RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14299
(448 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 164 bits (417), Expect = 2e-46
Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 8/247 (3%)
Query: 6 FLLPGGSISNMYSICLARYRLDPDTKRKGLS-----HLPPLCMFTSEDSHYSMLKAAHWL 60
+ S + + ++ AR ++ + L L + S+ +H S+ +A
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG 202
Query: 61 GIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIAT 120
G+ + + ++ + M S L++ ++ A IP FV AT GTT +FD L E+
Sbjct: 203 GV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGP 259
Query: 121 VCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEK 180
+C + D+W+HVDA + GS ++ +L G+ A+S ++NPHK L CS + +K +
Sbjct: 260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR 319
Query: 181 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 240
L A YL + + D + GR+ + K+W +++ G G + ++
Sbjct: 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR 379
Query: 241 NAVDCSR 247
V S
Sbjct: 380 KHVQLSH 386
Score = 78.7 bits (193), Expect = 2e-16
Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 20/175 (11%)
Query: 262 GLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVD 321
L A YL + + D + GR+ + K+W +++ G G + ++
Sbjct: 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR 379
Query: 322 NAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDKVEDETWWSTLSKVAPRI 381
V S F + + Q P F + +CF ++ +
Sbjct: 380 KHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNE---------------AL 423
Query: 382 KEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDYAIDQIELRGAEV 436
E++ + + L+ + R C + A + I AE+
Sbjct: 424 LERINSARKIHLVPCRLRGQ---FVLRFA-ICSRKVESGHVRLAWEHIRGLAAEL 474
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 109 bits (273), Expect = 1e-26
Identities = 40/255 (15%), Positives = 73/255 (28%), Gaps = 28/255 (10%)
Query: 9 PGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVI 68
G S + M ++R + G P K A + + + +
Sbjct: 122 IGSSEACMLGGMAMKWRWRKRMEAAGKPTDKP--NLVCGPVQICWHKFARYWDVELREIP 179
Query: 69 RVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLD------EIATVC 122
+ M + + + + V T G T G ++ +
Sbjct: 180 --MRPGQLFMDPKRMIEAC------DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQAD 231
Query: 123 EKYDLWMHVDACWGGSLI-FSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKG 181
D+ MH+DA GG L F + R S+S + HK APL C ++ +++
Sbjct: 232 TGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 291
Query: 182 LLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDN 241
L Q YL G ++ R R G +
Sbjct: 292 ALPQELVFNVDYL---------GGQIGTFAINFSRPAGQVIAQYYEFLRL--GREGYTKV 340
Query: 242 AVDCSRGSMTFSTLL 256
+ + + +
Sbjct: 341 QNASYQVAAYLADEI 355
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 98.5 bits (244), Expect = 6e-23
Identities = 30/242 (12%), Positives = 68/242 (28%), Gaps = 33/242 (13%)
Query: 6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
F++P + ++ L P K + S K+ G
Sbjct: 116 FVVPMATGMSLTLCFLTLRHKRPKAKY----------IIWPRIDQKSCFKSMVTAGFEPV 165
Query: 66 NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
+ V + + +E IQ E + +++T D L+E+A +C Y
Sbjct: 166 VIENVLEGDELRTDLKAVEAKIQELGPEHIL--CLHSTTACFAPRVPDRLEELAVICANY 223
Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
D+ V+ +G + R ++ + K P+ +I+ + +
Sbjct: 224 DIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD 283
Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
+ + + + + G G+R + +
Sbjct: 284 ISKM---------------------YPGRASASPSLDVLITLLSLGCSGYRKLLKERKEM 322
Query: 246 SR 247
Sbjct: 323 FV 324
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 95.4 bits (236), Expect = 6e-22
Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 34/242 (14%)
Query: 6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
P + ++ A + + SH S +KA ++G+ M
Sbjct: 133 IATPISTGMSISLCLSAARKKYGSNV-----------VIYPYASHKSPIKAVSFVGMNMR 181
Query: 66 NVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKY 125
V V +R + +E I+ + P V +T D + EIA +CE Y
Sbjct: 182 LVETVLDGDRVYVPVEDIENAIKKEIELGNRP-CVLSTLTFFPPRNSDDIVEIAKICENY 240
Query: 126 DLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAPLQCSILLIKEKGLLHQ 185
D+ ++ + + + R ++V + K L P+ ++ + + +
Sbjct: 241 DIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE 299
Query: 186 ANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDC 245
+ + + + G+ + V N +
Sbjct: 300 ISLSYP---------------------GRASATPVVNTLVSLLSMGSKNYLELVKNQKNS 338
Query: 246 SR 247
+
Sbjct: 339 KK 340
Score = 48.8 bits (115), Expect = 8e-07
Identities = 19/141 (13%), Positives = 47/141 (33%), Gaps = 18/141 (12%)
Query: 294 QCGRKVDAFKLWLMWKARGNLGFRHFVDNAVDCSRYF---LSQISQRPGFRLV-IPEFQC 349
+ + G+ + V N + + L+ +S++ G + + +
Sbjct: 306 GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIA 365
Query: 350 TNICFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRL 409
+ I PV + K+ + L PR +K G +G H++ +
Sbjct: 366 SCISVNSDPVEIAAKLYN------LRVTGPRGIKKTDHFGNCYLGTYT------HDYIVM 413
Query: 410 VTTCHPASSRQDMDYAIDQIE 430
+D+ ++ ++E
Sbjct: 414 N--AAIGVRTEDIVNSVSKLE 432
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 37.1 bits (85), Expect = 0.004
Identities = 17/169 (10%), Positives = 46/169 (27%), Gaps = 14/169 (8%)
Query: 32 RKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMDNVIRVKTNERGQMICSFLEQTIQ--T 89
+ G + T+ + + + +G + + L I+
Sbjct: 112 KPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKG 171
Query: 90 SLAEKKIPLFVNATAGTTVLGAFDPLDEIATVCEKYDLWMHVDAC------WGGSLIFSE 143
+ I L V + + + + Y + + DA + +
Sbjct: 172 AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAG 231
Query: 144 KYSFVLKGINR-----ANSVSWNPHKMLGAPLQCSILLIKEKGLLHQAN 187
+ +K I A+ + + K + L + ++ + A
Sbjct: 232 YENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAK 279
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 35.7 bits (81), Expect = 0.011
Identities = 12/145 (8%), Positives = 38/145 (26%), Gaps = 4/145 (2%)
Query: 6 FLLPGGSISNMYSICLARYRLDPDTKRKGLSHLPPLCMFTSEDSHYSMLKAAHWLGIGMD 65
G + + + F + +H + +
Sbjct: 94 IPAHQGRGAENILFPVLLKYKQ-KEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 152
Query: 66 NV-IRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDP--LDEIATVC 122
+ +G L++ I A+ + + T + L E+ +
Sbjct: 153 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 212
Query: 123 EKYDLWMHVDACWGGSLIFSEKYSF 147
+++ +++ +D+ + K
Sbjct: 213 KQHGIFVVMDSARFCENAYFIKARD 237
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 35.7 bits (81), Expect = 0.011
Identities = 23/254 (9%), Positives = 71/254 (27%), Gaps = 29/254 (11%)
Query: 6 FLLPGGSISNMYSICLARYR-----LDPDTKRKGLSHLP-PLCMFTSEDSHYSMLKAAHW 59
G + I + + +K S+ S+ + ++
Sbjct: 93 IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIK 152
Query: 60 LGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDEIA 119
K N + + +E+ ++ + N+ G V + L +
Sbjct: 153 EAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPV--SLANLKAMY 210
Query: 120 TVCEKYDLWMHVDAC------WGGSLIFSEKYSFVLKGINR-----ANSVSWNPHKMLGA 168
++ +KYD+ + +D+ + +E + ++ I R A+ ++ + K
Sbjct: 211 SIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV 270
Query: 169 PLQCSILLIKEKGLLHQANATAATYLFQQDKFYDVSFDTGDKSVQCGRKVDAFKLWLMWK 228
P+ + + + ++ + + V + ++
Sbjct: 271 PMGGLLCM----------KDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320
Query: 229 ARGNLGFRHFVDNA 242
+ +
Sbjct: 321 GMNLDWLAYRIAQV 334
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 131
Score = 26.0 bits (57), Expect = 5.6
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 353 CFWFIP-----VSLRDKVEDETWWSTLSKVAPRIKEKLV 386
W I +K+ WW+ L P I K +
Sbjct: 69 SSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKI 107
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 279
Score = 26.6 bits (58), Expect = 6.1
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 353 CFWFIPVSLRDKVEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTT 412
WF PVS S K A K L G + + R++H+ ++
Sbjct: 150 SMWFAPVSEAR-------GSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYD 202
Query: 413 CHPASSRQDMDYAIDQI-----ELRGAE 435
+ D +++ + A
Sbjct: 203 RTNPEETKRADACFNELLDEFEKEGYAV 230
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 26.5 bits (57), Expect = 6.7
Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
Query: 58 HWLGIGMDNVIRVKTNERGQMICSFLEQTIQTSLAEKKIPLFVNATAGTTVLGAFDPLDE 117
+ N+I + + + E I A GA LD
Sbjct: 78 SMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDA 137
Query: 118 IATVCEKYDLWMHVDACWGGSLIFSEKYSFVLKGINRANSVSWNPHKMLGAP 169
I + E+Y + + DA Y G S++ K +
Sbjct: 138 IYALGERYGIPVIEDAAHA----TGTSYKGRHIGARGTAIFSFHAIKNITCA 185
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 26.4 bits (56), Expect = 7.2
Identities = 11/126 (8%), Positives = 31/126 (24%), Gaps = 27/126 (21%)
Query: 305 WLMWKARGNLGFRHFVDNAVDCSRYFLSQISQRPGFRLVIPEFQCTNICFWFIPVSLRDK 364
+ ++ + + L + G RL P +N F +
Sbjct: 240 GIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWP--SASNQLFPILE------ 291
Query: 365 VEDETWWSTLSKVAPRIKEKLVLGGTLMIGYQPLQHRNLHNFFRLVTTCHPASSRQDMDY 424
+ + + + + RL T A+ ++
Sbjct: 292 ----------NTMIAELNNDFDMYTVEPLKDG-------TCIMRLCT--SWATEEKECHR 332
Query: 425 AIDQIE 430
++ ++
Sbjct: 333 FVEVLK 338
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.137 0.437
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,688,839
Number of extensions: 75960
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 15
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)