BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14303
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PCI|A Chain A, Procaricain
 pdb|1PCI|B Chain B, Procaricain
 pdb|1PCI|C Chain C, Procaricain
          Length = 322

 Score = 30.0 bits (66), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 22  AACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP 81
            +C  CWAF+      T+E  + +I  G LV     + ++C R +        G +GG P
Sbjct: 126 GSCGSCWAFSAV---ATVEG-INKIRTGKLVELSEQELVDCERRSH-------GCKGGYP 174

Query: 82  PYGIDILTR 90
           PY ++ + +
Sbjct: 175 PYALEYVAK 183


>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
          With E-64
          Length = 216

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 21 DAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN 80
            +C  CWAF+      T+E  + +I  G LV     + ++C R +        G +GG 
Sbjct: 19 QGSCGSCWAFSAV---ATVEG-INKIRTGKLVELSEQELVDCERRSH-------GCKGGY 67

Query: 81 PPYGIDILTR 90
          PPY ++ + +
Sbjct: 68 PPYALEYVAK 77


>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
          Length = 216

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 21 DAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN 80
            +C  CWAF+      T+E  + +I  G LV     + ++C R +        G +GG 
Sbjct: 19 QGSCGSCWAFSAV---ATVEG-INKIRTGKLVELSEQELVDCERRSH-------GCKGGY 67

Query: 81 PPYGIDILTR 90
          PPY ++ + +
Sbjct: 68 PPYALEYVAK 77


>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
           Crocus Sativus At 1.3 A Resolution
          Length = 222

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 36/132 (27%)

Query: 22  AACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRA--------ASAAFQEL 73
            AC +CWAF        +E  +  I  G L+     + ++C           A  AF+ +
Sbjct: 20  GACGMCWAFGAT---GAIEG-IDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWV 75

Query: 74  VGRQG----GNPPY-GID--------ILTRAD-YFSVGNRQSAYLD------ISVYI--- 110
           +   G     N PY G+D        I  R D Y +V N  SA LD      +SV I   
Sbjct: 76  ITNGGIASDANYPYTGVDGTCDLNKPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIYTS 135

Query: 111 -AQFEAYTRPFI 121
              F+ YT P I
Sbjct: 136 STSFQLYTGPGI 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,022,931
Number of Sequences: 62578
Number of extensions: 196023
Number of successful extensions: 407
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)