RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14295
(750 letters)
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 455 bits (1173), Expect = e-149
Identities = 134/374 (35%), Positives = 196/374 (52%), Gaps = 43/374 (11%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY G +LVA+NPY+ LPIY + I Y + +G++ PHIFA+ + Y M R ++Q I
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSI- 159
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQIL 120
+ E G G K T+S K M+ + +E ++L
Sbjct: 160 ---IVSGESGAG----K---TVSA--KY----AMRYFATVSG------SASEANVEEKVL 197
Query: 121 EANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDER 180
+NPI+E+ GNAKT RNDNSSRFGKYI+I F+ + I GA + YLLEKSR+V Q+++ER
Sbjct: 198 ASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEER 257
Query: 181 NYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240
NYH+FY + A + E L L +A+ + Y GGS +G DDA E + R A +L
Sbjct: 258 NYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGI 317
Query: 241 SDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLIDALTR 281
SD +F++LA +LH GN+++ ++ V + + L
Sbjct: 318 SDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCH 377
Query: 282 KTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVL 341
+ ET I +S+ +++ RDA K IY LF +I +N A++ Q +GVL
Sbjct: 378 RKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSF-IGVL 436
Query: 342 DIFGFENFNTNSGE 355
DI+GFE F NS E
Sbjct: 437 DIYGFETFEINSFE 450
Score = 201 bits (513), Expect = 7e-55
Identities = 57/181 (31%), Positives = 79/181 (43%), Gaps = 61/181 (33%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHSW--IEQQILEANPILEAFGNAKTIRNDNSSRFG 410
SGESGAGKT S K ++Y A +SG S +E+++L +NPI+E+ GNAKT RNDNSSRFG
Sbjct: 162 SGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFG 221
Query: 411 KYIDIHFNSQ----GGSIT-------------------------CEGRDDA--------- 432
KYI+I F+ + G ++ C
Sbjct: 222 KYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGN 281
Query: 433 ---------------------AEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFE 471
E + R A +L SD +F++LA +LH GN+ F
Sbjct: 282 ANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFA 341
Query: 472 Q 472
Sbjct: 342 S 342
Score = 200 bits (510), Expect = 2e-54
Identities = 57/115 (49%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMA 529
FEQFCINYANE LQQ F H+FKLEQEEY E I W I+F DNQ ++LI ++ ++
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 530 LIDEESKFPKGTDHTLLAKLHKTH-GLHRNYLKPKSDINTSFGLNHFAGVVFYDT 583
L+DEE K PKG+D T KL+ TH + KP+ N +F + HFA V Y
Sbjct: 508 LLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLS-NKAFIIKHFADKVEYQC 561
Score = 83.5 bits (207), Expect = 1e-16
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 21 AEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGMGSETRK-RT 79
EQIK+ K K +L P +F + + + + +T K
Sbjct: 574 EEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHK 633
Query: 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI--------LEANPILEA 128
T+ QF+ SL LM+TL+ P ++RCIKPN+FK P L A +LE
Sbjct: 634 KTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLET 690
Score = 50.3 bits (121), Expect = 2e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 585 ERDRVLTRNILVLQKNIRGWVYRRRYKRLRAA 616
R L + +QK IRGW+ R++Y R+R
Sbjct: 762 IRADKLRAACIRIQKTIRGWLMRKKYMRMRRG 793
Score = 47.6 bits (114), Expect = 1e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 608 RRYKRLRAATMTIQKYWKGWAQRRRYQRMR 637
R +LRAA + IQK +GW R++Y RMR
Sbjct: 762 IRADKLRAACIRIQKTIRGWLMRKKYMRMR 791
Score = 33.8 bits (78), Expect = 0.26
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 685 AIVKIQAHVRRMIAQRHYQKLQ 706
A ++IQ +R + ++ Y +++
Sbjct: 770 ACIRIQKTIRGWLMRKKYMRMR 791
Score = 31.8 bits (73), Expect = 0.86
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 655 RFRHLRGHIVGLQARARGYLTRRMYAQKMWA 685
R LR + +Q RG+L R+ Y +
Sbjct: 763 RADKLRAACIRIQKTIRGWLMRKKYMRMRRG 793
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 452 bits (1164), Expect = e-149
Identities = 156/373 (41%), Positives = 210/373 (56%), Gaps = 40/373 (10%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G LVAVNP++ +PIYT E + ++K ++ E+ PHIFAI D Y M Q+Q +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSL- 175
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQIL 120
L E G G K T +T KK + L Q ++ QIL
Sbjct: 176 ---LITGESGAG----K---TENT--KKVIQYLASVAGRNQANGSGVLE-------QQIL 216
Query: 121 EANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDER 180
+ANPILEAFGNAKT RN+NSSRFGK+I+I FNS G I GA I+ YLLEKSR+V QS+ ER
Sbjct: 217 QANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETER 276
Query: 181 NYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240
NYH+FY +LAG + +EK AL L + YL G + +G D+ EF R AM ++ F
Sbjct: 277 NYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGF 336
Query: 241 SDEDIWDVFKLLAAVLHTGNIKYKA-----AVIA-------------VPKQPLIDALTRK 282
S E+ +FK++A +LH GNIK++ AV+ V L AL
Sbjct: 337 SQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEP 396
Query: 283 TFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLD 342
A + V L+ E+S RDA VK +YGRLF+++ KIN+ + + + +GVLD
Sbjct: 397 RILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERKA--YFIGVLD 454
Query: 343 IFGFENFNTNSGE 355
I+GFE F NS E
Sbjct: 455 IYGFEIFKVNSFE 467
Score = 202 bits (517), Expect = 2e-55
Identities = 70/184 (38%), Positives = 93/184 (50%), Gaps = 64/184 (34%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHSW-----IEQQILEANPILEAFGNAKTIRNDNSS 407
+GESGAGKTE+TK ++QYLA+++G++ +EQQIL+ANPILEAFGNAKT RN+NSS
Sbjct: 178 TGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSS 237
Query: 408 RFGKYIDIHFNSQ----GGSIT-------------------------CEGRDD------- 431
RFGK+I+I FNS G SI G
Sbjct: 238 RFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALH 297
Query: 432 -----------------------AAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNI 468
+ EF R AM ++ FS E+ +FK++A +LH GNI
Sbjct: 298 LAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNI 357
Query: 469 NFEQ 472
FE+
Sbjct: 358 KFEK 361
Score = 194 bits (495), Expect = 1e-52
Identities = 59/117 (50%), Positives = 76/117 (64%), Gaps = 4/117 (3%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLI-AIKQLNI 527
FEQ CINY NE LQQFF H+FKLEQEEY E INW I+F +D+Q +DLI + I
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 528 MALIDEESKFPKGTDHTLLAKLHKTH-GLHRNYLKPKSDINTSFGLNHFAGVVFYDT 583
+AL+DE+S FP TD+TL+ KLH + Y +P+ T FG+ H+AG V Y+
Sbjct: 526 LALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS-KTEFGVTHYAGQVMYEI 581
Score = 88.1 bits (219), Expect = 4e-18
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 57 QCIFLKDLFLDEIGMGSETRK-RTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKK 115
+ LF D + T++ Q+K+ L LM TL P F+RCI PN +
Sbjct: 604 SDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 116 PMQI--------LEANPILEAFGNAKTIR 136
P ++ L N +LE IR
Sbjct: 664 PAKLEDKVVLDQLRCNGVLE------GIR 686
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 445 bits (1147), Expect = e-147
Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 56/384 (14%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY G ++++ NP++ L IY IK Y + E+PPH++A+ ++ Y M++ ++QC+
Sbjct: 39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCV- 97
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMK---TLSNCQPFFIRCIKPNEFKKPM 117
+ E G G K T ++ KK +M+ +S+ Q I
Sbjct: 98 ---IISGESGAG----K---TEAS--KK----IMQFLTFVSSNQSPNGERIS-------K 134
Query: 118 QILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSK 177
+L++NP+LEAFGNAKT+RNDNSSRFGKY+++ FN+ G G KI YLLEKSR+V +++
Sbjct: 135 MLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQ 194
Query: 178 DERNYHVFYCILAGLSKDEKMALELT-DASQYRYLTGGGSITCEGRDDAAEFADIRSAMK 236
ER++H+FY +L GLS+ + L LT +A Y YL G DD+ EF I AM+
Sbjct: 195 GERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAME 254
Query: 237 VLQFSDEDIWDVFKLLAAVLHTGNIKYK-----------------------AAVIAVPKQ 273
L + D ++++LAA+LH GNI + A+ + +Q
Sbjct: 255 TLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQ 314
Query: 274 PLIDALTRKTFFA----QGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYR 329
L AL ++ + + + Q+ RDA K +Y RLF ++ KIN+ I
Sbjct: 315 SLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINC 374
Query: 330 PKNQARSAMGVLDIFGFENFNTNS 353
+ +G+LDI+GFE F NS
Sbjct: 375 TTEKGPV-IGILDIYGFEVFQNNS 397
Score = 202 bits (515), Expect = 1e-55
Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 64/193 (33%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHS----WIEQQILEANPILEAFGNAKTIRNDNSSR 408
SGESGAGKTE++K I+Q+L +S S I + +L++NP+LEAFGNAKT+RNDNSSR
Sbjct: 100 SGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSR 159
Query: 409 FGKYIDIHFNSQ----GGSIT-------------------------CEGRDD-------- 431
FGKY+++ FN+ GG IT +G
Sbjct: 160 FGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGL 219
Query: 432 -----------------------AAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNI 468
+ EF I AM+ L + D ++++LAA+LH GNI
Sbjct: 220 TPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNI 279
Query: 469 NFEQFCINYANEN 481
F +
Sbjct: 280 TFAEAAEQRTGTT 292
Score = 201 bits (514), Expect = 2e-55
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMA 529
FEQ IN+ NE LQQ F++ K EQEEY E I W++IE+ +N+ +LI K + +++
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 530 LIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPK-----SDINTSFGLNHFAGVVFYDT 583
L+DE K TD T L + K + + S +T F L H+AG V YD
Sbjct: 458 LLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDV 516
Score = 91.5 bits (228), Expect = 4e-19
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 57 QCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKP 116
++ LF +++KR T +QF+ +++ L+ TL C P ++RCIK N+ K+
Sbjct: 539 SDPLVQGLFPP--TRPEDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQA 596
Query: 117 MQI 119
I
Sbjct: 597 GVI 599
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 442 bits (1138), Expect = e-144
Identities = 133/376 (35%), Positives = 192/376 (51%), Gaps = 38/376 (10%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G V VNPY+ LP+YT E + Y+ KK E PPHIF+I DN Y +M ++Q I
Sbjct: 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSI- 174
Query: 61 LKDLFLDEIGMG-SETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI 119
L E G G + KR Q+ + + Q ++ QI
Sbjct: 175 ---LITGESGAGKTVNTKRV----IQYFAVIAAIGDRSKKDQSPGKGTLE-------DQI 220
Query: 120 LEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDE 179
++ANP LEAFGNAKT+RNDNSSRFGK+I IHF + G + A IE YLLEKSR++ Q K E
Sbjct: 221 IQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAE 280
Query: 180 RNYHVFYCILAGLSKDEKMALELT-DASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVL 238
R+YH+FY IL+ + L +T + Y +++ G T DDA E +A VL
Sbjct: 281 RDYHIFYQILSNKKPELLDMLLITNNPYDYAFIS-QGETTVASIDDAEELMATDNAFDVL 339
Query: 239 QFSDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLIDAL 279
F+ E+ ++KL A++H GN+K+K A ++ + L+ L
Sbjct: 340 GFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGL 399
Query: 280 TRKTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMG 339
E V + +Q + A K +Y R+F ++ +IN+ + + + +G
Sbjct: 400 CHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYF-IG 458
Query: 340 VLDIFGFENFNTNSGE 355
VLDI GFE F+ NS E
Sbjct: 459 VLDIAGFEIFDFNSFE 474
Score = 195 bits (497), Expect = 8e-53
Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQLNIM 528
FEQ CIN+ NE LQQFF H+F LEQEEY E I W I+F +D Q +DLI K + IM
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 529 ALIDEESKFPKGTDHTLLAKLHKTH-GLHRNYLKPK---SDINTSFGLNHFAGVVFYDT 583
++++EE FPK TD T AKL H G N+ KP+ F L H+AG+V Y+
Sbjct: 532 SILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNI 590
Score = 155 bits (393), Expect = 2e-39
Identities = 44/80 (55%), Positives = 55/80 (68%), Gaps = 11/80 (13%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKH-----------SWIEQQILEANPILEAFGNAKTI 401
+GESGAGKT +TK ++QY A I+ +E QI++ANP LEAFGNAKT+
Sbjct: 177 TGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTV 236
Query: 402 RNDNSSRFGKYIDIHFNSQG 421
RNDNSSRFGK+I IHF + G
Sbjct: 237 RNDNSSRFGKFIRIHFGATG 256
Score = 86.6 bits (215), Expect = 1e-17
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 416 HFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQ 472
F SQG T DDA E +A VL F+ E+ ++KL A++H GN+ F+
Sbjct: 311 AFISQG-ETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKL 366
Score = 77.3 bits (191), Expect = 8e-15
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 17/89 (19%)
Query: 57 QCIFLKDLFLDEIGMGSETRK---------RTPTLSTQFKKSLDCLMKTLSNCQPFFIRC 107
L LF + G + K T+S +++L+ LM L + P F+RC
Sbjct: 613 SLKLLSTLFANYAGADAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRC 672
Query: 108 IKPNEFKKPMQI--------LEANPILEA 128
I PNE K P + L N +LE
Sbjct: 673 IIPNETKSPGVMDNPLVMHQLRCNGVLEG 701
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 444 bits (1145), Expect = e-143
Identities = 136/377 (36%), Positives = 200/377 (53%), Gaps = 43/377 (11%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G V +NPY+ LPIYT +++Y+ KK E+PPH++A+ + Y M + +DQ I
Sbjct: 91 TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSI- 149
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMK---TLSNCQPFFIRCIKPNEFKKPM 117
L E G G K T +T KK +++ +++ P E ++
Sbjct: 150 ---LCTGESGAG----K---TENT--KK----VIQYLAHVASSPKGRKEPGVPGELER-- 191
Query: 118 QILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSK 177
Q+L+ANPILEAFGNAKT++NDNSSRFGK+I I+F+ G I GA IE YLLEKSR + Q+K
Sbjct: 192 QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAK 251
Query: 178 DERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKV 237
DE ++H+FY +L G + K L L S YR+LT G S + F + +++V
Sbjct: 252 DECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSS--SPGQERELFQETLESLRV 309
Query: 238 LQFSDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLIDA 278
L FS E+I + ++++AVL GNI K ++ + A
Sbjct: 310 LGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRA 369
Query: 279 LTRKTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAM 338
L + V ++EQ+ +A K Y RLF ++ ++N A+ R Q S +
Sbjct: 370 LLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFL 429
Query: 339 GVLDIFGFENFNTNSGE 355
G+LDI GFE F NS E
Sbjct: 430 GILDIAGFEIFQLNSFE 446
Score = 198 bits (505), Expect = 2e-53
Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIA--IKQLN 526
FEQ CINY NE LQQ F +F LEQEEY E I W ++F +D Q +DLI
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 527 IMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDI-NTSFGLNHFAGVVFYDTR 584
++AL+DEE FPK TD + + K+ + G H + +P+ F + H+AG V Y
Sbjct: 505 LLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKAN 563
Score = 196 bits (501), Expect = 8e-53
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 66/186 (35%)
Query: 353 SGESGAGKTESTKLILQYLAAISG---------KHSWIEQQILEANPILEAFGNAKTIRN 403
+GESGAGKTE+TK ++QYLA ++ +E+Q+L+ANPILEAFGNAKT++N
Sbjct: 152 TGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKN 211
Query: 404 DNSSRFGKYIDIHFNSQ----GGSIT-------------------------CEGRDD--- 431
DNSSRFGK+I I+F+ G +I G +
Sbjct: 212 DNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLK 271
Query: 432 -------------------------AAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTG 466
F + +++VL FS E+I + ++++AVL G
Sbjct: 272 ADLLLEPCSHYRFLTNGPSSSPGQERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFG 331
Query: 467 NINFEQ 472
NI ++
Sbjct: 332 NIALKR 337
Score = 88.2 bits (219), Expect = 4e-18
Identities = 21/188 (11%), Positives = 56/188 (29%), Gaps = 23/188 (12%)
Query: 576 AGVVFYDTRERDRVLTRNILVLQKN--IRGWVYRRRYKR---LRAATMTIQKYWKGWAQR 630
AGV+ ER T++ + + N ++ ++ + ++Q + +
Sbjct: 744 AGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEY 803
Query: 631 RRYQRMR--VGYMRLQALIRSRLLSHRFRH--------------LRGHIVGLQARARGYL 674
++ ++ L+A+ S R + L+ + +
Sbjct: 804 KKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHA 863
Query: 675 TRRMYAQKMW--AIVKIQAHVRRMIAQRHYQKLQFEYQSQIEALKLKRKEERELKEAGNK 732
K V +Q + R + ++ + Y E + +LK
Sbjct: 864 EALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAF 923
Query: 733 RAKEIAEQ 740
+ + +
Sbjct: 924 DGECQSLE 931
Score = 82.8 bits (205), Expect = 2e-16
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 29/103 (28%)
Query: 57 QCIFLKDLFLDEIGMGSE---------------TRKRTPTLSTQFKKSLDCLMKTLSNCQ 101
+++ D G+ R T+ +K+SL LM TLSN
Sbjct: 585 TDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTN 644
Query: 102 PFFIRCIKPNEFKKPMQI--------LEANPILEAFGNAKTIR 136
P F+RCI PN K+ ++ L N +LE IR
Sbjct: 645 PSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLE------GIR 681
Score = 48.5 bits (116), Expect = 7e-06
Identities = 17/157 (10%), Positives = 36/157 (22%), Gaps = 21/157 (13%)
Query: 586 RDRVLTRNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRMRVGYMRLQA 645
+ + L+ + R + + + L+
Sbjct: 807 EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVA---------PAGLTPNEIDSTWSALEK 857
Query: 646 LIRSRLLSHRFRHLRGH--IVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQ 703
+ + R R V LQ R +A +
Sbjct: 858 AEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTK----------SVYLGSNETG 907
Query: 704 KLQFEYQSQIEALKLKRKEERELKEAGNKRAKEIAEQ 740
Q++++ L+ E + L+ N I Q
Sbjct: 908 DSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 944
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 441 bits (1137), Expect = e-142
Identities = 154/373 (41%), Positives = 206/373 (55%), Gaps = 40/373 (10%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G LVAVNP++ +PIYT E + ++K ++ E+ PHIFAI D Y M Q+Q +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSL- 175
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQIL 120
L E G G K T +T KK + L Q ++ QIL
Sbjct: 176 ---LITGESGAG----K---TENT--KKVIQYLASVAGRNQANGSGVLE-------QQIL 216
Query: 121 EANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDER 180
+ANPILEAFGNAKT RN+NSS FGK+I+I FN+ G I GA I+ YLLEKSR+V QS+ ER
Sbjct: 217 QANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETER 276
Query: 181 NYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240
NYH+FY +LAG + +EK AL L + YL G + +G D EF R AM ++ F
Sbjct: 277 NYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGF 336
Query: 241 SDEDIWDVFKLLAAVLHTGNIKYKA-----AVIA-------------VPKQPLIDALTRK 282
S E+ +FK++A +LH GNIK++ AV+ V L AL
Sbjct: 337 SQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEP 396
Query: 283 TFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLD 342
A + V L+ E+S RDA VK +YGRLF+++ KIN+ + + +GVLD
Sbjct: 397 RILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSERKA--YFIGVLD 454
Query: 343 IFGFENFNTNSGE 355
I GFE F NS E
Sbjct: 455 ISGFEIFKVNSFE 467
Score = 197 bits (504), Expect = 4e-53
Identities = 68/184 (36%), Positives = 91/184 (49%), Gaps = 64/184 (34%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHSW-----IEQQILEANPILEAFGNAKTIRNDNSS 407
+GESGAGKTE+TK ++QYLA+++G++ +EQQIL+ANPILEAFGNAKT RN+NSS
Sbjct: 178 TGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSS 237
Query: 408 RFGKYIDIHFNSQ----GGSIT-------------------------CEGRDD------- 431
FGK+I+I FN+ G SI G
Sbjct: 238 EFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALH 297
Query: 432 -----------------------AAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNI 468
EF R AM ++ FS E+ +FK++A +LH GNI
Sbjct: 298 LAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNI 357
Query: 469 NFEQ 472
FE+
Sbjct: 358 KFEK 361
Score = 190 bits (485), Expect = 1e-50
Identities = 58/117 (49%), Positives = 76/117 (64%), Gaps = 4/117 (3%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLI-AIKQLNI 527
FEQ CINY NE LQQFF H+FK+EQEEY E INW I+F +D+Q +DLI + I
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 528 MALIDEESKFPKGTDHTLLAKLHKTH-GLHRNYLKPKSDINTSFGLNHFAGVVFYDT 583
+AL+DE+S FP TD+TL+ KLH + Y +P+ T FG+ H+AG V Y+
Sbjct: 526 LALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS-KTEFGVTHYAGQVMYEI 581
Score = 86.3 bits (214), Expect = 2e-17
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 57 QCIFLKDLFLDEIGMGSETRK-RTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKK 115
+ LF D + T++ Q+K+ L LM TL P F+RCI PN +
Sbjct: 604 SDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 663
Query: 116 PMQI--------LEANPILEAFGNAKTIR 136
P ++ L N +LE IR
Sbjct: 664 PAKLEDKVVLDQLRCNGVLE------GIR 686
Score = 77.4 bits (191), Expect = 1e-14
Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 3/165 (1%)
Query: 576 AGVVFYDTRERDRVLTRNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQR 635
AG + R++ L R + + A++ + + + +
Sbjct: 748 AGQLARIEEAREQRLGSEQTKSDYLKRANELVQWI-NDKQASLESRDFGDSIESVQSFMN 806
Query: 636 MRVGYMRLQALIRSRLLSHRFRHLRGHIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRR 695
Y + + + + +S L+ R A +
Sbjct: 807 AHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKA 866
Query: 696 MIAQRHYQKLQFEYQSQIEALKLKRKEERELKEAGNKRAKEIAEQ 740
Q H + L+ E + Q + L +K R LK+ N +
Sbjct: 867 --EQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYL 909
Score = 37.3 bits (87), Expect = 0.020
Identities = 16/157 (10%), Positives = 43/157 (27%), Gaps = 15/157 (9%)
Query: 584 RERDRVLTRNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRMRVGYMRL 643
+ T + L + R KR + + +QKY + + + + Y+
Sbjct: 852 TPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGS 911
Query: 644 QALIRSRLLSHRFRHLRGHIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQ 703
I +QA+ + Q + + + + ++AQ
Sbjct: 912 -------------NETGDSITAVQAKLKNLEAFDGECQSLEG--QSNSDLLSILAQLTEL 956
Query: 704 KLQFEYQSQIEALKLKRKEERELKEAGNKRAKEIAEQ 740
+ ++ +K + + +
Sbjct: 957 NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAE 993
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 442 bits (1139), Expect = e-141
Identities = 132/374 (35%), Positives = 196/374 (52%), Gaps = 43/374 (11%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY G +LVA+NPY+ LPIY + I Y + +G++ PHIFA+ + Y M R ++Q I
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSI- 159
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQIL 120
+ E G G T+S ++ M+ + +E ++L
Sbjct: 160 ---IVSGESGAGK-------TVSAKY------AMRYFATV------SGSASEANVEEKVL 197
Query: 121 EANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDER 180
+NPI+E+ GNAKT RNDNSSRFGKYI+I F+ + I GA + YLLEKSR+V Q+++ER
Sbjct: 198 ASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEER 257
Query: 181 NYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240
NYH+FY + A + E L L +A+ + Y GGS +G DDA E + R A +L
Sbjct: 258 NYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGI 317
Query: 241 SDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLIDALTR 281
SD +F++LA +LH GN+++ ++ V + + L
Sbjct: 318 SDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCH 377
Query: 282 KTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVL 341
+ ET I +S+ +++ RDA K IY LF +I +N A++ Q +GVL
Sbjct: 378 RKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSF-IGVL 436
Query: 342 DIFGFENFNTNSGE 355
DI+GFE F NS E
Sbjct: 437 DIYGFETFEINSFE 450
Score = 198 bits (504), Expect = 5e-53
Identities = 57/116 (49%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMA 529
FEQFCINYANE LQQ F H+FKLEQEEY E I W I+F DNQ ++LI ++ ++
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 530 LIDEESKFPKGTDHTLLAKLHKTH-GLHRNYLKPKSDINTSFGLNHFAGVVFYDTR 584
L+DEE K PKG+D T KL+ TH + KP+ N +F + HFA V Y
Sbjct: 508 LLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLS-NKAFIIKHFADKVEYQCE 562
Score = 138 bits (349), Expect = 9e-34
Identities = 41/71 (57%), Positives = 54/71 (76%), Gaps = 2/71 (2%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHSW--IEQQILEANPILEAFGNAKTIRNDNSSRFG 410
SGESGAGKT S K ++Y A +SG S +E+++L +NPI+E+ GNAKT RNDNSSRFG
Sbjct: 162 SGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFG 221
Query: 411 KYIDIHFNSQG 421
KYI+I F+ +
Sbjct: 222 KYIEIGFDKRY 232
Score = 124 bits (313), Expect = 2e-29
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 576 AGVVFYDTRERDRVLTRNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQR 635
AG V Y + R L + +QK IRGW+ R++Y R+R A +TIQ+Y +G R
Sbjct: 753 AGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF 812
Query: 636 MRV--GYMRLQALIRSRLLSHRFRHLRGHIVGLQARARGYLTRRMYAQKM--WAIVKIQA 691
+R + +Q R ++ R++ +R + LQA RGYL R Y + + IQ
Sbjct: 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQK 872
Query: 692 HVRRMIAQRHYQKLQ---FEYQSQIEALKLKRKEERELKEAGNKRAKEIAEQHYR 743
HVR +A+ HY + Q + ++E ++LK + + + H
Sbjct: 873 HVRGWLARVHYHRTLKAIVYLQCCYR-RMMAKRELKKLKIE-ARSVERYKKLHIG 925
Score = 106 bits (267), Expect = 7e-24
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 581 YDTRERDRVLTRNILVLQKNIRGWVYRRRYKRLR--AATMTIQKYWKGWAQRRRYQRMRV 638
+ R++ + R + +Q+ +RG R LR A + IQK+ + + R+RYQ MR
Sbjct: 781 WLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRD 840
Query: 639 GYMRLQALIRSRLLSHRFRHLRGH--IVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRM 696
+ LQAL+R L+ ++++ + + +Q RG+L R Y + + AIV +Q RRM
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900
Query: 697 IAQRHYQKLQFEYQSQIEALKLKRKEERELKEAGNKRAKEIAE 739
+A+R +KL+ E +S KL E ++ + K ++ E
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Score = 88.6 bits (220), Expect = 3e-18
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 416 HFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQ 472
H+ QGGS +G DDA E + R A +L SD +F++LA +LH GN+ F
Sbjct: 286 HYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFAS 342
Score = 82.8 bits (205), Expect = 2e-16
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 21 AEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIG-MGSETRKRT 79
EQIK+ K K +L P +F + + + + G +++
Sbjct: 574 EEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHK 633
Query: 80 PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI--------LEANPILEAFGN 131
T+ QF+ SL LM+TL+ P ++RCIKPN+FK P L A +LE
Sbjct: 634 KTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLE---- 689
Query: 132 AKTIR 136
TIR
Sbjct: 690 --TIR 692
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 431 bits (1110), Expect = e-140
Identities = 132/378 (34%), Positives = 188/378 (49%), Gaps = 41/378 (10%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G +AVNPY+ LPIYT I Y+ K+ E+PPH+F++ DN Y +M ++Q
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSC- 172
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPM--- 117
L E G G K T +T KK ++ L+ + + KK
Sbjct: 173 ---LITGESGAG----K---TENT--KK----VIMYLAKVACAVKKKDEEASDKKEGSLE 216
Query: 118 -QILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQS 176
QI++ANP+LEA+GNAKT RN+NSSRFGK+I IHF G I GA IE YLLEKSR+ Q
Sbjct: 217 DQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQ 276
Query: 177 KDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMK 236
ERNYH+FY I + + + +T S G +T + DD EF A
Sbjct: 277 SAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFD 336
Query: 237 VLQFSDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLID 277
+L F+ E+ +FK A++LH G +K+K A + + L+
Sbjct: 337 ILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLK 396
Query: 278 ALTRKTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSA 337
AL + E V + Q V+ A K +Y R+F ++ ++N + +
Sbjct: 397 ALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYY- 455
Query: 338 MGVLDIFGFENFNTNSGE 355
+GVLDI GFE F+ NS E
Sbjct: 456 IGVLDIAGFEIFDFNSFE 473
Score = 191 bits (487), Expect = 3e-51
Identities = 54/122 (44%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIAIKQLNIM 528
FEQ CINY NE LQQFF H+F LEQEEY E I W+ I+F +D Q +DLI K + I+
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 529 ALIDEESKFPKGTDHTLLAKLHKTH-GLHRNYLKPKSDI-----NTSFGLNHFAGVVFYD 582
++++EE FPK D + KL++ H G +R + KP F L+H+AG V Y
Sbjct: 531 SILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYS 590
Query: 583 TR 584
Sbjct: 591 IT 592
Score = 155 bits (393), Expect = 2e-39
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 12/81 (14%)
Query: 353 SGESGAGKTESTKLILQYLAAISG------------KHSWIEQQILEANPILEAFGNAKT 400
+GESGAGKTE+TK ++ YLA ++ K +E QI++ANP+LEA+GNAKT
Sbjct: 175 TGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKT 234
Query: 401 IRNDNSSRFGKYIDIHFNSQG 421
RN+NSSRFGK+I IHF G
Sbjct: 235 TRNNNSSRFGKFIRIHFGPTG 255
Score = 85.8 bits (213), Expect = 2e-17
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 416 HFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQ 472
F +QG +T + DD EF A +L F+ E+ +FK A++LH G + F+Q
Sbjct: 310 SFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQ 365
Score = 82.4 bits (204), Expect = 3e-16
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 576 AGVVFYDTRERDRVLTRNILVLQKNIRGWVYRRRYKRLR---AATMTIQKYWKGWAQRRR 632
AGV+ RD L++ I + Q +IRG++ R+ YK+L+ IQ+ + W R
Sbjct: 764 AGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823
Query: 633 YQRMRVGYMRLQALI 647
+Q ++ Y +++ L+
Sbjct: 824 WQWWKL-YSKVKPLL 837
Score = 77.0 bits (190), Expect = 1e-14
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 57 QCIFLKDLFLDEIGMGSETRK------RTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKP 110
+ + +LF +K T+S ++SL+ LMK L + P F+RCI P
Sbjct: 614 KEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIP 673
Query: 111 NEFKKPMQI--------LEANPILEA 128
NE K+P + L+ N +LE
Sbjct: 674 NELKQPGLVDAELVLHQLQCNGVLEG 699
Score = 48.9 bits (117), Expect = 5e-06
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 647 IRSRLLSH----RFRHLRGHIVGLQARARGYLTRRMYA---QKMWAIVKIQAHVRRMIAQ 699
++ +L + R L I QA RGYL R+ Y + + IQ ++R+ +
Sbjct: 762 FKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL 821
Query: 700 RHYQKLQ 706
R++Q +
Sbjct: 822 RNWQWWK 828
Score = 36.9 bits (86), Expect = 0.023
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 631 RRYQRMRVGYMRLQALIRSRLLSHRFRHLRG---HIVGLQARARGYLTRRMYAQKMWAIV 687
R +R+ QA IR L+ ++ L+ + +Q R +L R + Q
Sbjct: 773 MRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW-QWWKLYS 831
Query: 688 KIQA 691
K++
Sbjct: 832 KVKP 835
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 426 bits (1097), Expect = e-138
Identities = 140/407 (34%), Positives = 205/407 (50%), Gaps = 81/407 (19%)
Query: 1 TYTGSILVAVNPYQILP-IYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCI 59
TY +IL+AVNPY +P IY++E IK Y+ K +G +PPH+FAI D + MK Q I
Sbjct: 84 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 143
Query: 60 FLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI 119
+ E G G K T +T K +++ L+ + +I
Sbjct: 144 ----IVSGESGAG----K---TENT--KF----VLRYLTESYG------TGQDIDD--RI 178
Query: 120 LEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDE 179
+EANP+LEAFGNAKT+RN+NSSRFGK+++IHFN + + G + YLLEKSRI Q K+E
Sbjct: 179 VEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEE 238
Query: 180 RNYHVFYCILAGLSKDEKMALELTDASQYRYLTGG------------------------- 214
RNYH+FY + AG S+D + L L+ +RYL G
Sbjct: 239 RNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLK 298
Query: 215 -GSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNIKYK--------- 264
GS+ DD +F + +AMK + DE+ D+F+++A VLH GNI ++
Sbjct: 299 AGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGC 358
Query: 265 -------------AAVIAVPKQPLIDALTRKTFF-----AQGETVISTLSREQSVDVRDA 306
A ++ + + L +LT + A+G + L EQ+ + RDA
Sbjct: 359 NLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDA 418
Query: 307 FVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNS 353
K +Y LF ++ +++N P + +GVLDI GFE F NS
Sbjct: 419 LAKTVYSHLFDHVVNRVNQCF--PFETSSYFIGVLDIAGFEYFEHNS 463
Score = 201 bits (514), Expect = 5e-55
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMA 529
FEQFCINY NE LQQFF + I K EQE Y E + + +VDNQD +DLI + + I+
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 530 LIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSD---------INTSFGLNHFAGVVF 580
++DEE++ P+ +D + +H+ H H P+ + F + HFAG V
Sbjct: 524 ILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVC 583
Query: 581 YDTR 584
Y+T
Sbjct: 584 YETT 587
Score = 168 bits (427), Expect = 1e-43
Identities = 44/69 (63%), Positives = 57/69 (82%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKY 412
SGESGAGKTE+TK +L+YL G I+ +I+EANP+LEAFGNAKT+RN+NSSRFGK+
Sbjct: 146 SGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKF 205
Query: 413 IDIHFNSQG 421
++IHFN +
Sbjct: 206 VEIHFNEKS 214
Score = 88.5 bits (220), Expect = 3e-18
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 57 QCIFLKDLFLDEIGMGSETRKRT-----PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPN 111
+ F+++LF +T+++ ++ +FK L+ L+ L + FIRCIKPN
Sbjct: 609 RDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPN 668
Query: 112 EFKKPMQI 119
Sbjct: 669 LKMTSHHF 676
Score = 81.5 bits (202), Expect = 4e-16
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 403 NDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAV 462
+ + + + GS+ DD +F + +AMK + DE+ D+F+++A V
Sbjct: 281 KETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGV 340
Query: 463 LHTGNINFEQ 472
LH GNI+FE+
Sbjct: 341 LHLGNIDFEE 350
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 396 bits (1020), Expect = e-123
Identities = 132/375 (35%), Positives = 199/375 (53%), Gaps = 31/375 (8%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G V +NPY+ LPIY+ + I +YK KK E+PPHI+AI D Y M + +DQ I
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSI- 172
Query: 61 LKDLFLDEIGMG-SETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI 119
L E G G +E K+ Q+ + K + E +K Q+
Sbjct: 173 ---LCTGESGAGKTENTKKV----IQYLAVVASSHKGKKDTSITQGPSFSYGELEK--QL 223
Query: 120 LEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDE 179
L+ANPILEAFGNAKT++NDNSSRFGK+I I+F+ G I GA IE YLLEKSR + Q+KDE
Sbjct: 224 LQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDE 283
Query: 180 RNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239
R +H+FY ++AG S+ + L L + Y +L+ G + + D F + AM ++
Sbjct: 284 RTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMG 342
Query: 240 FSDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLIDALT 280
F++E+ + +++++VL GNI +K ++ + ++
Sbjct: 343 FTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSIL 402
Query: 281 RKTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGV 340
+ V ++EQ+ +A K + RLF +I ++N A+ + K Q S +G+
Sbjct: 403 TPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGI 462
Query: 341 LDIFGFENFNTNSGE 355
LDI GFE F NS E
Sbjct: 463 LDIAGFEIFEINSFE 477
Score = 191 bits (486), Expect = 9e-51
Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLIA--IKQLN 526
FEQ CINY NE LQQ F +F LEQEEY E I W I+F +D Q ++LI
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 527 IMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPK-SDINTSFGLNHFAGVVFYDTR 584
++AL+DEE FPK TD + + KL + G H + K K T F + H+AG V Y+
Sbjct: 536 VLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNAS 594
Score = 128 bits (322), Expect = 2e-30
Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 16/85 (18%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHSW----------------IEQQILEANPILEAFG 396
+GESGAGKTE+TK ++QYLA ++ H +E+Q+L+ANPILEAFG
Sbjct: 175 TGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFG 234
Query: 397 NAKTIRNDNSSRFGKYIDIHFNSQG 421
NAKT++NDNSSRFGK+I I+F+ G
Sbjct: 235 NAKTVKNDNSSRFGKFIRINFDVTG 259
Score = 91.8 bits (228), Expect = 3e-19
Identities = 29/183 (15%), Positives = 69/183 (37%), Gaps = 19/183 (10%)
Query: 576 AGVVFYDTRERDRVLTRNILVLQKNIRGWVYRRRYKRLR---AATMTIQKYWKGWAQRRR 632
GV+ + ERD +T I+ Q RG++ R+ + + + + IQ + +
Sbjct: 777 TGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836
Query: 633 YQRMRVGYMRLQALIRSRL-------------LSHRFRHLRGHIVGLQARARGYLTRR-M 678
+ M + + L +R R + + L+ + + +
Sbjct: 837 WPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL 896
Query: 679 YAQKMWAIVKIQAHVRRMIAQRHYQKLQFEYQSQIEALKLKRKEER--ELKEAGNKRAKE 736
+K+ A ++ A M + +K + E +++ +EER +L+ K ++
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 737 IAE 739
+ +
Sbjct: 957 MLD 959
Score = 79.9 bits (197), Expect = 2e-15
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 31/114 (27%)
Query: 48 THMKRFGQDQCIFLKDLFLDEIGMGSET-----------------RKRTPTLSTQFKKSL 90
Q F+ DL+ D + + T+ +K+ L
Sbjct: 607 NVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQL 666
Query: 91 DCLMKTLSNCQPFFIRCIKPNEFKKPMQI--------LEANPILEAFGNAKTIR 136
LM TL N P F+RCI PN K+ ++ L N +LE IR
Sbjct: 667 TKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLE------GIR 714
Score = 78.3 bits (193), Expect = 5e-15
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 416 HFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQ 472
F S G + + D F + AM ++ F++E+ + +++++VL GNI F++
Sbjct: 313 TFLSNGH-VPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKK 368
Score = 65.2 bits (159), Expect = 6e-11
Identities = 21/142 (14%), Positives = 51/142 (35%), Gaps = 13/142 (9%)
Query: 607 RRRYKRLRAATMTIQKYWKGWAQRRRYQRMR---VGYMRLQALIRSRLLSHRFRH--LRG 661
R ++ + Q +G+ R+ + + + +Q +RS + + L
Sbjct: 785 EERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFF 844
Query: 662 HIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKLQFEYQSQIEA---LKL 718
I L R + +++ + R+ A+ ++L+ ++ E L+
Sbjct: 845 XIXPLLKVTRQEEEMQAKDEEL-----QRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899
Query: 719 KRKEERELKEAGNKRAKEIAEQ 740
K + E EL + +A +
Sbjct: 900 KLQAETELYAEAEEMRVRLAAK 921
Score = 56.0 bits (135), Expect = 4e-08
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 655 RFRHLRGHIVGLQARARGYLTRRMYAQKMW---AIVKIQAHVRRMIAQRHYQKLQ----- 706
R + I+ QA+ RGYL R+ +A++ +I IQ +VR + H+ +
Sbjct: 787 RDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXI 846
Query: 707 ---FEYQSQIEALKLKRKEERELKEAGNKRAKEIAEQHYRY 744
+ Q E ++ K +E + KE K E+ E ++
Sbjct: 847 XPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKH 887
Score = 53.3 bits (128), Expect = 3e-07
Identities = 24/194 (12%), Positives = 55/194 (28%), Gaps = 42/194 (21%)
Query: 588 RVLTRNILVLQKNIRGWVYRRRYKR--LRAATMTIQKYWKGWAQRRRYQRMRVGYMRLQA 645
+ +I +Q N+R ++ + L + K + + + Q
Sbjct: 815 QQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQ 874
Query: 646 LIRSRLLSHRFRHLRGHI--VGLQARARGYLTRRMYAQKMWAIVKIQ----------AHV 693
+ L +H + LQ + + A++M + +
Sbjct: 875 KAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA 934
Query: 694 RRMIAQRHYQKLQ----------FEYQSQIEALKLKRK------------------EERE 725
R + Q+LQ + + Q+E + R+ +
Sbjct: 935 RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI 994
Query: 726 LKEAGNKRAKEIAE 739
+++ NK KE
Sbjct: 995 MEDQNNKLTKERKL 1008
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ motif,
acetylation; 2.5A {Mus musculus}
Length = 58
Score = 68.0 bits (167), Expect = 9e-15
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 589 VLTRNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRMR 637
L + +QK IRGW+ R+RY ++ A +T+Q+Y +G+ R + +R
Sbjct: 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51
Score = 55.6 bits (135), Expect = 2e-10
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 612 RLRAATMTIQKYWKGWAQRRRYQRMRVGYMRLQALIRSRLLSHRFRHLR 660
+LRAA + IQK +GW R+RY M+ + +Q +R + LR
Sbjct: 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51
Score = 52.2 bits (126), Expect = 3e-09
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 659 LRGHIVGLQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKL 705
LR + +Q RG+L R+ Y A + +Q +VR A+ + + L
Sbjct: 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL 50
Score = 31.8 bits (73), Expect = 0.076
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 685 AIVKIQAHVRRMIAQRHYQKLQ 706
A ++IQ +R + ++ Y +Q
Sbjct: 7 ACIRIQKTIRGWLLRKRYLCMQ 28
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 2e-13
Identities = 75/610 (12%), Positives = 191/610 (31%), Gaps = 144/610 (23%)
Query: 133 KTIRNDNSSRFGKYID---IHFNSQGVIEGAKIEQYLLEKSRIVSQSKDERNYHVFYCIL 189
K I + F D + + ++ +I+ ++ K + +F+ +L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV------SGTLRLFWTLL 72
Query: 190 AGLSKDEKMALELTDASQYRYLTGGGSITCEGRD---DAAEFADIRSAMKVLQFSDEDIW 246
+ + + +E Y++L I E R + + R + ++D ++
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRL----YNDNQVF 126
Query: 247 DVFKLLAAVLHTGNIKYKAAVIAVPKQPLIDALTRKTFFAQGETVI----------STLS 296
KY V + L + + + + ++
Sbjct: 127 A--------------KYN-----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 297 RE--QSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFE---NFNT 351
+ S V+ I+ ++ + N + + +L ++ N+ +
Sbjct: 168 LDVCLSYKVQCKMDFKIF-----WLN-------LKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 352 NSGESGAGK--TESTKLILQ-YLAAISGKHSWIEQQILE--ANP-ILEAFG-NAKTI--- 401
S S K S + L+ L + ++ + +L N AF + K +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSCKILLTT 272
Query: 402 RNDNSSRF---GKYIDIHFNSQGGSIT-CEGRDDAAEFADI------RSAMKVLQFSDED 451
R + F I + ++T E + ++ D R +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---- 328
Query: 452 IWDVFKLLAAVLHTGNINFEQF--------------CINYANEN-LQQFFVQ-HIFKLEQ 495
++A + G ++ + +N ++ F + +F
Sbjct: 329 ---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P 382
Query: 496 EEYNVEA----INWQHIEFVDNQDALDLIAIKQLNIMALIDEESKFPKGTDHTLLAKLHK 551
++ + W + D ++ +L+ +L++++ K + ++ +L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVN-----KLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 552 T----HGLHR----NYLKPKSDINTSFGLNHFAGVVF----Y---DTRERDRV-LTRNIL 595
+ LHR +Y PK+ + + + + + +R+ L R +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 596 V----LQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQR--RRYQRMRVGYMRLQALIRS 649
+ L++ IR T+ K++K + +Y+R+ + I
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 650 RLLSHRFRHL 659
L+ ++ L
Sbjct: 558 NLICSKYTDL 567
Score = 48.7 bits (115), Expect = 7e-06
Identities = 74/581 (12%), Positives = 149/581 (25%), Gaps = 224/581 (38%)
Query: 227 EFADIRSAMKVLQFSDEDIWDVFK----------LLAAVLHTGNIKYKAAVIAVPKQP-- 274
+ D++ K + S E+I + L +L + V V +
Sbjct: 34 DCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 275 -LIDALTRKTFFAQGETVISTLSREQSVDVRDAFVKG--IYGRLFVYIT---HKINSAIY 328
L+ + + E ++ ++ RD ++ + V K+ A+
Sbjct: 93 FLMSPI-------KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 329 RPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWIEQQILEA 388
+ R A VL I G G+GKT ++A + +
Sbjct: 146 ----ELRPAKNVL-IDGV---------LGSGKT--------WVAL----------DVCLS 173
Query: 389 NPILEAFGNAKTIRNDNSSRFGKY-IDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQF 447
+ F + +++ ++ E + +++LQ
Sbjct: 174 YKVQCKMD------------FKIFWLNL------------KNCNSPE-----TVLEMLQ- 203
Query: 448 SDEDIWDVF--KLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFK-----LEQEEYNV 500
+ + H+ NI I+ L++ ++ L NV
Sbjct: 204 ---KLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKPYENCLLVLL----NV 253
Query: 501 EAINWQHIEFVDNQ-------------DALDLIAIKQLNIMALIDEESKFPKGTDHTLLA 547
+ N + + D L + +L +LL
Sbjct: 254 Q--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLL 308
Query: 548 KLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRVLTRNILVLQKNIRGWVYR 607
K + D VLT N L +I
Sbjct: 309 K--------------------------YLDCRPQDLPRE--VLTTNPRRL--SIIA---- 334
Query: 608 RRYKRLRAATMTIQKYWKGWAQRRRYQRMRVGYMRLQALIRSRLLSHRFRHLRGHIVGLQ 667
+ +R T WK V +L +I S L L+
Sbjct: 335 ---ESIRDGLATWD-NWK-----------HVNCDKLTTIIESSLNV------------LE 367
Query: 668 ARARGYLTRRMYAQKMWAI----VKIQAHV---------------------RRMIAQRHY 702
R+M+ ++ I + + + ++
Sbjct: 368 P----AEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 703 QKLQFEYQSQIEALKLKRKEERELKEAGNKRAKEIAEQHYR 743
++ S LK+K + E L ++ + HY
Sbjct: 422 KESTISIPSIYLELKVKLENEYAL----HRSIVD----HYN 454
Score = 36.4 bits (83), Expect = 0.045
Identities = 61/474 (12%), Positives = 129/474 (27%), Gaps = 151/474 (31%)
Query: 17 PIYTAEQIKLYKDKKIGELP-PHIFAIGDNGYT--HMKRFGQD-QCIFLKDLFLDEIGMG 72
I+ + + P + + N F + C K L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC---KILLT------ 271
Query: 73 SETRKRTPT----LSTQFKKSLDCLMKTLSNCQ--PFFIRCIKPNEFKKPMQILEANPIL 126
TR + T +T SLD TL+ + ++ + P ++L NP
Sbjct: 272 --TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 127 EA-FGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEK-SRIVSQS------KD 178
+ ++IR D + + + + +K + I+ S +
Sbjct: 330 LSIIA--ESIR-DGLATWDNW----------------KHVNCDKLTTIIESSLNVLEPAE 370
Query: 179 ERNYHVFYCILAGLSKDEK---MALEL--TDASQYRYLTGGGSITCEGRDDAAEFADIRS 233
R + L+ + L L D + + + S
Sbjct: 371 YRKM---FDRLSVFPPSAHIPTILLSLIWFDVIKS-----------DVMVVVNKLHK-YS 415
Query: 234 AMKVLQFSDEDIWDVFKLLAAVLHTGNIKYKAAVIAVPKQPLIDALTRKTFFAQGETVIS 293
+ ++ K + + ++ K K AL R ++
Sbjct: 416 LV------EKQ----PKESTISIPSIYLELKV------KLENEYALHRS--------IVD 451
Query: 294 TLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNS 353
+ ++ D D + + +I H + + F
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-----EHPER---------MTLF---- 493
Query: 354 GESGAGKTESTKLILQYLAAISGKHSWIEQQI-------LEANPILEAFGNAKTIRN--- 403
+ L + ++EQ+I + IL K +
Sbjct: 494 ----------RMVFLDF--------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 404 DNSSRFGKYID--IHFNSQGGSITCEGRDDAAEFADI-RSAMKVLQFSDEDIWD 454
DN ++ + ++ + F E +++ D+ R A L DE I++
Sbjct: 536 DNDPKYERLVNAILDF-----LPKIEENLICSKYTDLLRIA---LMAEDEAIFE 581
Score = 34.8 bits (79), Expect = 0.14
Identities = 35/262 (13%), Positives = 75/262 (28%), Gaps = 76/262 (29%)
Query: 464 HTGNINFEQFCINYANENLQQFF-------------------------VQHIFKLEQEEY 498
H +++FE Y +++ F + HI +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 499 NVEAINW--------QHIEFVDNQDALDLIAIKQLN---IMALIDEESKFPKGTDHTLLA 547
+ W +FV+ + L ++N +M+ I E + P +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVE--EVL------RINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 548 KLHKTHG-------LHRNYLKPKSDINTS-FGLNHFAGVVFY------DTRERDRVLT-- 591
+ + + + + L+P + + L V+ T +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-----WVALD 169
Query: 592 --RNILVLQKNIRG--WVYRRRYKRLRAATMTIQKYW----KGWAQR-RRYQRMRVGYMR 642
+ V K W+ + +QK W R +++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 643 LQALIRSRLLSHRFRHLRGHIV 664
+QA +R RLL + + +V
Sbjct: 230 IQAELR-RLLKSK-PYENCLLV 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 4e-07
Identities = 57/366 (15%), Positives = 98/366 (26%), Gaps = 148/366 (40%)
Query: 68 EIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQILEANPILE 127
E GMG + K + + ++ + T F I + I+ NP
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYG----FSI-----------LDIVINNP--- 1669
Query: 128 AFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKI-EQYLLEKSRIVSQSKDERNYH--V 184
+ IHF + G +I E Y + I D + +
Sbjct: 1670 -----------------VNLTIHFGGEK---GKRIRENYS---AMIFETIVDGKLKTEKI 1706
Query: 185 FYCILAGLSK----DEKMALELTDASQ----------YRYLTGGGSITCEGRDDAA---- 226
F I + EK L T +Q + L G I DA
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP----ADATFAGH 1762
Query: 227 ---EFADIRSAM----KVLQFSDEDIWDVFKLLAAVLHT-GNIKYKAAVIAVPKQPLIDA 278
E+ +A+ V+ L V+ G +AVP+ D
Sbjct: 1763 SLGEY----AALASLADVMSIES---------LVEVVFYRG----MTMQVAVPR----DE 1801
Query: 279 LTRKTF--FA-QGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQAR 335
L R + A V ++ S+E V+ + +
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEAL----QYVVERV----------------------GK 1835
Query: 336 SAMGVLDIFGFENFNTNSGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAF 395
+++I N+N + QY +G ++ +L
Sbjct: 1836 RTGWLVEI---VNYNV-ENQ-------------QY--VAAGDLRALD----TVTNVLNFI 1872
Query: 396 GNAKTI 401
+ I
Sbjct: 1873 K-LQKI 1877
Score = 50.4 bits (120), Expect = 2e-06
Identities = 59/352 (16%), Positives = 96/352 (27%), Gaps = 143/352 (40%)
Query: 221 GRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNIKYKAAVIAVPKQ-PLIDAL 279
G D + D+W+ A H + Y +++ + P
Sbjct: 1632 GMDLYKTSKAAQ-----------DVWN-----RADNHFKD-TYGFSILDIVINNP----- 1669
Query: 280 TRKT--FFAQGETVI----STLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYR-PKN 332
T F + I S + E VD + K +F I S +R K
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK-----IFKEINEHSTSYTFRSEK- 1723
Query: 333 QARSAMGVLDIFGFENFNTNSGESGAGKTEST--------KLILQYL---------AAIS 375
G+L T+ T K + L A +
Sbjct: 1724 ------GLLS-----------------ATQFTQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 376 GKHSWIEQQIL-E--ANPILEAFGNA-------KTIRNDNSSRFGKYIDIHFNSQGGSIT 425
G HS L E A L + + + + R G +
Sbjct: 1761 G-HS------LGEYAA---LASLADVMSIESLVEVVF----YR-GMTM--QVAVPRDE-- 1801
Query: 426 CEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFC-INYANENLQQ 484
GR + A + FS E + V + + TG I N
Sbjct: 1802 -LGRSNYGMIAINPGRV-AASFSQEALQYVVERVGK--RTG-----WLVEI--VN----- 1845
Query: 485 FFVQHIFKLEQEEYNVEAINWQ-----HIEFVDN-QDALDLIAIKQLNIMAL 530
YNVE N Q + +D + L+ I +++++I+ L
Sbjct: 1846 -------------YNVE--NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 41.6 bits (97), Expect = 0.001
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 25/135 (18%)
Query: 462 VLHTGNINF------EQFCINYANENLQQFFVQHI------FKLEQEEYNVEAINWQHIE 509
L G++ F A++ LQ+ F + + F + E + + +
Sbjct: 10 TLSHGSLEHVLLVPTASFF--IASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 510 FVDNQ-DALDLIAIKQLNIMALIDEESKFPKGTD-HTLLAKLH--------KTHGLHRNY 559
+V + + + Q+ + L + E+ + +G D H L AKL KT L +NY
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 560 LKPKSDINTSFGLNH 574
+ + F
Sbjct: 127 ITARIMAKRPFDKKS 141
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 43.2 bits (102), Expect = 8e-06
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 586 RDRVLTRNILVLQKNIRGWVYRRRYKRL---RAATMTIQKYWKGWAQRRRYQRMRVGYMR 642
RD L++ I + Q +IRG++ R+ YK+L R IQ+ + W R +Q ++ Y +
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKL-YSK 59
Query: 643 LQALI 647
++ L+
Sbjct: 60 VKPLL 64
Score = 38.6 bits (90), Expect = 4e-04
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 655 RFRHLRGHIVGLQARARGYLTRRMYAQKMW---AIVKIQAHVRRMIAQRH 701
R L I QA RGYL R+ Y + + IQ ++R+ + R+
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 40.8 bits (96), Expect = 5e-05
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 657 RHLRGHIVGLQARARGYLTRRMYAQKM---WAIVKIQAHVRRMIAQRHYQ 703
R + + +QA ARG++ R+ + Q + IQ ++R + +++
Sbjct: 1 RRIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50
Score = 38.5 bits (90), Expect = 3e-04
Identities = 10/61 (16%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 590 LTRNILVLQKNIRGWVYRRRYKRL---RAATMTIQKYWKGWAQRRRYQRMRVGYMRLQAL 646
+ + V+Q RGWV R+ +++ + IQ + + + + + ++ + + + L
Sbjct: 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWKL-FAKARPL 61
Query: 647 I 647
+
Sbjct: 62 L 62
Score = 25.8 bits (57), Expect = 9.0
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 686 IVKIQAHVRRMIAQRHYQKLQFEYQS 711
+ +QA R + ++H+++ + + S
Sbjct: 7 VKVVQAAARGWVERKHFRQAREKSVS 32
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix
bundle, actin-binding, ATP-binding, calmodulin-binding,
coiled coil; 2.70A {Sus scrofa}
Length = 148
Score = 35.4 bits (81), Expect = 0.021
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 17/73 (23%)
Query: 593 NILVLQKNIRGWVYRRRYKRL-----------------RAATMTIQKYWKGWAQRRRYQR 635
++ L K + W+ R+K++ A + +QK + W +RR++
Sbjct: 7 HLAELVKRVNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEACIKMQKTIRMWLCKRRHKP 66
Query: 636 MRVGYMRLQALIR 648
G +++ L +
Sbjct: 67 RIDGLVKVGTLKK 79
Score = 27.3 bits (60), Expect = 9.9
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 592 RNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKG 626
+ +QK IR W+ +RR+K + + K
Sbjct: 46 EACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKR 80
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 35.1 bits (80), Expect = 0.062
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 432 AAE-FADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHI 490
A E F +I A+++ +E ++ + + G + C + + + ++VQ
Sbjct: 167 AYEPFENI--AIELP--PNEILFSENNDMDN-NNDGVDELNKKC-TFWDAISKLYYVQFF 220
Query: 491 FKLEQEE 497
FK ++E
Sbjct: 221 FKQAEQE 227
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.42
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 703 QKLQFEYQSQIEAL-KLKRKEERELKEAGNKRAKEIAEQHYRY 744
+K + E + +++ L + E+E +E K K++ E + R
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWRE---KAKKDLEEWNQRQ 127
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 31.5 bits (71), Expect = 1.0
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 7/118 (5%)
Query: 340 VLDIFGFENFNTNS-----GESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEA 394
++DI+ TNS + GAGK+ + K++L + I+ + E +
Sbjct: 23 LVDIWKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE-REYKEMCRK 81
Query: 395 FGNAKTIRNDNSSRFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDI 452
G I + + + I++ D+
Sbjct: 82 LG-GVWINCTGGEGKINPLQVRLRPVEEEDEENAVFQSPLALHIQTLRTFFSLYLRDL 138
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 30.8 bits (69), Expect = 1.2
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 28/143 (19%)
Query: 554 GLHRNYLKPKSDINTSFGLNHFAGVVFYDTRERDRVLTRNILVLQKNIRGWV---YRRRY 610
G R +L P N + + ++R R L ++ LV++++ R
Sbjct: 18 GQKRLWLDP----------NESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFL 67
Query: 611 KRLRAATMTIQKYWKG-----------WAQRRRYQRMRVGYMRLQALIRSRLLSHRFRHL 659
+ R T KG W +R+R R + R ++ H++
Sbjct: 68 EAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYR----AAKKIDKHQYHEF 123
Query: 660 RGHIVGLQARARGYLTRRMYAQK 682
G + + L ++ K
Sbjct: 124 YLGSKGNLYKNKTVLIEAIHVSK 146
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 30.0 bits (67), Expect = 1.5
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 609 RYKRLRAATMTIQKYWKGWAQRRRYQRMRVGYMRLQA 645
R K + M IQ+ ++ +R + + +
Sbjct: 125 RRKHEEVSAMVIQRAFRRHLLQRSLKHASFLFRQQAG 161
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 29.6 bits (67), Expect = 3.6
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 64 LFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFI 105
L + M + + R LS ++ L K + FFI
Sbjct: 213 FLLADEAMPTMEKGRGNFLSAATDLAIQFLSK---DNSAFFI 251
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 28.2 bits (63), Expect = 6.6
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 431 DAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFC 474
+A EF + + L S + + F + G ++ ++
Sbjct: 120 NADEF---AAWLTALGMSKAEAAEAFNQVDTN-GNGELSLDELL 159
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Length = 80
Score = 26.8 bits (59), Expect = 7.4
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 73 SETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPN--EFKKPMQ 118
SE + + Q +K ++ ++ + F +C KP+ E+ K ++
Sbjct: 5 SEKGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVK 52
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 28.1 bits (62), Expect = 7.5
Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 36/179 (20%)
Query: 573 NHFAGVVFYDTRERDRVLTRNILVLQKNIRG---WVYRRRYKRLRAATMTIQKYWKG--- 626
N + + ++R R L ++ LV++++ R + R T KG
Sbjct: 27 NESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRN 86
Query: 627 --------WAQRRRYQRMRVGYMRLQALIRSRLLSHRFRHLRGHIVGLQARARGYLTRRM 678
W +R+R R + R ++ H++ L ++ Y +
Sbjct: 87 ARMPTKVLWMRRQRVLRRLLRKYR----AAKKIDKHQYHEFY-----LGSKGNLYKNKT- 136
Query: 679 YAQKMWAIVKIQAHVRRMIAQRHYQKLQFEYQSQIEALKLKRKEERELKEAGNKRAKEI 737
+ + A + Q EA + K R + + ++
Sbjct: 137 ---------VLIEAIHVSKADKIKSDKLTS---QQEARRAKNTASRAKRNEKAQIVAKV 183
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 27.9 bits (63), Expect = 8.2
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 435 FADIRSAMKVL--QFSDEDIWDVFKLLAAVLHTGNINFEQFC 474
++ ++ + FS E+I +V+K A L N+ +
Sbjct: 104 EDYLKDLLENMGDNFSKEEIKNVWK--DAPLKNKQFNYNKMV 143
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 28.5 bits (64), Expect = 9.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 674 LTRRMYAQKMWAIVK------IQAHVRRMIAQRHY 702
L RR + KMW + + +QA++R+ + H
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHE 387
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.401
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,703,217
Number of extensions: 735950
Number of successful extensions: 2211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2082
Number of HSP's successfully gapped: 121
Length of query: 750
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 649
Effective length of database: 3,881,772
Effective search space: 2519270028
Effective search space used: 2519270028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.8 bits)