++. |++|+|||. .++.+-+.+
T Consensus 71 ~~~~ill~----Gp~GtGKT~---la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLI----GPTGSGKTL---MAQTLAKHL 96 (376)
T ss_dssp CCCCEEEE----CCTTSSHHH---HHHHHHHHT
T ss_pred CCCCEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 45689888 999999999 665554444
No 161
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=49.77 E-value=4.5 Score=40.33 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=20.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+..|++. |++|+|||. .++.+.+.+
T Consensus 37 ~~~~~vll~----G~~GtGKT~---la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLL----GPPGCGKTL---LAKAVATEA 63 (262)
T ss_dssp CCCCEEEEE----SCTTSSHHH---HHHHHHHHH
T ss_pred CCCceEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 456789998 999999999 666555443
No 162
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=49.67 E-value=3.5 Score=40.42 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=19.2
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|. |.+|||||+ -++.+.+.+
T Consensus 6 ~~I~l~----G~~GsGKsT---~~~~La~~l 29 (222)
T 1zak_A 6 LKVMIS----GAPASGKGT---QCELIKTKY 29 (222)
T ss_dssp CCEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 457888 999999999 777766665
No 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=49.56 E-value=3.8 Score=38.71 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=18.3
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
--|+|. |.+|||||+ -++.+.+.+
T Consensus 4 ~~I~l~----G~~GsGKsT---~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVL----GGPGAGKGT---QCARIVEKY 27 (196)
T ss_dssp EEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 457777 999999999 666655554
No 164
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.52 E-value=3.7 Score=39.33 Aligned_cols=25 Identities=12% Similarity=-0.084 Sum_probs=18.4
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|+|. |-+|||||+ -++.+.+.+
T Consensus 4 ~~~I~l~----G~~GsGKsT---~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFE----GLDKSGKTT---QCMNIMESI 28 (204)
T ss_dssp CCEEEEE----CCTTSSHHH---HHHHHHHTS
T ss_pred CcEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 3467888 999999999 665555544
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.42 E-value=8.2 Score=40.51 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=21.7
Q ss_pred HhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 49 HMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 49 ~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.....++-..+++. |++|+|||+ .++.+.+.+
T Consensus 39 ~~i~~g~~~~~ll~----Gp~G~GKTt---la~~la~~l 70 (340)
T 1sxj_C 39 KFVDEGKLPHLLFY----GPPGTGKTS---TIVALAREI 70 (340)
T ss_dssp HHHHTTCCCCEEEE----CSSSSSHHH---HHHHHHHHH
T ss_pred HHHhcCCCceEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 33344432237777 999999999 777666665
No 166
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.41 E-value=3.9 Score=41.62 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=19.7
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+|. |.||||||+ -++.+...+
T Consensus 48 g~~i~l~----G~~GsGKST---l~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLV----GMMGSGKTT---VGKIMARSL 72 (250)
T ss_dssp TCCEEEE----CSTTSCHHH---HHHHHHHHH
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 5689888 999999999 666665544
No 167
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=49.30 E-value=3.6 Score=39.67 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=19.5
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|+|. |-+|||||+ -++.+.+.+
T Consensus 10 ~~~I~l~----G~~GsGKST---~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFE----GLDRSGKST---QSKLLVEYL 34 (212)
T ss_dssp SCEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CCEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 4568888 999999999 666666555
No 168
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=49.06 E-value=4.7 Score=38.79 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=20.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+..|+|. |.+|||||+ -++.+.+.+
T Consensus 18 ~~~~~I~l~----G~~GsGKST---~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLL----GPPGAGKGT---QAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCCeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 345578888 999999999 776666555
No 169
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=48.47 E-value=4.6 Score=41.26 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 30 ~~Ge~~~li----G~nGsGKST 47 (262)
T 1b0u_A 30 RAGDVISII----GSSGSGKST 47 (262)
T ss_dssp CTTCEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=48.32 E-value=4 Score=39.68 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.9
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|.|. |++|||||+ ..+.+...+
T Consensus 3 ~i~i~----G~nG~GKTT---ll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLT----GPPGVGKTT---LIHKASEVL 25 (189)
T ss_dssp CEEEE----SCCSSCHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCChHHH---HHHHHHhhc
Confidence 45566 999999999 777666666
No 171
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.12 E-value=4.5 Score=41.83 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=14.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 32 ~~Ge~~~ii----GpnGsGKST 49 (275)
T 3gfo_A 32 KRGEVTAIL----GGNGVGKST 49 (275)
T ss_dssp ETTSEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 445677777 999999999
No 172
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=48.09 E-value=5 Score=43.18 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=20.4
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|.+. |++|||||+ ..+.+..++
T Consensus 156 ~g~vi~lv----G~nGsGKTT---ll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIV----GVNGGGKTT---SLGKLAHRL 181 (359)
T ss_dssp SSEEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred CCeEEEEE----cCCCChHHH---HHHHHHhhc
Confidence 45677777 999999999 777666666
No 173
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=47.98 E-value=4.8 Score=41.42 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=15.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 43 ~~Ge~~~i~----G~nGsGKST 60 (271)
T 2ixe_A 43 YPGKVTALV----GPNGSGKST 60 (271)
T ss_dssp CTTCEEEEE----CSTTSSHHH
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 556778777 999999999
No 174
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=47.93 E-value=6.3 Score=39.67 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=18.9
Q ss_pred CCeEEEeecCcccccccccccccccccchhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
.+..|+|. ||+|+|||. .++.+-+.
T Consensus 28 ~~~~vll~----G~~GtGKt~---la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLII----GERGTGKEL---IASRLHYL 52 (265)
T ss_dssp SCSCEEEE----CCTTSCHHH---HHHHHHHT
T ss_pred CCCCEEEE----CCCCCcHHH---HHHHHHHh
Confidence 45789998 999999999 55544443
No 175
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=47.75 E-value=11 Score=41.35 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=22.9
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
++.+=..|+..+... .++.+|+. |++|||||.
T Consensus 115 p~~~Q~~ai~~il~~-~~~~~l~~----a~TGsGKT~ 146 (479)
T 3fmp_B 115 PSKIQENALPLMLAE-PPQNLIAQ----SQSGTGKTA 146 (479)
T ss_dssp CCHHHHHHHHHHTSB-SCCEEEEE----CCSSSSHHH
T ss_pred CCHHHHHHHHHHHcC-CCCcEEEE----cCCCCchhH
Confidence 344445566666553 45788888 999999998
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=47.74 E-value=15 Score=38.89 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=19.4
Q ss_pred CCCeEEEeecCcccccccccccccccccchhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
+.+..|+|. |++|+|||. .++.+.+
T Consensus 115 ~~~~~vLl~----GppGtGKT~---la~aia~ 139 (357)
T 3d8b_A 115 GPPKGILLF----GPPGTGKTL---IGKCIAS 139 (357)
T ss_dssp SCCSEEEEE----SSTTSSHHH---HHHHHHH
T ss_pred CCCceEEEE----CCCCCCHHH---HHHHHHH
Confidence 457789999 999999999 5554443
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=47.73 E-value=12 Score=39.37 Aligned_cols=28 Identities=11% Similarity=0.091 Sum_probs=21.6
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.+..+++. |++|+|||. .++.+.+.+
T Consensus 35 ~~~~~~~ll~----G~~G~GKT~---la~~la~~l 62 (373)
T 1jr3_A 35 GRIHHAYLFS----GTRGVGKTS---IARLLAKGL 62 (373)
T ss_dssp TCCCSEEEEE----SCTTSSHHH---HHHHHHHHH
T ss_pred CCCCeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 4456788898 999999999 666665555
No 178
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.71 E-value=4.7 Score=42.36 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.0
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
..++|+ |.+|||||+
T Consensus 5 ~v~~i~----G~~GaGKTT 19 (318)
T 1nij_A 5 AVTLLT----GFLGAGKTT 19 (318)
T ss_dssp EEEEEE----ESSSSSCHH
T ss_pred cEEEEE----ecCCCCHHH
Confidence 456788 999999999
No 179
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=47.36 E-value=4.6 Score=41.45 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=14.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 35 ~~Ge~~~li----G~nGsGKST 52 (266)
T 4g1u_C 35 ASGEMVAII----GPNGAGKST 52 (266)
T ss_dssp ETTCEEEEE----CCTTSCHHH
T ss_pred cCCCEEEEE----CCCCCcHHH
Confidence 345667676 999999999
No 180
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=47.17 E-value=5 Score=41.14 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 48 ~~Gei~~li----G~NGsGKST 65 (263)
T 2olj_A 48 REGEVVVVI----GPSGSGKST 65 (263)
T ss_dssp CTTCEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----cCCCCcHHH
Confidence 456777777 999999999
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=47.08 E-value=5.2 Score=40.95 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=20.0
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.+|++. |++|+|||. .++.+...+
T Consensus 53 ~~~~vll~----Gp~GtGKT~---la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLF----GPPGNGKTL---LARAVATEC 78 (297)
T ss_dssp CCSEEEEE----SSSSSCHHH---HHHHHHHHT
T ss_pred CCCeEEEE----CcCCCCHHH---HHHHHHHHh
Confidence 46789999 999999999 665554433
No 182
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=46.90 E-value=4.6 Score=40.20 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 28 ~~Ge~~~ii----G~nGsGKST 45 (224)
T 2pcj_A 28 KKGEFVSII----GASGSGKST 45 (224)
T ss_dssp ETTCEEEEE----ECTTSCHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 345667677 999999999
No 183
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=46.75 E-value=6.6 Score=43.48 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 45 NGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 45 ~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+...+.-.++++. |++|+|||. .++.+.+.+
T Consensus 39 ~~L~~~i~~~~~~~vLL~----GppGtGKTt---lAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILW----GPPGTGKTT---LAEVIARYA 74 (447)
T ss_dssp SHHHHHHHHTCCCEEEEE----CSTTSSHHH---HHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEE----CCCCCcHHH---HHHHHHHHh
Confidence 345566666666889998 999999999 666555544
No 184
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=46.72 E-value=5.1 Score=38.59 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=20.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+--|+|. |-+|||||+ -++.+.+.+
T Consensus 8 ~~~~I~l~----G~~GsGKsT---~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLE----GVDRAGKST---QSRKLVEAL 33 (215)
T ss_dssp CCCEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 34578888 999999999 776666655
No 185
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=46.68 E-value=5.5 Score=37.88 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=18.5
Q ss_pred CeEEEeecCcccccccccccccccccchhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
...|+|+ |.+|||||+ -++.+-+.
T Consensus 10 ~~~I~l~----G~~GsGKST---v~~~La~~ 33 (184)
T 1y63_A 10 GINILIT----GTPGTGKTS---MAEMIAAE 33 (184)
T ss_dssp SCEEEEE----CSTTSSHHH---HHHHHHHH
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHHh
Confidence 4568888 999999999 66555544
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.67 E-value=6 Score=41.47 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=17.5
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+++. |++|+|||+ .++.+.+.+
T Consensus 39 ~ll~----Gp~G~GKTt---l~~~la~~l 60 (354)
T 1sxj_E 39 LLLY----GPNGTGKKT---RCMALLESI 60 (354)
T ss_dssp EEEE----CSTTSSHHH---HHHTHHHHH
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHH
Confidence 8888 999999999 666666544
No 187
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=46.57 E-value=5.4 Score=38.26 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=18.8
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|+|. |-+|||||+ -++.+.+.+
T Consensus 15 ~~~I~l~----G~~GsGKsT---~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVL----GGPGAGKGT---QCEKLVKDY 39 (203)
T ss_dssp CEEEEEE----CSTTSSHHH---HHHHHHHHS
T ss_pred CcEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 3467888 999999999 666655544
No 188
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=46.52 E-value=5 Score=40.53 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
.. +.+.|. |+||||||+
T Consensus 23 ~~-e~~~li----G~nGsGKST 39 (240)
T 2onk_A 23 GR-DYCVLL----GPTGAGKSV 39 (240)
T ss_dssp CS-SEEEEE----CCTTSSHHH
T ss_pred CC-EEEEEE----CCCCCCHHH
Confidence 45 677777 999999999
No 189
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.14 E-value=5.1 Score=40.79 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=14.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 31 ~~Ge~~~li----G~nGsGKST 48 (257)
T 1g6h_A 31 NKGDVTLII----GPNGSGKST 48 (257)
T ss_dssp ETTCEEEEE----CSTTSSHHH
T ss_pred eCCCEEEEE----CCCCCCHHH
Confidence 345677777 999999999
No 190
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=46.12 E-value=7.3 Score=42.91 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHhhhcCC-CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 46 GYTHMKRFGQ-DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 46 ay~~~~~~~~-~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+...+..... ..+++|. |++|+|||. -++.+..++
T Consensus 119 ~~~~~a~~~~~~~~lll~----Gp~G~GKTt---La~aia~~l 154 (440)
T 2z4s_A 119 AALEVAKHPGRYNPLFIY----GGVGLGKTH---LLQSIGNYV 154 (440)
T ss_dssp HHHHHHHSTTSSCCEEEE----CSSSSSHHH---HHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3334444332 6789998 999999999 666555554
No 191
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=45.90 E-value=5.1 Score=40.07 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=17.9
Q ss_pred CCeEEEeecCcccccccccccccccccchhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
.+..++|. |++|+|||+ -++.+...
T Consensus 48 ~~~g~ll~----G~~G~GKTt---l~~~i~~~ 72 (254)
T 1ixz_A 48 IPKGVLLV----GPPGVGKTH---LARAVAGE 72 (254)
T ss_dssp CCSEEEEE----CCTTSSHHH---HHHHHHHH
T ss_pred CCCeEEEE----CCCCCCHHH---HHHHHHHH
Confidence 34558888 999999999 55544443
No 192
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=45.82 E-value=4.7 Score=40.86 Aligned_cols=23 Identities=9% Similarity=-0.049 Sum_probs=17.1
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|+ |.+|||||+ -++.+.+.+
T Consensus 3 li~I~----G~~GSGKST---la~~La~~~ 25 (253)
T 2ze6_A 3 LHLIY----GPTCSGKTD---MAIQIAQET 25 (253)
T ss_dssp EEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCcCHHH---HHHHHHhcC
Confidence 46778 999999999 665554444
No 193
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=45.81 E-value=7 Score=41.50 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=32.7
Q ss_pred EEcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 9 AVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 9 ~vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.+.+|..+++ ++...+......... |.. +=..|+..+... .++.+|+. +++|+|||.
T Consensus 23 ~~~~f~~~~l-~~~l~~~l~~~g~~~--~~~--~Q~~~i~~~~~~-~~~~~lv~----apTGsGKT~ 79 (412)
T 3fht_A 23 SVKSFEELRL-KPQLLQGVYAMGFNR--PSK--IQENALPLMLAE-PPQNLIAQ----SQSGTGKTA 79 (412)
T ss_dssp CSSCTGGGTC-CHHHHHHHHHTTCCS--CCH--HHHHHHHHHHSS-SCCCEEEE----CCTTSCHHH
T ss_pred ccCCHhhCCC-CHHHHHHHHHcCCCC--CCH--HHHHHHHHHhcC-CCCeEEEE----CCCCchHHH
Confidence 3455555554 445555444433322 332 334455555543 45678888 999999998
No 194
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=45.63 E-value=5.2 Score=39.93 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=15.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 32 ~~Ge~~~i~----G~nGsGKST 49 (229)
T 2pze_A 32 ERGQLLAVA----GSTGAGKTS 49 (229)
T ss_dssp ETTCEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 195
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=45.55 E-value=5.9 Score=40.62 Aligned_cols=25 Identities=8% Similarity=0.052 Sum_probs=19.3
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+++. |++|+|||. .++.+.+.+
T Consensus 47 ~~~~ll~----G~~GtGKt~---la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFL----GPTGVGKTE---LAKTLAATL 71 (311)
T ss_dssp SEEEEEE----SCSSSSHHH---HHHHHHHHH
T ss_pred ceEEEEE----CCCCcCHHH---HHHHHHHHH
Confidence 3578888 999999999 666655554
No 196
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=45.50 E-value=7.3 Score=46.26 Aligned_cols=54 Identities=24% Similarity=0.443 Sum_probs=32.4
Q ss_pred EcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 10 VNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 10 vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+|||..+++ ++...+...... .+|-.+. +.+....... ++.+++. |++|||||+
T Consensus 71 ~~~f~~~~l-~~~~~~~l~~r~--~lP~~~q---~~~i~~~l~~--~~~vii~----gpTGSGKTt 124 (773)
T 2xau_A 71 INPFTGREF-TPKYVDILKIRR--ELPVHAQ---RDEFLKLYQN--NQIMVFV----GETGSGKTT 124 (773)
T ss_dssp BCTTTCSBC-CHHHHHHHHHHT--TSGGGGG---HHHHHHHHHH--CSEEEEE----CCTTSSHHH
T ss_pred CCCccccCC-CHHHHHHHHHhh--cCChHHH---HHHHHHHHhC--CCeEEEE----CCCCCCHHH
Confidence 577777765 555555544332 4443333 3333333333 4678888 999999998
No 197
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=45.45 E-value=4.5 Score=39.46 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=13.1
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
-.|+|. |.+|||||+
T Consensus 5 ~~I~i~----G~~GSGKST 19 (218)
T 1vht_A 5 YIVALT----GGIGSGKST 19 (218)
T ss_dssp EEEEEE----CCTTSCHHH
T ss_pred eEEEEE----CCCCCCHHH
Confidence 457788 999999999
No 198
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=45.36 E-value=5.1 Score=42.30 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=16.7
Q ss_pred CCeEEEeecCcccccccccccccccccchh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLST 84 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l 84 (750)
....++|. |+||+|||+ .+..++
T Consensus 146 ~g~gvli~----G~sG~GKSt---lal~l~ 168 (312)
T 1knx_A 146 FGVGVLLT----GRSGIGKSE---CALDLI 168 (312)
T ss_dssp TTEEEEEE----ESSSSSHHH---HHHHHH
T ss_pred CCEEEEEE----cCCCCCHHH---HHHHHH
Confidence 34677777 999999998 554433
No 199
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=45.30 E-value=4.8 Score=39.94 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=14.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 33 ~~Ge~~~ii----G~NGsGKST 50 (214)
T 1sgw_A 33 EKGNVVNFH----GPNGIGKTT 50 (214)
T ss_dssp ETTCCEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 345667777 999999999
No 200
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=45.23 E-value=13 Score=38.51 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=32.9
Q ss_pred HHHHhhcCCCCCCCCcchhhhHHHHHHhhh-cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 23 QIKLYKDKKIGELPPHIFAIGDNGYTHMKR-FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 23 ~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~-~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+|+-....++.-|--. -...+.+.. .+.+..+++. |++|+|||. .++.+.+.+
T Consensus 16 ~~~k~rP~~~~~ivg~~~~--~~~l~~~l~~~~~~~~~L~~----G~~G~GKT~---la~~la~~l 72 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFD--KETFKSITSKGKIPHIILHS----PSPGTGKTT---VAKALCHDV 72 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHH--HHHHHHHHHTTCCCSEEEEC----SSTTSSHHH---HHHHHHHHT
T ss_pred HHHhhCCCCHHHHhCcHHH--HHHHHHHHHcCCCCeEEEee----CcCCCCHHH---HHHHHHHHh
Confidence 4556665555555444221 223333433 4455677777 999999999 666655544
No 201
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=45.20 E-value=6.2 Score=38.91 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=21.1
Q ss_pred CCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 35 LPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 35 ~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
..|.-|.- ..++.++ ...+.+.|. |++|||||+
T Consensus 5 i~pk~~g~-~~~l~~i---~~Ge~~~li----G~nGsGKST 37 (208)
T 3b85_A 5 IRPKTLGQ-KHYVDAI---DTNTIVFGL----GPAGSGKTY 37 (208)
T ss_dssp CCCCSHHH-HHHHHHH---HHCSEEEEE----CCTTSSTTH
T ss_pred cccCCHhH-HHHHHhc---cCCCEEEEE----CCCCCCHHH
Confidence 34555532 2345554 335677777 999999999
No 202
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=45.20 E-value=8.5 Score=38.55 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=20.0
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+=.|+|+ |.+|||||+ -++.+.+.+
T Consensus 28 ~~~~I~l~----G~~GsGKsT---~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFL----GAPGSGKGT---QSLNLKKSH 53 (243)
T ss_dssp CCEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 44568888 999999999 776666544
No 203
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=44.92 E-value=5.3 Score=42.23 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=18.1
Q ss_pred CeEEEeecCcccccccccccccccccchhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
...++|. |+||+|||+ .+..++.
T Consensus 144 g~~vl~~----G~sG~GKSt---~a~~l~~ 166 (314)
T 1ko7_A 144 GVGVLIT----GDSGIGKSE---TALELIK 166 (314)
T ss_dssp TEEEEEE----ESTTSSHHH---HHHHHHH
T ss_pred CEEEEEE----eCCCCCHHH---HHHHHHh
Confidence 5788888 999999999 6655554
No 204
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=44.80 E-value=5.7 Score=42.25 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=20.0
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..|++. |++|+|||. .++.+-+.+
T Consensus 50 ~~~~vll~----GppGtGKT~---la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLI----GPTGSGKTL---LAETLARLL 75 (363)
T ss_dssp CCCCEEEE----CCTTSSHHH---HHHHHHHHT
T ss_pred CCCeEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 45678888 999999999 666655544
No 205
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=44.75 E-value=4.7 Score=38.89 Aligned_cols=14 Identities=36% Similarity=0.442 Sum_probs=11.8
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
.|.|. |.+|||||+
T Consensus 4 ~i~l~----G~~GsGKST 17 (206)
T 1jjv_A 4 IVGLT----GGIGSGKTT 17 (206)
T ss_dssp EEEEE----CSTTSCHHH
T ss_pred EEEEE----CCCCCCHHH
Confidence 35666 999999999
No 206
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=44.67 E-value=6.9 Score=41.24 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=20.5
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+++. |++|+|||. .++.+.+.+
T Consensus 70 ~~~vLl~----GppGtGKT~---la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIA----GQPGTGKTA---IAMGMAQAL 94 (368)
T ss_dssp TCEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CCEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3789999 999999999 776666655
No 207
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=44.53 E-value=4.7 Score=39.27 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=17.2
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.+|||||+ -++.+.+.+
T Consensus 3 I~l~----G~~GsGKsT---~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILL----GAPVAGKGT---QAQFIMEKY 24 (214)
T ss_dssp EEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 6777 999999999 666665544
No 208
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=44.34 E-value=5.9 Score=40.55 Aligned_cols=18 Identities=22% Similarity=0.678 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 31 ~~Ge~~~li----G~nGsGKST 48 (266)
T 2yz2_A 31 NEGECLLVA----GNTGSGKST 48 (266)
T ss_dssp CTTCEEEEE----CSTTSSHHH
T ss_pred cCCCEEEEE----CCCCCcHHH
Confidence 456777777 999999999
No 209
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=44.24 E-value=5.8 Score=40.70 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=21.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+....|+|. |++|+|||. .++.+.+.+
T Consensus 65 ~~~~~vll~----G~~GtGKT~---la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFT----GNPGTGKTT---VALKMAGLL 91 (309)
T ss_dssp CCCCEEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred CCCceEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 455678988 999999999 777666666
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=44.21 E-value=4.8 Score=38.70 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=15.3
Q ss_pred EEEeecCcccccccccccccccccchhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
.|.|. |.+|||||+ -++.+..
T Consensus 3 ~i~i~----G~~GsGKST---l~~~L~~ 23 (204)
T 2if2_A 3 RIGLT----GNIGCGKST---VAQMFRE 23 (204)
T ss_dssp EEEEE----ECTTSSHHH---HHHHHHH
T ss_pred EEEEE----CCCCcCHHH---HHHHHHH
Confidence 46777 999999999 4444433
No 211
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.17 E-value=13 Score=43.77 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHhhcCCCCCCCCcch--hhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 15 ILPIYTAEQIKLYKDKKIGELPPHIF--AIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 15 ~~~~y~~~~~~~y~~~~~~~~~PHi~--~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.-|+....+.|+.... .|-|- ....+ ...++..+....+++. |++|+|||. .++.+.+.+
T Consensus 168 ~l~~~~~~l~~~~~~~~~---d~~iGr~~~i~~-l~~~l~~~~~~~vlL~----G~~GtGKT~---la~~la~~l 231 (758)
T 1r6b_X 168 RLENFTTNLNQLARVGGI---DPLIGREKELER-AIQVLCRRRKNNPLLV----GESGVGKTA---IAEGLAWRI 231 (758)
T ss_dssp -CCSSSCBHHHHHHTTCS---CCCCSCHHHHHH-HHHHHTSSSSCEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred HHHHHhHhHHHHHhcCCC---CCccCCHHHHHH-HHHHHhccCCCCeEEE----cCCCCCHHH---HHHHHHHHH
Confidence 344566666666664433 33221 11111 2233344567788888 999999999 666665554
No 212
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.98 E-value=5.7 Score=40.20 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 27 ~~Ge~~~l~----G~nGsGKST 44 (250)
T 2d2e_A 27 PKGEVHALM----GPNGAGKST 44 (250)
T ss_dssp ETTCEEEEE----CSTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 345677777 999999999
No 213
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=43.86 E-value=6.1 Score=38.30 Aligned_cols=26 Identities=23% Similarity=0.070 Sum_probs=18.8
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....++|. |++|||||+ -++.+...+
T Consensus 22 ~G~~~~i~----G~~GsGKTt---l~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALT----GEPGTGKTI---FSLHFIAKG 47 (235)
T ss_dssp TTCEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CCCEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 45778888 999999999 555444333
No 214
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=43.78 E-value=7.2 Score=39.89 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=22.0
Q ss_pred hhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 50 MKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 50 ~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+...+....+++. |++|+|||. .++.+.+.+
T Consensus 32 ~l~~~~~~~~ll~----G~~G~GKt~---la~~l~~~l 62 (319)
T 2chq_A 32 YVERKNIPHLLFS----GPPGTGKTA---TAIALARDL 62 (319)
T ss_dssp TTTTTCCCCEEEE----SSSSSSHHH---HHHHHHHHH
T ss_pred HHhCCCCCeEEEE----CcCCcCHHH---HHHHHHHHh
Confidence 3334444458888 999999999 777666654
No 215
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.58 E-value=13 Score=38.53 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=23.0
Q ss_pred HHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 47 YTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 47 y~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.......+....+++. |++|+|||. .++.+.+.+
T Consensus 49 l~~~l~~~~~~~~ll~----G~~G~GKT~---la~~la~~l 82 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFY----GPPGTGKTS---TILALTKEL 82 (353)
T ss_dssp HHHHTTCTTCCCEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3334444433348888 999999999 777666665
No 216
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=43.48 E-value=6.2 Score=40.44 Aligned_cols=18 Identities=17% Similarity=0.160 Sum_probs=15.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 44 ~~Ge~~~l~----G~NGsGKST 61 (267)
T 2zu0_C 44 HPGEVHAIM----GPNGSGKST 61 (267)
T ss_dssp CTTCEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 217
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=43.46 E-value=6.4 Score=39.92 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=19.8
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
..+..++|. |++|+|||. .++.+...
T Consensus 49 ~~~~~~ll~----G~~GtGKT~---la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLY----GPPGTGKTL---LAKAVATE 74 (285)
T ss_dssp CCCSEEEEE----SSSSSSHHH---HHHHHHHH
T ss_pred CCCCeEEEE----CCCCCcHHH---HHHHHHHH
Confidence 456789999 999999999 55544433
No 218
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=43.19 E-value=10 Score=36.80 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=31.5
Q ss_pred cCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 11 NPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 11 NP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
..|..+++ +++..+......... | +.+=..|+..+... +.+++. +++|+|||.
T Consensus 4 ~~f~~~~l-~~~l~~~l~~~g~~~--~--~~~Q~~~i~~~~~~---~~~lv~----a~TGsGKT~ 56 (219)
T 1q0u_A 4 TQFTRFPF-QPFIIEAIKTLRFYK--P--TEIQERIIPGALRG---ESMVGQ----SQTGTGKTH 56 (219)
T ss_dssp CCGGGSCC-CHHHHHHHHHTTCCS--C--CHHHHHHHHHHHHT---CCEEEE----CCSSHHHHH
T ss_pred CCHhhCCC-CHHHHHHHHHCCCCC--C--CHHHHHHHHHHhCC---CCEEEE----CCCCChHHH
Confidence 45666664 566666665544333 3 22334445555443 457777 999999998
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=43.18 E-value=7.2 Score=38.59 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.5
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|+|. |.||+|||+ -+..+.+..
T Consensus 33 ~g~~ilI~----GpsGsGKSt---LA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLIT----GDSGVGKSE---TALELVQRG 58 (205)
T ss_dssp TTEEEEEE----CCCTTTTHH---HHHHHHTTT
T ss_pred CCEEEEEE----CCCCCCHHH---HHHHHHHhC
Confidence 35778888 999999998 655555444
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=43.17 E-value=6.6 Score=44.13 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=28.7
Q ss_pred cchhhhHHHHHHhhhc---------CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 38 HIFAIGDNGYTHMKRF---------GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 38 Hi~~~a~~ay~~~~~~---------~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..+..+....++.. ...+.|.|. |.+|||||+ ..+.+..++
T Consensus 266 ~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LV----GpNGSGKTT---Ll~~LAgll 317 (503)
T 2yhs_A 266 ALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMV----GVNGVGKTT---TIGKLARQF 317 (503)
T ss_dssp GHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEE----CCCcccHHH---HHHHHHHHh
Confidence 3555555555555432 345677777 999999999 777666665
No 221
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.04 E-value=6.3 Score=40.17 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 39 ~~Gei~~l~----G~NGsGKST 56 (256)
T 1vpl_A 39 EEGEIFGLI----GPNGAGKTT 56 (256)
T ss_dssp CTTCEEEEE----CCTTSSHHH
T ss_pred cCCcEEEEE----CCCCCCHHH
Confidence 456777777 999999999
No 222
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.62 E-value=6.2 Score=39.68 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 30 ~~Ge~~~l~----G~nGsGKST 47 (240)
T 1ji0_A 30 PRGQIVTLI----GANGAGKTT 47 (240)
T ss_dssp ETTCEEEEE----CSTTSSHHH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 345677777 999999999
No 223
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=42.57 E-value=10 Score=37.94 Aligned_cols=25 Identities=16% Similarity=-0.013 Sum_probs=17.6
Q ss_pred HHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 44 DNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 44 ~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
..|+..+... +.+++. +++|+|||.
T Consensus 71 ~~~i~~i~~~---~~~lv~----a~TGsGKT~ 95 (249)
T 3ber_A 71 IEAIPLALQG---RDIIGL----AETGSGKTG 95 (249)
T ss_dssp HHHHHHHHTT---CCEEEE----CCTTSCHHH
T ss_pred HHHHHHHhCC---CCEEEE----cCCCCCchh
Confidence 4455555432 557888 999999998
No 224
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=42.56 E-value=6.3 Score=40.07 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=14.7
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 29 ~~Ge~~~l~----G~nGsGKST 46 (253)
T 2nq2_C 29 NKGDILAVL----GQNGCGKST 46 (253)
T ss_dssp ETTCEEEEE----CCSSSSHHH
T ss_pred CCCCEEEEE----CCCCCCHHH
Confidence 345677777 999999999
No 225
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=42.37 E-value=6.8 Score=40.58 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=20.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+..|++. |++|+|||. .++.+...+
T Consensus 47 ~~~~~vLL~----Gp~GtGKT~---la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFY----GPPGCGKTL---LAKAIANEC 73 (301)
T ss_dssp CCCSEEEEE----CSSSSSHHH---HHHHHHHHT
T ss_pred CCCceEEEE----CCCCcCHHH---HHHHHHHHh
Confidence 456789998 999999999 555544433
No 226
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=42.35 E-value=5.7 Score=40.08 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=19.4
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+-.|.|. |.||||||+ -++.+.+.+
T Consensus 9 ~~~i~i~----G~~GsGKsT---la~~la~~l 33 (233)
T 3r20_A 9 SLVVAVD----GPAGTGKSS---VSRGLARAL 33 (233)
T ss_dssp CCEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3467788 999999999 777666554
No 227
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=42.31 E-value=6.5 Score=42.66 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.4
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 27 ~~Ge~~~ll----GpsGsGKST 44 (381)
T 3rlf_A 27 HEGEFVVFV----GPSGCGKST 44 (381)
T ss_dssp CTTCEEEEE----CCTTSSHHH
T ss_pred CCCCEEEEE----cCCCchHHH
Confidence 445666676 999999999
No 228
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=41.99 E-value=12 Score=35.71 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 14 QILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 14 ~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
..+++ +++..+.........+-| +=..++..+... +.+++. +++|+|||.
T Consensus 4 ~~~~l-~~~l~~~l~~~~~~~~~~----~Q~~~i~~~~~~---~~~li~----~~TGsGKT~ 53 (207)
T 2gxq_A 4 KDFPL-KPEILEALHGRGLTTPTP----IQAAALPLALEG---KDLIGQ----ARTGTGKTL 53 (207)
T ss_dssp GGSCC-CHHHHHHHHHTTCCSCCH----HHHHHHHHHHTT---CCEEEE----CCTTSCHHH
T ss_pred hhcCC-CHHHHHHHHHcCCCCCCH----HHHHHHHHHcCC---CCEEEE----CCCCChHHH
Confidence 34443 455555555443333223 334455555442 457777 999999998
No 229
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=41.90 E-value=16 Score=35.22 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=31.4
Q ss_pred EcCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 10 VNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 10 vNP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.++|+.+++ +++..+......... |..| =.+|+..+... ..+++. +++|+|||.
T Consensus 13 ~~~f~~~~l-~~~l~~~l~~~g~~~--~~~~--Q~~~i~~~~~~---~~~li~----~~TGsGKT~ 66 (220)
T 1t6n_A 13 SSGFRDFLL-KPELLRAIVDCGFEH--PSEV--QHECIPQAILG---MDVLCQ----AKSGMGKTA 66 (220)
T ss_dssp -CCSTTSCC-CHHHHHHHHHTTCCC--CCHH--HHHHHHHHHTT---CCEEEE----CCTTSCHHH
T ss_pred CCCHhhcCC-CHHHHHHHHHCCCCC--CCHH--HHHHHHHHhCC---CCEEEE----CCCCCchhh
Confidence 355777776 466666655443332 3333 24445555543 337777 899999998
No 230
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=41.82 E-value=5.8 Score=39.08 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=17.1
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|. |.+|||||+ -++.+.+.+
T Consensus 3 I~l~----G~~GsGKsT---~a~~La~~l 24 (223)
T 2xb4_A 3 ILIF----GPNGSGKGT---QGNLVKDKY 24 (223)
T ss_dssp EEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred EEEE----CCCCCCHHH---HHHHHHHHh
Confidence 6666 999999999 666665555
No 231
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=41.70 E-value=6.5 Score=39.89 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |++|||||+
T Consensus 24 ~~Ge~~~li----G~NGsGKST 41 (249)
T 2qi9_C 24 RAGEILHLV----GPNGAGKST 41 (249)
T ss_dssp ETTCEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----CCCCCcHHH
Confidence 345677777 999999999
No 232
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=41.03 E-value=6.8 Score=40.49 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 45 ~~Ge~~~li----G~NGsGKST 62 (279)
T 2ihy_A 45 AKGDKWILY----GLNGAGKTT 62 (279)
T ss_dssp ETTCEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----CCCCCcHHH
Confidence 345667677 999999999
No 233
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=40.91 E-value=6.2 Score=40.00 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=18.8
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|++. |-+|||||+ -++.+.+.|
T Consensus 5 ~lIvl~----G~pGSGKST---la~~La~~L 28 (260)
T 3a4m_A 5 MLIILT----GLPGVGKST---FSKNLAKIL 28 (260)
T ss_dssp EEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred EEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 457777 999999999 666666655
No 234
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=40.49 E-value=7.9 Score=38.56 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=20.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...-|+|. |.+|||||+ -++.+.+.+
T Consensus 25 ~g~~i~i~----G~~GsGKsT---~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFE----GPEGSGKTT---VINEVYHRL 50 (229)
T ss_dssp CCEEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred CCeEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 34567777 999999999 777777666
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=40.43 E-value=7.1 Score=39.75 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=17.4
Q ss_pred CeEEEeecCcccccccccccccccccchhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
+..|+|. |++|+|||+ -++.+...
T Consensus 73 ~~gvll~----Gp~GtGKTt---l~~~i~~~ 96 (278)
T 1iy2_A 73 PKGVLLV----GPPGVGKTH---LARAVAGE 96 (278)
T ss_dssp CCEEEEE----CCTTSSHHH---HHHHHHHH
T ss_pred CCeEEEE----CCCcChHHH---HHHHHHHH
Confidence 4558888 999999999 55544443
No 236
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=40.30 E-value=10 Score=36.70 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=29.6
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 12 PYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 12 P~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.|..+++ ++...+.........+ +.+=..|+..+... ..+++. +++|+|||.
T Consensus 15 ~f~~l~l-~~~l~~~l~~~g~~~~----~~~Q~~~i~~~~~~---~~~lv~----~pTGsGKT~ 66 (224)
T 1qde_A 15 KFDDMEL-DENLLRGVFGYGFEEP----SAIQQRAIMPIIEG---HDVLAQ----AQSGTGKTG 66 (224)
T ss_dssp CGGGGTC-CHHHHHHHHHHTCCSC----CHHHHHHHHHHHTT---CCEEEE----CCTTSSHHH
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCC----cHHHHHHHHHHhcC---CCEEEE----CCCCCcHHH
Confidence 3455554 4555555544333332 33334555555543 347777 999999998
No 237
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=40.15 E-value=6.4 Score=38.92 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=19.2
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|++. |.+|||||+ -++.+.++|
T Consensus 7 ~~i~~e----G~~gsGKsT---~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLE----GPEGAGKST---NRDYLAERL 30 (213)
T ss_dssp EEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred eEEEEE----cCCCCCHHH---HHHHHHHHH
Confidence 456666 999999999 777777777
No 238
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=40.06 E-value=6.5 Score=39.51 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=18.8
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-.|.|+ |.+|||||+ -++.+-+.|
T Consensus 22 ~~iI~I~----G~~GSGKST---~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVS----GGTASGKSS---VCAKIVQLL 46 (252)
T ss_dssp CEEEEEE----CSTTSSHHH---HHHHHHHHT
T ss_pred cEEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3457788 999999999 666655544
No 239
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=39.85 E-value=8.3 Score=36.20 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=12.1
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
..+|. |++|||||+
T Consensus 28 ~~~i~----G~NGsGKSt 41 (182)
T 3kta_A 28 FTAIV----GANGSGKSN 41 (182)
T ss_dssp EEEEE----ECTTSSHHH
T ss_pred cEEEE----CCCCCCHHH
Confidence 55666 999999999
No 240
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=39.78 E-value=6.6 Score=39.35 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=17.0
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.--|++. |.+|||||+ -++.+.++|
T Consensus 25 g~~I~~e----G~~GsGKsT---~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFE----GIDGAGKTT---HLQWFCDRL 49 (227)
T ss_dssp CCEEEEE----CCC---CHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4467777 999999999 777777776
No 241
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=39.66 E-value=7.7 Score=37.84 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=18.6
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
--|++. |.+|||||+ -++.+.+.+
T Consensus 5 ~~I~l~----G~~GsGKsT---~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLI----GPPGAGKGT---QAPNLQERF 28 (220)
T ss_dssp CEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 457777 999999999 766666655
No 242
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=39.56 E-value=6.8 Score=40.23 Aligned_cols=9 Identities=33% Similarity=0.697 Sum_probs=8.9
Q ss_pred ccccccccc
Q psy14295 67 DEIGMGSET 75 (750)
Q Consensus 67 gESGaGKT~ 75 (750)
|+||||||+
T Consensus 9 G~nGaGKST 17 (270)
T 3sop_A 9 GQSGLGKST 17 (270)
T ss_dssp ESSSSSHHH
T ss_pred CCCCCCHHH
Confidence 999999999
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=39.48 E-value=8.2 Score=40.47 Aligned_cols=44 Identities=11% Similarity=0.019 Sum_probs=28.4
Q ss_pred CcchhhhHHHHHHhhhc--------CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 37 PHIFAIGDNGYTHMKRF--------GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 37 PHi~~~a~~ay~~~~~~--------~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.+..+..+....+... .....|.+. |.+|+|||+ .+..+..++
T Consensus 77 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~iv----G~~GsGKTT---l~~~LA~~l 128 (306)
T 1vma_A 77 GDALESLKEIILEILNFDTKLNVPPEPPFVIMVV----GVNGTGKTT---SCGKLAKMF 128 (306)
T ss_dssp SCHHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccCCCCeEEEEE----cCCCChHHH---HHHHHHHHH
Confidence 33555555555544432 234667777 999999999 777666666
No 244
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=39.47 E-value=6.7 Score=41.53 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=17.4
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|-|. |.||||||+ .++.+...+
T Consensus 94 iigI~----GpsGSGKST---l~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIA----GSVAVGKST---TSRVLKALL 116 (321)
T ss_dssp EEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 45566 999999999 766665555
No 245
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=39.22 E-value=7.8 Score=37.31 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
.....++|. |++|||||+
T Consensus 18 ~~G~~~~i~----G~~GsGKTt 35 (220)
T 2cvh_A 18 APGVLTQVY----GPYASGKTT 35 (220)
T ss_dssp CTTSEEEEE----CSTTSSHHH
T ss_pred cCCEEEEEE----CCCCCCHHH
Confidence 455778888 999999999
No 246
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=39.21 E-value=7.4 Score=41.88 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=14.3
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 28 ~~Ge~~~ll----GpsGsGKST 45 (359)
T 3fvq_A 28 DPGEILFII----GASGCGKTT 45 (359)
T ss_dssp CTTCEEEEE----ESTTSSHHH
T ss_pred cCCCEEEEE----CCCCchHHH
Confidence 345666666 999999999
No 247
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=39.02 E-value=7.5 Score=40.42 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.9
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 62 ~~Ge~~~i~----G~NGsGKST 79 (290)
T 2bbs_A 62 ERGQLLAVA----GSTGAGKTS 79 (290)
T ss_dssp CTTCEEEEE----ESTTSSHHH
T ss_pred cCCCEEEEE----CCCCCcHHH
Confidence 455677777 999999999
No 248
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=38.99 E-value=10 Score=40.38 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCCeEEEe--ecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFL--KDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIii--s~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.++| . |++|+|||. .++.+.+.+
T Consensus 48 ~~~~~~li~i~----G~~G~GKT~---L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSI----GRVGIGKTT---LAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECT----TCCSSSHHH---HHHHHHHHH
T ss_pred CCCCEEEEeCc----CcCCCCHHH---HHHHHHHHH
Confidence 46788999 8 999999999 655555443
No 249
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.96 E-value=9.9 Score=39.60 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=18.4
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|++. |++|+|||. .++.+.+.+
T Consensus 44 ~~~~vLl~----G~~GtGKT~---la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVF----GDRGTGKST---AVRALAALL 69 (350)
T ss_dssp GGCCEEEE----CCGGGCTTH---HHHHHHHHS
T ss_pred CCceEEEE----CCCCccHHH---HHHHHHHhC
Confidence 34458888 999999999 555444433
No 250
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=38.31 E-value=7.1 Score=40.29 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=20.2
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+..++|. |++|+|||. .++.+.+.+
T Consensus 36 ~~~~~vll~----G~~GtGKT~---la~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLF----GPPGLGKTT---LAHVIAHEL 62 (324)
T ss_dssp SCCCCCEEE----CCTTCCCHH---HHHHHHHHH
T ss_pred CCCCcEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 356789998 999999999 655554433
No 251
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=38.31 E-value=11 Score=39.12 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=19.0
Q ss_pred CCCeEEEeecCcccccccccccccccccchhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
.....|+|. |++|+|||. .++.+.+
T Consensus 53 ~~~~~vll~----G~~GtGKT~---la~~ia~ 77 (338)
T 3pfi_A 53 ECLDHILFS----GPAGLGKTT---LANIISY 77 (338)
T ss_dssp SCCCCEEEE----CSTTSSHHH---HHHHHHH
T ss_pred CCCCeEEEE----CcCCCCHHH---HHHHHHH
Confidence 455689998 999999999 5555433
No 252
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=38.05 E-value=8.1 Score=39.56 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=14.1
Q ss_pred CeEEEeecCccccccccccc
Q psy14295 56 DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~ 75 (750)
.+.+.|. |+||||||+
T Consensus 30 Ge~~~i~----G~NGsGKST 45 (263)
T 2pjz_A 30 GEKVIIL----GPNGSGKTT 45 (263)
T ss_dssp SSEEEEE----CCTTSSHHH
T ss_pred CEEEEEE----CCCCCCHHH
Confidence 6677777 999999999
No 253
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=38.03 E-value=14 Score=39.82 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=27.1
Q ss_pred hhhHHHHHHhh---hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 41 AIGDNGYTHMK---RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 41 ~~a~~ay~~~~---~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+++.+...+. ..++-.+|++. |.+|+|||+ .++.+...+
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~----G~~G~GKTT---l~~~la~~l 48 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILV----GSPGSGKST---IAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEE----CCCCCcHHH---HHHHHHHHh
Confidence 35566655543 33444568888 999999999 776666555
No 254
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=37.99 E-value=9.2 Score=43.66 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.+.++.++
T Consensus 365 ~~G~~~~iv----G~sGsGKST---ll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFV----GMSGGGKST---LINLIPRFY 391 (578)
T ss_dssp CTTCEEEEE----CSTTSSHHH---HHTTTTTSS
T ss_pred CCCCEEEEE----CCCCChHHH---HHHHHhcCC
Confidence 556778777 999999999 555444444
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=37.84 E-value=8.9 Score=40.48 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=20.3
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....+.-|+|+ |.||||||. -+..+.+.+
T Consensus 6 ~~~~~~~i~i~----GptgsGKt~---la~~La~~~ 34 (316)
T 3foz_A 6 KASLPKAIFLM----GPTASGKTA---LAIELRKIL 34 (316)
T ss_dssp -CCCCEEEEEE----CCTTSCHHH---HHHHHHHHS
T ss_pred cCCCCcEEEEE----CCCccCHHH---HHHHHHHhC
Confidence 33445678999 999999999 555554444
No 256
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=37.63 E-value=8.5 Score=41.50 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=14.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 52 ~~Gei~~Ii----GpnGaGKST 69 (366)
T 3tui_C 52 PAGQIYGVI----GASGAGKST 69 (366)
T ss_dssp CTTCEEEEE----CCTTSSHHH
T ss_pred cCCCEEEEE----cCCCchHHH
Confidence 445666666 999999999
No 257
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=37.57 E-value=8.6 Score=40.45 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=19.4
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....+++. |++|+|||+ -++.+...+
T Consensus 50 ~~~~~ll~----Gp~G~GKTT---La~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLA----GPPGLGKTT---LAHIIASEL 75 (334)
T ss_dssp CCCCEEEE----SSTTSSHHH---HHHHHHHHH
T ss_pred CCCeEEEE----CCCCCcHHH---HHHHHHHHh
Confidence 34678888 999999999 666555544
No 258
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=37.54 E-value=7.1 Score=38.67 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.4
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|++. |-+|||||+ -++.+.++|
T Consensus 5 ~i~~e----G~~gsGKsT---~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIE----GLEGAGKTT---ARNVVVETL 27 (213)
T ss_dssp EEEEE----ECTTSCHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 46666 999999999 777777776
No 259
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=37.53 E-value=13 Score=36.35 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=29.7
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 12 PYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 12 P~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+|..+++ ++...+........ .++.+=..|+..+... +.+++. +++|+|||.
T Consensus 26 ~f~~~~l-~~~l~~~l~~~~~~----~~~~~Q~~~i~~~~~~---~~~li~----a~TGsGKT~ 77 (236)
T 2pl3_A 26 RFSDFPL-SKKTLKGLQEAQYR----LVTEIQKQTIGLALQG---KDVLGA----AKTGSGKTL 77 (236)
T ss_dssp BGGGSCC-CHHHHHHHHHTTCC----BCCHHHHHHHHHHHTT---CCEEEE----CCTTSCHHH
T ss_pred CHhhcCC-CHHHHHHHHHCCCC----CCCHHHHHHHHHHhCC---CCEEEE----eCCCCcHHH
Confidence 3444553 45555555443322 2333445555555543 457777 999999998
No 260
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=37.50 E-value=7.7 Score=40.39 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=18.6
Q ss_pred CCCeEEEeecCcccccccccccccccccchh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLST 84 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l 84 (750)
..+..|+|. ||+|+|||. .++.+-
T Consensus 23 ~~~~~vLi~----Ge~GtGKt~---lAr~i~ 46 (304)
T 1ojl_A 23 PSDATVLIH----GDSGTGKEL---VARALH 46 (304)
T ss_dssp STTSCEEEE----SCTTSCHHH---HHHHHH
T ss_pred CCCCcEEEE----CCCCchHHH---HHHHHH
Confidence 457789999 999999999 544433
No 261
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=37.36 E-value=8.7 Score=41.31 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 27 ~~Ge~~~ll----GpnGsGKST 44 (359)
T 2yyz_A 27 KDGEFVALL----GPSGCGKTT 44 (359)
T ss_dssp CTTCEEEEE----CSTTSSHHH
T ss_pred cCCCEEEEE----cCCCchHHH
Confidence 445677777 999999999
No 262
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=37.33 E-value=14 Score=38.86 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=23.7
Q ss_pred hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 52 RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 52 ~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+-+.++++. |+.|.|||+ .++.+.+.+
T Consensus 20 ~~~~~~a~L~~----G~~G~GKt~---~a~~la~~l 48 (334)
T 1a5t_A 20 AGRGHHALLIQ----ALPGMGDDA---LIYALSRYL 48 (334)
T ss_dssp TTCCCSEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred cCCcceeEEEE----CCCCchHHH---HHHHHHHHH
Confidence 34567889998 999999999 877777766
No 263
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=37.27 E-value=10 Score=43.52 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=19.4
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.+.++.++
T Consensus 379 ~~G~~~~iv----G~sGsGKST---ll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALV----GPTGSGKTT---IVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEE----CCTTSSTTH---HHHHHTTSS
T ss_pred cCCCEEEEE----CCCCCcHHH---HHHHHhcCc
Confidence 456788887 999999999 444444433
No 264
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=37.00 E-value=5.3 Score=40.20 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=19.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..|++. |++|+|||. .++.+...+
T Consensus 43 ~~~~vll~----G~~GtGKT~---la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLV----GPPGTGKTL---LAKAVAGEA 68 (268)
T ss_dssp CCSCCCCB----CSSCSSHHH---HHHHHHHHH
T ss_pred CCceEEEE----CCCCCcHHH---HHHHHHHHh
Confidence 35568777 999999999 666555443
No 265
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=36.82 E-value=9 Score=41.25 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 27 ~~Ge~~~ll----GpnGsGKST 44 (362)
T 2it1_A 27 KDGEFMALL----GPSGSGKST 44 (362)
T ss_dssp CTTCEEEEE----CCTTSSHHH
T ss_pred CCCCEEEEE----CCCCchHHH
Confidence 445667777 999999999
No 266
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=36.70 E-value=8.5 Score=41.86 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=18.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
...+.+.|. |+||||||+ ..+.+..+
T Consensus 45 ~~Ge~~~ll----GpsGsGKST---LLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLL----GRTGSGKST---LLSAFLRL 70 (390)
T ss_dssp CTTCEEEEE----ESTTSSHHH---HHHHHHTC
T ss_pred cCCCEEEEE----CCCCChHHH---HHHHHhCC
Confidence 456777777 999999999 44444433
No 267
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=36.69 E-value=23 Score=34.88 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=27.2
Q ss_pred CHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 20 TAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 20 ~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+++..+......... ++.+=..|+..+... +.+++. +++|||||.
T Consensus 37 ~~~l~~~l~~~g~~~----~~~~Q~~~i~~~~~g---~~~l~~----apTGsGKT~ 81 (242)
T 3fe2_A 37 PANVMDVIARQNFTE----PTAIQAQGWPVALSG---LDMVGV----AQTGSGKTL 81 (242)
T ss_dssp CHHHHHHHHTTTCCS----CCHHHHHHHHHHHHT---CCEEEE----ECTTSCHHH
T ss_pred CHHHHHHHHHCCCCC----CCHHHHHHHHHHhCC---CCEEEE----CCCcCHHHH
Confidence 456666655443322 333445555555543 457777 899999998
No 268
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=36.62 E-value=11 Score=43.29 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.0
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 368 ~~G~~~~iv----G~sGsGKST 385 (595)
T 2yl4_A 368 PSGSVTALV----GPSGSGKST 385 (595)
T ss_dssp CTTCEEEEE----CCTTSSSTH
T ss_pred cCCCEEEEE----CCCCCCHHH
Confidence 455777777 999999999
No 269
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=36.18 E-value=20 Score=39.58 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=20.9
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+....+++. |++|+|||. .++.+.+.+
T Consensus 198 r~~~~~~LL~----G~pG~GKT~---la~~la~~l 225 (468)
T 3pxg_A 198 RRTKNNPVLI----GEPGVGKTA---IAEGLAQQI 225 (468)
T ss_dssp CSSSCEEEEE----SCTTTTTHH---HHHHHHHHH
T ss_pred ccCCCCeEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3556678888 999999999 666555554
No 270
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=36.03 E-value=18 Score=37.46 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=31.0
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 12 PYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 12 P~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+|..+++ +++..+.........+-| +=..|+..+... ++.+++. +++|+|||.
T Consensus 7 ~f~~~~l-~~~~~~~l~~~g~~~~~~----~Q~~~i~~~~~~--~~~~l~~----~~TGsGKT~ 59 (367)
T 1hv8_A 7 NFNELNL-SDNILNAIRNKGFEKPTD----IQMKVIPLFLND--EYNIVAQ----ARTGSGKTA 59 (367)
T ss_dssp CGGGSSC-CHHHHHHHHHHTCCSCCH----HHHHHHHHHHHT--CSEEEEE----CCSSSSHHH
T ss_pred chhhcCC-CHHHHHHHHHcCCCCCCH----HHHHHHHHHhCC--CCCEEEE----CCCCChHHH
Confidence 4566665 455555554443333323 334455555543 2578888 999999998
No 271
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=35.79 E-value=9.1 Score=37.47 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=14.7
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.++|. |++|||||+
T Consensus 23 ~G~~~~i~----G~~GsGKTt 39 (243)
T 1n0w_A 23 TGSITEMF----GEFRTGKTQ 39 (243)
T ss_dssp TTSEEEEE----CCTTSSHHH
T ss_pred CCeEEEEE----CCCCCcHHH
Confidence 45678888 999999999
No 272
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=35.79 E-value=9.3 Score=42.19 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=29.9
Q ss_pred hhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 40 FAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 40 ~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.....+...+..-.+.|.+.|. |.||+|||+ -.+.+..+.
T Consensus 141 ~~tg~~vld~vl~i~~Gq~~~Iv----G~sGsGKST---Ll~~Iag~~ 181 (438)
T 2dpy_A 141 LDTGVRAINALLTVGRGQRMGLF----AGSGVGKSV---LLGMMARYT 181 (438)
T ss_dssp CCCSCHHHHHHSCCBTTCEEEEE----ECTTSSHHH---HHHHHHHHS
T ss_pred cCCCceEEeeeEEecCCCEEEEE----CCCCCCHHH---HHHHHhccc
Confidence 33345678888777888999888 999999999 444444443
No 273
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=35.77 E-value=8.2 Score=41.22 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=31.1
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.|.....|...+..-.+.|.+.|. |.+|||||+ ..+.+...+
T Consensus 54 ~~~tg~~ald~ll~i~~Gq~~gIi----G~nGaGKTT---Ll~~I~g~~ 95 (347)
T 2obl_A 54 PFILGVRAIDGLLTCGIGQRIGIF----AGSGVGKST---LLGMICNGA 95 (347)
T ss_dssp EECCSCHHHHHHSCEETTCEEEEE----ECTTSSHHH---HHHHHHHHS
T ss_pred ecCCCCEEEEeeeeecCCCEEEEE----CCCCCCHHH---HHHHHhcCC
Confidence 354455788888777888999888 999999999 555444443
No 274
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=35.67 E-value=7.9 Score=37.83 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=18.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..|++. |-+|||||+ -++.+.+.+
T Consensus 6 ~~I~l~----G~~GsGKsT---~a~~La~~l 29 (217)
T 3be4_A 6 HNLILI----GAPGSGKGT---QCEFIKKEY 29 (217)
T ss_dssp CEEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 357777 999999999 776666555
No 275
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.61 E-value=12 Score=38.12 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=22.0
Q ss_pred HhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 49 HMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 49 ~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+...+....+++. |++|+|||. .++.+.+.+
T Consensus 35 ~~l~~~~~~~~ll~----G~~G~GKt~---la~~l~~~l 66 (323)
T 1sxj_B 35 QIAKDGNMPHMIIS----GMPGIGKTT---SVHCLAHEL 66 (323)
T ss_dssp HHHHSCCCCCEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred HHHHcCCCCeEEEE----CcCCCCHHH---HHHHHHHHh
Confidence 33344433338888 999999999 777666655
No 276
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=35.56 E-value=7.9 Score=39.02 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.9
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|++. |.+|||||+ -++.+.++|
T Consensus 27 ~~~i~~e----G~~GsGKsT---~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIE----GLEGAGKST---AIQVVVETL 51 (236)
T ss_dssp CCEEEEE----ESTTSCHHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4567777 999999999 777777766
No 277
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=35.45 E-value=8.3 Score=41.12 Aligned_cols=25 Identities=4% Similarity=-0.062 Sum_probs=17.8
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.+.|. |+||||||+ -.+.+...+
T Consensus 170 g~k~~Iv----G~nGsGKST---Llk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAIL----GGESSGKSV---LVNKLAAVF 194 (365)
T ss_dssp CEEEEEE----CCTTSHHHH---HHHHHHHHT
T ss_pred hCeEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 4667777 999999999 555444443
No 278
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=35.34 E-value=9.8 Score=41.11 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 35 ~~Ge~~~ll----GpnGsGKST 52 (372)
T 1v43_A 35 KDGEFLVLL----GPSGCGKTT 52 (372)
T ss_dssp CTTCEEEEE----CCTTSSHHH
T ss_pred CCCCEEEEE----CCCCChHHH
Confidence 455677777 999999999
No 279
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=34.86 E-value=9.6 Score=40.90 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.5
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 39 ~~Ge~~~ll----GpnGsGKST 56 (355)
T 1z47_A 39 REGEMVGLL----GPSGSGKTT 56 (355)
T ss_dssp ETTCEEEEE----CSTTSSHHH
T ss_pred CCCCEEEEE----CCCCCcHHH
Confidence 345677777 999999999
No 280
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=34.82 E-value=11 Score=43.31 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=19.8
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.+.++.++
T Consensus 367 ~~Ge~~~iv----G~sGsGKST---ll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVL----GETGSGKST---LMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEE----CSSSSSHHH---HHHTTTTSS
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhCCc
Confidence 456778777 999999999 555544444
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=34.65 E-value=10 Score=39.50 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=20.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.|++. |.+|+|||+ .+..+..++
T Consensus 104 ~g~vi~lv----G~~GsGKTT---l~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLF----GSTGAGKTT---TLAKLAAIS 129 (296)
T ss_dssp CSSEEEEE----ESTTSSHHH---HHHHHHHHH
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 45677777 999999999 776666555
No 282
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=34.27 E-value=18 Score=38.23 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 44 DNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 44 ~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
..++..+.. .+.+|+. +++|+|||.
T Consensus 68 ~~~i~~~~~---~~~~lv~----a~TGsGKT~ 92 (414)
T 3eiq_A 68 QRAILPCIK---GYDVIAQ----AQSGTGKTA 92 (414)
T ss_dssp HHHHHHHHT---TCCEEEC----CCSCSSSHH
T ss_pred HHHhHHHhC---CCCEEEE----CCCCCcccH
Confidence 455555554 2347888 999999998
No 283
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=34.24 E-value=8.3 Score=41.25 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 24 ~~Ge~~~ll----GpnGsGKST 41 (348)
T 3d31_A 24 ESGEYFVIL----GPTGAGKTL 41 (348)
T ss_dssp CTTCEEEEE----CCCTHHHHH
T ss_pred cCCCEEEEE----CCCCccHHH
Confidence 445677777 999999999
No 284
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=34.20 E-value=10 Score=38.79 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.3
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
-...+.++|. |++|||||+
T Consensus 32 l~~G~~~~i~----G~~G~GKTT 50 (296)
T 1cr0_A 32 ARGGEVIMVT----SGSGMGKST 50 (296)
T ss_dssp BCTTCEEEEE----ESTTSSHHH
T ss_pred CCCCeEEEEE----eCCCCCHHH
Confidence 4567788888 999999999
No 285
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=34.16 E-value=12 Score=43.48 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=32.7
Q ss_pred CCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 13 YQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 13 ~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
|..+++ .+...+.++.... ++++.+=.+|+..+.. .++.+|++ |++|||||.
T Consensus 10 ~~~l~l-~~~~~~~l~~~g~----~~l~~~Q~~~i~~~~~--~~~~~lv~----apTGsGKT~ 61 (715)
T 2va8_A 10 IEDLKL-PSNVIEIIKKRGI----KKLNPPQTEAVKKGLL--EGNRLLLT----SPTGSGKTL 61 (715)
T ss_dssp GGGSSS-CHHHHHHHHTTSC----CBCCHHHHHHHHTTTT--TTCCEEEE----CCTTSCHHH
T ss_pred HHHcCC-CHHHHHHHHhCCC----CCCCHHHHHHHHHHhc--CCCcEEEE----cCCCCcHHH
Confidence 444553 4556666654332 2455555666655333 26789999 999999999
No 286
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=34.15 E-value=12 Score=40.88 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=19.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....-||++ |-||||||+ -++.+.+.+
T Consensus 256 ~~~~lIil~----G~pGSGKST---la~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAV----GFPGAGKST---FIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEE----SCTTSSHHH---HHHHHTGGG
T ss_pred CCCEEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 345678888 999999999 655554433
No 287
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=34.15 E-value=8.7 Score=38.16 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=19.5
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..-|++. |-+|||||+ -++.+.++|
T Consensus 5 g~~i~~e----G~~g~GKst---~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIE----GLDRTGKTT---QCNILYKKL 29 (216)
T ss_dssp CCEEEEE----ECSSSSHHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3467777 999999999 776666666
No 288
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=34.13 E-value=11 Score=38.04 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=19.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..-|+|. |-.|||||+ -++.+.++|
T Consensus 23 ~~~~I~ie----G~~GsGKST---~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIE----GNIAAGKST---FVNILKQLC 48 (263)
T ss_dssp CCEEEEEE----CSTTSSHHH---HHTTTGGGC
T ss_pred CceEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 34557777 999999999 777666666
No 289
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=34.04 E-value=11 Score=37.16 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=19.5
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|++. |-+|||||+ -++.+-+.+
T Consensus 16 ~~~I~l~----G~~GsGKsT---~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLL----GPPGAGKGT---QAPKLAKNF 40 (233)
T ss_dssp CCEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 3568888 999999999 776666655
No 290
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=34.02 E-value=10 Score=43.22 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=19.0
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.+.+...+
T Consensus 367 ~~G~~~~iv----G~sGsGKST---Ll~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALV----GRSGSGKST---IASLITRFY 393 (582)
T ss_dssp CTTCEEEEE----ECTTSSHHH---HHHHHTTTT
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhhcc
Confidence 456777777 999999999 444444333
No 291
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=34.00 E-value=21 Score=41.61 Aligned_cols=52 Identities=8% Similarity=0.033 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 13 YQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 13 ~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
|..+++ ++...+.++.... ++++.+=.+++...... ++.+|++ |++|||||.
T Consensus 3 f~~l~l-~~~~~~~l~~~g~----~~l~~~Q~~~i~~~~~~--~~~~lv~----apTGsGKT~ 54 (720)
T 2zj8_A 3 VDELRV-DERIKSTLKERGI----ESFYPPQAEALKSGILE--GKNALIS----IPTASGKTL 54 (720)
T ss_dssp GGGCCS-CHHHHHHHHHTTC----CBCCHHHHHHHTTTGGG--TCEEEEE----CCGGGCHHH
T ss_pred HhhcCC-CHHHHHHHHHCCC----CCCCHHHHHHHHHHhcC--CCcEEEE----cCCccHHHH
Confidence 445553 5566666655332 24455556666653333 6789999 999999998
No 292
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=33.97 E-value=9.2 Score=37.06 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=17.8
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..|.|+ |.+|||||+ -++.+-+.+
T Consensus 4 ~~i~i~----G~~gsGkst---~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALD----GPAAAGKST---IAKRVASEL 27 (219)
T ss_dssp CCEEEE----CCTTSSHHH---HHHHHHHHT
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 468888 999999999 665554433
No 293
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=33.78 E-value=10 Score=40.92 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.8
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.+.|. |+||||||+
T Consensus 28 ~Ge~~~ll----GpnGsGKST 44 (372)
T 1g29_1 28 DGEFMILL----GPSGCGKTT 44 (372)
T ss_dssp TTCEEEEE----CSTTSSHHH
T ss_pred CCCEEEEE----CCCCcHHHH
Confidence 45666666 999999999
No 294
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=33.78 E-value=10 Score=38.74 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=16.4
Q ss_pred eEEEeecCcccccccccccccccccchhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
..|+|. |-+|||||+ -++.+.+
T Consensus 3 ~~I~l~----G~~GsGKST---~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTI----GCPGSGKST---WAREFIA 24 (301)
T ss_dssp EEEEEE----CCTTSSHHH---HHHHHHH
T ss_pred eEEEEE----CCCCCCHHH---HHHHHHH
Confidence 357788 999999999 5554443
No 295
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=33.62 E-value=12 Score=37.14 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
....|.|. |.+|||||+ -++.+..
T Consensus 15 ~~~~i~i~----G~~gsGKst---~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAID----GPASSGKST---VAKIIAK 38 (236)
T ss_dssp CCCEEEEE----CSSCSSHHH---HHHHHHH
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHH
Confidence 44578888 999999999 5555444
No 296
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=33.43 E-value=11 Score=43.12 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=19.1
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+.|. |+||||||+ -.+.+..++
T Consensus 367 ~~G~~~~iv----G~sGsGKST---ll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALV----GRSGSGKST---IANLFTRFY 393 (582)
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHhcCC
Confidence 456777777 999999999 444444433
No 297
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=33.42 E-value=12 Score=39.47 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=20.6
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.|.+. |.+|+|||+ ++..+..++
T Consensus 104 ~~~vI~iv----G~~G~GKTT---~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLV----GVNGTGKTT---SLAKMANYY 129 (320)
T ss_dssp SCEEEEEE----SSTTSSHHH---HHHHHHHHH
T ss_pred CCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 35677777 999999999 777776666
No 298
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=33.40 E-value=10 Score=37.55 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=18.7
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.-|+|. |-+|||||+ -++.+.++|
T Consensus 3 ~~i~~~----G~~g~GKtt---~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIE----GNIAVGKST---FVKLLTKTY 26 (241)
T ss_dssp EEEEEE----ECTTSSHHH---HHHHHHHHC
T ss_pred eEEEEE----cCCCCCHHH---HHHHHHHHc
Confidence 457777 999999999 666666665
No 299
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=33.15 E-value=9.7 Score=36.94 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=17.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
..--|.|+ |-+|||||+ -++.+-+.
T Consensus 11 ~~~iIglt----G~~GSGKST---va~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVT----GKIGTGKST---VCEILKNK 35 (192)
T ss_dssp CEEEEEEE----CSTTSSHHH---HHHHHHHH
T ss_pred cceEEEEE----CCCCCCHHH---HHHHHHHh
Confidence 34457777 999999999 55554443
No 300
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=33.08 E-value=9.7 Score=40.64 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=18.8
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-.|+|+ |.||||||+ -++.+.+.+
T Consensus 8 ~lI~I~----GptgSGKTt---la~~La~~l 31 (340)
T 3d3q_A 8 FLIVIV----GPTASGKTE---LSIEVAKKF 31 (340)
T ss_dssp EEEEEE----CSTTSSHHH---HHHHHHHHT
T ss_pred ceEEEE----CCCcCcHHH---HHHHHHHHc
Confidence 368888 999999999 666665555
No 301
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=32.33 E-value=11 Score=38.75 Aligned_cols=27 Identities=11% Similarity=-0.086 Sum_probs=20.8
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+.+-.+++. |++|+|||. -++.+.+.+
T Consensus 34 ~~p~~lLl~----GppGtGKT~---la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIW----GGKGQGKSF---QCELVFRKM 60 (293)
T ss_dssp CCCSEEEEE----ECTTSCHHH---HHHHHHHHH
T ss_pred CCCeEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 455678888 999999999 666665554
No 302
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=31.85 E-value=8.6 Score=41.18 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 29 ~~Ge~~~ll----GpnGsGKST 46 (353)
T 1oxx_K 29 ENGERFGIL----GPSGAGKTT 46 (353)
T ss_dssp CTTCEEEEE----CSCHHHHHH
T ss_pred CCCCEEEEE----CCCCCcHHH
Confidence 445677777 999999999
No 303
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=31.70 E-value=11 Score=37.13 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.4
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|..||||++ -++.+.+.+
T Consensus 7 GpPGsGKgT---qa~~La~~~ 24 (206)
T 3sr0_A 7 GPPGAGKGT---QAKRLAKEK 24 (206)
T ss_dssp CSTTSSHHH---HHHHHHHHH
T ss_pred CCCCCCHHH---HHHHHHHHH
Confidence 999999999 777777666
No 304
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=31.68 E-value=11 Score=40.00 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=17.5
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
--|+|+ |.||||||. -+..+.+.+
T Consensus 4 ~~i~i~----GptgsGKt~---la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIV----GPTAVGKTK---TSVMLAKRL 27 (322)
T ss_dssp EEEEEE----CCTTSCHHH---HHHHHHHTT
T ss_pred cEEEEE----CCCcCCHHH---HHHHHHHhC
Confidence 357888 999999999 555444443
No 305
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=31.67 E-value=13 Score=37.03 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=20.8
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....-|++. |-+|||||+ -++.+.++|
T Consensus 19 ~~~~~i~~~----G~~g~GKst---~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFE----GIDGSGKTT---QSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CCCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 345567777 999999999 777777766
No 306
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=31.34 E-value=38 Score=32.31 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHH
Q psy14295 661 GHIVGLQARARGYLTRRMYAQ 681 (750)
Q Consensus 661 ~aai~IQa~~Rg~laRr~y~~ 681 (750)
.||..||.+||.|+.|+.+..
T Consensus 131 ~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 131 VSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 467778888888877765543
No 307
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=31.11 E-value=23 Score=37.45 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=30.0
Q ss_pred cCCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 11 NPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 11 NP~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
++|..+++ +++..+......... |..+ =..|+..+... +.+++. +++|+|||.
T Consensus 21 ~~f~~~~l-~~~l~~~l~~~g~~~--~~~~--Q~~~i~~i~~~---~~~li~----a~TGsGKT~ 73 (400)
T 1s2m_A 21 NTFEDFYL-KRELLMGIFEAGFEK--PSPI--QEEAIPVAITG---RDILAR----AKNGTGKTA 73 (400)
T ss_dssp CCGGGGCC-CHHHHHHHHHTTCCS--CCHH--HHHHHHHHHHT---CCEEEE----CCTTSCHHH
T ss_pred CChhhcCC-CHHHHHHHHHCCCCC--CCHH--HHHHHHHHhcC---CCEEEE----CCCCcHHHH
Confidence 45666665 344454444333322 3333 24445555543 347777 999999998
No 308
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=30.74 E-value=13 Score=38.86 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=19.9
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..|++. |++|+|||. .++.+.+.+
T Consensus 50 ~~~~vLl~----GppGtGKT~---la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLY----GPPGTGKSY---LAKAVATEA 75 (322)
T ss_dssp CCCEEEEE----CSSSSCHHH---HHHHHHHHH
T ss_pred CCCeEEEE----CCCCCcHHH---HHHHHHHHH
Confidence 35679998 999999999 666655543
No 309
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=30.30 E-value=13 Score=38.11 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=17.1
Q ss_pred CeEEEeecCcccccccccccccccccchhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQ 85 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~ 85 (750)
+..+++. |++|+|||+ -++.+..
T Consensus 44 ~~GvlL~----Gp~GtGKTt---Lakala~ 66 (274)
T 2x8a_A 44 PAGVLLA----GPPGCGKTL---LAKAVAN 66 (274)
T ss_dssp CSEEEEE----SSTTSCHHH---HHHHHHH
T ss_pred CCeEEEE----CCCCCcHHH---HHHHHHH
Confidence 3458888 999999999 5554444
No 310
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=29.84 E-value=16 Score=36.01 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=27.8
Q ss_pred CCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 13 YQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 13 ~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
|..+++ +++..+......... |- .+=..|+..+... ..+++. +++|+|||.
T Consensus 32 f~~l~l-~~~l~~~l~~~g~~~--~~--~~Q~~ai~~i~~~---~~~li~----apTGsGKT~ 82 (237)
T 3bor_A 32 FDDMNL-KESLLRGIYAYGFEK--PS--AIQQRAIIPCIKG---YDVIAQ----AQSGTGKTA 82 (237)
T ss_dssp GGGSCC-CHHHHHHHHHHTCCS--CC--HHHHHHHHHHHTT---CCEEEC----CCSSHHHHH
T ss_pred hhhcCC-CHHHHHHHHHCCCCC--CC--HHHHHHHHHHhCC---CCEEEE----CCCCCcHHH
Confidence 444444 455555444333322 22 2233455555542 447777 999999998
No 311
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=29.79 E-value=14 Score=38.63 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=20.0
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|++. |++|+|||. .++.+.+.+
T Consensus 44 ~~~~iLL~----GppGtGKT~---la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLF----GPPGTGKSY---LAKAVATEA 69 (322)
T ss_dssp CCSEEEEE----SSSSSCHHH---HHHHHHHHT
T ss_pred CCceEEEE----CCCCccHHH---HHHHHHHHc
Confidence 34789998 999999999 666555544
No 312
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=29.68 E-value=16 Score=37.92 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHH
Q psy14295 230 DIRSAMKVLQFSDEDIWDVFKLLA 253 (750)
Q Consensus 230 ~l~~Al~~lG~~~~e~~~I~~iLa 253 (750)
.+.++|+.+|+++...+...+.|+
T Consensus 266 ~v~~~l~~~~L~~~~~~~~~~~ls 289 (302)
T 2yv5_A 266 AVKEAVKNGEISCERYKSYLKIIK 289 (302)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 477899999998655555555544
No 313
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=29.62 E-value=11 Score=36.59 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.1
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-.|.|+ |++|||||+ .++.+-+.|
T Consensus 7 ~iI~i~----g~~GsGk~t---i~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIG----REFGSGGHL---VAKKLAEHY 30 (201)
T ss_dssp CEEEEE----ECTTSSHHH---HHHHHHHHT
T ss_pred eEEEEe----CCCCCCHHH---HHHHHHHHh
Confidence 368888 999999999 776665555
No 314
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=29.33 E-value=14 Score=38.60 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=19.4
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+.+++. |++|+|||. -+..+...+
T Consensus 152 ~~~lll~----G~~GtGKT~---La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLY----GDMGIGKSY---LLAAMAHEL 176 (308)
T ss_dssp CCEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CceEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 5889998 999999999 555554444
No 315
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=29.21 E-value=14 Score=37.97 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=13.6
Q ss_pred CeEEEeecCccccccccccc
Q psy14295 56 DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~ 75 (750)
.--|+|. |-+|||||+
T Consensus 75 ~~iI~I~----G~~GSGKST 90 (281)
T 2f6r_A 75 LYVLGLT----GISGSGKSS 90 (281)
T ss_dssp CEEEEEE----ECTTSCHHH
T ss_pred CEEEEEE----CCCCCCHHH
Confidence 4457888 999999999
No 316
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=29.05 E-value=18 Score=41.03 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=19.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....+++. |++|+|||+ .++.+...+
T Consensus 107 ~g~~vll~----Gp~GtGKTt---lar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLA----GPPGVGKTS---LAKSIAKSL 132 (543)
T ss_dssp CSCEEEEE----SSSSSSHHH---HHHHHHHHH
T ss_pred CCCEEEEE----CCCCCCHHH---HHHHHHHhc
Confidence 45678888 999999999 666555544
No 317
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=28.90 E-value=22 Score=38.91 Aligned_cols=44 Identities=9% Similarity=-0.092 Sum_probs=36.5
Q ss_pred CcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 37 PHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 37 PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.+..+.-++-.-+.--.+-|.+.|. |.||+|||+ -.+.+.+++
T Consensus 155 ~~~~~tGiraID~~~pi~rGQr~~Iv----G~sG~GKTt---Ll~~Iar~i 198 (422)
T 3ice_A 155 GSTEDLTARVLDLASPIGRGQRGLIV----APPKAGKTM---LLQNIAQSI 198 (422)
T ss_dssp CCTTHHHHHHHHHHSCCBTTCEEEEE----CCSSSSHHH---HHHHHHHHH
T ss_pred CCcccccceeeeeeeeecCCcEEEEe----cCCCCChhH---HHHHHHHHH
Confidence 45778888888888888889999998 999999999 666666655
No 318
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=28.85 E-value=25 Score=35.31 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=26.8
Q ss_pred CHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 20 TAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 20 ~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+++..+.++..... .++.+=..++..+... +.+++. +++|||||.
T Consensus 62 ~~~l~~~l~~~g~~----~~~~~Q~~~i~~~~~~---~~~lv~----a~TGsGKT~ 106 (262)
T 3ly5_A 62 NENTLKAIKEMGFT----NMTEIQHKSIRPLLEG---RDLLAA----AKTGSGKTL 106 (262)
T ss_dssp CHHHHHHHHHTTCC----BCCHHHHHHHHHHHHT---CCCEEC----CCTTSCHHH
T ss_pred CHHHHHHHHHCCCC----CCCHHHHHHHHHHhCC---CcEEEE----ccCCCCchH
Confidence 44455554443222 2344445666666553 347777 999999998
No 319
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=28.36 E-value=21 Score=34.47 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=16.8
Q ss_pred HhhhcCCCeEEEeecCccccccccccc
Q psy14295 49 HMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 49 ~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
.+...+..--|+|. |.+|+|||.
T Consensus 31 ~~~~~~~~~~i~iv----G~~gvGKTt 53 (226)
T 2hf9_A 31 KLLNKHGVVAFDFM----GAIGSGKTL 53 (226)
T ss_dssp HHHHHTTCEEEEEE----ESTTSSHHH
T ss_pred HHHHhCCCeEEEEE----cCCCCCHHH
Confidence 33344455667777 999999999
No 320
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=28.36 E-value=13 Score=39.44 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=18.4
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..|+|+ |.+|||||+ -++.+.+.+
T Consensus 6 ~~i~i~----GptGsGKTt---la~~La~~l 29 (323)
T 3crm_A 6 PAIFLM----GPTAAGKTD---LAMALADAL 29 (323)
T ss_dssp EEEEEE----CCTTSCHHH---HHHHHHHHS
T ss_pred cEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 468888 999999999 665555544
No 321
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=28.27 E-value=17 Score=35.45 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
....++|. |++|||||+
T Consensus 22 ~G~~~~i~----G~~GsGKTt 38 (247)
T 2dr3_A 22 ERNVVLLS----GGPGTGKTI 38 (247)
T ss_dssp TTCEEEEE----ECTTSSHHH
T ss_pred CCcEEEEE----CCCCCCHHH
Confidence 45678888 999999999
No 322
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.93 E-value=16 Score=41.02 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=20.5
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+++|+ |++|+|||. .++.+.+.+
T Consensus 76 ~~~~lLL~----GppGtGKTt---la~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLY----GPPGIGKTT---AAHLVAQEL 101 (516)
T ss_dssp SCSEEEEE----CSTTSSHHH---HHHHHHHHT
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 34789999 999999999 666665544
No 323
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=27.86 E-value=19 Score=45.45 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|.|-|. |+||||||+ -.+.+++++
T Consensus 1103 ~~Ge~vaIV----G~SGsGKST---L~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALV----GPSGCGKST---VVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEE----CSTTSSTTS---HHHHHTTSS
T ss_pred CCCCEEEEE----CCCCChHHH---HHHHHhcCc
Confidence 556888777 999999999 666666666
No 324
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=27.72 E-value=14 Score=36.69 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=24.3
Q ss_pred HHHHhhhc-CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 46 GYTHMKRF-GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 46 ay~~~~~~-~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+...+.+. .+.-+|++. |..|+|||. .+..+.+++
T Consensus 47 ~l~~~~~~iPkkn~ili~----GPPGtGKTt---~a~ala~~l 82 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFC----GPANTGKSY---FGMSFIHFI 82 (212)
T ss_dssp HHHHHHHTCTTCSEEEEE----SCGGGCHHH---HHHHHHHHH
T ss_pred HHHHHHhcCCcccEEEEE----CCCCCCHHH---HHHHHHHHh
Confidence 34444443 233579999 999999999 776666665
No 325
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=27.66 E-value=14 Score=41.03 Aligned_cols=27 Identities=4% Similarity=0.032 Sum_probs=20.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+.+.|. |+||||||+ -.|.+..++
T Consensus 136 ~~Ge~v~Iv----GpnGsGKST---Llr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIV----GGSQTGKTS---LSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEE----ESTTSSHHH---HHHHHHHTT
T ss_pred CCCCEEEEE----CCCCCCHHH---HHHHHhCcc
Confidence 456778787 999999999 666655555
No 326
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=27.56 E-value=27 Score=22.17 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy14295 685 AIVKIQAHVRRMIAQ 699 (750)
Q Consensus 685 Aai~IQs~~R~~~aR 699 (750)
|+..||.+||.+..|
T Consensus 8 A~llI~d~~r~~k~r 22 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 556677777766544
No 327
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=27.36 E-value=21 Score=33.87 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=14.1
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
.....|++. |.+|+|||+
T Consensus 24 ~~~~~v~lv----G~~g~GKST 41 (210)
T 1pui_A 24 DTGIEVAFA----GRSNAGKSS 41 (210)
T ss_dssp SCSEEEEEE----ECTTSSHHH
T ss_pred CCCcEEEEE----CCCCCCHHH
Confidence 344566676 999999999
No 328
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=27.17 E-value=14 Score=39.58 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHHhhc--CCChhhHHHHHHHHHHHHHhCCc
Q psy14295 230 DIRSAMKVL--QFSDEDIWDVFKLLAAVLHTGNI 261 (750)
Q Consensus 230 ~l~~Al~~l--G~~~~e~~~I~~iLaaILhLGni 261 (750)
.+...+..+ ++++.+...|...+-.++..-.+
T Consensus 126 ~l~~~~~~~~~~l~~~e~~~l~~ai~~~y~~~gi 159 (392)
T 4ag6_A 126 TLRTFFSLYLRDLTDTEKAALEDALVEVYKEAGI 159 (392)
T ss_dssp HHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 344444443 68888888888888888775444
No 329
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=27.15 E-value=15 Score=37.24 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=15.0
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.++|. |++|||||+
T Consensus 29 ~G~i~~i~----G~~GsGKTt 45 (279)
T 1nlf_A 29 AGTVGALV----SPGGAGKSM 45 (279)
T ss_dssp TTSEEEEE----ESTTSSHHH
T ss_pred CCCEEEEE----cCCCCCHHH
Confidence 56788888 999999999
No 330
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=26.87 E-value=29 Score=33.83 Aligned_cols=52 Identities=6% Similarity=0.076 Sum_probs=29.4
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 12 PYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 12 P~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+|..+++ ++...+.........+ +.+=..++..+.. .+.+++. +++|+|||.
T Consensus 25 ~f~~l~l-~~~l~~~l~~~g~~~~----~~~Q~~~i~~~~~---~~~~l~~----a~TGsGKT~ 76 (230)
T 2oxc_A 25 DFESLLL-SRPVLEGLRAAGFERP----SPVQLKAIPLGRC---GLDLIVQ----AKSGTGKTC 76 (230)
T ss_dssp CGGGGTC-CHHHHHHHHHTTCCSC----CHHHHHHHHHHHT---TCCEEEE----CCTTSSHHH
T ss_pred CHhhcCC-CHHHHHHHHHCCCCCC----CHHHHHHHHHHhC---CCCEEEE----CCCCCcHHH
Confidence 3455544 4555555554433222 3333445555544 2457777 999999998
No 331
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=26.81 E-value=17 Score=40.74 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=13.3
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
+.+.|. |+||||||+
T Consensus 30 e~~~li----G~nGsGKST 44 (483)
T 3euj_A 30 LVTTLS----GGNGAGKST 44 (483)
T ss_dssp SEEEEE----CCTTSSHHH
T ss_pred ceEEEE----CCCCCcHHH
Confidence 677777 999999999
No 332
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=26.71 E-value=15 Score=42.16 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=19.7
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...++|. |++|+|||+ .++.+...+
T Consensus 60 g~~vll~----Gp~GtGKTt---lar~ia~~l 84 (604)
T 3k1j_A 60 KRHVLLI----GEPGTGKSM---LGQAMAELL 84 (604)
T ss_dssp TCCEEEE----CCTTSSHHH---HHHHHHHTS
T ss_pred CCEEEEE----eCCCCCHHH---HHHHHhccC
Confidence 3688888 999999999 666665554
No 333
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=26.70 E-value=16 Score=38.85 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=20.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..|++. |++|+|||. .++.+.+.+
T Consensus 83 ~~~~iLL~----GppGtGKT~---la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLY----GPPGTGKSY---LAKAVATEA 108 (355)
T ss_dssp CCCCEEEE----CSTTSCHHH---HHHHHHHHH
T ss_pred CCceEEEE----CCCCCcHHH---HHHHHHHHh
Confidence 34679988 999999999 766665554
No 334
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=26.37 E-value=20 Score=37.87 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=23.4
Q ss_pred HHHHHHhh-hcCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 44 DNGYTHMK-RFGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 44 ~~ay~~~~-~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+...+. ..+....|.|. |.+|||||+ -.+.++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~----G~~GaGKST---Ll~~l~g~~ 79 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGIT----GVPGVGKST---TIDALGSLL 79 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEE----CCCCCCHHH---HHHHHHHhh
Confidence 33444443 24566777787 999999999 544444433
No 335
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=26.18 E-value=14 Score=40.30 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=17.9
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|+ |.||||||. -+..+.+.+
T Consensus 4 ~i~i~----GptgsGKtt---la~~La~~~ 26 (409)
T 3eph_A 4 VIVIA----GTTGVGKSQ---LSIQLAQKF 26 (409)
T ss_dssp EEEEE----ECSSSSHHH---HHHHHHHHH
T ss_pred EEEEE----CcchhhHHH---HHHHHHHHC
Confidence 47888 999999999 666665554
No 336
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=25.94 E-value=19 Score=35.66 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=20.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..--|+|. |..||||++ -++.+.+.+
T Consensus 28 k~kiI~ll----GpPGsGKgT---qa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVL----GGPGSGKGT---QCEKLVQKF 53 (217)
T ss_dssp SCEEEEEE----CCTTCCHHH---HHHHHHHHH
T ss_pred CCcEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 44456777 999999999 777777666
No 337
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=25.90 E-value=17 Score=38.99 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=19.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQF 86 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~ 86 (750)
...+|+|. |++|+|||. .++.+...
T Consensus 147 ~~~~vLL~----GppGtGKT~---la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLF----GPPGNGKTM---LAKAVAAE 171 (389)
T ss_dssp CCSEEEEE----SSTTSCHHH---HHHHHHHH
T ss_pred CCceEEEE----CCCCCCHHH---HHHHHHHh
Confidence 35789999 999999999 65555443
No 338
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=25.52 E-value=20 Score=33.91 Aligned_cols=9 Identities=22% Similarity=0.616 Sum_probs=8.9
Q ss_pred ccccccccc
Q psy14295 67 DEIGMGSET 75 (750)
Q Consensus 67 gESGaGKT~ 75 (750)
|.+|+|||+
T Consensus 12 G~~g~GKST 20 (199)
T 2f9l_A 12 GDSGVGKSN 20 (199)
T ss_dssp SSTTSSHHH
T ss_pred CcCCCCHHH
Confidence 999999999
No 339
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=25.39 E-value=19 Score=33.98 Aligned_cols=9 Identities=22% Similarity=0.616 Sum_probs=8.9
Q ss_pred ccccccccc
Q psy14295 67 DEIGMGSET 75 (750)
Q Consensus 67 gESGaGKT~ 75 (750)
|.+|+|||+
T Consensus 36 G~~g~GKST 44 (191)
T 1oix_A 36 GDSGVGKSN 44 (191)
T ss_dssp ECTTSSHHH
T ss_pred CcCCCCHHH
Confidence 999999999
No 340
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=25.10 E-value=26 Score=38.44 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=20.8
Q ss_pred eEEEeecCcccccccccccccccccchhhhh
Q psy14295 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..++|. |..|+|||. ..+.++.+|
T Consensus 46 ~~~li~----G~aGTGKT~---ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTIN----GPAGTGATT---LTKFIIEAL 69 (459)
T ss_dssp CEEEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred CEEEEE----eCCCCCHHH---HHHHHHHHH
Confidence 488888 999999999 888888877
No 341
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=25.09 E-value=12 Score=40.93 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=11.6
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
.+.|. |++|||||+
T Consensus 71 ~valv----G~nGaGKST 84 (413)
T 1tq4_A 71 NVAVT----GETGSGKSS 84 (413)
T ss_dssp EEEEE----ECTTSSHHH
T ss_pred EEEEE----CCCCCcHHH
Confidence 45555 999999999
No 342
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=25.05 E-value=24 Score=36.46 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=18.7
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHH
Q psy14295 230 DIRSAMKVLQFSDEDIWDVFKLLAAV 255 (750)
Q Consensus 230 ~l~~Al~~lG~~~~e~~~I~~iLaaI 255 (750)
.+.++|+.+|++++..+..-..|+.+
T Consensus 270 ~v~~~l~~~~L~~~~~~~~~~~lse~ 295 (301)
T 1u0l_A 270 GVKEAVENGEIAESRYENYVKMFYEL 295 (301)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 46788999999866666666666644
No 343
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=24.95 E-value=21 Score=34.30 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=13.5
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..--|++. |.+|+|||+
T Consensus 29 ~~~~i~i~----G~~g~GKTT 45 (221)
T 2wsm_A 29 GTVAVNIM----GAIGSGKTL 45 (221)
T ss_dssp TCEEEEEE----ECTTSCHHH
T ss_pred CceEEEEE----cCCCCCHHH
Confidence 34466777 999999999
No 344
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=24.87 E-value=19 Score=40.26 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=19.1
Q ss_pred CCCeEEEeecCcccccccccccccccccchh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLST 84 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l 84 (750)
..+..|+|. |++|+|||. .++.+-
T Consensus 236 ~~~~~vLL~----GppGtGKT~---lAraia 259 (489)
T 3hu3_A 236 KPPRGILLY----GPPGTGKTL---IARAVA 259 (489)
T ss_dssp CCCCEEEEE----CSTTSSHHH---HHHHHH
T ss_pred CCCCcEEEE----CcCCCCHHH---HHHHHH
Confidence 567789999 999999999 555443
No 345
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=24.83 E-value=26 Score=38.48 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=13.5
Q ss_pred CCCeE--EEeecCccccccccccc
Q psy14295 54 GQDQC--IFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~Qs--Iiis~~f~gESGaGKT~ 75 (750)
+.... |.|. |+||||||+
T Consensus 38 ~~Gei~~vaLv----G~nGaGKST 57 (427)
T 2qag_B 38 SQGFCFNILCV----GETGLGKST 57 (427)
T ss_dssp C-CCEEEEEEE----CSTTSSSHH
T ss_pred cCCCeeEEEEE----CCCCCCHHH
Confidence 44455 6666 999999999
No 346
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=24.60 E-value=23 Score=40.94 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=20.8
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|++. |-||||||+ -++.+-+.|
T Consensus 51 ~g~lIvLt----GlsGSGKST---lAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLT----GLSGAGKTT---VSMALEEYL 76 (630)
T ss_dssp CCEEEEEE----CSTTSSHHH---HHHHHHHHH
T ss_pred CCCEEEEE----eCCCCCHHH---HHHHHHHHH
Confidence 45568888 999999999 777776665
No 347
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=24.44 E-value=31 Score=38.09 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=34.6
Q ss_pred CCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhc---------CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 19 YTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRF---------GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 19 y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~---------~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+|+.+..+-+........-.-+++..++....+. .....|++. |.+|+|||+ .++.+-+.+
T Consensus 4 ~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~----GppGtGKT~---lar~lA~~l 74 (444)
T 1g41_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMI----GPTGVGKTE---IARRLAKLA 74 (444)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEE----CCTTSSHHH---HHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEE----cCCCCCHHH---HHHHHHHHc
Confidence 35666666555443333333334444443332221 134568888 999999999 666555544
No 348
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=24.44 E-value=20 Score=37.07 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=20.1
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
..+.|.+. |.+|+|||+ .+..+..++
T Consensus 97 ~~~~i~i~----g~~G~GKTT---~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLV----GLQGSGKTT---TAAKLALYY 122 (295)
T ss_dssp SSEEEEEE----CCTTTTHHH---HHHHHHHHH
T ss_pred CCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 45677777 999999999 776666555
No 349
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=24.39 E-value=20 Score=39.47 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=20.0
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|++. |.+|+|||+ ++..+..++
T Consensus 97 ~~vI~lv----G~~GsGKTT---t~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLV----GVQGSGKTT---TAGKLAYFY 121 (433)
T ss_dssp SEEEEEC----CCTTSCHHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4566777 999999999 777777766
No 350
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=24.37 E-value=89 Score=32.84 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=36.4
Q ss_pred eeEeeecCCCCcccccCCCchhhHHHHHHHHHHcCCChhhHHHH
Q psy14295 412 YIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDV 455 (750)
Q Consensus 412 ~~~~~~~~~g~~~~~~~~~d~~~f~~~~~a~~~~gf~~~e~~~i 455 (750)
.+=|..|-.|.....++.+|.++++++-++|.. |++++|+.+|
T Consensus 257 hVgiGsDfDG~~~~p~gl~d~s~~p~L~~~L~~-g~se~~i~ki 299 (318)
T 3neh_A 257 NIGFGSDFDGIPDHVKGLEHVGKYQSFLETLEK-HYTKEEIEGF 299 (318)
T ss_dssp GEEECCCBTSCSSCBBTBSSGGGHHHHHHHHTT-TSCHHHHHHH
T ss_pred eEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 345666777766677899999999999999999 9999999888
No 351
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=24.12 E-value=21 Score=38.00 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=19.2
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...-|+|+ |.+|||||. -+..+.+.+
T Consensus 39 ~~~lIvI~----GPTgsGKTt---La~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLM----GATGTGKSR---LSIDLAAHF 64 (339)
T ss_dssp CCEEEEEE----CSTTSSHHH---HHHHHHTTS
T ss_pred CCceEEEE----CCCCCCHHH---HHHHHHHHC
Confidence 44578899 999999999 555554444
No 352
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=24.02 E-value=17 Score=36.23 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=19.4
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+-.|.|+ |++|||||+ .++.+-+.|
T Consensus 14 ~~iI~i~----g~~gsGk~~---i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIE----REYGSGGRI---VGKKLAEEL 38 (223)
T ss_dssp CEEEEEE----ECTTSCHHH---HHHHHHHHH
T ss_pred CeEEEEe----CCCCCCHHH---HHHHHHHHc
Confidence 3478889 999999999 776665554
No 353
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=23.71 E-value=18 Score=40.54 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=19.3
Q ss_pred HHHHhhh--cCCCeEEEeecCccccccccccc
Q psy14295 46 GYTHMKR--FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 46 ay~~~~~--~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+...+.- -...+.+.|. |++|||||+
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~----G~nGsGKST 54 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVS----GTSGTGKTL 54 (525)
T ss_dssp THHHHTTSSEETTSEEEEE----ESTTSSHHH
T ss_pred hHHHhcCCCCCCCeEEEEE----cCCCCCHHH
Confidence 4444443 2467888888 999999999
No 354
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=23.66 E-value=18 Score=35.04 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.1
Q ss_pred cccccccccccccccccchhhhh
Q psy14295 65 FLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 65 f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|.|--|||||+ -++.+.++|
T Consensus 5 ~EG~DGsGKsT---q~~~L~~~L 24 (197)
T 3hjn_A 5 FEGIDGSGKST---QIQLLAQYL 24 (197)
T ss_dssp EECSTTSSHHH---HHHHHHHHH
T ss_pred EECCCCCCHHH---HHHHHHHHH
Confidence 44999999999 888888877
No 355
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=23.35 E-value=21 Score=40.42 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=16.6
Q ss_pred cCCChhhHHHHHHHHHHHHHhC
Q psy14295 238 LQFSDEDIWDVFKLLAAVLHTG 259 (750)
Q Consensus 238 lG~~~~e~~~I~~iLaaILhLG 259 (750)
-|++...+..++.+|..+..-|
T Consensus 187 s~LD~~~~~~l~~~L~~l~~~g 208 (538)
T 1yqt_A 187 SYLDIRQRLNAARAIRRLSEEG 208 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHhcC
Confidence 3788888888888888776543
No 356
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=23.29 E-value=22 Score=40.31 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.1
Q ss_pred cCCCeEEEeecCccccccccccc
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~ 75 (750)
-...+.+-|. |++|||||+
T Consensus 22 ~~~Gei~gLi----GpNGaGKST 40 (538)
T 3ozx_A 22 PKNNTILGVL----GKNGVGKTT 40 (538)
T ss_dssp CCTTEEEEEE----CCTTSSHHH
T ss_pred CCCCCEEEEE----CCCCCcHHH
Confidence 3455677676 999999999
No 357
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=23.06 E-value=24 Score=31.66 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=8.8
Q ss_pred ccccccccc
Q psy14295 67 DEIGMGSET 75 (750)
Q Consensus 67 gESGaGKT~ 75 (750)
|.+|+|||.
T Consensus 12 G~~~~GKss 20 (168)
T 1z2a_A 12 GNGAVGKSS 20 (168)
T ss_dssp CSTTSSHHH
T ss_pred CcCCCCHHH
Confidence 999999999
No 358
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=22.97 E-value=26 Score=34.13 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.9
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.++|. |++|+|||.
T Consensus 29 ~G~l~~i~----G~pG~GKT~ 45 (251)
T 2zts_A 29 EGTTVLLT----GGTGTGKTT 45 (251)
T ss_dssp TTCEEEEE----CCTTSSHHH
T ss_pred CCeEEEEE----eCCCCCHHH
Confidence 56778888 999999998
No 359
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=22.92 E-value=23 Score=38.94 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
....|.+. |.+|+|||+ .+..+..++
T Consensus 97 ~~~vi~i~----G~~GsGKTT---~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLV----GLQGSGKTT---TAAKLALYY 122 (425)
T ss_dssp SSEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CCeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 35678787 999999999 777777666
No 360
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=22.92 E-value=21 Score=37.96 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.5
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.+.|. |++|||||+
T Consensus 130 ~G~i~~I~----G~~GsGKTT 146 (349)
T 1pzn_A 130 TQAITEVF----GEFGSGKTQ 146 (349)
T ss_dssp SSEEEEEE----ESTTSSHHH
T ss_pred CCeEEEEE----CCCCCCHHH
Confidence 55677777 999999999
No 361
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.69 E-value=28 Score=35.76 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=14.2
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
+.++|+ |+.|+|||.
T Consensus 32 ~~v~i~----G~~G~GKT~ 46 (350)
T 2qen_A 32 PLTLLL----GIRRVGKSS 46 (350)
T ss_dssp SEEEEE----CCTTSSHHH
T ss_pred CeEEEE----CCCcCCHHH
Confidence 789999 999999999
No 362
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=22.58 E-value=43 Score=32.78 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=20.1
Q ss_pred chhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 39 IFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 39 i~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
++.+=..|+..+... ..+++. +++|+|||.
T Consensus 52 ~~~~Q~~~i~~~~~~---~~~l~~----a~TGsGKT~ 81 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHG---RELLAS----APTGSGKTL 81 (245)
T ss_dssp CCHHHHHHHHHHHTT---CCEEEE----CCTTSCHHH
T ss_pred CCHHHHHHHHHHhCC---CCEEEE----CCCCCcHHH
Confidence 344445566555543 347777 999999998
No 363
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=22.57 E-value=22 Score=40.95 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.2
Q ss_pred CCCeEEEeecCccccccccccc
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~ 75 (750)
...+.+.|. |+||||||+
T Consensus 101 ~~Gei~~Lv----GpNGaGKST 118 (608)
T 3j16_B 101 RPGQVLGLV----GTNGIGKST 118 (608)
T ss_dssp CTTSEEEEE----CCTTSSHHH
T ss_pred CCCCEEEEE----CCCCChHHH
Confidence 456777777 999999999
No 364
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=22.43 E-value=18 Score=37.86 Aligned_cols=27 Identities=4% Similarity=0.081 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHH
Q psy14295 230 DIRSAMKVLQFSDEDIWDVFKLLAAVL 256 (750)
Q Consensus 230 ~l~~Al~~lG~~~~e~~~I~~iLaaIL 256 (750)
.+.+||+.+|+++.......++++++-
T Consensus 275 ~v~~aLe~~~L~~~r~~~y~~lls~~~ 301 (307)
T 1t9h_A 275 AVKQAVEDGELKQYRYDHYVEFMTEIK 301 (307)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHh
Confidence 477899999998877777777777653
No 365
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=22.31 E-value=21 Score=44.92 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.+.++.++
T Consensus 442 ~~G~~vaiv----G~sGsGKST---ll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALV----GSSGCGKST---IISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEE----ECSSSCHHH---HHHHHTTSS
T ss_pred cCCcEEEEE----ecCCCcHHH---HHHHhcccc
Confidence 566888888 999999999 888888876
No 366
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.30 E-value=33 Score=40.26 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=21.2
Q ss_pred cCCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 53 ~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
.+..-.+++. |++|+|||. .++.+.+.+
T Consensus 198 ~~~~~~vLL~----G~pGtGKT~---la~~la~~l 225 (758)
T 3pxi_A 198 RRTKNNPVLI----GEPGVGKTA---IAEGLAQQI 225 (758)
T ss_dssp CSSSCEEEEE----SCTTTTTHH---HHHHHHHHH
T ss_pred CCCCCCeEEE----CCCCCCHHH---HHHHHHHHH
Confidence 3556678888 999999999 666665554
No 367
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=22.29 E-value=20 Score=34.12 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=23.8
Q ss_pred CCCCcchhhhHHHHHHhhhcCCCeEEEeecCcccccccccccccccccchh
Q psy14295 34 ELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRKRTPTLST 84 (750)
Q Consensus 34 ~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~~~~~~k~~l 84 (750)
..+|..|. ..|+..+.. ++.+++. +++|+|||. .+-..+
T Consensus 31 ~~~l~~~Q--~~~i~~~~~---~~~~li~----~~tGsGKT~---~~~~~~ 69 (216)
T 3b6e_A 31 ELQLRPYQ--MEVAQPALE---GKNIIIC----LPTGSGKTR---VAVYIA 69 (216)
T ss_dssp CCCCCHHH--HHHHHHHHT---TCCEEEE----CSCHHHHHH---HHHHHH
T ss_pred CCCchHHH--HHHHHHHhc---CCCEEEE----cCCCCCHHH---HHHHHH
Confidence 34444443 345555553 3567787 999999998 554333
No 368
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.10 E-value=33 Score=37.36 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.4
Q ss_pred CeEEEeecCccccccccccc
Q psy14295 56 DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~ 75 (750)
++.+|+. |++|||||.
T Consensus 2 g~~~lv~----a~TGsGKT~ 17 (431)
T 2v6i_A 2 RELTVLD----LHPGAGKTR 17 (431)
T ss_dssp CCEEEEE----CCTTSCTTT
T ss_pred CCEEEEE----cCCCCCHHH
Confidence 5778888 999999999
No 369
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=22.09 E-value=24 Score=32.86 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=10.9
Q ss_pred EEeecCccccccccccc
Q psy14295 59 IFLKDLFLDEIGMGSET 75 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~ 75 (750)
|+|. |.+|+|||.
T Consensus 5 v~iv----G~~gvGKSt 17 (184)
T 2zej_A 5 LMIV----GNTGSGKTT 17 (184)
T ss_dssp EEEE----SCTTSSHHH
T ss_pred EEEE----CCCCCCHHH
Confidence 4555 999999999
No 370
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=21.97 E-value=19 Score=35.40 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=17.5
Q ss_pred EEEeecCcccccccccccccccccchhhhh
Q psy14295 58 CIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
-|+|+ |.+||||++ .++.+...+
T Consensus 13 II~it----Gk~~SGKd~---va~~l~~~~ 35 (202)
T 3ch4_B 13 VLLFS----GKRKSGKDF---VTEALQSRL 35 (202)
T ss_dssp EEEEE----ECTTSSHHH---HHHHHHHHH
T ss_pred EEEEE----CCCCCChHH---HHHHHHHHc
Confidence 45667 999999999 776665533
No 371
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=21.94 E-value=26 Score=32.43 Aligned_cols=14 Identities=14% Similarity=0.026 Sum_probs=12.0
Q ss_pred cccccccccccccccchhhhh
Q psy14295 67 DEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 67 gESGaGKT~~~~~~k~~l~~l 87 (750)
|.+|+|||. +++++
T Consensus 21 G~~~~GKss-------L~~~l 34 (198)
T 3t1o_A 21 GPGLSGKTT-------NLKWI 34 (198)
T ss_dssp CSTTSSHHH-------HHHHH
T ss_pred CCCCCCHHH-------HHHHH
Confidence 999999999 55666
No 372
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=21.89 E-value=25 Score=34.90 Aligned_cols=26 Identities=8% Similarity=-0.089 Sum_probs=17.6
Q ss_pred hHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 43 GDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 43 a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
=..|+..+...+ .+++. |++|+|||.
T Consensus 98 Q~~ai~~~~~~~---~~ll~----~~tG~GKT~ 123 (237)
T 2fz4_A 98 QEKALERWLVDK---RGCIV----LPTGSGKTH 123 (237)
T ss_dssp HHHHHHHHTTTS---EEEEE----ESSSTTHHH
T ss_pred HHHHHHHHHhCC---CEEEE----eCCCCCHHH
Confidence 344555555432 36677 999999999
No 373
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=21.79 E-value=41 Score=32.52 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 42 IGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 42 ~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+=..|+..+.. .+.+++. +++|+|||.
T Consensus 46 ~Q~~~i~~~~~---~~~~l~~----apTGsGKT~ 72 (228)
T 3iuy_A 46 IQSQAWPIILQ---GIDLIVV----AQTGTGKTL 72 (228)
T ss_dssp HHHHHHHHHHT---TCCEEEE----CCTTSCHHH
T ss_pred HHHHHHHHHhC---CCCEEEE----CCCCChHHH
Confidence 33455555553 2457777 999999998
No 374
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=21.77 E-value=29 Score=37.14 Aligned_cols=17 Identities=12% Similarity=0.352 Sum_probs=14.1
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
..+.+.|. |.||+|||+
T Consensus 214 ~G~~~~lv----G~sG~GKST 230 (358)
T 2rcn_A 214 TGRISIFA----GQSGVGKSS 230 (358)
T ss_dssp TTSEEEEE----CCTTSSHHH
T ss_pred CCCEEEEE----CCCCccHHH
Confidence 45677777 999999999
No 375
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=21.74 E-value=25 Score=40.79 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=17.0
Q ss_pred CCCeEEEeecCcccccccccccccccccch
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLS 83 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~ 83 (750)
...+.+.|. |+||||||+ -.+.+
T Consensus 346 ~~Ge~vaIi----GpnGsGKST---Ll~~i 368 (670)
T 3ux8_A 346 PLGTFVAVT----GVSGSGKST---LVNEV 368 (670)
T ss_dssp ETTSEEEEE----CSTTSSHHH---HHTTT
T ss_pred cCCCEEEEE----eeCCCCHHH---HHHHH
Confidence 355677777 999999999 55443
No 376
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.63 E-value=29 Score=36.00 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=19.5
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|+++ |.+|+|||+ .+..+..++
T Consensus 98 ~~vi~i~----G~~G~GKTT---~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLV----GVQGTGKTT---TAGKLAYFY 122 (297)
T ss_dssp SEEEEEE----CSSCSSTTH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4577777 999999999 776666655
No 377
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=21.63 E-value=27 Score=31.19 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=11.0
Q ss_pred EEeecCccccccccccc
Q psy14295 59 IFLKDLFLDEIGMGSET 75 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~ 75 (750)
|++. |.+|+|||.
T Consensus 7 i~v~----G~~~~GKss 19 (168)
T 1u8z_A 7 VIMV----GSGGVGKSA 19 (168)
T ss_dssp EEEE----CSTTSSHHH
T ss_pred EEEE----CCCCCCHHH
Confidence 5555 999999999
No 378
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=21.23 E-value=25 Score=37.51 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=11.7
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
-.+|. |++|||||+
T Consensus 25 ~~~i~----G~NGaGKTT 38 (365)
T 3qf7_A 25 ITVVE----GPNGAGKSS 38 (365)
T ss_dssp EEEEE----CCTTSSHHH
T ss_pred eEEEE----CCCCCCHHH
Confidence 44566 999999999
No 379
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.17 E-value=28 Score=32.43 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=11.7
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
.|++. |.+|+|||.
T Consensus 50 ~i~vv----G~~g~GKSs 63 (193)
T 2ged_A 50 SIIIA----GPQNSGKTS 63 (193)
T ss_dssp EEEEE----CCTTSSHHH
T ss_pred EEEEE----CCCCCCHHH
Confidence 45666 999999998
No 380
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=20.83 E-value=37 Score=37.29 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=15.1
Q ss_pred CCeEEEeecCccccccccccc
Q psy14295 55 QDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~ 75 (750)
.++.+|++ +++|||||.
T Consensus 20 ~~~~vlv~----a~TGsGKT~ 36 (459)
T 2z83_A 20 KRQMTVLD----LHPGSGKTR 36 (459)
T ss_dssp TTCEEEEC----CCTTSCTTT
T ss_pred cCCcEEEE----CCCCCCHHH
Confidence 46788888 999999999
No 381
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=20.80 E-value=25 Score=44.13 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=21.5
Q ss_pred CCCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 54 GQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 54 ~~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..+.+.|. |+||||||+ -.+.++.++
T Consensus 414 ~~G~~~~iv----G~sGsGKST---l~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALV----GNSGCGKST---TVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEE----CCSSSSHHH---HHHHTTTSS
T ss_pred cCCCEEEEE----CCCCCCHHH---HHHHHhCCC
Confidence 556788777 999999999 777776665
No 382
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.72 E-value=31 Score=35.88 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=11.4
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
-.+|. |++|||||.
T Consensus 26 ~~~i~----G~NGsGKS~ 39 (322)
T 1e69_A 26 VTAIV----GPNGSGKSN 39 (322)
T ss_dssp EEEEE----CCTTTCSTH
T ss_pred cEEEE----CCCCCcHHH
Confidence 44555 999999999
No 383
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=20.66 E-value=27 Score=39.25 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.9
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...|++. |-+|||||+ -++.+.++|
T Consensus 35 ~~lIvlv----GlpGSGKST---ia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMV----GLPARGKTY---ISKKLTRYL 59 (520)
T ss_dssp CEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CeEEEEE----CCCCCCHHH---HHHHHHHHH
Confidence 4567777 999999999 888887777
No 384
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=20.64 E-value=33 Score=35.91 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=29.3
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCCCcchhhhHHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 12 PYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 12 P~~~~~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
+|..+++ ++...+......... |.. +=..|+..+... ..+++. +++|+|||.
T Consensus 22 ~f~~~~l-~~~l~~~l~~~g~~~--~~~--~Q~~~i~~i~~~---~~~lv~----~~TGsGKT~ 73 (394)
T 1fuu_A 22 KFDDMEL-DENLLRGVFGYGFEE--PSA--IQQRAIMPIIEG---HDVLAQ----AQSGTGKTG 73 (394)
T ss_dssp SSGGGCC-CHHHHHHHHHHTCCS--CCH--HHHHHHHHHHHT---CCEEEC----CCSSHHHHH
T ss_pred ChhhcCC-CHHHHHHHHHcCCCC--CCH--HHHHHHHHHhCC---CCEEEE----CCCCChHHH
Confidence 3445554 445555444333222 322 334556666553 347777 999999998
No 385
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=20.57 E-value=29 Score=31.05 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=11.0
Q ss_pred EEeecCccccccccccc
Q psy14295 59 IFLKDLFLDEIGMGSET 75 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~ 75 (750)
|++. |.+|+|||.
T Consensus 6 i~v~----G~~~~GKss 18 (167)
T 1c1y_A 6 LVVL----GSGGVGKSA 18 (167)
T ss_dssp EEEE----CSTTSSHHH
T ss_pred EEEE----CCCCCCHHH
Confidence 5555 999999999
No 386
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=20.55 E-value=25 Score=37.45 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=12.1
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
.-.+|. ||+|||||.
T Consensus 26 gl~vi~----G~NGaGKT~ 40 (371)
T 3auy_A 26 GIVAII----GENGSGKSS 40 (371)
T ss_dssp EEEEEE----ECTTSSHHH
T ss_pred CeEEEE----CCCCCCHHH
Confidence 345666 999999998
No 387
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=20.53 E-value=28 Score=38.45 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=20.6
Q ss_pred CeEEEeecCcccccccccccccccccchhhhh
Q psy14295 56 DQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
+..|++. |.+|+|||+ ++..+..++
T Consensus 100 p~vIliv----G~~G~GKTT---t~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMV----GIQGSGKTT---TVAKLARYF 124 (443)
T ss_dssp SEEEEEE----CCTTSSHHH---HHHHHHHHH
T ss_pred CeEEEEE----CcCCCCHHH---HHHHHHHHH
Confidence 5677777 999999999 877777777
No 388
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=20.43 E-value=52 Score=33.38 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHhhhcCCCeEEEeecCccccccccccc
Q psy14295 44 DNGYTHMKRFGQDQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 44 ~~ay~~~~~~~~~QsIiis~~f~gESGaGKT~ 75 (750)
..|+..+.. ++.+++. +++|+|||.
T Consensus 22 ~~~i~~i~~---~~~~lv~----~~TGsGKT~ 46 (337)
T 2z0m_A 22 SKTIPLMLQ---GKNVVVR----AKTGSGKTA 46 (337)
T ss_dssp HHHHHHHHT---TCCEEEE----CCTTSSHHH
T ss_pred HHHHHHHhc---CCCEEEE----cCCCCcHHH
Confidence 345555553 2457788 999999998
No 389
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=20.37 E-value=30 Score=31.53 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=11.4
Q ss_pred EEEeecCccccccccccc
Q psy14295 58 CIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 58 sIiis~~f~gESGaGKT~ 75 (750)
.|++. |.+|+|||.
T Consensus 10 ~i~v~----G~~~~GKSs 23 (182)
T 1ky3_A 10 KVIIL----GDSGVGKTS 23 (182)
T ss_dssp EEEEE----CCTTSSHHH
T ss_pred EEEEE----CCCCCCHHH
Confidence 35555 999999999
No 390
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=20.34 E-value=37 Score=34.87 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=14.0
Q ss_pred eEEEeecCccccccccccc
Q psy14295 57 QCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 57 QsIiis~~f~gESGaGKT~ 75 (750)
..++|+ |++|+|||.
T Consensus 31 ~~v~i~----G~~G~GKT~ 45 (357)
T 2fna_A 31 PITLVL----GLRRTGKSS 45 (357)
T ss_dssp SEEEEE----ESTTSSHHH
T ss_pred CcEEEE----CCCCCCHHH
Confidence 688999 999999999
No 391
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=20.31 E-value=30 Score=31.18 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=8.8
Q ss_pred ccccccccc
Q psy14295 67 DEIGMGSET 75 (750)
Q Consensus 67 gESGaGKT~ 75 (750)
|.+|+|||.
T Consensus 13 G~~~~GKss 21 (170)
T 1z08_A 13 GEGCVGKTS 21 (170)
T ss_dssp CCTTSCHHH
T ss_pred CcCCCCHHH
Confidence 999999999
No 392
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=20.28 E-value=23 Score=34.54 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=17.6
Q ss_pred EEeecCcccccccccccccccccchhhhh
Q psy14295 59 IFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 59 Iiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
|+|- |--|||||+ -++.+.++|
T Consensus 5 I~~E----G~dGsGKsT---q~~~L~~~L 26 (205)
T 4hlc_A 5 ITFE----GPEGSGKTT---VINEVYHRL 26 (205)
T ss_dssp EEEE----CCTTSCHHH---HHHHHHHHH
T ss_pred EEEE----CCCCCcHHH---HHHHHHHHH
Confidence 5555 999999999 777777776
No 393
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=20.20 E-value=27 Score=38.37 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=19.7
Q ss_pred CCeEEEeecCcccccccccccccccccchhhhh
Q psy14295 55 QDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFK 87 (750)
Q Consensus 55 ~~QsIiis~~f~gESGaGKT~~~~~~k~~l~~l 87 (750)
...+|++. |++|+|||. .++.+...+
T Consensus 166 ~~~~vLL~----GppGtGKT~---lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLF----GPPGTGKSY---LAKAVATEA 191 (444)
T ss_dssp CCSEEEEE----CSTTSSHHH---HHHHHHHHC
T ss_pred CCceEEEE----CCCCCCHHH---HHHHHHHHc
Confidence 45789998 999999999 665554433
No 394
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=20.14 E-value=33 Score=34.07 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=13.7
Q ss_pred CeEEEeecCccccccccccc
Q psy14295 56 DQCIFLKDLFLDEIGMGSET 75 (750)
Q Consensus 56 ~QsIiis~~f~gESGaGKT~ 75 (750)
..-+++. |+.|+|||+
T Consensus 12 G~i~lit----G~mGsGKTT 27 (223)
T 2b8t_A 12 GWIEFIT----GPMFAGKTA 27 (223)
T ss_dssp CEEEEEE----CSTTSCHHH
T ss_pred cEEEEEE----CCCCCcHHH
Confidence 4667777 999999999
Done!