BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14303
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI87|TBCD_CHICK Tubulin-specific chaperone D OS=Gallus gallus GN=TBCD PE=2 SV=1
Length = 1019
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
+KAL YDE +G CSVGS +RDAACY+ WAFARAYD L P + QI+ L++ +D+++
Sbjct: 448 LKALTYDEKRGSCSVGSNLRDAACYLSWAFARAYDPSELIPFINQISSALVIAAVFDRDV 507
Query: 61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
NCRRAASAAFQE VGRQ G P+GIDILT ADYF+VGNR + YL ISVYIA F YT+P
Sbjct: 508 NCRRAASAAFQENVGRQ-GTFPHGIDILTAADYFAVGNRVNCYLTISVYIAGFPEYTQPM 566
Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155
I HL+ K+ HWD IR+L+ K L L P EY
Sbjct: 567 IDHLVNMKINHWDSVIRELSTKALHNLTPRAPEYM 601
>sp|Q8BYA0|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculus GN=Tbcd PE=2 SV=1
Length = 1196
Score = 192 bits (488), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/159 (57%), Positives = 114/159 (71%), Gaps = 1/159 (0%)
Query: 1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
+KAL YDE +G CSVG+ +RDAACYVCWAFARAY+ L P V I+ L++ +D+ +
Sbjct: 447 LKALTYDEKRGACSVGANVRDAACYVCWAFARAYEPQELTPFVTAISSALVIAAVFDRNV 506
Query: 61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
NCRRAASAAFQE VGRQ G P+GIDILT ADYF+VGN + +L ISV+IA F+ YT+P
Sbjct: 507 NCRRAASAAFQENVGRQ-GTFPHGIDILTTADYFAVGNISNCFLIISVFIAGFQEYTKPM 565
Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
I HL++ K+ HWD IR+L+AK L L P EY V
Sbjct: 566 IDHLVSMKINHWDGAIRELSAKALHNLTPQVPEYIAMHV 604
>sp|Q9BTW9|TBCD_HUMAN Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=2
Length = 1192
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/159 (57%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
+KAL YDE +G CSVG+ +RDAACYVCWAFARAY+ L+P V I+ L++ +D++I
Sbjct: 445 LKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIAAVFDRDI 504
Query: 61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
NCRRAASAAFQE VGRQ G P+GIDILT ADYF+VGNR + +L ISV+IA F YT+P
Sbjct: 505 NCRRAASAAFQENVGRQ-GTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPM 563
Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
I HL+ K+ HWD IR+L A+ L L E+ T+V
Sbjct: 564 IDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSATQV 602
>sp|Q28205|TBCD_BOVIN Tubulin-specific chaperone D OS=Bos taurus GN=TBCD PE=1 SV=1
Length = 1199
Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/159 (57%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
++AL Y+E +G CSVGS +RDAACYVCWAFARAY+ L+P V I+ L++ T +D+++
Sbjct: 452 LRALTYEEKRGACSVGSNVRDAACYVCWAFARAYEPQELKPFVAAISSALVIATVFDRDV 511
Query: 61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
NCRRAASAAFQE VGRQ G P+GIDILT ADYF+VGNR + +L IS++IA F YT+P
Sbjct: 512 NCRRAASAAFQENVGRQ-GTFPHGIDILTTADYFAVGNRSNCFLVISMFIAGFPEYTQPM 570
Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
I+HL+ KV HWD IR+L+AK L L E+ EV
Sbjct: 571 IEHLVTMKVGHWDGTIRELSAKALRNLAQRAPEHTAREV 609
>sp|Q55G93|TBCD_DICDI Tubulin-specific chaperone D OS=Dictyostelium discoideum GN=tbcd
PE=3 SV=2
Length = 1480
Score = 155 bits (391), Expect = 1e-37, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
Query: 1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
++AL +D KG S+GS++RD+ACY+CWA AR Y + L P + I + L+VV+ YD+EI
Sbjct: 571 IRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREI 630
Query: 61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
NCR++ASAAFQE+VGR G P GI+I+T AD+F+VGN+ +++ ++ +I +F+ P
Sbjct: 631 NCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPI 690
Query: 121 -IQHLMARKVEHWDPEIRKLTAKTLPRLVPLD 151
I+HL K+ +WD EIR+L +K++ L ++
Sbjct: 691 VIKHLATIKIYNWDLEIRQLASKSIHLLTNIN 722
>sp|Q10197|ALP1_SCHPO Tubulin-folding cofactor D OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=alp1 PE=1 SV=3
Length = 1105
Score = 89.7 bits (221), Expect = 7e-18, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 3 ALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINC 62
L Y+ G G IRDA+CY W+F Y +E L + LL +D EIN
Sbjct: 413 GLSYEVRYGTRVTGQSIRDASCYFVWSFYHCYSKSAIEGLQTNLILCLLQTVLFDNEINV 472
Query: 63 RRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQ 122
RRAA+AA E++GR P G+ +++ +Y SV + + Y D+ + +A F + Q
Sbjct: 473 RRAATAALFEVIGRHASIPD-GLSLISHINYVSVTDISNCYGDLCMKVAHFPQFRSCVFQ 531
Query: 123 HLMARKVEHWDPEIRKLTAKTLPRL 147
L ++HWD ++++L+A +L +L
Sbjct: 532 RLFT-NLQHWDVKVQQLSAFSLRQL 555
>sp|P40987|CIN1_YEAST Chromosome instability protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CIN1 PE=1 SV=1
Length = 1014
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 16 GSYIRDAACYVCWAFARAYDHHTLEPLV-QQIAQGLLVVTCYDKEINCRRAASAAFQELV 74
G +IRD+ ++ W+ R+ ++L P V Q + LL+ +D E+ R ++ AA QEL+
Sbjct: 353 GHHIRDSTNFIIWSVIRSNRSNSLSPQVLQSLLSHLLINAFFDPELIIRYSSFAALQELL 412
Query: 75 GR 76
GR
Sbjct: 413 GR 414
>sp|P09032|EI2BG_YEAST Translation initiation factor eIF-2B subunit gamma OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GCD1 PE=1
SV=3
Length = 578
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 60 INCRRAASAAFQELVGR--QGGNP--PYGIDILTRADYFSVGNRQSAYLDISVYIAQFEA 115
INC ++ S F++L R Q P P GI IL F N +AY+D + ++ + ++
Sbjct: 354 INCNKSLSKVFRDLSRRSWQHSKPREPIGIFILPNETLFIRANNLNAYMDANRFVLKIKS 413
Query: 116 YT 117
T
Sbjct: 414 QT 415
>sp|P10056|PAPA3_CARPA Caricain OS=Carica papaya PE=1 SV=2
Length = 348
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 22 AACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP 81
+C CWAF+ T+E + +I G LV + ++C R + G +GG P
Sbjct: 152 GSCGSCWAFSAV---ATVEG-INKIRTGKLVELSEQELVDCERRSH-------GCKGGYP 200
Query: 82 PYGIDILTR 90
PY ++ + +
Sbjct: 201 PYALEYVAK 209
>sp|Q23270|TRM1_CAEEL tRNA (guanine(26)-N(2))-dimethyltransferase OS=Caenorhabditis
elegans GN=trm-1 PE=1 SV=1
Length = 526
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 39 LEPLVQQIA-QGLLVVTCYDKEINCRRAASAAFQE---LVGRQGGNPPYGIDILTRADYF 94
L+ VQ +A +G+L+VTC D + C A + + + R G+ IL RA
Sbjct: 180 LDSAVQCVADRGILMVTCTDMAVLCGNTPEACYNKYDAVTTRMKCCHEVGLRILLRA-ID 238
Query: 95 SVGNRQSAYLDISVYIAQFEAYTRPFIQ 122
S NR + Y++ V I+ + Y R F++
Sbjct: 239 SAANRYTRYIEPLVSIS-VDFYVRVFVR 265
>sp|B7Q5K1|QTRD1_IXOSC Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog OS=Ixodes
scapularis GN=ISCW021855 PE=3 SV=1
Length = 394
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 19 IRDAACYVCWAFARAYDHHTLE 40
+ ACY C F RAY HH L
Sbjct: 333 LESCACYACTNFTRAYIHHLLN 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,044,818
Number of Sequences: 539616
Number of extensions: 2368244
Number of successful extensions: 6651
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6635
Number of HSP's gapped (non-prelim): 14
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)