RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14299
(448 letters)
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 244 bits (624), Expect = 5e-77
Identities = 89/235 (37%), Positives = 125/235 (53%), Gaps = 3/235 (1%)
Query: 9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
G S SN+ ++ AR + K G L L +TS+ +H S+ KAA G+ +
Sbjct: 110 GGSSESNLLALLAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVEL---R 166
Query: 69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
+ T+E G+M LE+ I+ IP FV AT GTT GAFDPL E+ +C KYDLW
Sbjct: 167 EIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLW 226
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
+HVDA + GS ++ L GI RA+S S+NPHK + L CS L +++KG L QA
Sbjct: 227 LHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQ 286
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAV 243
YL DK DV+ D GD + R+ KLW + ++ G G ++ + V
Sbjct: 287 FNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHV 341
Score = 85.5 bits (212), Expect = 3e-18
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
G L QA YL DK DV+ D GD + R+ KLW + ++ G G ++ +
Sbjct: 279 GALQQALQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIR 338
Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFI 357
V+ ++YF + + + F + +CF
Sbjct: 339 RHVELAKYFEALVRKDSRFEICAER-GLGLVCFRLK 373
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 212 bits (541), Expect = 6e-65
Identities = 79/239 (33%), Positives = 110/239 (46%), Gaps = 44/239 (18%)
Query: 9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
GGS SN+ ++ AR R K G + L + S+ +H S+ KAA +L + V
Sbjct: 64 SGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDV---KVR 120
Query: 69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
V +E G+M LE I AE P+ V ATAGTT GA DPL+EIA + EKYDLW
Sbjct: 121 LVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLW 180
Query: 129 MHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
+HVDA +GG L+ + + GI R +S+S +PHK PL CS +L++
Sbjct: 181 LHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR---------- 230
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
A KLW + G G+ +D VD ++
Sbjct: 231 -------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAK 258
Score = 76.1 bits (188), Expect = 3e-15
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 299 VDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIP 358
V A KLW + G G+ +D VD ++Y I PGF L+ + +CF P
Sbjct: 229 VRALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-NLSLVCFRLKP 287
Query: 359 VSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASS 418
D ++ + ++L G + L N R +P ++
Sbjct: 288 SVKLD------------ELNYDLSDRLNERGGWHVPATTLGGP---NVLR-FVVTNPLTT 331
Query: 419 RQDMDYAIDQIE 430
R D D ++ IE
Sbjct: 332 RDDADALLEDIE 343
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 159 bits (403), Expect = 1e-43
Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 14/239 (5%)
Query: 10 GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
GG+ +N+ ++ AR R + + SE +H+S KAA +LG+G+ V
Sbjct: 127 GGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPT 186
Query: 70 VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM 129
V T ++ LE+ I E I V TAGTT G+ D ++E+A + E+Y +W+
Sbjct: 187 VPT--DYRIDVDALEEAI----DENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWL 240
Query: 130 HVDACWGGSLI-FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANA 188
HVDA +GG L+ F E G+ +S++ + HK AP+ C ++L +++ L +
Sbjct: 241 HVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILI 300
Query: 189 TAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
A YL + + + GR A L+ + G G+R +D ++ +R
Sbjct: 301 FADYYL----PGGGIP-NFTILGSRPGR--QALALYANLRRLGREGYRKLLDRTLELAR 352
Score = 35.4 bits (82), Expect = 0.049
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 287 DTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVI-P 345
+ + GR A L+ + G G+R +D ++ +RY ++ + F LV P
Sbjct: 313 NFTILGSRPGR--QALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP 370
Query: 346 EFQCTNICF-----WFIPVSLRDKVEDETW 370
E + F L ++++ W
Sbjct: 371 ELPI--VAFRLKDDEDTLADLSERLDRRGW 398
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 132 bits (334), Expect = 9e-34
Identities = 74/195 (37%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Query: 10 GGSISNMYSICLARYR-LDPDTKRKG---------LSH--LPPLCMFTSEDSHYSMLKAA 57
GG+++N+ ++ +AR R L D KG L H L + SE HYS+ KAA
Sbjct: 167 GGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAA 226
Query: 58 HWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKI-PLFVNATAGTTVLGAFDPLD 116
LGIG DN+I +KT+ ++ L LAE+ I PL + AGTT G DPLD
Sbjct: 227 DVLGIGRDNLIAIKTDANNRIDVDALRDKCA-ELAEQNIKPLAIVGVAGTTETGNIDPLD 285
Query: 117 EIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILL 176
E+A + ++ HVDA WGG+ + S Y +LKGI RA+SV+ + HK L P+ ++L
Sbjct: 286 EMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVL 345
Query: 177 IKEKGLL----HQAN 187
K+ L+ H A
Sbjct: 346 FKDPALMSAIEHHAE 360
Score = 31.2 bits (71), Expect = 1.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 312 GNLGFRHFVDNAVDCSRYFLSQISQRPGFRLV 343
G G+ +D +++ ++YF I Q+P F LV
Sbjct: 394 GRKGYELLIDQSIEKAKYFADLIQQQPDFELV 425
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 117 bits (295), Expect = 1e-28
Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 2/219 (0%)
Query: 31 KRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQ--MICSFLEQTIQ 88
K+ G + LP L ++ S+ +H S KA GI +N+ +KT+ M LE+ I
Sbjct: 220 KKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAIS 279
Query: 89 TSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV 148
LA+ IP F+ AT GTT A DPL + + +KY +W+HVDA + G+ +Y
Sbjct: 280 HDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF 339
Query: 149 LKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTG 208
+ GI A+S + N HK L A CS L +K++ L A T YL + D +
Sbjct: 340 IDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYK 399
Query: 209 DKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
D + R+ + KLW++ + G+ R+F+ + V+ ++
Sbjct: 400 DWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAK 438
Score = 43.9 bits (103), Expect = 1e-04
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 18/167 (10%)
Query: 209 DKSVQCGRKVDAFKLWLMWKAR--GNL----GFRHFVD----------NAVDCSRGSMTF 252
D V G + +WL A GN +R F+D NA + T
Sbjct: 304 DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC 363
Query: 253 STLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 312
S L D L+ A T YL + D + D + R+ + KLW++ + G
Sbjct: 364 SPLWVKDRYSLI-DALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYG 422
Query: 313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPV 359
+ R+F+ + V+ +++F ++Q P F +V + + +CF PV
Sbjct: 423 SENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY-FSLVCFRLAPV 468
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 100 bits (251), Expect = 6e-23
Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 2/219 (0%)
Query: 31 KRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICS--FLEQTIQ 88
++ G + L L ++ S+ +H ++ KA GI +N +KT+ + L + I
Sbjct: 172 RKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAIS 231
Query: 89 TSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFV 148
T L+ IP F+ AT GTT A DPL E+ + + +W HVDA + GS +Y
Sbjct: 232 TDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHY 291
Query: 149 LKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTG 208
+ G+ A+S + N HK CS+L +K++ L Q+ +T +L + + D
Sbjct: 292 IDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYK 351
Query: 209 DKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSR 247
D + GR+ + KLW++ + G + ++ N + ++
Sbjct: 352 DWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAK 390
Score = 39.1 bits (91), Expect = 0.004
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 244 DCSRGSMTFSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFK 303
DCS LL + L Q+ +T +L + + D D + GR+ + K
Sbjct: 314 DCS--------LLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLK 365
Query: 304 LWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVS 360
LW++ + G + ++ N + ++ F ++Q F +V P + +CF +P
Sbjct: 366 LWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR-IFSLVCFRLVPPK 421
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 83.6 bits (207), Expect = 1e-17
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 47/250 (18%)
Query: 10 GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
GG+ +N+ ++ A+ L + KR +P E +H+S KAA LG+ +
Sbjct: 84 GGTEANIQAVRAAKN-LAREEKRTPNIIVP-------ESAHFSFEKAAEMLGL---ELRY 132
Query: 70 VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM 129
+E + +E I + I + AGTT LG D ++E++ + + +++
Sbjct: 133 APLDEDYTVDVKDVEDLID----DNTIGIV--GIAGTTELGQIDDIEELSKIALENGIYL 186
Query: 130 HVDACWGGSLI-FSE------KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGL 182
HVDA +GG +I F + + F L G+ S++ +PHKM +P+ +L + K
Sbjct: 187 HVDAAFGGFVIPFLKKGYNPPPFDFSLPGV---QSITIDPHKMGLSPIPAGGILFRSKSY 243
Query: 183 LHQANATAATYLFQQDKFYDVSFDTGDKSVQC---GRK--VDAFKLWLMWKARGNLGFRH 237
L + + A YL T K Q G + A + + K G G+R
Sbjct: 244 L-KYLSVDAPYL------------TVKK--QATITGTRSGASAAATYAVIKYLGREGYRK 288
Query: 238 FVDNAVDCSR 247
V ++ +R
Sbjct: 289 IVAECMENTR 298
Score = 28.9 bits (65), Expect = 6.3
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 305 WLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPE-----FQCTNICFWFIPV 359
+ + K G G+R V ++ +RY + ++ + ++ P F+ + P
Sbjct: 275 YAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEVDD------PE 328
Query: 360 SLRDKVEDETW 370
+R K+ D W
Sbjct: 329 EVRKKLRDRGW 339
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 82.0 bits (203), Expect = 5e-17
Identities = 67/250 (26%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 10 GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
GG+ N+Y LAR P ++ S+D+HYS+ K A L I VI
Sbjct: 92 GGTEGNLYGCYLARELF------------PDGTLYYSKDTHYSVSKIARLLRI-KSRVIT 138
Query: 70 VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY---D 126
N G++ L I+ + K P + A GTT+ GA D + EI + +K D
Sbjct: 139 SLPN--GEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDD 193
Query: 127 LWMHVDACWGGSLI-FSE---KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGL 182
++H DA G ++ F +SF GI+ S++ + HK +G+P+ C I+L K+K +
Sbjct: 194 YYIHADAALSGMILPFVNNPPPFSFA-DGID---SIAISGHKFIGSPMPCGIVLAKKKYV 249
Query: 183 LHQANATAATYLFQQDKFY-DVSF-DTGDKSVQCGRKVDAFKLWLMWKA---RGNLGFRH 237
++ DV + + D+++ R + L+W A G+ G R
Sbjct: 250 ---------------ERISVDVDYIGSRDQTISGSR--NGHTALLLWAAIRSLGSKGLRQ 292
Query: 238 FVDNAVDCSR 247
V + +D ++
Sbjct: 293 RVQHCLDMAQ 302
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 80.7 bits (200), Expect = 1e-16
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 16/141 (11%)
Query: 47 EDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGT 106
E +H+S KAA LG+ + R ++ ++ +E I + V AGT
Sbjct: 111 ESAHFSFDKAADMLGV---ELRRAPLDDDYRVDVKAVEDLI-----DDNTIGIV-GIAGT 161
Query: 107 TVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI-FSEK---YSFVLKGINRANSVSWNP 162
T LG DP+ E++ + + +++HVDA +GG +I F + + F L G+ +S++ +P
Sbjct: 162 TELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV---DSITIDP 218
Query: 163 HKMLGAPLQCSILLIKEKGLL 183
HKM AP+ +L +++ L
Sbjct: 219 HKMGLAPIPAGGILFRDESYL 239
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis [Cellular processes,
Adaptations to atypical conditions].
Length = 608
Score = 74.5 bits (183), Expect = 3e-14
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 40/186 (21%)
Query: 50 HYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIP-LFVNATAGTTV 108
HYS LKAA +GIG+D VI V + +M + LE+ I+ LA +K P L V G+T
Sbjct: 232 HYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIR-KLAAEKTPILGVVGVVGSTE 290
Query: 109 LGAFDPLDEIATVCEKYD-----LWMHVDACWGG---SL--------------------- 139
GA D +D+I + K ++HVDA +GG ++
Sbjct: 291 EGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEY 350
Query: 140 -IFSEKYSFV-------LKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQANATAA 191
+F+EK ++ K I+ A SV+ +PHKM P ++I++ + + A
Sbjct: 351 GVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI-RMRDVISYFA 409
Query: 192 TYLFQQ 197
TY+F++
Sbjct: 410 TYVFEK 415
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 67.9 bits (166), Expect = 2e-12
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 11 GSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRV 70
G+ N++ I + R P ++ S +SHYS+ KAA M+ V +V
Sbjct: 94 GTEGNLHGILVGR------------EVFPDGILYASRESHYSVFKAARMYR--MEAV-KV 138
Query: 71 KTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD---- 126
T G++ LE+ + + + P +N GTTV GA D LD I + ++
Sbjct: 139 PTLPSGEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTED 195
Query: 127 -LWMHVD-ACWGGSLIFSEKYSFVL--KGINRANSVSWNPHKMLGAPLQCSILLIKEK 180
++H D A +G + F + V K I SVS + HK LG P+ C + L ++K
Sbjct: 196 RFYIHCDGALFGLMMPFVSRAPEVTFRKPI---GSVSVSGHKFLGCPMPCGVALTRKK 250
>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase.
Length = 470
Score = 60.2 bits (146), Expect = 8e-10
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 38 LPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIP 97
P ++ S +SHYS+ KAA + ++V T G++ C+ + + LA K P
Sbjct: 176 FPDGILYASRESHYSVFKAARMYRME---CVKVDTLVSGEIDCADFKAKL---LANKDKP 229
Query: 98 LFVNATAGTTVLGAFDPLDEIATVCEK----YD-LWMHVDACWGGSLI-FSEKYSFVL-- 149
+N GTTV GA D LD + E+ D ++H D G ++ F ++ V
Sbjct: 230 AIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFK 289
Query: 150 KGINRANSVSWNPHKMLGAPLQCSI 174
K I SVS + HK +G P+ C +
Sbjct: 290 KPI---GSVSVSGHKFVGCPMPCGV 311
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life.
Length = 294
Score = 47.6 bits (114), Expect = 5e-06
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 115 LDEIATVCEKYDLWMHVDACWGGSLIFSEKY---SFVLKGINRANSVSWNPHKMLGAPLQ 171
L +I L + VD G F + + S HK L A Q
Sbjct: 172 LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQST----HKTLPALTQ 227
Query: 172 CSILLIKEKGLLHQANATAATYL 194
S++ +K + A
Sbjct: 228 GSMIHVKGDLVNPDRVNEALNLH 250
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 44.7 bits (106), Expect = 2e-05
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 91 LAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK 150
L K + T TT G PL EI + ++Y + + VDA G + VL
Sbjct: 87 LKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPA---PGVLI 143
Query: 151 GINRANSVSWNPHKMLGAPLQCSILLIK 178
A+ V+++ HK LG ++++K
Sbjct: 144 PEGGADVVTFSLHKNLGGE-GGGVVIVK 170
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 41.8 bits (99), Expect = 5e-04
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 31 KRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQ-- 88
+ H+ TS H ++L +L V + + G + LE+ ++
Sbjct: 87 NAQKGKHI-----ITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPD 141
Query: 89 TSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDA 133
T L V+ G P+ EI +C++ + HVDA
Sbjct: 142 TIL--------VSIMHANNETGTIQPIAEIGEICKERGILFHVDA 178
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 40.4 bits (95), Expect = 0.001
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 27/146 (18%)
Query: 45 TSEDSHYSMLKAAHWLG--IGMDNVIRVKTNERGQMICSFLEQTI--QTSLAEKKIPLFV 100
S+ H+S + L G V + ++ G + LE+ I +T L V
Sbjct: 116 VSDLEHHSNIVPWQELAKRTGAK-VRVIPLDDDGLLDLDALEKLITPKTKL--------V 166
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLI---FSE-KYSFVLKGINRAN 156
+ + V G +P+ EIA + ++ + VDA + E F
Sbjct: 167 ALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDF--------- 217
Query: 157 SVSWNPHKMLGAPLQCSILLIKEKGL 182
++++ HK L P +L ++++ L
Sbjct: 218 -LAFSGHKWLLGPTGIGVLYVRKELL 242
>gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain.
Length = 417
Score = 37.0 bits (86), Expect = 0.018
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 82 FLEQTIQTSLAE---KKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGS 138
F E+TI+ +LAE K P T GT G EI ++ D+ W G
Sbjct: 151 FQEETIKEALAEVPPAKGPRLAVITNGT-YDGTIYNAKEIVDTLGHLSDYILFDSAWVGY 209
Query: 139 LIFSEKYSFVLK-GINRANS----VSWNPHKMLGAPLQCSILLIKEK 180
F Y+ G + N V+ + HK+L A Q S + K+
Sbjct: 210 EQFIPIYADASPMGGDNVNDPGIIVTQSVHKLLAAFSQASQIHKKDS 256
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 36.1 bits (84), Expect = 0.030
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 84 EQTIQTSLAEKKI---PLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDAC 134
+ EK + V T + V G +P++EI + +Y + VDA
Sbjct: 124 NGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAA 177
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase [DNA metabolism,
Restriction/modification].
Length = 353
Score = 35.5 bits (82), Expect = 0.044
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 31 KRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTS 90
++KG H+ TS H ++L+ L N V + +++ + +
Sbjct: 84 EQKGKKHI-----ITSAIEHPAVLEPIRAL---ERNGFTVTYLPVDESGRIDVDE-LADA 134
Query: 91 LAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLK 150
+ L V+ G+ P+ EIA V E ++ + HVDA I + L
Sbjct: 135 IRPDT--LLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD-----LS 187
Query: 151 GINRANSVSWNPHKMLGAPLQCSILLIKEKG 181
R + +S + HK + P L+I+++G
Sbjct: 188 AD-RIDLISCSGHK-IYGPKGIGALVIRKRG 216
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 32.6 bits (74), Expect = 0.40
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 50 HYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKK--IPLFVNATAGTT 107
S +KAA G + E +I ++T + EK + L V +T
Sbjct: 111 QKSSIKAAERAGFEP--RLVETVLEGDYLITD--VNDVETIIEEKGEEVILAVLSTTSCF 166
Query: 108 VLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY 145
+ D + EIA +C +YD+ V+ +G I SEKY
Sbjct: 167 APRSPDRVKEIAKICAEYDVPHLVNGAYG---IQSEKY 201
>gnl|CDD|221836 pfam12893, Lumazine_bd_2, Putative lumazine-binding. This is a
family of uncharacterized proteins. However, the family
belongs to the NTF2-like superfamily of various enzymes,
and some of the members of the family are putative
dehydrogenases.
Length = 115
Score = 31.1 bits (71), Expect = 0.42
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 397 PLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRG----AEVDLEM 440
PL+ + + V + PAS I I++ G A+V+L+M
Sbjct: 42 PLRRLPIEEYIARVKSRQPASPGAPRRRRILSIDVVGDIAMAKVELDM 89
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 31.7 bits (72), Expect = 0.86
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 110 GAFDPLDEIATVCEKYDLWMHVDAC 134
G PLDEI + +KYD + VD C
Sbjct: 184 GVIAPLDEICDLADKYDALVMVDEC 208
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 31.6 bits (72), Expect = 0.97
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 100 VNATAGTTVLGAFDPLDEIATVCEKY------DLWMHVDACWGGSLI-FSE---KYSFVL 149
V GTT G ++ + + ++Y D+ +HVDA GG + F ++ F L
Sbjct: 190 VVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRL 249
Query: 150 KGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
R S++ + HK ++ +++ L +
Sbjct: 250 P---RVKSINVSGHKYGLVYPGVGWVIWRDEEALPE 282
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 31.7 bits (72), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 100 VNATAGTTVLGAFDPLDEIATVCEKYDLWMHVD 132
VN AGTT DP+DEI + + W+ +D
Sbjct: 478 VNDLAGTTR----DPVDEIVEIDGED--WLFID 504
>gnl|CDD|237960 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH;
Provisional.
Length = 438
Score = 31.0 bits (71), Expect = 1.3
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 112 FDPLDEIATVCEKYDLWMHVDAC 134
FD L + C+K++LW+ D C
Sbjct: 173 FD-LAAVKAFCDKHNLWLIEDNC 194
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 31.1 bits (71), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 100 VNATAGTTVLGAFDPLDEIATVCEKYDLWMHVD 132
V+ AGTTV DP+D + + K W VD
Sbjct: 239 VDDVAGTTV----DPVDSLIELGGK--TWRFVD 265
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 30.8 bits (70), Expect = 1.5
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 103 TAGTTVLGAFDPLDEIATVCEKYDLWMHVDACW--GGSLIFSEKYSFVLKGINRANSVSW 160
+ + V G P++EI + ++ ++ +DA G I + + +++
Sbjct: 144 SHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTEL--------AIDMLAF 195
Query: 161 NPHKMLGAPLQCSILLIKEKGLLH 184
HK L P L I+E L
Sbjct: 196 TGHKGLLGPQGTGGLYIREGIKLK 219
>gnl|CDD|240785 cd12339, RRM2_SRSF1_4_like, RNA recognition motif 2 in
serine/arginine-rich splicing factor SRSF1, SRSF4 and
similar proteins. This subfamily corresponds to the
RRM2 of several serine/arginine (SR) proteins that have
been classified into two subgroups. The first subgroup
consists of serine/arginine-rich splicing factor 4
(SRSF4 or SRp75 or SFRS4), serine/arginine-rich splicing
factor 5 (SRSF5 or SRp40 or SFRS5 or HRS) and
serine/arginine-rich splicing factor 6 (SRSF6 or SRp55).
The second subgroup is composed of serine/arginine-rich
splicing factor 1 (SRSF1 or ASF-1), serine/arginine-rich
splicing factor 9 (SRSF9 or SRp30C) and plant
pre-mRNA-splicing factor SF2 (SR1). These SR proteins
are mainly involved in regulating constitutive and
alternative pre-mRNA splicing. They also have been
implicated in transcription, genomic stability, mRNA
export and translation. All SR proteins in this family,
except SRSF5, undergo nucleocytoplasmic shuttling,
suggesting their widespread roles in gene expression.
These SR proteins share a common domain architecture
comprising two N-terminal RNA recognition motifs (RRMs),
also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains), followed by a C-terminal RS
domains rich in serine-arginine dipeptides. Both domains
can directly contact with RNA. The RRMs appear to
determine the binding specificity and the SR domain also
mediates protein-protein interactions. In addition, this
subfamily includes the yeast nucleolar protein 3
(Npl3p), also termed mitochondrial targeting suppressor
1 protein, or nuclear polyadenylated RNA-binding protein
1. It is a major yeast RNA-binding protein that competes
with 3'-end processing factors, such as Rna15, for
binding to the nascent RNA, protecting the transcript
from premature termination and coordinating
transcription termination and the packaging of the fully
processed transcript for export. It specifically
recognizes a class of G/U-rich RNAs. Npl3p is a
multi-domain protein with two RRMs, separated by a short
linker and a C-terminal domain rich in glycine, arginine
and serine residues. .
Length = 71
Score = 28.0 bits (63), Expect = 1.8
Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 417 SSRQDMDYAIDQI---ELRGAEVDLE 439
+S++DM+ A+ ++ E RG V +E
Sbjct: 45 TSQEDMERALRKLDGTEFRGRRVRVE 70
>gnl|CDD|107325 cd06330, PBP1_Arsenic_SBP_like, Periplasmic solute-binding domain
of active transport proteins. Periplasmic
solute-binding domain of active transport proteins found
in bacteria and Archaea that is predicted to be involved
in the efflux of toxic compounds. Members of this
subgroup include proteins from Herminiimonas
arsenicoxydans, which is resistant to arsenic and
various heavy metals such as cadmium and zinc. Moreover,
they show significant sequence similarity to the cluster
of AmiC and active transport systems for short-chain
amides and urea (FmdDEF), and thus are likely to exhibit
a ligand-binding mode similar to that of the amide
sensor protein AmiC from Pseudomonas aeruginosa.
Length = 346
Score = 30.3 bits (69), Expect = 1.9
Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 18/85 (21%)
Query: 218 VDAFKLWL------------MWKARGNLGFRHFVDNAVDCSRGSMTFSTLLCFDLQGLLH 265
FK L W G + + A+ ++ FS+L DL +
Sbjct: 155 WADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEI-TALLAAKPDAIFSSLWGGDLVTFVR 213
Query: 266 QANATAATYLFQQDKFYDVSFDTGD 290
QANA LF V TG
Sbjct: 214 QANARG---LFDGTTV--VLTLTGA 233
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.1 bits (68), Expect = 2.5
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 86 TIQTSLAEKKIPLFVNATAGTTVLGAFDPL--DEI-ATVCEKYDLWMHVDACWGGS--LI 140
+ + + ++ G V+G + +E+ EK DLW H D GS +I
Sbjct: 430 KKRKKKEWFEKFRWFVSSDGFLVIGGRNAKQNEELVKKYAEKDDLWFHADD-IPGSHVVI 488
Query: 141 FSEK 144
+E
Sbjct: 489 KTEG 492
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 29.6 bits (67), Expect = 3.1
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 85 QTIQTSLAEKKIP-LFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSE 143
+ I +L + I + + T T G +PL+ I + +K+D + VDA S + E
Sbjct: 114 EEIAEALEQHDIKAVTL--THNETSTGVLNPLEGIGALAKKHDALLIVDAV---SSLGGE 168
Query: 144 KYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGL 182
+ G++ A + S K LGAP + E+ L
Sbjct: 169 PFRMDEWGVDVAYTGS---QKALGAPPGLGPIAFSERAL 204
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 29.4 bits (67), Expect = 3.7
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 114 PLDEIATVCEKYDLWMHVD 132
PL E+ + ++ W+ VD
Sbjct: 186 PLAELVALARRHGAWLLVD 204
>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase.
Members of this family are the enzyme 4-hydroxybenzoate
3-monooxygenase, also called p-hydroxybenzoate
hydroxylase. It converts 4-hydroxybenzoate + NADPH +
molecular oxygen to protocatechuate + NADPH + water. It
contains monooxygenase (pfam01360) and FAD binding
(pfam01494) domains. Pathways that contain this enzyme
include the protocatechuate 4,5-degradation pathway
[Energy metabolism, Other].
Length = 390
Score = 29.3 bits (66), Expect = 3.8
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 355 WFIPVSLRDKVE---DETWWSTLS-KVAPRIKEKLVLGGTLMIGYQPLQ 399
+++ V L DKVE D+ +W+ L ++ E+LV G ++ PL+
Sbjct: 221 YYVQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLR 269
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 29.0 bits (66), Expect = 4.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 114 PLDEIATVCEKYDLWMHVDAC 134
PL EI + +KYD + VD
Sbjct: 192 PLPEICDLADKYDALVMVDDS 212
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 28.7 bits (65), Expect = 5.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 110 GAFDPLDEIATVCEKYDLWMHVD 132
G PL E+ + +KY + VD
Sbjct: 146 GDIAPLPELVDLAKKYGAILFVD 168
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 28.8 bits (65), Expect = 6.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 114 PLDEIATVCEKYDLWMHVD 132
PL ++ + E+Y W+ VD
Sbjct: 164 PLPQLVALAERYGAWLMVD 182
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 28.7 bits (64), Expect = 6.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 76 GQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATV 121
G+ + L+ + + ++ VN T GT LG + D +A V
Sbjct: 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDPDTVAAV 249
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 28.8 bits (65), Expect = 7.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 86 TIQTSLAEKKIPLFVNATA 104
T T L+EKK P+FV ATA
Sbjct: 349 TFITWLSEKKSPVFVVATA 367
>gnl|CDD|211833 TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) selenium
transferase. In the archaea and eukaryotes, the
conversion of the mischarged serine to selenocysteine
(Sec) on its tRNA is accomplished in two steps. This
enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase,
acts second, after a phosphophorylation step catalyzed
by a homolog of the bacterial SelA protein [Protein
synthesis, tRNA aminoacylation].
Length = 444
Score = 28.5 bits (64), Expect = 7.7
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 17/103 (16%)
Query: 49 SHYSMLKAAHWLGIGM---DNVI---RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNA 102
S +KA G + V+ + T+ +E+ I+ + L V +
Sbjct: 160 DQKSCIKAISTAGFEPRVIETVLDGDELTTD------VEDIERAIEEIGPDN--ILCVLS 211
Query: 103 TAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY 145
T + D ++EIA +C YD+ V+ +G + S KY
Sbjct: 212 TTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYG---LQSNKY 251
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 28.4 bits (64), Expect = 7.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 110 GAFDPLDEIATVCEKYDLWMHVDACWG 136
G PL E+ + EKY ++VD
Sbjct: 185 GDIAPLPELVELAEKYGALLYVDEAHA 211
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 28.1 bits (63), Expect = 9.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 110 GAFDPLDEIATVCEKYDLWMHVDA 133
G P++EI +C + + H DA
Sbjct: 152 GVIQPVEEIGELCREKKVLFHTDA 175
>gnl|CDD|217928 pfam04148, Erv26, Transmembrane adaptor Erv26. Erv26 is an
integral membrane protein that is packed into COPII
vesicles and cycles between the ER and Golgi
compartments. It directs pro-alkaline phosphatase into
endoplasmic reticulum-derived COPII transport vesicles.
Length = 207
Score = 27.7 bits (62), Expect = 9.7
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 314 LGFRHFVDNAVDCS-RYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSL 361
L FRHF D + S R RP F V F +C W +P +L
Sbjct: 110 LWFRHFSDVEIPPSFRPDYVPQRNRPPFTEVASYF---GLCVWLVPFAL 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.437
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,483,190
Number of extensions: 2109421
Number of successful extensions: 1984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1954
Number of HSP's successfully gapped: 57
Length of query: 448
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 348
Effective length of database: 6,502,202
Effective search space: 2262766296
Effective search space used: 2262766296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)