RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14299
(448 letters)
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 350 bits (900), Expect = e-117
Identities = 137/241 (56%), Positives = 175/241 (72%)
Query: 7 LLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDN 66
PGG+ISNMYSI ARY+ P+ K KG++ +P L +FTSE SHYS+ KA LG G DN
Sbjct: 156 FSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDN 215
Query: 67 VIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD 126
VI +K NERG++I + E I + + +P +VNATAGTTV GAFDP+ EIA +CEKY+
Sbjct: 216 VILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 275
Query: 127 LWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQA 186
LW+HVDA WGG L+ S K+ L GI RANSV+WNPHKM+G LQCS +L+KEKG+L
Sbjct: 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGC 335
Query: 187 NATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCS 246
N A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++ ++ +
Sbjct: 336 NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA 395
Query: 247 R 247
Sbjct: 396 E 396
Score = 184 bits (468), Expect = 7e-53
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 4/176 (2%)
Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
G+L N A YLFQ DK YDVS+DTGDK++QCGR VD FK WLMWKA+G +GF + ++
Sbjct: 330 GILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQIN 389
Query: 322 NAVDCSRYFLSQISQRPGFRLVIP-EFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPR 380
++ + Y ++I R F +V E + TN+CFW+IP SLR + L KVAP+
Sbjct: 390 KCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPK 449
Query: 381 IKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
IK ++ GT M+GYQP + NFFR + +PA+++ D+D+ I++IE G ++
Sbjct: 450 IKALMMESGTTMVGYQPQGDK--ANFFR-MVISNPAATQSDIDFLIEEIERLGQDL 502
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 343 bits (882), Expect = e-114
Identities = 135/242 (55%), Positives = 181/242 (74%), Gaps = 1/242 (0%)
Query: 7 LLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDN 66
PGGSISNMY++ LARY+ PD K++GL LPPL +FTS++ HYS+ K A +LG+G D+
Sbjct: 170 FCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDS 229
Query: 67 VIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYD 126
V VK +ERG+M+ LE+ I + AE +P V+AT+GTTVLGAFDPL+ IA VC+++
Sbjct: 230 VRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHG 289
Query: 127 LWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG-LLHQ 185
LW+HVDA WGGS++ S+ + +L GI RA+SV+WNPHK+L A LQCS LL+++ LL +
Sbjct: 290 LWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKR 349
Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
+ + A+YLFQQDKFYDV+ DTGDK VQCGR+VD KLWLMWKA+G+ G +D A
Sbjct: 350 CHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVL 409
Query: 246 SR 247
+R
Sbjct: 410 AR 411
Score = 186 bits (473), Expect = 2e-53
Identities = 88/184 (47%), Positives = 122/184 (66%), Gaps = 4/184 (2%)
Query: 253 STLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARG 312
S LL D LL + + + A+YLFQQDKFYDV+ DTGDK VQCGR+VD KLWLMWKA+G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 313 NLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWS 372
+ G +D A +RY + ++ +R GF LV+ + N+CFWF+P SLR K E +
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREGFELVMEP-EFVNVCFWFVPPSLRGKQESPDYHE 454
Query: 373 TLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELR 432
LSKVAP +KE++V G++MIGYQP R NFFR+V + A + DMD+ ++++E
Sbjct: 455 RLSKVAPVLKERMVKEGSMMIGYQPHGTRG--NFFRVV-VANSALTCADMDFLLNELERL 511
Query: 433 GAEV 436
G ++
Sbjct: 512 GQDL 515
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 317 bits (815), Expect = e-104
Identities = 76/247 (30%), Positives = 123/247 (49%), Gaps = 11/247 (4%)
Query: 7 LLPGGSISNMYSICLARYRLDPDTKRKGLSH------LPPLCMFTSEDSHYSMLKAAHWL 60
GG+ SN + LAR + + L + S+ SH+++ K+A W+
Sbjct: 163 FTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM 222
Query: 61 GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIAT 120
G+G V+ V N G M + L++ I + AE IP + TAGTT GA D LD IA
Sbjct: 223 GLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIAD 282
Query: 121 VCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK 180
+ K+D+WMHVD +GG+LI S + LKG+ RA+S+S + HK+ + C LL+ +K
Sbjct: 283 MAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDK 341
Query: 181 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 240
+ A YL ++ +D + DKS+ ++ DA K+++ + G D
Sbjct: 342 SNF-KFLLHHADYL---NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYD 397
Query: 241 NAVDCSR 247
+ + +
Sbjct: 398 HLLAQTL 404
Score = 144 bits (365), Expect = 3e-38
Identities = 24/173 (13%), Positives = 61/173 (35%), Gaps = 19/173 (10%)
Query: 264 LHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNA 323
+ A YL ++ +D + DKS+ ++ DA K+++ + G D+
Sbjct: 343 NFKFLLHHADYL---NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHL 399
Query: 324 VDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKE 383
+ + I F L+ + + F + L ++ ++
Sbjct: 400 LAQTLEVADMIRTNDQFELLAEP-SLSTVLFRATH-----------ETADLDELNKALRL 447
Query: 384 KLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
+ + G ++G + + + T +P + D + + +I + E+
Sbjct: 448 EALTRGIAVLGETIVDGK---TALK-FTILNPCLTTSDFESLLSKINMLAVEL 496
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 270 bits (692), Expect = 5e-86
Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 10/246 (4%)
Query: 7 LLPGGSISNMYSICLARYRLDPDTKRKG-----LSHLPPLCMFTSEDSHYSMLKAAHWLG 61
L S S + ++ AR + K S L + S+ +H S+ KA
Sbjct: 150 LQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISL 209
Query: 62 IGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATV 121
+ + + ++ + L++ I+ +P+FV AT GTT + AFD L E+ +
Sbjct: 210 V---KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPI 266
Query: 122 CEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG 181
C + LW+H+DA + G+ ++ LKGI A+S ++NP K + C+ +K+K
Sbjct: 267 CAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKY 326
Query: 182 LLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN 241
L Q + YL + F + R+ + KLW + ++ G + V +
Sbjct: 327 KLQQTFSVNPIYLRHANSGVATDF--MHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRH 384
Query: 242 AVDCSR 247
+ ++
Sbjct: 385 GTEMAK 390
Score = 124 bits (312), Expect = 3e-31
Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 22/175 (12%)
Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
L Q + YL + F + R+ + KLW + ++ G + V
Sbjct: 326 YKLQQTFSVNPIYLRHANSGVATDF--MHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVR 383
Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI 381
+ + ++YF S + P F + + F + + +
Sbjct: 384 HGTEMAKYFESLVRNDPSFEIPAKR-HLGLVVFRLKG---------------PNSLTENV 427
Query: 382 KEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
+++ G L + +Q + R T ++R D+ + I +
Sbjct: 428 LKEIAKAGRLFLIPATIQDK---LIIRF-TVTSQFTTRDDILRDWNLIRDAATLI 478
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 268 bits (688), Expect = 2e-85
Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 8/247 (3%)
Query: 6 FLLPGGSISNMYSICLARYRLDPDTKRK-----GLSHLPPLCMFTSEDSHYSMLKAAHWL 60
+ S + + ++ AR ++ + + L L + S+ +H S+ +A
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG 202
Query: 61 GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIAT 120
G+ + + ++ + M S L++ ++ A IP FV AT GTT +FD L E+
Sbjct: 203 GV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGP 259
Query: 121 VCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK 180
+C + D+W+HVDA + GS ++ +L G+ A+S ++NPHK L CS + +K +
Sbjct: 260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR 319
Query: 181 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 240
L A YL + + D + GR+ + K+W +++ G G + ++
Sbjct: 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR 379
Query: 241 NAVDCSR 247
V S
Sbjct: 380 KHVQLSH 386
Score = 123 bits (310), Expect = 6e-31
Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 20/183 (10%)
Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
L A YL + + D + GR+ + K+W +++ G G + ++
Sbjct: 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR 379
Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI 381
V S F + + Q P F + +CF ++ +
Sbjct: 380 KHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNE---------------AL 423
Query: 382 KEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEVDLEMQ 441
E++ + + L+ + R C + A + I AE+ +
Sbjct: 424 LERINSARKIHLVPCRLRGQ---FVLRF-AICSRKVESGHVRLAWEHIRGLAAELLAAEE 479
Query: 442 AEA 444
+A
Sbjct: 480 GKA 482
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 266 bits (681), Expect = 2e-84
Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 11/248 (4%)
Query: 5 PFLLPGGSISNMYSICLARYRLDPDTKR-----KGLSHLPPLCMFTSEDSHYSMLKAAHW 59
+ S S + ++ A+ + + K + L L + S+ +H S+ +A
Sbjct: 142 GVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLL 201
Query: 60 LGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIA 119
G+ + +V +E +M + LE+ I+ +AE IP + T GTT AFD LDE
Sbjct: 202 GGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECG 257
Query: 120 TVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKE 179
V K++LW+HVDA + GS +Y ++KGI A+S ++NPHK + CS + +K+
Sbjct: 258 PVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKD 317
Query: 180 KGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFV 239
+ A YL + + D + GR+ A KLW + + G + +
Sbjct: 318 PSWVVNAFNVDPLYL--KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHI 375
Query: 240 DNAVDCSR 247
+ ++
Sbjct: 376 RRHCNFAK 383
Score = 121 bits (306), Expect = 2e-30
Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 22/175 (12%)
Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
+ A YL + + D + GR+ A KLW + + G + +
Sbjct: 319 SWVVNAFNVDPLYL--KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIR 376
Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI 381
+ ++ F F L +CF + R++ +
Sbjct: 377 RHCNFAKQFGDLCVADSRFELAAEI-NMGLVCFRLKGSNERNE---------------AL 420
Query: 382 KEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
+++ G + + ++ F R+ C + +DM+Y+ ++ E+
Sbjct: 421 LKRINGRGHIHLVPAKIKDV---YFLRM-AICSRFTQSEDMEYSWKEVSAAADEM 471
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 140 bits (355), Expect = 2e-37
Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 44/244 (18%)
Query: 8 LPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNV 67
+ G ++ CL+ R + + SH S +KA ++G+ M V
Sbjct: 157 ISTGMSISL---CLSAARKKYGSNV----------VIYPYASHKSPIKAVSFVGMNMRLV 203
Query: 68 IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDL 127
V +R + +E I+ + P V +T D + EIA +CE YD+
Sbjct: 204 ETVLDGDRVYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDI 262
Query: 128 WMHVDACWGGSLIFSEKYSFVLKGIN--RANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
++ + I + Y LK R ++V + K L P+ ++ + + +
Sbjct: 263 PHIINGAYA---IQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE 319
Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRK--VDAFKLWLMWKARGNLGFRHFVDNAV 243
+ + GR + + G+ + V N
Sbjct: 320 ISLSYP-----------------------GRASATPVVNTLVSLLSMGSKNYLELVKNQK 356
Query: 244 DCSR 247
+ +
Sbjct: 357 NSKK 360
Score = 34.3 bits (78), Expect = 0.081
Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 18/134 (13%)
Query: 301 AFKLWLMWKARGNLGFRHFVDNAVDCSRYF---LSQISQRPGFR-LVIPEFQCTNICFWF 356
+ + G+ + V N + + L+ +S++ G + L + + I
Sbjct: 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS 392
Query: 357 IPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPA 416
PV + K+ L PR +K G +G H+ +V
Sbjct: 393 DPVEIAAKLY------NLRVTGPRGIKKTDHFGNCYLGTYT------HD--YIVMNAAIG 438
Query: 417 SSRQDMDYAIDQIE 430
+D+ ++ ++E
Sbjct: 439 VRTEDIVNSVSKLE 452
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 139 bits (352), Expect = 3e-37
Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 10 GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
GG+ +N+ ++ + + + +RKGLS + +H+S K + + I
Sbjct: 94 GGTEANLMALRCIK-NIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLE---YIY 149
Query: 70 VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM 129
E + F++ ++ + + + AGTT LG D ++E++ + ++ ++++
Sbjct: 150 APIKEDYTIDEKFVKDAVE----DYDVDGII-GIAGTTELGTIDNIEELSKIAKENNIYI 204
Query: 130 HVDACWGGSLIFSEKYSFVLKGINR-------ANSVSWNPHKMLGAPLQCSILLIKEKGL 182
HVDA +GG +I + KG+N +S++ +PHKM P+ +L K+ G
Sbjct: 205 HVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGY 264
Query: 183 LHQANATAATYL 194
A YL
Sbjct: 265 KRYL-DVDAPYL 275
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 110 bits (276), Expect = 2e-26
Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 30/244 (12%)
Query: 10 GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
GG+ S + + + YR D KG++ +H + KAA + GI ++R
Sbjct: 168 GGTESLL--LAMKTYR-DWARATKGITAPE---AVVPVSAHAAFDKAAQYFGI---KLVR 218
Query: 70 VKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWM 129
+ + + + + I + V +A G DP+ EIA + ++ +
Sbjct: 219 TPLDADYRADVAAMREAI------TPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGC 272
Query: 130 HVDACWGGSLI-FSEKYSFVLK----GINRANSVSWNPHKMLGAPLQCSILLIKEKGLLH 184
HVDAC GG ++ ++E+ + + + SVS + HK S++L + LLH
Sbjct: 273 HVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLH 332
Query: 185 QANATAATYLFQQDKFYDVSFDTGDKSVQCGR-KVDAFKLWLMWKARGNLGFRHFVDNAV 243
AA + + R + W + G G+ +
Sbjct: 333 YQYFIAADWP---------GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRIL 383
Query: 244 DCSR 247
+
Sbjct: 384 QAAD 387
Score = 31.0 bits (70), Expect = 0.82
Identities = 4/43 (9%), Positives = 13/43 (30%)
Query: 303 KLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIP 345
W + G G+ + + + + P +++
Sbjct: 362 TAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGD 404
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 100 bits (250), Expect = 5e-23
Identities = 35/192 (18%), Positives = 76/192 (39%), Gaps = 22/192 (11%)
Query: 10 GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
GG+ S + + A+ +G++ + +H KAA++ G+ +
Sbjct: 134 GGTESLLLACLSAKMYA---LHHRGITEPE---IIAPVTAHAGFDKAAYYFGMKL---RH 184
Query: 70 VKTNE-RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLW 128
V+ + Q+ +++ I + + + +A G D ++ + + +KY L
Sbjct: 185 VELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLP 238
Query: 129 MHVDACWGGSLI-FSEKYSFVL-----KGINRANSVSWNPHKMLGAPLQCSILLIKEKGL 182
+HVD+C G ++ F EK + + S+S + HK AP S+++ + L
Sbjct: 239 LHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDL 298
Query: 183 LHQANATAATYL 194
+
Sbjct: 299 RMHQYYVNPAWT 310
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 100 bits (249), Expect = 6e-23
Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 24/196 (12%)
Query: 10 GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
G S + M + + + K +G P + T + K A + + +
Sbjct: 125 GSSEAIMLAGLAFKRKWQNKRKAEGKPVDKP-NIVTGANVQVCWEKFARYFEV---ELKE 180
Query: 70 VKTNE-RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY--- 125
VK +E M + + + V A G+T+ G F+ + + + +
Sbjct: 181 VKLSEGYYVMDPQQAVDMV------DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKE 234
Query: 126 ---DLWMHVDACWGGSLI----FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIK 178
D +HVDA GG + ++ F L + S++ + HK ++ +
Sbjct: 235 TGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLV---KSINVSGHKYGLVYAGIGWVIWR 291
Query: 179 EKGLLHQANATAATYL 194
K L + YL
Sbjct: 292 NKEDLPEELIFHINYL 307
Score = 31.6 bits (71), Expect = 0.64
Identities = 7/54 (12%), Positives = 19/54 (35%)
Query: 301 AFKLWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICF 354
+ G+ G+R+ ++N + + + F +V + + F
Sbjct: 325 VIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAF 378
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 99.3 bits (247), Expect = 9e-23
Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 19/193 (9%)
Query: 10 GGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIR 69
G S + M ++R + G P K A + + +
Sbjct: 111 GSSEACMLGGMAMKWRWRKRMEAAGKPTDKP--NLVCGPVQICWHKFARYWDV---ELRE 165
Query: 70 VKTNE-RGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEK---- 124
+ + M + + + + V T G T G ++ + +K
Sbjct: 166 IPMRPGQLFMDPKRMIEAC------DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQAD 219
Query: 125 --YDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG 181
D+ MH+DA GG L F + R S+S + HK APL C ++ +++
Sbjct: 220 TGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 279
Query: 182 LLHQANATAATYL 194
L Q YL
Sbjct: 280 ALPQELVFNVDYL 292
Score = 27.6 bits (61), Expect = 9.7
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 304 LWLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVI---PEFQCTNICF 354
+ + G G+ + + + Y +I++ + + P+ +CF
Sbjct: 313 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCF 366
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 62.7 bits (152), Expect = 7e-11
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 8/147 (5%)
Query: 46 SEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAG 105
S K+ G + V + + +E IQ E L +++T
Sbjct: 150 PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI--LCLHSTTA 207
Query: 106 TTVLGAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN---RANSVSWNP 162
D L+E+A +C YD+ V+ +G + S K +++ R ++ +
Sbjct: 208 CFAPRVPDRLEELAVICANYDIPHVVNNAYG---LQSSKCMHLIQQGARVGRIDAFVQSL 264
Query: 163 HKMLGAPLQCSILLIKEKGLLHQANAT 189
K P+ +I+ + + +
Sbjct: 265 DKNFMVPVGGAIIAGFNEPFIQDISKM 291
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 59.7 bits (144), Expect = 7e-10
Identities = 25/184 (13%), Positives = 60/184 (32%), Gaps = 12/184 (6%)
Query: 6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
F++P + ++ ++C R + + S K+ G
Sbjct: 138 FVVPMATGMSL-TLCFLTLRHKRPKAKY---------IIWPRIDQKSCFKSMITAGFEPV 187
Query: 66 NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
+ V + + +E +Q + L +++T D L+E+A +C Y
Sbjct: 188 VIENVLEGDELRTDLKAVEAKVQELGPDCI--LCIHSTTSCFAPRVPDRLEELAVICANY 245
Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
D+ V+ +G + R ++ + K P+ +I+ + +
Sbjct: 246 DIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE 305
Query: 186 ANAT 189
+
Sbjct: 306 ISKM 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 9e-06
Identities = 96/555 (17%), Positives = 169/555 (30%), Gaps = 194/555 (34%)
Query: 3 LKPFLLPGGSI-------SNMYSICLARYRLDPDTKRKGLSHLP-PLCMFTSEDSHYSML 54
+P L GS+ + + I +L + + LP P F ++D +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIAS---QL----QEQFNKILPEPTEGFAADDEPTTPA 58
Query: 55 K-AAHWLG----------IG-MDNVIRVKTNE------RGQMICSF---LEQTIQTSLAE 93
+ +LG +G D V+ + E G I + L Q T+L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 94 KKI----------------------PLFVNATAGTTVLGA-F-------DPLDEIATVCE 123
K LF G L A F D +E+ + +
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 124 KY-----DLWMHVDACWGGSLIFSEKYSFVL--KGINRANSVSW--NPHK------MLGA 168
Y DL + A LI + + + +G+ N + W NP +L
Sbjct: 179 TYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGL---NILEWLENPSNTPDKDYLLSI 234
Query: 169 PLQCSILLIKEKGLLHQAN--ATAATYLFQQDKFYDVSFDTGDKSVQCGRKV-------- 218
P+ S LI G++ A+ TA F + G + + +
Sbjct: 235 PI--SCPLI---GVIQLAHYVVTAKLLGFTPGELRSYL--KG--ATGHSQGLVTAVAIAE 285
Query: 219 ----DAFKL-------WLMWK-ARGNLGFRHF------VDNAVDCSRGSMTFSTLLCFDL 260
++F + L + R + + ++++++ + G + L +L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNL 344
Query: 261 -----QGLLHQANATAATYLFQQDKFYDVS-FDTGDKSVQCG--RKVDAFKLWLMWKARG 312
Q +++ N+ +L + +S + V G + + L L R
Sbjct: 345 TQEQVQDYVNKTNS----HLPAGKQVE-ISLVNGAKNLVVSGPPQSLYGLNLTL----R- 394
Query: 313 NLGFRHFVDNAVDCSRYFLSQ----ISQR--------------PGFRLVIPEFQCTNICF 354
+ + +D SR S+ S R P L+ + N+ F
Sbjct: 395 ----KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 355 WF----IPV-------SLRDKVEDET-------------WWSTLSKVAPRIKEKLVLG-- 388
IPV LR + W +T A I L G
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI---LDFGPG 507
Query: 389 GTLMIGYQPLQHRNL 403
G +G L HRN
Sbjct: 508 GASGLG--VLTHRNK 520
Score = 31.9 bits (72), Expect = 0.58
Identities = 39/231 (16%), Positives = 67/231 (29%), Gaps = 84/231 (36%)
Query: 57 AHWLGIGMD-----NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGA 111
+ G+GMD + N + + T S+ + + +N T+
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNR----ADNHFKDTYGFSILD----IVINNPVNLTIH-- 1675
Query: 112 FDPLD--EIATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGIN-RANSVSWN-PHKMLG 167
F I E Y M + G L + + K IN + S ++ +L
Sbjct: 1676 FGGEKGKRIR---ENYSA-MIFETIVDGKLKTEK----IFKEINEHSTSYTFRSEKGLLS 1727
Query: 168 AP--LQCSILL--------IKEKGLL--------H-----QANATAATYLFQQDKFYDVS 204
A Q ++ L +K KGL+ H A A+ A + S
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM---------S 1778
Query: 205 FDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVD-----CSRGSM 250
+ ++ + RG + AV S M
Sbjct: 1779 IE------------SLVEV-V--FYRGMT-----MQVAVPRDELGRSNYGM 1809
Score = 28.9 bits (64), Expect = 5.0
Identities = 26/173 (15%), Positives = 48/173 (27%), Gaps = 75/173 (43%)
Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
D+W D F + Y F + I N P+ +I EKG +
Sbjct: 1644 DVWNRADNH------FKDTYGFSILDIVINN------------PVNLTIHFGGEKGKRIR 1685
Query: 186 ANATAATY------------LFQQ--DKFYDVSFDTGDK----------------SVQCG 215
N +A + +F++ + +F +K
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQFTQPALTLMEK--- 1741
Query: 216 RKVDAFKLWLMWKARGN-----------LG-FRHFVDNAVDCSRGSMTFSTLL 256
A + K++G LG + A+ M+ +L+
Sbjct: 1742 ----A--AFEDLKSKGLIPADATFAGHSLGEY-----AALASLADVMSIESLV 1783
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 42.1 bits (99), Expect = 3e-04
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 115 LDEIATVCEKYDLWMHVDACWGGSLIFSEKY--SFVLKGINRANSVSWNPHKMLGAPLQC 172
++E+ + ++ + +D G + + S HK L A
Sbjct: 164 VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSF----HKTLPALTMG 219
Query: 173 SILLIKEKGLLHQ 185
S+L I + +
Sbjct: 220 SVLYIHKNAPYRE 232
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 41.6 bits (97), Expect = 4e-04
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 115 LDEIATVCEKYDLWMHVDACWGGSLIFSEKY---SFVLKGINRANS----VSWNPHKMLG 167
E + EK +H D W G F+ Y + N + + HK+L
Sbjct: 330 AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN 389
Query: 168 APLQCSILLIK 178
A Q S + ++
Sbjct: 390 ALSQASYIHVR 400
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 41.6 bits (97), Expect = 4e-04
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 81 SFLEQTIQTSLAEK---KIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDACWGG 137
F TI + E P+ T T ++ D I + + H D+ W
Sbjct: 279 EFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYN-TDFIKKTLDVKSI--HFDSAWVP 335
Query: 138 SLIFSEKY--SFVLKGINRANS---VSWNPHKMLGAPLQCSILLIKEK 180
FS Y + G + + HK+L A Q S++ +K
Sbjct: 336 YTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD 383
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 41.6 bits (97), Expect = 5e-04
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 110 GAFDPLDEIATVCEKYDLWMHVDACWGGSLIFSEKY--SFVLKGINR-----ANSVSWNP 162
G E+ ++ D+ W G F S L + V +
Sbjct: 294 GTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSV 353
Query: 163 HKMLGAPLQCSILLIKEKGLLHQA 186
HK Q S + K+ + Q
Sbjct: 354 HKQQAGFSQTSQIHKKDSHIKGQL 377
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 40.9 bits (96), Expect = 6e-04
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 22/143 (15%)
Query: 45 TSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATA 104
E+ HYS AA G+ + ++ + QTI ++ + T
Sbjct: 98 MDENCHYSSYVAAERAGLNIA-LVPKTDYPDYAITPENFAQTI-EETKKRGEVVLALITY 155
Query: 105 GTTVLGAFDPLDEIATVCEKYDLWMHVDACWG-GSLIFSEK------YSFVLKGINRANS 157
G + +IA VC +YD+ + V+ + G + S K S
Sbjct: 156 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVG---------S 206
Query: 158 VSWNPHKMLGAPLQCSILLIKEK 180
HK + A ++ +KE+
Sbjct: 207 G----HKSMAASGPIGVMGMKEE 225
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 38.6 bits (89), Expect = 0.003
Identities = 16/142 (11%), Positives = 39/142 (27%), Gaps = 18/142 (12%)
Query: 44 FTSEDSHYSMLKA-AHWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFV-- 100
FT+ H A + + + +G + L++ I + I
Sbjct: 123 FTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLI-DEKGAENIAYICLA 181
Query: 101 --NATAGTTVLGAFDPLDEIATVCEKYDLWMHVDAC------WGGSLIFSEKYSFVLKGI 152
AG + + + + + E + + + DA + + + I
Sbjct: 182 VTVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 153 NR-----ANSVSWNPHKMLGAP 169
A+ + + K
Sbjct: 241 VHEMFSYADGCTMSGKKDCLVN 262
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 38.2 bits (88), Expect = 0.005
Identities = 21/180 (11%), Positives = 53/180 (29%), Gaps = 19/180 (10%)
Query: 6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKA-AHWLGIGM 64
G + + + K K F + +H + A +
Sbjct: 95 IPAHQGRGAENILFPVLLKYKQKEGKAKN-PVFISNFHFDTTAAHVELNGCKAINIVTEK 153
Query: 65 DNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFV----NATAGTTVLGAFDPLDEIAT 120
+ +G L++ I A+ I V +AG + + L E+
Sbjct: 154 AFDSETYDDWKGDFDIKKLKENIAQHGADN-IVAIVSTVTCNSAGGQPV-SMSNLKEVYE 211
Query: 121 VCEKYDLWMHVDAC---WGGSLIFSEKYSFVLKGINR--------ANSVSWNPHKMLGAP 169
+ +++ +++ +D+ I + + I A++++ + K
Sbjct: 212 IAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN 271
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 33.7 bits (78), Expect = 0.10
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 114 PLDEIATVCEKYDLWMHVDAC 134
L + + +KYD + VD
Sbjct: 195 NLKGVCDLADKYDALVMVDDS 215
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 33.7 bits (78), Expect = 0.11
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 114 PLDEIATVCEKYDLWMHVDAC 134
L E+ ++ ++D + VD
Sbjct: 191 NLPELTSIANEFDAAVMVDDA 211
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 33.7 bits (78), Expect = 0.12
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 114 PLDEIATVCEKYDLWMHVDAC 134
L I + +KY+ + VD
Sbjct: 193 DLKSICDLADKYNALVMVDDS 213
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 33.3 bits (77), Expect = 0.17
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 114 PLDEIATVCEKYDLWMHVDAC 134
PL E+ V +K+ + VD
Sbjct: 212 PLKEMVAVAKKHGAMVLVDEA 232
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 32.9 bits (76), Expect = 0.19
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 114 PLDEIATVCEKYDLWMHVD 132
PL EI V ++++ W+ VD
Sbjct: 186 PLAEIQQVTQQHNGWLMVD 204
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 32.6 bits (75), Expect = 0.24
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 114 PLDEIATVCEKYDLWMHVD 132
PL E+ + +++ + VD
Sbjct: 204 PLAELVNISKEFGCALLVD 222
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 32.2 bits (74), Expect = 0.29
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 110 GAFDPLDEIATVCEKYDLWMHVDAC 134
G F P+ EI + E++ ++D
Sbjct: 192 GDFGPIKEICDIAEEFGALTYIDEV 216
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 32.3 bits (73), Expect = 0.37
Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 18/128 (14%)
Query: 75 RGQMICSFLEQTIQTSLAEKKIPLFV----NATAGTTVLGAFDPLDEIATVCEKYDLWMH 130
+G LE+ I+ +P V + +AG + + L + ++ +KYD+ +
Sbjct: 164 KGNFDLEGLERGIEEVGPNN-VPYIVATITSNSAGGQPV-SLANLKAMYSIAKKYDIPVV 221
Query: 131 VDA---CWGGSLIFSEKYSFVLKGINR--------ANSVSWNPHKMLGAPLQCSILLIKE 179
+D+ I + + I + A+ ++ + K P+ +L +K+
Sbjct: 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKD 280
Query: 180 KGLLHQAN 187
Sbjct: 281 DSFFDVYT 288
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 29.9 bits (68), Expect = 1.8
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVD 132
AT ++ D ++ I VC+ L +H+D
Sbjct: 149 QATEVGSIY-TLDEIEAIGDVCKSSSLGLHMD 179
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 28.9 bits (65), Expect = 3.1
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 87 IQTSLAEKKI--PLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVD 132
I T + E P+F+NA G ++ +A + + + V
Sbjct: 45 ISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVG 92
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 28.7 bits (65), Expect = 4.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 114 PLDEIATVCEKYDLWMHVDA 133
+ I +C + HVDA
Sbjct: 181 DIAAIGEMCRARGIIYHVDA 200
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna
unguiculata}
Length = 225
Score = 28.0 bits (62), Expect = 4.8
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 28/98 (28%)
Query: 192 TYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRGSMT 251
YLF+ +K+ K + + + + F +D
Sbjct: 130 VYLFKGNKYV--RIAYDSKQLVGNIR----NIGDGFPVLNGTEFESGIDACF-------- 175
Query: 252 FSTLLCFDLQGLLHQANATAATYLFQQDKFYDVSFDTG 289
++ YLF+ + + F G
Sbjct: 176 --------------ASHKEPEAYLFKGQNYVRIDFTPG 199
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 28.3 bits (64), Expect = 5.0
Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 53/156 (33%)
Query: 85 QTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY------------------- 125
+ + +L ++ + V G T G +P + I + ++
Sbjct: 114 EAVARALKRRRYRM-VALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSM 172
Query: 126 DLWMHVDACWGGS------------LIFSEK----------YSFVLKGINRANSVSWNPH 163
VD + GS + S + + L + H
Sbjct: 173 RAM-GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHH 231
Query: 164 ----KMLGAPLQCSILLIKEKGL-----LHQANATA 190
+ A L ++ L+ E+G+ +
Sbjct: 232 TTPVLLHYA-LLEALDLVLEEGVAARERRAREVYAW 266
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 27.6 bits (62), Expect = 7.9
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 101 NATAGTTVLGAFDPLDEIATVCEKYDLWMHVD 132
N T T L++I+ C+++ L++ +D
Sbjct: 153 NTTEVGTQY-TKQELEDISASCKEHGLYLFLD 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.437
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,815,348
Number of extensions: 390287
Number of successful extensions: 1074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 51
Length of query: 448
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 351
Effective length of database: 3,993,456
Effective search space: 1401703056
Effective search space used: 1401703056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.6 bits)