BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14299
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 176/239 (73%)
Query: 9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
PGG+ISNMYSI ARY+ P+ K KG++ +P L +FTSE SHYS+ KA LG G DNVI
Sbjct: 161 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVI 220
Query: 69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
+K NERG++I + E I + + +P +VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 221 LIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLW 280
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
+HVDA WGG L+ S K+ L GI RANSV+WNPH M+G LQCS +L+KEKG+L N
Sbjct: 281 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQ 340
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
A+YLFQQDK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++ ++ +
Sbjct: 341 MHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 399
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 160/290 (55%), Gaps = 30/290 (10%)
Query: 164 KMLGAPLQCSILLIKEKGLL-HQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK 222
K++ A + IL K+KG + NATA T ++ +FD + K +
Sbjct: 229 KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG-------AFDPIQEIADICEK---YN 278
Query: 223 LWLMWKARGNLGF------RHFVD-----NAVDCSRGSMTFSTLLCFDL----QGLLHQA 267
LWL A G RH ++ N+V + M L C + +G+L
Sbjct: 279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGC 338
Query: 268 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 327
N A+YLFQQDK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++ ++ +
Sbjct: 339 NQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA 398
Query: 328 RYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV 386
Y ++I R F +V E + TN+CFW+IP SLR + L KVAP+IK ++
Sbjct: 399 EYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM 458
Query: 387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
GT M+GYQP + NFFR+V + +PA+++ D+D+ I++IE G ++
Sbjct: 459 ESGTTMVGYQPQGDKA--NFFRMVIS-NPAATQSDIDFLIEEIERLGQDL 505
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 298 bits (764), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 136/239 (56%), Positives = 174/239 (72%)
Query: 9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
PGG+ISNMYSI ARY+ P+ K KG++ +P L +FTSE SHYS+ KA LG G DNVI
Sbjct: 158 PGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVI 217
Query: 69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
+K NERG++I + E I + + +P +VNATAGTTV GAFDP+ EIA +CEKY+LW
Sbjct: 218 LIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLW 277
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
+HVDA WGG L+ S K+ L GI RANSV+WNPH M+G LQCS +L+KEKG+L N
Sbjct: 278 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQ 337
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++ ++ +
Sbjct: 338 MCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE 396
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 158/290 (54%), Gaps = 30/290 (10%)
Query: 164 KMLGAPLQCSILLIKEKGLL-HQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK 222
K++ A + IL K+KG + NATA T ++ +FD + K +
Sbjct: 226 KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG-------AFDPIQEIADICEK---YN 275
Query: 223 LWLMWKARGNLGF------RHFVD-----NAVDCSRGSMTFSTLLCFDL----QGLLHQA 267
LWL A G RH ++ N+V + M L C + +G+L
Sbjct: 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGC 335
Query: 268 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 327
N A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++ ++ +
Sbjct: 336 NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA 395
Query: 328 RYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV 386
Y ++I R F +V E + TN+CFW+IP SLR + L KVAP+IK ++
Sbjct: 396 EYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM 455
Query: 387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
GT M+GYQP + NFFR+V + +PA+++ D+D+ I++IE G ++
Sbjct: 456 ESGTTMVGYQPQGDKA--NFFRMVIS-NPAATQSDIDFLIEEIERLGQDL 502
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 178/239 (74%)
Query: 9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
PGG+ISNMY++ +AR+++ P+ K KG++ LP L FTSE SH+S+ K A LGIG D+VI
Sbjct: 154 PGGAISNMYAMMIARFKMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVI 213
Query: 69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
+K +ERG+MI S LE+ I + + +P V+ATAGTTV GAFDPL +A +C+KY +W
Sbjct: 214 LIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIW 273
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
MHVDA WGG L+ S K+ + L G+ RANSV+WNPH M+G PLQCS LL++E+GL+ N
Sbjct: 274 MHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQ 333
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
A+YLFQQDK YD+S+DTGDK++QCGR VD FKLWLMW+A+G GF VD ++ +
Sbjct: 334 MHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAE 392
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 162/289 (56%), Gaps = 30/289 (10%)
Query: 164 KMLGAPLQCSILLIKEKGLL-HQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK 222
KM+ + L+ IL K+KG + +ATA T ++ +FD +K +K
Sbjct: 222 KMIPSDLERRILEAKQKGFVPFLVSATAGTTVYG-------AFDPLLAVADICKK---YK 271
Query: 223 LWL----MWKARGNLGFRH-------FVDNAVDCSRGSMTFSTLLCFDL----QGLLHQA 267
+W+ W + +H N+V + M L C L +GL+
Sbjct: 272 IWMHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNC 331
Query: 268 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 327
N A+YLFQQDK YD+S+DTGDK++QCGR VD FKLWLMW+A+G GF VD ++ +
Sbjct: 332 NQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELA 391
Query: 328 RYFLSQISQRPGFRLVIP-EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLV 386
Y + I R G+ +V + Q TN+CFW+IP SLR ++E S LSKVAP IK +++
Sbjct: 392 EYLYNIIKNREGYEMVFDGKPQHTNVCFWYIPPSLRTLEDNEERMSRLSKVAPVIKARMM 451
Query: 387 LGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAE 435
GT M+ YQPL + NFFR+V + +PA++ QD+D+ I++IE G +
Sbjct: 452 EYGTTMVSYQPLGDKV--NFFRMVIS-NPAATHQDIDFLIEEIERLGQD 497
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 135/240 (56%), Positives = 181/240 (75%), Gaps = 1/240 (0%)
Query: 9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
PGGSISNMY++ LARY+ PD K++GL LPPL +FTS++ HYS+ K A +LG+G D+V
Sbjct: 172 PGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVR 231
Query: 69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
VK +ERG+M+ LE+ I + AE +P V+AT+GTTVLGAFDPL+ IA VC+++ LW
Sbjct: 232 VVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLW 291
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE-KGLLHQAN 187
+HVDA WGGS++ S+ + +L GI RA+SV+WNPHK+L A LQCS LL+++ LL + +
Sbjct: 292 LHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCH 351
Query: 188 ATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
+ A+YLFQQDKFYDV+ DTGDK VQCGR+VD KLWLMWKA+G+ G +D A +R
Sbjct: 352 GSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLAR 411
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/185 (49%), Positives = 124/185 (67%), Gaps = 6/185 (3%)
Query: 253 STLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 312
S LL D LL + + + A+YLFQQDKFYDV+ DTGDK VQCGR+VD KLWLMWKA+G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVI-PEFQCTNICFWFIPVSLRDKVEDETWW 371
+ G +D A +RY + ++ +R GF LV+ PEF N+CFWF+P SLR K E +
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEF--VNVCFWFVPPSLRGKQESPDYH 453
Query: 372 STLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIEL 431
LSKVAP +KE++V G++MIGYQP H NFFR+V + A + DMD+ ++++E
Sbjct: 454 ERLSKVAPVLKERMVKEGSMMIGYQP--HGTRGNFFRVVVA-NSALTCADMDFLLNELER 510
Query: 432 RGAEV 436
G ++
Sbjct: 511 LGQDL 515
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 19/232 (8%)
Query: 10 GGSISNMYSICLARY----RLDPDTKRK-GL-SHLPPLCMFTSEDSHYSMLKAAHWLGIG 63
GG+ SN + LAR +L + +K GL + L + S+ SH+++ K+A W G+G
Sbjct: 166 GGTQSNQXGLXLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWXGLG 225
Query: 64 MDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCE 123
V V N G + L++ I + AE IP + TAGTT GA D LD IA
Sbjct: 226 EKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADXAV 285
Query: 124 KYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG-- 181
K+D W HVD +GG+LI S S LKG+ RA+S+S + HK+ + C LL+ +K
Sbjct: 286 KHDXWXHVDGAYGGALILSSHKSR-LKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF 344
Query: 182 --LLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 231
LLH A+ YL ++ +D + DKS+ ++ DA K++ + G
Sbjct: 345 KFLLHHAD-----YLNRE---HDELPNLVDKSIATTKRFDALKVFXTXQNVG 388
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 22/287 (7%)
Query: 41 LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFV 100
L ++S+ +H S+ +A G+ + + ++ M S L++ ++ A IP F+
Sbjct: 183 LVAYSSDQAHSSVERAGLIGGVKLKAI---PSDGNFAMRASALQEALERDKAAGLIPFFM 239
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW 160
AT GTT +FD L E+ +C K D+W+HVDA + GS ++ +L G+ A+S ++
Sbjct: 240 VATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNF 299
Query: 161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDA 220
NPHK L CS + +K++ L A TYL + + D + GR+ +
Sbjct: 300 NPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRS 359
Query: 221 FKLWLMWKARGNLGFRHFVDNAVDCS-------RGSMTFST-------LLCFDLQGLLHQ 266
K+W +++ G G + ++ V S R F L+CF L+G ++
Sbjct: 360 LKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKG-SNK 418
Query: 267 ANATAATYLFQQDKFYDVSFDTGDKSVQ----CGRKVDAFKLWLMWK 309
N + K + V DK V C R V++ + W+
Sbjct: 419 VNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWE 465
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 273 TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLS 332
TYL + + D + GR+ + K+W +++ G G + ++ V S F S
Sbjct: 331 TYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFES 390
Query: 333 QISQRPGFRLVIPEFQCTNICF 354
+ Q P F + + E +CF
Sbjct: 391 LVRQDPRFEICV-EVILGLVCF 411
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 131/295 (44%), Gaps = 32/295 (10%)
Query: 38 LPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIP 97
L L + S+ +H S+ +A IG + + ++ + M S L++ ++ A IP
Sbjct: 180 LEKLVAYASDQAHSSVERAGL---IGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIP 236
Query: 98 LFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANS 157
FV AT GTT +FD L E+ +C + D+W+HVDA + GS ++ +L G+ A+S
Sbjct: 237 FFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADS 296
Query: 158 VSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRK 217
++NPHK L CS + +K + L A YL + + D + GR+
Sbjct: 297 FNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR 356
Query: 218 VDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMTFST--------------LLCFDLQG- 262
+ K+W +++ G G + ++ V S F L+CF L+G
Sbjct: 357 FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS 416
Query: 263 ------LLHQANATAATYLF--QQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK 309
LL + N+ +L + + + F C RKV++ + L W+
Sbjct: 417 DGLNEALLERINSARKIHLVPCRLRGQFVLRFAI------CSRKVESGHVRLAWE 465
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 296 GRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICF 354
GR+ + K+W +++ G G + ++ V S F + + Q P F V E +CF
Sbjct: 354 GRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFE-VCAEVTLGLVCF 411
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 22/287 (7%)
Query: 41 LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFV 100
L ++S+ +H S+ +A G+ + + ++ M S L++ ++ A IP F+
Sbjct: 183 LVAYSSDQAHSSVERAGLIGGVKLKAI---PSDGNFAMRASALQEALERDKAAGLIPFFM 239
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW 160
AT GTT +FD L E+ +C K D+W+HVDA + GS ++ +L G+ A+S ++
Sbjct: 240 VATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNF 299
Query: 161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDA 220
NPH L CS + +K++ L A TYL + + D + GR+ +
Sbjct: 300 NPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRS 359
Query: 221 FKLWLMWKARGNLGFRHFVDNAVDCS-------RGSMTFST-------LLCFDLQGLLHQ 266
K+W +++ G G + ++ V S R F L+CF L+G ++
Sbjct: 360 LKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKG-SNK 418
Query: 267 ANATAATYLFQQDKFYDVSFDTGDKSVQ----CGRKVDAFKLWLMWK 309
N + K + V DK V C R V++ + W+
Sbjct: 419 VNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWE 465
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 273 TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLS 332
TYL + + D + GR+ + K+W +++ G G + ++ V S F S
Sbjct: 331 TYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFES 390
Query: 333 QISQRPGFRLVIPEFQCTNICF 354
+ Q P F + + E +CF
Sbjct: 391 LVRQDPRFEICV-EVILGLVCF 411
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 123/267 (46%), Gaps = 28/267 (10%)
Query: 41 LCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFV 100
L + S+ +H S+ +A G+ + +V +E +M + LE+ I+ +AE IP +
Sbjct: 183 LVGYCSDQAHSSVERAGLLGGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFYA 238
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSW 160
T GTT AFD LDE V K++LW+HVDA + GS +Y ++KGI A+S ++
Sbjct: 239 VVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNF 298
Query: 161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDA 220
NPH + CS + +K+ + NA L+ + + D + GR+ A
Sbjct: 299 NPHXWMLVNFDCSAMWLKDPSWV--VNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRA 356
Query: 221 FKLWLMWKARG--NLGF---RH------FVDNAVDCSRGSMTFST---LLCFDLQG---- 262
KLW + + G NL RH F D V SR + L+CF L+G
Sbjct: 357 LKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNER 416
Query: 263 ---LLHQANATAATYLFQQDKFYDVSF 286
LL + N +L K DV F
Sbjct: 417 NEALLKRINGRGHIHLVPA-KIKDVYF 442
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 27 DPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKT-------NERGQMI 79
+PD L+ L + S+ +H S+ KA G+ +++++K + RG+ +
Sbjct: 177 EPDADESSLNAR--LVAYASDQAHSSVEKA------GLISLVKMKFLPVDDNFSLRGEAL 228
Query: 80 CSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSL 139
+E+ Q L +P+FV AT GTT + AFD L E+ +C + LW+H+DA + G+
Sbjct: 229 QKAIEEDKQRGL----VPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTA 284
Query: 140 IFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDK 199
++ LKGI A+S ++NP K + C+ +K+K L Q + YL +
Sbjct: 285 FLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS 344
Query: 200 FYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
V+ D + R+ + KLW + ++ G + V + + ++
Sbjct: 345 --GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAK 390
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 102 ATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI--FSEKYSFVLKGINR----- 154
AGTT LG D ++E++ + ++ ++++HVDA +GG +I +KY KG+N
Sbjct: 177 GIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK--KKGVNYKFDFS 234
Query: 155 --ANSVSWNPHKMLGAPLQCSILLIKEKG 181
+S++ +PHK P+ +L K+ G
Sbjct: 235 LGVDSITIDPHKXGHCPIPSGGILFKDIG 263
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 49 SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
+H + KAA + GI ++R + + + + + I + + V +A
Sbjct: 201 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGXP 251
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
G DP+ EIA + ++ + HVDAC GG ++ ++E+ + F L+G+ SVS
Sbjct: 252 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 308
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
+ HK S++L + LLH
Sbjct: 309 DTHKYGYGAKGTSVILYRRPDLLH 332
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 49 SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
+H + KAA + GI ++R + + + + + I + + V +A
Sbjct: 205 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYP 255
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
G DP+ EIA + ++ + HVDAC GG ++ ++E+ + F L+G+ SVS
Sbjct: 256 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 312
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
+ HK S++L + LLH
Sbjct: 313 DTHKYGYGAKGTSVILYRRPDLLH 336
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 49 SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
+H + KAA + GI ++R + + + + + I + + V +A
Sbjct: 201 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYP 251
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
G DP+ EIA + ++ + HVDAC GG ++ ++E+ + F L+G+ SVS
Sbjct: 252 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 308
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
+ H S++L + LLH
Sbjct: 309 DTHAYGYGAKGTSVILYRRPDLLH 332
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 49 SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
+H + KAA + GI ++R + + + + + I + + V +A
Sbjct: 201 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYP 251
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
G DP+ EIA + ++ + HVDAC GG ++ ++E+ + F L+G+ SVS
Sbjct: 252 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 308
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
+ H S++L + LLH
Sbjct: 309 DTHXYGYGAKGTSVILYRRPDLLH 332
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 49 SHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTV 108
+H + KAA + GI ++R + + + + + I + + V +A
Sbjct: 205 AHAAFDKAAQYFGI---KLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYP 255
Query: 109 LGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK-------YSFVLKGINRANSVSW 160
G DP+ EIA + ++ + HVDAC GG ++ ++E+ + F L+G+ SVS
Sbjct: 256 HGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV---TSVSA 312
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
+ H S++L + LLH
Sbjct: 313 DTHXYGYGAKGTSVILYRRPDLLH 336
>pdb|1H0C|A Chain A, The Crystal Structure Of Human Alanine:glyoxylate
Aminotransferase
Length = 392
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 35/204 (17%)
Query: 2 NLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHL----PPLCMFTSEDSH------- 50
NL P ++ G + + S+ Y++ D ++G+ ++ PL + S H
Sbjct: 32 NLPPRIMAAGGLQMIGSMSKDMYQIM-DEIKEGIQYVFQTRNPLTLVISGSGHCALEAAL 90
Query: 51 YSMLKAAHWLGIGMDNVIRVKTNERGQMICS------------FLEQTIQTSLAEKKIPL 98
++L+ +G + + + + G+ I + + Q ++ LA+ K P+
Sbjct: 91 VNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHK-PV 149
Query: 99 FVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVD--ACWGGSLIFSEKYSFVLKGINRAN 156
+ T G + G PLD +C +Y + VD A GG+ ++ ++ +GI+
Sbjct: 150 LLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDR-----QGIDILY 204
Query: 157 SVSWNPHKMLGAPLQCSILLIKEK 180
S S K L AP S++ +K
Sbjct: 205 SGS---QKALNAPPGTSLISFSDK 225
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 110 GAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK--------YSFVLKGINRANSVSW 160
G D ++ + + +KY L +HVD+C G ++ F EK F + G+ S+S
Sbjct: 220 GIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV---TSISC 276
Query: 161 NPHKMLGAPLQCSILLIKEKGL-LHQ 185
+ HK AP S+++ + L +HQ
Sbjct: 277 DTHKYGFAPKGSSVIMYRNSDLRMHQ 302
>pdb|3R9A|A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|C Chain C, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 394
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 35/204 (17%)
Query: 2 NLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHL----PPLCMFTSEDSH------- 50
NL P ++ G + + S+ Y++ D ++G+ ++ PL + S H
Sbjct: 34 NLPPRIMAAGGLQMIGSMSKDMYQIM-DEIKEGIQYVFQTRNPLTLVISGSGHCALEAAL 92
Query: 51 YSMLKAAHWLGIGMDNVIRVKTNERGQMICS------------FLEQTIQTSLAEKKIPL 98
++L+ +G + + + + G+ I + + Q ++ LA+ K P+
Sbjct: 93 VNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHK-PV 151
Query: 99 FVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVD--ACWGGSLIFSEKYSFVLKGINRAN 156
+ T G + G PLD +C +Y + VD A GG+ ++ ++ +GI+
Sbjct: 152 LLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDR-----QGIDILY 206
Query: 157 SVSWNPHKMLGAPLQCSILLIKEK 180
S S L AP S++ +K
Sbjct: 207 SGS---QXALNAPPGTSLISFSDK 227
>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGX|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGW|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
pdb|3KGW|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
Length = 393
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 21/125 (16%)
Query: 85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVD--ACWGGSLIFS 142
Q ++ LA+ K P+ + G + G PLD +C +Y + VD A GG I+
Sbjct: 138 QEVEEGLAQHK-PVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYM 196
Query: 143 EKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYD 202
++ +GI+ S S K+L AP S++ +K A Y K
Sbjct: 197 DQ-----QGIDIMYSSS---QKVLNAPPGISLISFNDK----------AKYKVYSRKTKP 238
Query: 203 VSFDT 207
VSF T
Sbjct: 239 VSFYT 243
>pdb|1J04|A Chain A, Structural Mechanism Of Enzyme Mistargeting In Hereditary
Kidney Stone Disease In Vitro
Length = 392
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 35/204 (17%)
Query: 2 NLKPFLLPGGSISNMYSICLARYRLDPDTKRKGLSHL----PPLCMFTSEDSH------- 50
NL P ++ G + + S+ Y++ D ++G+ ++ PL + S H
Sbjct: 32 NLPPRIMAAGGLQMIGSMSKDMYQIM-DEIKEGIQYVFQTRNPLTLVISGSGHCALEAAL 90
Query: 51 YSMLKAAHWLGIGMDNVIRVKTNERGQMICS------------FLEQTIQTSLAEKKIPL 98
++L+ +G + + + + G+ I + + Q ++ LA+ K P+
Sbjct: 91 VNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHK-PV 149
Query: 99 FVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVD--ACWGGSLIFSEKYSFVLKGINRAN 156
+ T G + G PLD +C +Y + VD A GG+ ++ ++ +GI+
Sbjct: 150 LLFLTHGESSTGVLQPLDGFRELCHRYKCLLLVDSVASLGGTPLYMDR-----QGIDILY 204
Query: 157 SVSWNPHKMLGAPLQCSILLIKEK 180
S S L AP S++ +K
Sbjct: 205 SGS---QXALNAPPGTSLISFSDK 225
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 110 GAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK--------YSFVLKGINRANSVSW 160
G D ++ + + +KY L +HVD+C G ++ F EK F + G+ S+S
Sbjct: 220 GIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV---TSISC 276
Query: 161 NPHKMLGAPLQCSILLIKEKGL-LHQ 185
+ H AP S+++ + L +HQ
Sbjct: 277 DTHXYGFAPKGSSVIMYRNSDLRMHQ 302
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 100 VNATAGTTVLGAFDPLDEIATVCEKY------DLWMHVDACWGGSLIFSEKYSFVLKGI- 152
V T G T G ++ + +K+ D+ MH+DA GG L FV I
Sbjct: 205 VVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLA-----PFVAPDIV 259
Query: 153 -----NRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSF 205
R S+S + HK APL C ++ +++ L Q YL Q + ++F
Sbjct: 260 WDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINF 317
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 100 VNATAGTTVLGAFDPLDEIATVCEKY------DLWMHVDACWGGSLIFSEKYSFVLKGI- 152
V T G T G ++ + +K+ D+ MH+DA GG L FV I
Sbjct: 205 VVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLA-----PFVAPDIV 259
Query: 153 -----NRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSF 205
R S+S + HK APL C ++ +++ L Q YL Q + ++F
Sbjct: 260 WDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINF 317
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 100 VNATAGTTVLGAFDPLDEIATVCEKY------DLWMHVDACWGGSLIFSEKYSFVLKGI- 152
V T G T G ++ + +K+ D+ MH+DA GG L FV I
Sbjct: 191 VVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLA-----PFVAPDIV 245
Query: 153 -----NRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSF 205
R S+S + HK APL C ++ +++ L Q YL Q + ++F
Sbjct: 246 WDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINF 303
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+F+ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YFVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLR 269
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLR 269
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLR 269
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLR 269
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLR 269
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLR 269
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLR 269
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVED---ETWWSTLSKVAP-RIKEKLVLGGTLMIGYQPLQ 399
+++ V L +KVED E +W+ L P + EKLV G +L PL+
Sbjct: 221 YYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLR 269
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 103 TAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWG--GSLIFSEKYSFVLKGINRANSVSW 160
T G + G PL+ + +C ++D + VDA G + +K+ ++V
Sbjct: 150 THGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEI--------DAVYT 201
Query: 161 NPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQD 198
K+LGAP + + I K L N + +F D
Sbjct: 202 GAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 239
>pdb|1R9W|A Chain A, Crystal Structure Of The Dna-Binding Domain Of The Human
Papillomavirus Type 18 (Hpv-18) Replication Initiation
Protein E1
Length = 145
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 19 ICLARYRLDPD--TKRKGLS---HLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRV 70
+ L RY+ T KGLS H+P CM S + A +W G+ N+ V
Sbjct: 74 LALLRYKCGKSRLTVAKGLSTLLHVPETCMLIQPPKLRSSVAALYWYRTGISNISEV 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,314,808
Number of Sequences: 62578
Number of extensions: 541051
Number of successful extensions: 1203
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 54
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)