RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14295
(750 letters)
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 294 bits (753), Expect = 2e-89
Identities = 151/375 (40%), Positives = 208/375 (55%), Gaps = 42/375 (11%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G LVAVNP++ +PIYT E + ++K ++ E+ PHIFAI D Y M Q+Q +
Sbjct: 70 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSL- 128
Query: 61 LKDLFLDEIGMG-SETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI 119
L E G G +E K+ +++ L++ R QI
Sbjct: 129 ---LITGESGAGKTENTKK--------------VIQYLASVAG---RNQANGSGVLEQQI 168
Query: 120 LEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDE 179
L+ANPILEAFGNAKT RN+NSSRFGK+I+I FN+ G I GA I+ YLLEKSR+V QS+ E
Sbjct: 169 LQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETE 228
Query: 180 RNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239
RNYH+FY +LAG + +EK AL L + YL G + +G D+ EF R AM ++
Sbjct: 229 RNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 288
Query: 240 FSDEDIWDVFKLLAAVLHTGNIKYK------------------AAVIAVPKQPLIDALTR 281
FS E+ +FK++A +LH GNIK++ + V V L AL
Sbjct: 289 FSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALME 348
Query: 282 KTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVL 341
A + V L+ E+S RDA VK +YGRLF+++ KIN+ + + + +GVL
Sbjct: 349 PRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERKA--YFIGVL 406
Query: 342 DIFGFENFNTNSGES 356
DI GFE F NS E
Sbjct: 407 DISGFEIFKVNSFEQ 421
Score = 105 bits (262), Expect = 6e-24
Identities = 48/74 (64%), Positives = 63/74 (85%), Gaps = 5/74 (6%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKH-----SWIEQQILEANPILEAFGNAKTIRNDNSS 407
+GESGAGKTE+TK ++QYLA+++G++ +EQQIL+ANPILEAFGNAKT RN+NSS
Sbjct: 131 TGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSS 190
Query: 408 RFGKYIDIHFNSQG 421
RFGK+I+I FN+ G
Sbjct: 191 RFGKFIEIQFNNAG 204
Score = 102 bits (255), Expect = 4e-23
Identities = 57/121 (47%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 467 NINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF-VDNQDALDLI-AIKQ 524
+FEQ CINY NE LQQFF H+FKLEQEEY E INW I+F +D+Q +DLI +
Sbjct: 416 VNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQP 475
Query: 525 LNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTR 584
I+AL+DE+S FP TD+TL+ KLH + T FG+ H+AG V Y+ +
Sbjct: 476 PGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQ 535
Query: 585 E 585
+
Sbjct: 536 D 536
Score = 80.1 bits (197), Expect = 5e-16
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 53 FGQDQCIFLKDLFLD-EIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPN 111
F + LF D I ++ T++ Q+K+ L LM TL P F+RCI PN
Sbjct: 553 FKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPN 612
Query: 112 EFKKPMQI--------LEANPILEA 128
+ P ++ L N +LE
Sbjct: 613 NKQLPAKLEDKVVLDQLRCNGVLEG 637
Score = 66.6 bits (162), Expect = 5e-12
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 414 DIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQ 472
++ +Q G + +G D+ EF R AM ++ FS E+ +FK++A +LH GNI FE+
Sbjct: 256 SFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 314
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 292 bits (747), Expect = 1e-88
Identities = 131/375 (34%), Positives = 194/375 (51%), Gaps = 45/375 (12%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY G +LVA+NPY+ LPIY + I Y + +G++ PHIFA+ + Y M R ++Q I
Sbjct: 39 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSI- 97
Query: 61 LKDLFLDEIGMG-SETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI 119
+ E G G + + K M+ + +E ++
Sbjct: 98 ---IVSGESGAGKTVSAKY--------------AMRYFATV------SGSASEANVEEKV 134
Query: 120 LEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDE 179
L +NPI+E+ GNAKT RNDNSSRFGKYI+I F+ + I GA + YLLEKSR+V Q+++E
Sbjct: 135 LASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEE 194
Query: 180 RNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239
RNYH+FY + A + E L L +A+ + Y GGS +G DDA E + R A +L
Sbjct: 195 RNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLG 254
Query: 240 FSDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLIDALT 280
SD +F++LA +LH GN+++ ++ V + + L
Sbjct: 255 ISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLC 314
Query: 281 RKTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGV 340
+ ET I +S+ +++ RDA K IY LF +I +N A+ + S +GV
Sbjct: 315 HRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKAL-HSTVKQHSFIGV 373
Query: 341 LDIFGFENFNTNSGE 355
LDI+GFE F NS E
Sbjct: 374 LDIYGFETFEINSFE 388
Score = 109 bits (272), Expect = 3e-25
Identities = 68/196 (34%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 469 NFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIM 528
+FEQFCINYANE LQQ F H+FKLEQEEY E I W I+F DNQ ++LI K ++
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKM-GVL 444
Query: 529 ALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPKSDINTSFGLNHFAGVVFYDTRE--- 585
L+DEE K PKG+D T KL+ TH + N +F + HFA V Y
Sbjct: 445 DLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLE 504
Query: 586 --RDRVLTRNILVLQKNIRGWVYRRRYKRLRAATMTIQKYWKGWAQRRRYQRMRVGYMRL 643
+D V I VL+ + + + ++ A G R
Sbjct: 505 KNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPG 564
Query: 644 Q-ALIRSRLLSHRFRH 658
Q + + + H+FR+
Sbjct: 565 QTSKEHKKTVGHQFRN 580
Score = 106 bits (265), Expect = 2e-24
Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHS--WIEQQILEANPILEAFGNAKTIRNDNSSRFG 410
SGESGAGKT S K ++Y A +SG S +E+++L +NPI+E+ GNAKT RNDNSSRFG
Sbjct: 100 SGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFG 159
Query: 411 KYIDIHFNSQGGSITC 426
KYI+I F+ + I
Sbjct: 160 KYIEIGFDKRYRIIGA 175
Score = 69.0 bits (168), Expect = 1e-12
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 19 YTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIFLKDLFLDEIGM-GSETRK 77
EQIK+ K K +L P +F + + + + G +++
Sbjct: 510 VYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKE 569
Query: 78 RTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI--------LEANPILEA 128
T+ QF+ SL LM+TL+ P ++RCIKPN+FK P L A +LE
Sbjct: 570 HKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLET 628
Score = 63.6 bits (154), Expect = 5e-11
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 408 RFGKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGN 467
R G H+ QGGS +G DDA E + R A +L SD +F++LA +LH GN
Sbjct: 216 RLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGN 275
Query: 468 INFEQ 472
+ F
Sbjct: 276 VEFAS 280
Score = 44.0 bits (103), Expect = 6e-05
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 576 AGVVFYDTRERDRVLTRNILVLQKNIRGWVYRRRYKRLR 614
AG V Y + R L + +QK IRGW+ R++Y R+R
Sbjct: 691 AGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR 729
Score = 43.6 bits (102), Expect = 8e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 607 RRRYKRLRAATMTIQKYWKGWAQRRRYQRMR 637
+ R +LRAA + IQK +GW R++Y RMR
Sbjct: 699 KIRADKLRAACIRIQKTIRGWLMRKKYMRMR 729
Score = 37.8 bits (87), Expect = 0.004
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 666 LQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKLQ 706
+A YL + + A ++IQ +R + ++ Y +++
Sbjct: 689 FRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR 729
Score = 32.4 bits (73), Expect = 0.22
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 643 LQALIRSRLLSHRFRHLRGHIVGLQARARGYLTRRMYAQK 682
+A + L R LR + +Q RG+L R+ Y +
Sbjct: 689 FRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRM 728
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 289 bits (740), Expect = 5e-88
Identities = 126/384 (32%), Positives = 197/384 (51%), Gaps = 52/384 (13%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY G ++++ NP++ L IY IK Y + E+PPH++A+ ++ Y M++ ++QC+
Sbjct: 31 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCV- 89
Query: 61 LKDLFLDEIGMG-SETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI 119
+ E G G +E K+ +M+ L+ PN + +
Sbjct: 90 ---IISGESGAGKTEASKK--------------IMQFLTFVSSN----QSPNGERISKML 128
Query: 120 LEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDE 179
L++NP+LEAFGNAKT+RNDNSSRFGKY+++ FN+ G G KI YLLEKSR+V +++ E
Sbjct: 129 LDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGE 188
Query: 180 RNYHVFYCILAGLSKDEK-MALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVL 238
R++H+FY +L GLS+ + +A Y YL G DD+ EF I AM+ L
Sbjct: 189 RSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETL 248
Query: 239 QFSDEDIWDVFKLLAAVLHTGNIKYK-----------------------AAVIAVPKQPL 275
+ D ++++LAA+LH GNI + A+ + +Q L
Sbjct: 249 GLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSL 308
Query: 276 IDALTRKTFF----AQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPK 331
AL ++ + + + Q+ RDA K +Y RLF ++ KIN+ I
Sbjct: 309 SIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTII-NCT 367
Query: 332 NQARSAMGVLDIFGFENFNTNSGE 355
+ +G+LDI+GFE F NS E
Sbjct: 368 TEKGPVIGILDIYGFEVFQNNSFE 391
Score = 110 bits (276), Expect = 1e-25
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 469 NFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIM 528
+FEQ IN+ NE LQQ F++ K EQEEY E I W++IE+ +N+ +LI K + ++
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 529 ALIDEESKFPKGTDHTLLAKLHKTHGLHRNY-----LKPKSDINTSFGLNHFAGVVFYDT 583
+L+DE K TD T L + K + + K +S +T F L H+AG V YD
Sbjct: 449 SLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDV 508
Query: 584 RE-----RDRVLTRNILVLQK 599
R +D + I +Q
Sbjct: 509 RGFLDKNKDTLFGDLISSMQS 529
Score = 104 bits (259), Expect = 1e-23
Identities = 43/73 (58%), Positives = 58/73 (79%), Gaps = 4/73 (5%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHS----WIEQQILEANPILEAFGNAKTIRNDNSSR 408
SGESGAGKTE++K I+Q+L +S S I + +L++NP+LEAFGNAKT+RNDNSSR
Sbjct: 92 SGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSR 151
Query: 409 FGKYIDIHFNSQG 421
FGKY+++ FN+ G
Sbjct: 152 FGKYMEMQFNAVG 164
Score = 82.8 bits (204), Expect = 5e-17
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 53 FGQDQCIFLKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNE 112
++ LF +++KR T +QF+ +++ L+ TL C P ++RCIK N+
Sbjct: 527 MQSSSDPLVQGLFPP--TRPEDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSND 584
Query: 113 FKKPMQI--------LEANPILEA 128
K+ I + +LE
Sbjct: 585 NKQAGVIDEDRVRHQVRYLGLLEN 608
Score = 68.2 bits (166), Expect = 2e-12
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 11/169 (6%)
Query: 314 RLFVYITHKINSAIYRPKNQARSAMGVLDIFGFENFNTNSGESGAGKTESTKL------- 366
+ +++ + R + +L+ FG N S GK +
Sbjct: 108 QFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPI 167
Query: 367 ---ILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGGS 423
I YL S + + + + + D + + G
Sbjct: 168 GGKITNYLLEKSRVVGRTQGERSF-HIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGC 226
Query: 424 ITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQ 472
DD+ EF I AM+ L + D ++++LAA+LH GNI F +
Sbjct: 227 FDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAE 275
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 288 bits (739), Expect = 1e-87
Identities = 130/380 (34%), Positives = 198/380 (52%), Gaps = 39/380 (10%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G V +NPY+ LPIY+ + I +YK KK E+PPHI+AI D Y M + +DQ I
Sbjct: 36 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSI- 94
Query: 61 LKDLFLDEIGMG-SETRKRT----PTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKK 115
L E G G +E K+ +++ K D + + +
Sbjct: 95 ---LCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEK-------- 143
Query: 116 PMQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQ 175
Q+L+ANPILEAFGNAKT++NDNSSRFGK+I I+F+ G I GA IE YLLEKSR + Q
Sbjct: 144 --QLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQ 201
Query: 176 SKDERNYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAM 235
+KDER +H+FY ++AG S+ + L L + Y +L G + + D F + AM
Sbjct: 202 AKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFL-SNGHVPIPAQQDDEMFQETLEAM 260
Query: 236 KVLQFSDEDIWDVFKLLAAVLHTGNIKYKA-------------------AVIAVPKQPLI 276
++ F++E+ + +++++VL GNI +K ++ +
Sbjct: 261 TIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFT 320
Query: 277 DALTRKTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARS 336
++ + V ++EQ+ +A K + RLF +I ++N A+ + K Q S
Sbjct: 321 RSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGAS 380
Query: 337 AMGVLDIFGFENFNTNSGES 356
+G+LDI GFE F NS E
Sbjct: 381 FLGILDIAGFEIFEINSFEQ 400
Score = 105 bits (262), Expect = 6e-24
Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 451 DIWDVFKLLAAVLHTGNINFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEF 510
I D+ +FEQ CINY NE LQQ F +F LEQEEY E I W I+F
Sbjct: 383 GILDIA----GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDF 438
Query: 511 -VDNQDALDLI--AIKQLNIMALIDEESKFPKGTDHTLLAKLHKTHGLHRNYLKPK-SDI 566
+D Q ++LI ++AL+DEE FPK TD + + KL + G H + K K
Sbjct: 439 GLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKD 498
Query: 567 NTSFGLNHFAGVVFYDTRE 585
T F + H+AG V Y+
Sbjct: 499 KTEFCILHYAGKVTYNASA 517
Score = 104 bits (259), Expect = 1e-23
Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 16/85 (18%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKH----------------SWIEQQILEANPILEAFG 396
+GESGAGKTE+TK ++QYLA ++ H +E+Q+L+ANPILEAFG
Sbjct: 97 TGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFG 156
Query: 397 NAKTIRNDNSSRFGKYIDIHFNSQG 421
NAKT++NDNSSRFGK+I I+F+ G
Sbjct: 157 NAKTVKNDNSSRFGKFIRINFDVTG 181
Score = 74.8 bits (183), Expect = 2e-14
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 25/101 (24%)
Query: 53 FGQDQCIFLKDLFLDEI-----------------GMGSETRKRTPTLSTQFKKSLDCLMK 95
Q F+ DL+ D + T+ +K+ L LM
Sbjct: 534 LNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMT 593
Query: 96 TLSNCQPFFIRCIKPNEFKKPMQI--------LEANPILEA 128
TL N P F+RCI PN K+ ++ L N +LE
Sbjct: 594 TLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEG 634
Score = 62.1 bits (150), Expect = 2e-10
Identities = 15/78 (19%), Positives = 33/78 (42%)
Query: 416 HFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCI 475
+ G + + D F + AM ++ F++E+ + +++++VL GNI F++
Sbjct: 234 YTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERN 293
Query: 476 NYANENLQQFFVQHIFKL 493
Q + L
Sbjct: 294 TDQASMPDNTAAQKVCHL 311
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 290 bits (744), Expect = 1e-87
Identities = 132/375 (35%), Positives = 185/375 (49%), Gaps = 33/375 (8%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G +AVNPY+ LPIYT I Y+ K+ E+PPH+F++ DN Y +M ++Q
Sbjct: 66 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSC- 124
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQIL 120
L E G G T +T KK + L K + E QI+
Sbjct: 125 ---LITGESGAGK-------TENT--KKVIMYLAKVACAVKKKDEEASDKKEGSLEDQII 172
Query: 121 EANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDER 180
+ANP+LEA+GNAKT RN+NSSRFGK+I IHF G I GA IE YLLEKSR+ Q ER
Sbjct: 173 QANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAER 232
Query: 181 NYHVFYCILAGLSKDEKMALELTDASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQF 240
NYH+FY I + + + +T S G +T + DD EF A +L F
Sbjct: 233 NYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGF 292
Query: 241 SDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLIDALTR 281
+ E+ +FK A++LH G +K+K A + + L+ AL +
Sbjct: 293 TKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLK 352
Query: 282 KTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGVL 341
E V + Q V+ A K +Y R+F ++ ++N + K + +GVL
Sbjct: 353 PKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTL-DTKAKRNYYIGVL 411
Query: 342 DIFGFENFNTNSGES 356
DI GFE F+ NS E
Sbjct: 412 DIAGFEIFDFNSFEQ 426
Score = 105 bits (263), Expect = 5e-24
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 469 NFEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIM 528
+FEQ CINY NE LQQFF H+F LEQEEY E I W+ I+F + + K + I+
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482
Query: 529 ALIDEESKFPKGTDHTLLAKLHKTH-GLHRNYLKPKSDI-----NTSFGLNHFAGVVFYD 582
++++EE FPK D + KL++ H G +R + KP F L+H+AG V Y
Sbjct: 483 SILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYS 542
Query: 583 TR 584
Sbjct: 543 IT 544
Score = 103 bits (258), Expect = 2e-23
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 12/81 (14%)
Query: 353 SGESGAGKTESTKLILQYLAAISG------------KHSWIEQQILEANPILEAFGNAKT 400
+GESGAGKTE+TK ++ YLA ++ K +E QI++ANP+LEA+GNAKT
Sbjct: 127 TGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKT 186
Query: 401 IRNDNSSRFGKYIDIHFNSQG 421
RN+NSSRFGK+I IHF G
Sbjct: 187 TRNNNSSRFGKFIRIHFGPTG 207
Score = 72.4 bits (177), Expect = 1e-13
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 576 AGVVFYDTRERDRVLTRNILVLQKNIRGWVYRRRYKRLR---AATMTIQKYWKGWAQRRR 632
AGV+ RD L++ I + Q +IRG++ R+ YK+L+ IQ+ + W R
Sbjct: 716 AGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 775
Query: 633 YQRMRVGYMRLQALI 647
+Q ++ Y +++ L+
Sbjct: 776 WQWWKL-YSKVKPLL 789
Score = 64.0 bits (155), Expect = 4e-11
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 53 FGQDQCIFLKDLFLDEIGMGSETRKRTP------TLSTQFKKSLDCLMKTLSNCQPFFIR 106
G + + +LF +K+ T+S ++SL+ LMK L + P F+R
Sbjct: 562 LGASKEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVR 621
Query: 107 CIKPNEFKKPMQILEANPI--LEAFGNAKTIR 136
CI PNE K+P + + L+ G + IR
Sbjct: 622 CIIPNELKQPGLVDAELVLHQLQCNGVLEGIR 653
Score = 58.6 bits (141), Expect = 2e-09
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 420 QGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQ 472
G +T + DD EF A +L F+ E+ +FK A++LH G + F+Q
Sbjct: 265 NQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQ 317
Score = 35.8 bits (82), Expect = 0.023
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 666 LQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKLQFEYQSQIEALKLKR 720
+A G L + I QAH+R + ++ Y+KLQ +I ++R
Sbjct: 714 FKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQ---DQRIGLSVIQR 765
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 277 bits (709), Expect = 1e-82
Identities = 130/375 (34%), Positives = 189/375 (50%), Gaps = 35/375 (9%)
Query: 1 TYTGSILVAVNPYQILPIYTAEQIKLYKDKKIGELPPHIFAIGDNGYTHMKRFGQDQCIF 60
TY+G V VNPY+ LP+Y + + Y+ KK E PPHIF+I DN Y M ++Q I
Sbjct: 68 TYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSI- 126
Query: 61 LKDLFLDEIGMGSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQIL 120
L E G G T++T K+ + ++ + + QI+
Sbjct: 127 ---LITGESGAGK-------TVNT--KRVIQYFATIAASGEKKKEEQSGKMQGTLEDQII 174
Query: 121 EANPILEAFGNAKTIRNDNSSRFGKYIDIHFNSQGVIEGAKIEQYLLEKSRIVSQSKDER 180
ANP+LEAFGNAKT+RNDNSSRFGK+I IHF + G + A IE YLLEKSR+ Q ER
Sbjct: 175 SANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAER 234
Query: 181 NYHVFYCILAGLSKDEKMALELT-DASQYRYLTGGGSITCEGRDDAAEFADIRSAMKVLQ 239
+YH+FY I++ + L +T + Y Y+ G IT DD E SA+ +L
Sbjct: 235 SYHIFYQIMSNKKPELIDMLLITTNPYDYHYV-SEGEITVPSIDDQEELMATDSAIDILG 293
Query: 240 FSDEDIWDVFKLLAAVLHTGNIKYK-------------------AAVIAVPKQPLIDALT 280
FS ++ ++KL AV+H GN+K+K A ++ + L+ AL
Sbjct: 294 FSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLMGLNSAELLKALC 353
Query: 281 RKTFFAQGETVISTLSREQSVDVRDAFVKGIYGRLFVYITHKINSAIYRPKNQARSAMGV 340
E V + + + A K +Y ++F+++ +IN + K + +GV
Sbjct: 354 YPRVGVGNEAVTKGETVSEVHNSVGALAKAVYEKMFLWMVIRINQQLD-TKQPRQYFIGV 412
Query: 341 LDIFGFENFNTNSGE 355
LDI GFE F+ NS E
Sbjct: 413 LDIAGFEIFDFNSFE 427
Score = 103 bits (257), Expect = 3e-23
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 470 FEQFCINYANENLQQFFVQHIFKLEQEEYNVEAINWQHIEFVDNQDALDLIAIKQLNIMA 529
FEQ CIN+ NE LQQFF H+F LEQEEY E I W+ I+F + A + K + I +
Sbjct: 426 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFS 485
Query: 530 LIDEESKFPKGTDHTLLAKLHKTH-GLHRNYLKPK---SDINTSFGLNHFAGVVFYDT 583
+++EE FPK TD + KL+ H G N+ KPK F L H+AG V Y+
Sbjct: 486 ILEEECMFPKATDTSFKNKLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNI 543
Score = 101 bits (253), Expect = 9e-23
Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 12/81 (14%)
Query: 353 SGESGAGKTESTKLILQYLAAISG------------KHSWIEQQILEANPILEAFGNAKT 400
+GESGAGKT +TK ++QY A I+ +E QI+ ANP+LEAFGNAKT
Sbjct: 129 TGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKT 188
Query: 401 IRNDNSSRFGKYIDIHFNSQG 421
+RNDNSSRFGK+I IHF + G
Sbjct: 189 VRNDNSSRFGKFIRIHFGATG 209
Score = 79.4 bits (195), Expect = 7e-16
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 576 AGVVFYDTRERDRVLTRNILVLQKNIRGWVYRRRYKRL---RAATMTIQKYWKGWAQRRR 632
AG++ RD L I Q RG++ R Y+ + R + IQ + + +
Sbjct: 720 AGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH 779
Query: 633 YQRMRVGYMRLQALIR 648
+ M+ + +++ L++
Sbjct: 780 WPWMK-LFFKIKPLLK 794
Score = 57.4 bits (138), Expect = 4e-09
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 414 DIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQ 472
D H+ S+G IT DD E SA+ +L FS ++ ++KL AV+H GN+ F+Q
Sbjct: 262 DYHYVSEG-EITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHYGNLKFKQ 319
Score = 56.7 bits (136), Expect = 9e-09
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 72 GSETRKRTPTLSTQFKKSLDCLMKTLSNCQPFFIRCIKPNEFKKPMQI--------LEAN 123
G + T+S F+++L+ LM L + P F+RCI PNE K P + L N
Sbjct: 590 GKKKGSSFQTVSALFRENLNKLMANLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCN 649
Query: 124 PILEA 128
+LE
Sbjct: 650 GVLEG 654
Score = 51.6 bits (123), Expect = 3e-07
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 643 LQALIRSRLLSHRFRHLRGHIVGLQARARGYLTRRMYA---QKMWAIVKIQAHVRRMIAQ 699
+A + L R L I QAR RG+L R Y ++ +I IQ +VR +
Sbjct: 718 FKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNV 777
Query: 700 RHYQKLQ 706
+H+ ++
Sbjct: 778 KHWPWMK 784
Score = 45.5 bits (107), Expect = 2e-05
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 607 RRRYKRLRAATMTIQKYWKGWAQRRRYQRM---RVGYMRLQALIRSRLLSHRFRHLRG 661
R +L Q +G+ R Y+ M R +Q +RS + + ++
Sbjct: 728 EMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWMKL 785
Score = 36.2 bits (83), Expect = 0.016
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 629 QRRRYQRMRVGYMRLQALIRSRLLSHRFRHL---RGHIVGLQARARGYLTRRMYAQKMWA 685
+ R ++ QA R L+ +R + R I +Q R ++ + + M
Sbjct: 727 EEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW-PWMKL 785
Query: 686 IVKIQA 691
KI+
Sbjct: 786 FFKIKP 791
Score = 35.5 bits (81), Expect = 0.024
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 666 LQARARGYLTRRMYAQKMWAIVKIQAHVRRMIAQRHYQKLQFEYQSQI 713
+A G L + I QA R + + Y+ + +S
Sbjct: 718 FKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIF 765
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 29.9 bits (67), Expect = 0.24
Identities = 5/51 (9%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 425 TCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCI 475
+ + ++ + + + + V++L + + H G ++ ++F +
Sbjct: 18 SLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWEL-SDIDHDGMLDRDEFAV 67
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 30.9 bits (69), Expect = 0.35
Identities = 17/103 (16%), Positives = 34/103 (33%)
Query: 354 GESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYI 413
G S +GK+ + L H++ + + G ++ RN+N R +
Sbjct: 31 GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVA 90
Query: 414 DIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVF 456
+ +S +IT + R +V +E
Sbjct: 91 KLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFV 133
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.6 bits (60), Expect = 3.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 354 GESGAGKTESTKLILQYLAAISGKHSWIEQQILE 387
GE G GKT K I++ L + E + E
Sbjct: 7 GEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPE 40
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.9 bits (62), Expect = 4.0
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 354 GESGAGKTESTKLILQYLAAISGKHSWIEQQILEANP 390
G SG GK+ L+ ++ +G+ + Q I +
Sbjct: 35 GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Length = 201
Score = 27.1 bits (59), Expect = 5.7
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 418 NSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCINY 477
NS+ G+++ E + +F++E++ ++ +G I ++F Y
Sbjct: 2 NSKSGALSKE---------ILEELQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIY 52
Query: 478 ANENLQ---QFFVQHIFKL 493
+ + + + QH+F+
Sbjct: 53 SKFFPEADPKAYAQHVFRS 71
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.2 bits (59), Expect = 5.8
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 5/164 (3%)
Query: 353 SGESGAGKTESTKLILQYLAAISGKHSWIEQQILEAN---PILEAFGNAKTIRNDNSSRF 409
SG + +GK+ I+Q L + + IL + +L + AK ++ +
Sbjct: 8 SGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDH 67
Query: 410 GKYIDIHFNSQGGSITCEGRDDAAEFADIRSAMKVLQFSDEDIWDV-FKLLAAVLHTGNI 468
D + EG+ D S + + DV ++ +
Sbjct: 68 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEV 127
Query: 469 NFEQFCINYANENLQQFFVQHIFKLEQEE-YNVEAINWQHIEFV 511
+ + + + + + E ++E I Q+I FV
Sbjct: 128 RDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFV 171
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 92
Score = 25.8 bits (56), Expect = 8.0
Identities = 4/47 (8%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 429 RDDAAEFADIRSAMKVLQFSDEDIWDVFKLLAAVLHTGNINFEQFCI 475
+ + + + ++ +++L + G + ++FC
Sbjct: 22 LNGFIPGSAAKEFFTKSKLPILELSHIWEL-SDFDKDGALTLDEFCA 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.401
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,829,340
Number of extensions: 138373
Number of successful extensions: 619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 66
Length of query: 750
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 658
Effective length of database: 1,144,436
Effective search space: 753038888
Effective search space used: 753038888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)