Query psy14303
Match_columns 161
No_of_seqs 114 out of 217
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 16:24:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1943|consensus 100.0 2.4E-56 5.2E-61 426.7 10.9 158 1-159 426-583 (1133)
2 COG5234 CIN1 Beta-tubulin fold 99.9 4.7E-28 1E-32 226.6 5.4 147 1-149 342-491 (993)
3 PF02985 HEAT: HEAT repeat; I 85.3 1 2.3E-05 25.9 2.6 23 128-150 8-30 (31)
4 KOG2171|consensus 84.3 3.2 6.9E-05 42.3 7.0 143 12-156 127-285 (1075)
5 PRK09687 putative lyase; Provi 84.1 2 4.4E-05 36.7 4.9 52 16-73 67-118 (280)
6 PF13513 HEAT_EZ: HEAT-like re 82.7 1.8 3.9E-05 27.3 3.1 50 19-72 3-54 (55)
7 PF12348 CLASP_N: CLASP N term 80.8 8.4 0.00018 30.7 7.1 135 18-156 68-213 (228)
8 PF12719 Cnd3: Nuclear condens 79.8 2.4 5.2E-05 36.1 3.8 42 119-160 26-67 (298)
9 PF02985 HEAT: HEAT repeat; I 76.6 4.7 0.0001 23.1 3.3 25 50-74 4-28 (31)
10 PF13251 DUF4042: Domain of un 74.0 9 0.00019 31.3 5.5 58 19-76 2-70 (182)
11 PF12755 Vac14_Fab1_bd: Vacuol 72.0 11 0.00023 27.6 5.0 44 114-158 22-65 (97)
12 PF01603 B56: Protein phosphat 70.2 5.8 0.00013 35.7 3.9 40 118-157 339-378 (409)
13 PLN00122 serine/threonine prot 69.5 4 8.6E-05 33.2 2.4 40 118-157 94-133 (170)
14 KOG1943|consensus 68.6 5.1 0.00011 41.0 3.4 46 113-159 335-380 (1133)
15 KOG1242|consensus 66.2 9.5 0.00021 36.5 4.6 142 12-158 225-412 (569)
16 PRK09687 putative lyase; Provi 65.9 30 0.00065 29.6 7.2 18 130-147 202-219 (280)
17 PF13513 HEAT_EZ: HEAT-like re 64.6 9.4 0.0002 23.9 3.0 32 115-147 24-55 (55)
18 PF12755 Vac14_Fab1_bd: Vacuol 63.6 12 0.00026 27.3 3.8 50 16-67 40-89 (97)
19 PF08623 TIP120: TATA-binding 61.8 34 0.00074 27.8 6.4 73 79-160 31-105 (169)
20 PF12717 Cnd1: non-SMC mitotic 59.7 18 0.0004 28.4 4.5 97 62-160 4-104 (178)
21 PF12717 Cnd1: non-SMC mitotic 53.9 14 0.00031 29.0 3.0 93 53-146 70-176 (178)
22 KOG1241|consensus 49.4 76 0.0016 31.9 7.6 136 19-159 380-540 (859)
23 COG5218 YCG1 Chromosome conden 49.3 26 0.00055 34.6 4.4 72 4-77 92-166 (885)
24 PF05918 API5: Apoptosis inhib 48.8 29 0.00062 33.2 4.6 53 106-159 46-98 (556)
25 cd00020 ARM Armadillo/beta-cat 48.4 23 0.00049 24.2 3.0 56 17-73 63-118 (120)
26 cd00020 ARM Armadillo/beta-cat 48.1 28 0.0006 23.8 3.4 57 17-74 21-77 (120)
27 PF14203 DUF4319: Domain of un 43.1 82 0.0018 21.8 5.0 40 116-156 17-57 (64)
28 PF08568 Kinetochor_Ybp2: Unch 42.7 63 0.0014 30.6 5.9 89 17-105 410-508 (633)
29 PRK13800 putative oxidoreducta 40.8 37 0.0008 33.6 4.2 28 48-75 654-681 (897)
30 PRK13800 putative oxidoreducta 39.4 1.2E+02 0.0026 30.1 7.4 27 47-73 622-648 (897)
31 PF01602 Adaptin_N: Adaptin N 38.0 66 0.0014 28.5 5.0 62 86-148 46-107 (526)
32 PF00514 Arm: Armadillo/beta-c 36.2 46 0.00099 19.7 2.7 27 121-148 14-40 (41)
33 smart00185 ARM Armadillo/beta- 36.1 55 0.0012 18.5 2.9 19 130-148 22-40 (41)
34 PF14663 RasGEF_N_2: Rapamycin 35.5 62 0.0014 24.1 3.8 36 41-76 3-38 (115)
35 COG1413 FOG: HEAT repeat [Ener 33.4 95 0.0021 26.1 5.0 114 16-151 87-211 (335)
36 PF14222 MOR2-PAG1_N: Cell mor 31.6 44 0.00095 31.7 2.9 34 118-152 470-503 (552)
37 PRK14625 hypothetical protein; 31.1 42 0.00092 25.4 2.3 51 35-86 55-105 (109)
38 PF03810 IBN_N: Importin-beta 30.7 86 0.0019 20.4 3.6 35 114-151 13-47 (77)
39 PF14136 DUF4303: Domain of un 30.2 46 0.001 25.3 2.4 52 62-113 1-52 (155)
40 PF14679 FANCI_HD1: FANCI heli 29.9 79 0.0017 23.0 3.5 46 26-77 28-73 (87)
41 PF14769 CLAMP: Flagellar C1a 28.9 1.3E+02 0.0028 21.7 4.5 59 26-87 4-63 (101)
42 KOG1543|consensus 27.7 28 0.00061 30.5 0.9 27 6-33 113-140 (325)
43 PF08161 NUC173: NUC173 domain 27.3 1.4E+02 0.0031 24.4 4.9 61 12-74 136-198 (198)
44 KOG1824|consensus 26.4 2.8E+02 0.006 29.1 7.5 44 112-156 925-968 (1233)
45 PF12612 TFCD_C: Tubulin foldi 24.5 3.5E+02 0.0077 21.4 6.7 105 42-149 4-116 (193)
46 KOG2025|consensus 22.9 4.2E+02 0.0091 26.9 7.9 70 3-75 85-155 (892)
47 KOG2160|consensus 22.1 83 0.0018 28.4 2.8 30 128-157 132-161 (342)
48 KOG0829|consensus 20.9 64 0.0014 26.4 1.7 33 69-103 102-134 (169)
49 KOG1842|consensus 20.8 76 0.0016 30.0 2.3 21 61-82 353-373 (505)
50 KOG3974|consensus 20.6 93 0.002 27.7 2.7 43 23-77 237-279 (306)
51 smart00580 PUG domain in prote 20.6 58 0.0013 21.7 1.2 14 66-79 22-35 (58)
52 PF10508 Proteasom_PSMB: Prote 20.5 1.6E+02 0.0035 27.1 4.5 28 126-153 83-110 (503)
No 1
>KOG1943|consensus
Probab=100.00 E-value=2.4e-56 Score=426.66 Aligned_cols=158 Identities=53% Similarity=0.925 Sum_probs=155.0
Q ss_pred CcceeeeeccCCCCCCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC
Q psy14303 1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN 80 (161)
Q Consensus 1 ~~~L~~d~~~g~~s~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~ 80 (161)
+|+|+||+++|.+|+|+||||||||+||||+|+|+|++++|+++.|+.+||++++|||||||||||+|||||+|||| |+
T Consensus 426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~-~n 504 (1133)
T KOG1943|consen 426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQ-GN 504 (1133)
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccC-CC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCccccceeechhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303 81 PPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159 (161)
Q Consensus 81 ~~~gi~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v 159 (161)
+||||+|++++|||+|++|.|||+.++..+|+|+.|++++++||+..|+.|||..+|+++|.||++|+...|+|+++.+
T Consensus 505 ~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~ 583 (1133)
T KOG1943|consen 505 FPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYV 583 (1133)
T ss_pred CCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998643
No 2
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=99.94 E-value=4.7e-28 Score=226.64 Aligned_cols=147 Identities=30% Similarity=0.571 Sum_probs=128.9
Q ss_pred CcceeeeeccCCCCCCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHH-HhhcCCchhhhhhHHHHHHHhccCCC
Q psy14303 1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVV-TCYDKEINCRRAASAAFQELVGRQGG 79 (161)
Q Consensus 1 ~~~L~~d~~~g~~s~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~-alFDrevniRRaAsAAlQE~vGR~~g 79 (161)
.|++.|+.+.|+.+.|.+|||||||++||+.|+|+.+..+. ++....+|++. ++||||+||||||.||+||++||+ .
T Consensus 342 ~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~-lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~-~ 419 (993)
T COG5234 342 EKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEG-LQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRH-A 419 (993)
T ss_pred ccccceeehheeeeccceeecccceeeeeeeeccccccchh-HHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccC-C
Confidence 37899999999999999999999999999999998765555 77655555555 999999999999999999999998 9
Q ss_pred CCCCccccceeechhhhhhhhhHHHHHHHHHhcCccchHH--HHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy14303 80 NPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRP--FIQHLMARKVEHWDPEIRKLTAKTLPRLVP 149 (161)
Q Consensus 80 ~~~~gi~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~--li~~L~~~~l~hwD~~iR~Laa~al~~L~~ 149 (161)
..|.|.+++.+.+|.+|...++|+-.+...++.++..+.- +++-.+-.++.|||+++..+++.+|.+|.+
T Consensus 420 s~a~g~~lIslIN~~sv~r~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK 491 (993)
T COG5234 420 SIADGLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIK 491 (993)
T ss_pred CcccchhhhhhccceecchhhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhc
Confidence 9999999999999999999999999999999988865533 444334458999999999999999999953
No 3
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.29 E-value=1 Score=25.90 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhccc
Q psy14303 128 KVEHWDPEIRKLTAKTLPRLVPL 150 (161)
Q Consensus 128 ~l~hwD~~iR~Laa~al~~L~~~ 150 (161)
.+.+-|+++|+-|+++|+.+++.
T Consensus 8 ~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 8 LLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999864
No 4
>KOG2171|consensus
Probab=84.26 E-value=3.2 Score=42.29 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=97.5
Q ss_pred CCCCCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHH----------HHhccCCCCC
Q psy14303 12 FCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQ----------ELVGRQGGNP 81 (161)
Q Consensus 12 ~~s~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQ----------E~vGR~~g~~ 81 (161)
.+|.-.+.|-+|=+|+|++...+.. .++||+.. +..|+..++=|++..||=+|--|+= +.+-++...+
T Consensus 127 ~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~-l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~ll 204 (1075)
T KOG2171|consen 127 TKSPNPSLRESALLILSSLPETFGN-TLQPHLDD-LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLL 204 (1075)
T ss_pred hcCCCcchhHHHHHHHHhhhhhhcc-ccchhHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 4566678999999999999999975 57777754 4677888899999999977665542 1222332245
Q ss_pred CCccccce-eechhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCC-----CCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 82 PYGIDILT-RADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKV-----EHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 82 ~~gi~il~-~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l-----~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
|..+.+++ ..+.-...+-+.++..+...+...+.+..+.+.-++...+ ..-|..+|.+|-+-|--++...|.-+
T Consensus 205 P~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~ 284 (1075)
T KOG2171|consen 205 PSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMC 284 (1075)
T ss_pred HHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHh
Confidence 65554433 3333333334555555555566677777777777776443 78899999999998888777666544
Q ss_pred H
Q psy14303 156 L 156 (161)
Q Consensus 156 ~ 156 (161)
+
T Consensus 285 k 285 (1075)
T KOG2171|consen 285 K 285 (1075)
T ss_pred h
Confidence 3
No 5
>PRK09687 putative lyase; Provisional
Probab=84.09 E-value=2 Score=36.72 Aligned_cols=52 Identities=17% Similarity=0.030 Sum_probs=26.2
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHH
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQEL 73 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~ 73 (161)
...||-++..++.-+.....+ ....+..|....+-|++-.+|++|..||-++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHR 118 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 345666666555555443211 1122333333345666666776666666443
No 6
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=82.73 E-value=1.8 Score=27.31 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=35.1
Q ss_pred hhchhhHHHHHHhhcc--CccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHH
Q psy14303 19 IRDAACYVCWAFARAY--DHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQE 72 (161)
Q Consensus 19 VRDAacf~~WslaR~y--~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE 72 (161)
||.+| +|+|++-- .++.+++++..+...|+ ..+=|.+-.+|.+|.-||-.
T Consensus 3 vR~~A---~~aLg~l~~~~~~~~~~~~~~~~~~L~-~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAA---AWALGRLAEGCPELLQPYLPELLPALI-PLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHH---HHHHHCTTTTTHHHHHHHHHHHHHHHH-HHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHH---HHHHhhHhcccHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHhc
Confidence 66666 56777532 23467788888888777 44466777999999988854
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.82 E-value=8.4 Score=30.65 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=79.0
Q ss_pred hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCcc--c-cceeechh
Q psy14303 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGI--D-ILTRADYF 94 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi--~-il~~~Dy~ 94 (161)
.|-=.||-++=.+++..... ++|+++.++..|+.. +=|..-.||.+|..++..++-.. + ++..+ . +.....--
T Consensus 68 ~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~-~~~~~~~i~~~a~~~L~~i~~~~-~-~~~~~~~~~l~~~~~~K 143 (228)
T PF12348_consen 68 KVSKTACQLLSDLARQLGSH-FEPYADILLPPLLKK-LGDSKKFIREAANNALDAIIESC-S-YSPKILLEILSQGLKSK 143 (228)
T ss_dssp -HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHG-GG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHC-C-cHHHHHHHHHHHHHhCC
Confidence 34446787777888887664 889988888766554 44566689999999999999877 3 11111 1 11111222
Q ss_pred hhhhhhhHHHHHHHHHhcCc---c---chH--HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 95 SVGNRQSAYLDISVYIAQFE---A---YTR--PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 95 sv~~r~~a~l~~~~~va~~~---~---Y~~--~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
+...|..+..-+...+..++ . ... .-+.-.+...+.+-|+++|+.|-+++..+....|+-..
T Consensus 144 n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 144 NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp -HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 34445555444444444444 1 111 12333445577999999999999999999888777643
No 8
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.76 E-value=2.4 Score=36.05 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhhC
Q psy14303 119 PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVG 160 (161)
Q Consensus 119 ~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v~ 160 (161)
.+++.|+.-.+.|.|+.+|++|-++||..+-.+++...+.++
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~ 67 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLP 67 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 799999999999999999999999999999999987776543
No 9
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.59 E-value=4.7 Score=23.06 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.1
Q ss_pred HHHHHhhcCCchhhhhhHHHHHHHh
Q psy14303 50 LLVVTCYDKEINCRRAASAAFQELV 74 (161)
Q Consensus 50 Ll~~alFDrevniRRaAsAAlQE~v 74 (161)
.+...+-|++-.+|.+|.-+|.++.
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4556778999999999999998864
No 10
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=73.97 E-value=9 Score=31.28 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=45.3
Q ss_pred hhchhhHHHHHHhhccCccccHHHHHHHH-----------HHHHHHHhhcCCchhhhhhHHHHHHHhcc
Q psy14303 19 IRDAACYVCWAFARAYDHHTLEPLVQQIA-----------QGLLVVTCYDKEINCRRAASAAFQELVGR 76 (161)
Q Consensus 19 VRDAacf~~WslaR~y~~~~l~~~~~~l~-----------~~Ll~~alFDrevniRRaAsAAlQE~vGR 76 (161)
||=+|...+=++++.-++..+-.+-..++ ..|+.+.++|++.-||=+|.+++..++-.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 67778888888888876766666555444 35789999999999999999999877643
No 11
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=71.99 E-value=11 Score=27.61 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=36.0
Q ss_pred ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhh
Q psy14303 114 EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTE 158 (161)
Q Consensus 114 ~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~ 158 (161)
++|.+.+++-++ ..+..-|..+|..|.+||.++++..+..+...
T Consensus 22 ~~~l~~Il~pVL-~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~ 65 (97)
T PF12755_consen 22 SKYLDEILPPVL-KCFDDQDSRVRYYACEALYNISKVARGEILPY 65 (97)
T ss_pred HHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777887666 47899999999999999999998877776543
No 12
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=70.22 E-value=5.8 Score=35.73 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHh
Q psy14303 118 RPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLT 157 (161)
Q Consensus 118 ~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~ 157 (161)
+.++..|.+..-.||+..+|.+|..++..|...||+.+.+
T Consensus 339 p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 339 PIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3455555555559999999999999999999999997643
No 13
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=69.52 E-value=4 Score=33.22 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=33.4
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHh
Q psy14303 118 RPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLT 157 (161)
Q Consensus 118 ~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~ 157 (161)
+.++..|.+..-.||+..|+.|+..++..+...||+.+.+
T Consensus 94 PIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~e 133 (170)
T PLN00122 94 PIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEE 133 (170)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4455566666669999999999999999999999988765
No 14
>KOG1943|consensus
Probab=68.59 E-value=5.1 Score=40.96 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=40.6
Q ss_pred CccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303 113 FEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159 (161)
Q Consensus 113 ~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v 159 (161)
-+++-+.+++||+. ++.+-|..+|+=||+.+++++...|-..++.|
T Consensus 335 v~eivE~vie~Lls-~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~v 380 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLS-ALSDTDTVVRWSAAKGLGRVTSRLPPELADQV 380 (1133)
T ss_pred cHHHHHHHHHHHHH-hccCCcchhhHHHHHHHHHHHccCcHHHHHHH
Confidence 34788899999987 89999999999999999999999998777654
No 15
>KOG1242|consensus
Probab=66.22 E-value=9.5 Score=36.52 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCCCCchhhchhhHHHHHHhhccCccccHHHH---------------------------------HHHHHHH---HHHHh
Q psy14303 12 FCSVGSYIRDAACYVCWAFARAYDHHTLEPLV---------------------------------QQIAQGL---LVVTC 55 (161)
Q Consensus 12 ~~s~G~~VRDAacf~~WslaR~y~~~~l~~~~---------------------------------~~l~~~L---l~~al 55 (161)
-++.+.-||+||-...=|+.|+.++...+.++ ...+.++ +.-.+
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH
Confidence 34667889999999999999999886554321 1122222 34567
Q ss_pred hcCCchhhhhhHHHHHHHhccCCCCCCCccccce----eechhhhhh-hh-hHH--HHHHHHHhcCccchHHHHHHHhhC
Q psy14303 56 YDKEINCRRAASAAFQELVGRQGGNPPYGIDILT----RADYFSVGN-RQ-SAY--LDISVYIAQFEAYTRPFIQHLMAR 127 (161)
Q Consensus 56 FDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~----~~Dy~sv~~-r~-~a~--l~~~~~va~~~~Y~~~li~~L~~~ 127 (161)
-|...-+|+|+..+++ +. |.+..+-+|.. +.|=++=.. +. .|- +-.+.+|+.-.+=.-.++..++.+
T Consensus 305 ~DT~~evr~a~~~~l~----~~-~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R 379 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLL----KF-GSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKR 379 (569)
T ss_pred ccCCHHHHHHHHHHHH----HH-HHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHH
Confidence 8888889998865555 44 54433333333 112111111 11 111 111223444445567799999999
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccC--hHHHHhh
Q psy14303 128 KVEHWDPEIRKLTAKTLPRLVPLD--REYFLTE 158 (161)
Q Consensus 128 ~l~hwD~~iR~Laa~al~~L~~~~--p~~~~~~ 158 (161)
++..=+..+++.+++.+.+++..- |..+..-
T Consensus 380 ~l~eRst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 380 GLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred HHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence 999999999999999999999764 6665543
No 16
>PRK09687 putative lyase; Provisional
Probab=65.87 E-value=30 Score=29.56 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHhhh
Q psy14303 130 EHWDPEIRKLTAKTLPRL 147 (161)
Q Consensus 130 ~hwD~~iR~Laa~al~~L 147 (161)
.++|..+|.-|+.+|+++
T Consensus 202 ~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALR 219 (280)
T ss_pred cCCChHHHHHHHHHHHcc
Confidence 566666666666666664
No 17
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=64.56 E-value=9.4 Score=23.93 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=23.7
Q ss_pred cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhh
Q psy14303 115 AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRL 147 (161)
Q Consensus 115 ~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L 147 (161)
.|.+.++..|+. .+.+-+..+|.-|+.||++|
T Consensus 24 ~~~~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 24 PYLPELLPALIP-LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence 355556666664 45777889999999999976
No 18
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=63.58 E-value=12 Score=27.30 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=41.2
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhH
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAAS 67 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAs 67 (161)
-..||=+||--+.-+++....+ +.++..+||..|.. .+-|++-++|-+|.
T Consensus 40 d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~k-l~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 40 DSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCK-LSADPDENVRSAAE 89 (97)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHcCCchhHHHHHH
Confidence 4569999999999999998764 55688888877655 67899999999984
No 19
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=61.75 E-value=34 Score=27.75 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=51.2
Q ss_pred CCCCCccccceeechhhhhhhhhHHHHHHHHHhcC--ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 79 GNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQF--EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 79 g~~~~gi~il~~~Dy~sv~~r~~a~l~~~~~va~~--~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
|.|-|-+| --+-.|+.||.-+-..+... .-=...+++++ ..|+.. +..||.|+-.-|.+|+...|..+.
T Consensus 31 GPFKh~vD-------DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v-~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~ 101 (169)
T PF08623_consen 31 GPFKHKVD-------DGLELRKAAYECLYTLLDTCLSRIDISEFLDRV-EAGLKD-EHDIKMLCHLMLSKLAQLAPEEVL 101 (169)
T ss_dssp TTCEEEEE-------GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHH-HHTTSS--HHHHHHHHHHHHHHHHS-HHHHH
T ss_pred CCceeeec-------CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HhhcCC-cHHHHHHHHHHHHHHHHhCHHHHH
Confidence 66666554 36778999997777665532 21123456664 448888 999999999999999999999988
Q ss_pred hhhC
Q psy14303 157 TEVG 160 (161)
Q Consensus 157 ~~v~ 160 (161)
..+.
T Consensus 102 ~~Ld 105 (169)
T PF08623_consen 102 QRLD 105 (169)
T ss_dssp HCCT
T ss_pred HHHH
Confidence 7653
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=59.75 E-value=18 Score=28.37 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=62.5
Q ss_pred hhhhhHHHHHHHhccCCCCCCCccc-cce-eechhhhhhhhhHHHHHHHHH-hcCccchHHHHHHHhhCCCCCCCHHHHH
Q psy14303 62 CRRAASAAFQELVGRQGGNPPYGID-ILT-RADYFSVGNRQSAYLDISVYI-AQFEAYTRPFIQHLMARKVEHWDPEIRK 138 (161)
Q Consensus 62 iRRaAsAAlQE~vGR~~g~~~~gi~-il~-~~Dy~sv~~r~~a~l~~~~~v-a~~~~Y~~~li~~L~~~~l~hwD~~iR~ 138 (161)
+|--+-.++=-+.=|+|+.+..-++ +.. +.|= ....|++|...++.-+ ..+-.....++..++. .+..-|++||.
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~-~l~D~~~~Ir~ 81 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVKGQLFSRILK-LLVDENPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH-HHcCCCHHHHH
Confidence 4555555555555566332211111 111 3333 5677888888888765 4566777777666654 56888999999
Q ss_pred HHHHHHhhhccc-ChHHHHhhhC
Q psy14303 139 LTAKTLPRLVPL-DREYFLTEVG 160 (161)
Q Consensus 139 Laa~al~~L~~~-~p~~~~~~v~ 160 (161)
+|...+..+... +|+-+...++
T Consensus 82 ~A~~~~~e~~~~~~~~~i~~~~~ 104 (178)
T PF12717_consen 82 LARSFFSELLKKRNPNIIYNNFP 104 (178)
T ss_pred HHHHHHHHHHHhccchHHHHHHH
Confidence 999999998887 8887776654
No 21
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=53.94 E-value=14 Score=28.99 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=52.0
Q ss_pred HHhhcCCchhhhhhHHHHHHHhcc-CCCCCCCcc-ccce-eechh--------hhhhhhhHHHHHHHHHhcCccchHHHH
Q psy14303 53 VTCYDKEINCRRAASAAFQELVGR-QGGNPPYGI-DILT-RADYF--------SVGNRQSAYLDISVYIAQFEAYTRPFI 121 (161)
Q Consensus 53 ~alFDrevniRRaAsAAlQE~vGR-~~g~~~~gi-~il~-~~Dy~--------sv~~r~~a~l~~~~~va~~~~Y~~~li 121 (161)
.++-|++-.||..|...|+|+..+ .|..+.+.+ +++. +.++. .-..++..|.-+-..+.+ ++-...++
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~ 148 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLV 148 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHH
Confidence 355899999999999999999988 433332222 3333 22221 112233444333334433 34555666
Q ss_pred HHHhhCCCCCC---CHHHHHHHHHHHhh
Q psy14303 122 QHLMARKVEHW---DPEIRKLTAKTLPR 146 (161)
Q Consensus 122 ~~L~~~~l~hw---D~~iR~Laa~al~~ 146 (161)
+.|..+=+..+ +..+-+-++.+|..
T Consensus 149 ~kl~~~~~~~~~~~~~~~~~d~~~~l~~ 176 (178)
T PF12717_consen 149 EKLCQRFLNAVVDEDERVLRDILYCLSC 176 (178)
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHC
Confidence 66666555555 66655555555543
No 22
>KOG1241|consensus
Probab=49.36 E-value=76 Score=31.90 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=86.9
Q ss_pred hhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCcc-------ccce--
Q psy14303 19 IRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGI-------DILT-- 89 (161)
Q Consensus 19 VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi-------~il~-- 89 (161)
=||||-+..=|+--..++..++|.+.+....++..-. |+.+++|+++.=. +||.-...|.-+ .+++
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwt----lgrI~d~l~e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWT----LGRIADFLPEAIINQELLQSKLSAL 454 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHH----HHHHHhhchhhcccHhhhhHHHHHH
Confidence 4788888888887777777899999998888887777 9999999776544 477632223211 0111
Q ss_pred ---eec-hhhhhhhhhHHHHHH-------HHHh---cCccchHHHHHHHhh-CCC-CCCCHHHHHHHHHHHhhhcccChH
Q psy14303 90 ---RAD-YFSVGNRQSAYLDIS-------VYIA---QFEAYTRPFIQHLMA-RKV-EHWDPEIRKLTAKTLPRLVPLDRE 153 (161)
Q Consensus 90 ---~~D-y~sv~~r~~a~l~~~-------~~va---~~~~Y~~~li~~L~~-~~l-~hwD~~iR~Laa~al~~L~~~~p~ 153 (161)
+.| =+-.+|-.-++..++ +... -+..|.+.+++-|+. ... ..-+-+.|.-+=+||..|.+.-|+
T Consensus 455 ~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 455 LEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 111 001122222222222 1111 122477889999987 222 446788999999999999999999
Q ss_pred HHHhhh
Q psy14303 154 YFLTEV 159 (161)
Q Consensus 154 ~~~~~v 159 (161)
++...|
T Consensus 535 ~vy~~v 540 (859)
T KOG1241|consen 535 DVYPMV 540 (859)
T ss_pred HHHHHH
Confidence 987654
No 23
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=49.29 E-value=26 Score=34.59 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=48.9
Q ss_pred eeeeeccCCCCCCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHH---HHHHhccC
Q psy14303 4 LVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAA---FQELVGRQ 77 (161)
Q Consensus 4 L~~d~~~g~~s~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAA---lQE~vGR~ 77 (161)
.+|.+.||..|.-.+||=-+|=++=-+.-+-. .+-..+-+....=+..-+||||-.+||-|--+ +||+-|--
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~--eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVR--EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 45677899999999999887776543333322 12223334444445677999999999998776 58877754
No 24
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=48.78 E-value=29 Score=33.22 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=36.5
Q ss_pred HHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303 106 ISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159 (161)
Q Consensus 106 ~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v 159 (161)
|..+...||+..+.-|+.+++- ...-|..||.-|.+.|..+|+-+|+++...+
T Consensus 46 I~kffk~FP~l~~~Ai~a~~DL-cEDed~~iR~~aik~lp~~ck~~~~~v~kva 98 (556)
T PF05918_consen 46 IPKFFKHFPDLQEEAINAQLDL-CEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA 98 (556)
T ss_dssp HHHHHCC-GGGHHHHHHHHHHH-HT-SSHHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred HHHHHhhChhhHHHHHHHHHHH-HhcccHHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence 3444556888888888888872 2788999999999999999999998886543
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=48.37 E-value=23 Score=24.21 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=37.4
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHH
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQEL 73 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~ 73 (161)
..|+..|+..++.+++...+ ..+.+.+.=+...+...+-|.+..+|+.|..+|-.+
T Consensus 63 ~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 63 EEVVKAALWALRNLAAGPED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHHHHHHHHccCcHH-HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 57899999999999886532 222233332344444455666889999999888644
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=48.11 E-value=28 Score=23.77 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=39.8
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHh
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELV 74 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~v 74 (161)
..+|-.++..+|.++...+ +..+.+++.-....+...+-|.+-.+|+.|..++-.+.
T Consensus 21 ~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 21 ENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 5789999999999998743 23334444233333444566788899999999998774
No 27
>PF14203 DUF4319: Domain of unknown function (DUF4319); PDB: 2L7K_A.
Probab=43.09 E-value=82 Score=21.78 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=27.6
Q ss_pred chHHHHHHHhhCCCCCC-CHHHHHHHHHHHhhhcccChHHHH
Q psy14303 116 YTRPFIQHLMARKVEHW-DPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 116 Y~~~li~~L~~~~l~hw-D~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
=+..+|+.|-.. +.+- |.++|+|+.++|++|-...-+++.
T Consensus 17 ~R~~~i~~l~~~-lp~m~d~em~eLa~~tl~KL~~mtD~ef~ 57 (64)
T PF14203_consen 17 SREGTIENLTAA-LPYMDDSEMRELAESTLRKLDAMTDAEFA 57 (64)
T ss_dssp HHHHHHHHHHHS-TTTS--HHHHHHHHHHHHHHTT--HHHHH
T ss_pred CHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 345667666553 6777 999999999999999876544443
No 28
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=42.68 E-value=63 Score=30.64 Aligned_cols=89 Identities=17% Similarity=0.284 Sum_probs=61.9
Q ss_pred chhhchhhHHHHHHhhccC--cccc-HHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCcc--ccceee
Q psy14303 17 SYIRDAACYVCWAFARAYD--HHTL-EPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGI--DILTRA 91 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~--~~~l-~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi--~il~~~ 91 (161)
..+.|+..|+.|-.-.... .+.+ .......++.|+.++++=+.-.+|+.+...+|..+=.+|...-..+ +++..+
T Consensus 410 ~gl~d~~~~l~~~~~~~~~~~~~~l~~~~~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe~c 489 (633)
T PF08568_consen 410 KGLEDALLFLLWVALTSSSIELSELPSEVFMQFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEETRFKFIRDLLENC 489 (633)
T ss_pred hhHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHhHHHHHHHHHhcC
Confidence 3479999999988777665 2333 3456689999999999999999999999999999988853322222 444444
Q ss_pred chh-----hhhhhhhHHHH
Q psy14303 92 DYF-----SVGNRQSAYLD 105 (161)
Q Consensus 92 Dy~-----sv~~r~~a~l~ 105 (161)
.|- .++..|.-.+.
T Consensus 490 ~~~~~k~~~I~~lKd~i~~ 508 (633)
T PF08568_consen 490 PFESLKASAIGWLKDEILK 508 (633)
T ss_pred CCHhHHHHHHHHHHHHHHH
Confidence 442 34444444433
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.83 E-value=37 Score=33.60 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCCchhhhhhHHHHHHHhc
Q psy14303 48 QGLLVVTCYDKEINCRRAASAAFQELVG 75 (161)
Q Consensus 48 ~~Ll~~alFDrevniRRaAsAAlQE~vG 75 (161)
...|..++-|.+..+|++|.+|++|+.+
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 3455577899999999999999998854
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.43 E-value=1.2e+02 Score=30.12 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCCchhhhhhHHHHHHH
Q psy14303 47 AQGLLVVTCYDKEINCRRAASAAFQEL 73 (161)
Q Consensus 47 ~~~Ll~~alFDrevniRRaAsAAlQE~ 73 (161)
....|.-.+-|++..+||+|..+|.+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~ 648 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTET 648 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhh
Confidence 345666778899999999998888764
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=37.98 E-value=66 Score=28.55 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=30.0
Q ss_pred ccceeechhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhc
Q psy14303 86 DILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLV 148 (161)
Q Consensus 86 ~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~ 148 (161)
++++.+.=-....++-.|+-++......++...-.++.|.+ .+.|-|+.+|.+|-++|+.+.
T Consensus 46 ~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~k-dl~~~n~~~~~lAL~~l~~i~ 107 (526)
T PF01602_consen 46 EVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQK-DLNSPNPYIRGLALRTLSNIR 107 (526)
T ss_dssp HHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-HHCSSSHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hhcCCCHHHHHHHHhhhhhhc
Confidence 34443332233455666665555555444433334444433 355555555555555555554
No 32
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=36.21 E-value=46 Score=19.68 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=20.9
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHhhhc
Q psy14303 121 IQHLMARKVEHWDPEIRKLTAKTLPRLV 148 (161)
Q Consensus 121 i~~L~~~~l~hwD~~iR~Laa~al~~L~ 148 (161)
+..|++ -+.+-|.++++-++.||++|+
T Consensus 14 i~~Lv~-ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQ-LLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHH-HTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHh
Confidence 344444 235999999999999999986
No 33
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=36.12 E-value=55 Score=18.47 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHhhhc
Q psy14303 130 EHWDPEIRKLTAKTLPRLV 148 (161)
Q Consensus 130 ~hwD~~iR~Laa~al~~L~ 148 (161)
.+-|..+++-+..+|.+|+
T Consensus 22 ~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 22 KSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cCCCHHHHHHHHHHHHHHc
Confidence 3679999999999999986
No 34
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.48 E-value=62 Score=24.07 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhcc
Q psy14303 41 PLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGR 76 (161)
Q Consensus 41 ~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR 76 (161)
|..+.-...|++.-++|++-.|+++|-..|.|..=-
T Consensus 3 ~~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 3 PDFEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 456677888999999999999999998888776543
No 35
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=33.40 E-value=95 Score=26.10 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=60.5
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCcc----ccceee
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGI----DILTRA 91 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi----~il~~~ 91 (161)
...||++|-| ++..--+|+.+.+.+..+.. |.+..+|+++ +..+|+. |.- ..+ ++++-.
T Consensus 87 ~~~vr~~a~~---aLg~~~~~~a~~~li~~l~~--------d~~~~vR~~a----a~aL~~~-~~~-~a~~~l~~~l~~~ 149 (335)
T COG1413 87 DPRVRDAAAD---ALGELGDPEAVPPLVELLEN--------DENEGVRAAA----ARALGKL-GDE-RALDPLLEALQDE 149 (335)
T ss_pred CHHHHHHHHH---HHHccCChhHHHHHHHHHHc--------CCcHhHHHHH----HHHHHhc-Cch-hhhHHHHHHhccc
Confidence 3478999888 78877776554443333322 9999999998 4455666 432 111 222211
Q ss_pred chhh-hhhhhhH----HHHHHHHHh--cCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccC
Q psy14303 92 DYFS-VGNRQSA----YLDISVYIA--QFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLD 151 (161)
Q Consensus 92 Dy~s-v~~r~~a----~l~~~~~va--~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~ 151 (161)
+.-+ ......+ ......... ..++....+++. +.+-+..+|.-++.+|+.+....
T Consensus 150 ~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~-----l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 150 DSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIEL-----LEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHH-----HhCchHHHHHHHHHHHHHhhcch
Confidence 1000 0000001 011111111 223444445543 45556699999999999998775
No 36
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=31.57 E-value=44 Score=31.66 Aligned_cols=34 Identities=35% Similarity=0.552 Sum_probs=28.8
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccCh
Q psy14303 118 RPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDR 152 (161)
Q Consensus 118 ~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p 152 (161)
..++| |+-++..|-|+++|+.|++||.+++...|
T Consensus 470 ~~lie-lL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 470 KSLIE-LLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred HHHHH-HHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 45665 45578999999999999999999998776
No 37
>PRK14625 hypothetical protein; Provisional
Probab=31.05 E-value=42 Score=25.38 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred CccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccc
Q psy14303 35 DHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGID 86 (161)
Q Consensus 35 ~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~ 86 (161)
+|+.+.|--..++.+||+.|+=|--=-+...+...++++-|-.|+++| |+.
T Consensus 55 dp~ll~~eD~e~LeDLI~aA~NdA~~k~~~~~~~~m~~~tgg~~~~lP-G~~ 105 (109)
T PRK14625 55 DESLVQPGEGEVIADLIVAAHADAKKKLDAKQAQLMQEAAGPMAGLMG-GLP 105 (109)
T ss_pred CHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCC
Confidence 444444444567888888888775544555555566666676644467 763
No 38
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=30.74 E-value=86 Score=20.43 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=27.8
Q ss_pred ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccC
Q psy14303 114 EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLD 151 (161)
Q Consensus 114 ~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~ 151 (161)
|.|...+++-+.+ .+-|..+|.+|+..|.+....+
T Consensus 13 p~~~~~l~~il~~---~~~~~~~R~~A~i~LKn~I~~~ 47 (77)
T PF03810_consen 13 PGFWQYLLQILSS---NSQDPEVRQLAAILLKNLIKKN 47 (77)
T ss_dssp TCHHHHHHHHHHC---TTSCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHc
Confidence 6788888876655 6679999999999998876554
No 39
>PF14136 DUF4303: Domain of unknown function (DUF4303)
Probab=30.20 E-value=46 Score=25.29 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=42.0
Q ss_pred hhhhhHHHHHHHhccCCCCCCCccccceeechhhhhhhhhHHHHHHHHHhcC
Q psy14303 62 CRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQF 113 (161)
Q Consensus 62 iRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~sv~~r~~a~l~~~~~va~~ 113 (161)
|..|+.++|+++.-++|+.-.-|..+.+-.++.+++.--|+.-.+....+.+
T Consensus 1 i~~a~~~~f~~l~~~~~~e~~YafaL~~d~~~~~~~~aanT~e~L~~~~~~~ 52 (155)
T PF14136_consen 1 IYEAARAAFEELLSEHPDETFYAFALYTDDEAMTVGLAANTEEALERILEDY 52 (155)
T ss_pred ChHHHHHHHHHHHHHCCCCcEEEEEEEcCCCcceehhhhccHHHHHHHhccc
Confidence 4578899999999999887778888888888888888878777677666543
No 40
>PF14679 FANCI_HD1: FANCI helical domain 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=29.94 E-value=79 Score=23.00 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=34.5
Q ss_pred HHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC
Q psy14303 26 VCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ 77 (161)
Q Consensus 26 ~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~ 77 (161)
+.+|+||-.. .++.+-++++..++.+.-|.+ ++-.|+=|||++.-.
T Consensus 28 llLsvarI~R---feeqvfd~Lk~~i~k~~kd~~---~~~~SkwL~~l~p~~ 73 (87)
T PF14679_consen 28 LLLSVARIQR---FEEQVFDFLKAAIVKSFKDDQ---KQQGSKWLQDLVPQS 73 (87)
T ss_dssp HHHHHTTSGG---GHHHHHHHHHHHHHHHHHHHH---HHTT-HHHHHHS---
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHhCChhhHHhcCCc
Confidence 4577777643 567788999999999999988 788889999987543
No 41
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=28.90 E-value=1.3e+02 Score=21.66 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=37.0
Q ss_pred HHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCC-CCCCcccc
Q psy14303 26 VCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGG-NPPYGIDI 87 (161)
Q Consensus 26 ~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g-~~~~gi~i 87 (161)
+.||--+.++++....++ .|+..|+..++- +..+ .-.+-.-|.|++.+++- .-|+++.|
T Consensus 4 ~~Fa~~~~fs~~q~s~~~-~i~~~ll~~~i~-~~~~-~~~~~~~fk~~l~~~sv~rpp~~~~i 63 (101)
T PF14769_consen 4 FLFAKEQGFSWEQTSAFL-SILKELLEKNIE-KGMS-LEDSFKYFKELLLRHSVQRPPFSIGI 63 (101)
T ss_pred hHhHhhCCCCHHHHHHHH-HHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHhccCCCCcccCc
Confidence 467888888876554333 577777664444 3333 44566889999988832 34667655
No 42
>KOG1543|consensus
Probab=27.66 E-value=28 Score=30.54 Aligned_cols=27 Identities=33% Similarity=0.687 Sum_probs=18.3
Q ss_pred eeeccCCCCCCchhhc-hhhHHHHHHhhc
Q psy14303 6 YDEPKGFCSVGSYIRD-AACYVCWAFARA 33 (161)
Q Consensus 6 ~d~~~g~~s~G~~VRD-Aacf~~WslaR~ 33 (161)
||-|.-. .+=..||| ..|-.||||+=.
T Consensus 113 ~DwR~~~-~~~~~vkdQg~CgsCWAFaa~ 140 (325)
T KOG1543|consen 113 FDWRDKG-AVTPPVKDQGSCGSCWAFAAT 140 (325)
T ss_pred ccccccC-CcCCCcCCCCcCcchHHHHHH
Confidence 4444433 23345899 899999999854
No 43
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=27.28 E-value=1.4e+02 Score=24.42 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCCCCchhhchhhHHHHHHhhcc--CccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHh
Q psy14303 12 FCSVGSYIRDAACYVCWAFARAY--DHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELV 74 (161)
Q Consensus 12 ~~s~G~~VRDAacf~~WslaR~y--~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~v 74 (161)
..++...+=++=..=+|++-=+| .|.++......+ ..++..+++|+ ...|-.-+.|||.+|
T Consensus 136 ~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~-a~~L~~~L~~~-~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 136 GKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSF-AKLLGNALYDQ-PDLRPIICQALRRLV 198 (198)
T ss_pred cchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHH-HHHHHHHHhcC-cchHHHHHHHHHHHC
Confidence 34555666677777899998887 345676555444 45557778885 789999999999876
No 44
>KOG1824|consensus
Probab=26.45 E-value=2.8e+02 Score=29.06 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=32.2
Q ss_pred cCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 112 QFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 112 ~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
.+.+|-+.+.+-|++ ....-...+|-+-|++||+|+..+|+...
T Consensus 925 ~~~~~v~~IW~lL~k-~cE~~eegtR~vvAECLGkL~l~epesLl 968 (1233)
T KOG1824|consen 925 GLKPYVEKIWALLFK-HCECAEEGTRNVVAECLGKLVLIEPESLL 968 (1233)
T ss_pred hhhhhHHHHHHHHHH-hcccchhhhHHHHHHHhhhHHhCChHHHH
Confidence 345677777766655 34444456699999999999999999764
No 45
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=24.54 E-value=3.5e+02 Score=21.44 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC---CCCCCccccceeechhh-----hhhhhhHHHHHHHHHhcC
Q psy14303 42 LVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG---GNPPYGIDILTRADYFS-----VGNRQSAYLDISVYIAQF 113 (161)
Q Consensus 42 ~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~---g~~~~gi~il~~~Dy~s-----v~~r~~a~l~~~~~va~~ 113 (161)
.++.++..++--++ ++==.+|-.|..+||-++...- ..+||.-++..+...-+ ...-..+|-.+. .+-+.
T Consensus 4 ~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~-~LL~~ 81 (193)
T PF12612_consen 4 LVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLV-KLLDL 81 (193)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHH-HHhcc
Confidence 34455555444443 3333579999999999993320 13565444444333222 344455565555 66778
Q ss_pred ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy14303 114 EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVP 149 (161)
Q Consensus 114 ~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~ 149 (161)
++|+.+++..|+-. ++.-...+.+-|..||-.-..
T Consensus 82 ~~y~~~ll~Glv~S-~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 82 PEYRYSLLSGLVVS-AGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHHHHHhHHHhc-CCCCchhHHHHHHHHHHHHHH
Confidence 89999999999862 333555777778888876653
No 46
>KOG2025|consensus
Probab=22.87 E-value=4.2e+02 Score=26.89 Aligned_cols=70 Identities=23% Similarity=0.183 Sum_probs=46.0
Q ss_pred ceeeeeccCCCCCCchhhchhhHHHHHHhhccCc-cccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhc
Q psy14303 3 ALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDH-HTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVG 75 (161)
Q Consensus 3 ~L~~d~~~g~~s~G~~VRDAacf~~WslaR~y~~-~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vG 75 (161)
.++|-.-||.-|.-..||==.|=++ ++-.+. .++-+-+-+....=+..-+||||-++|+=|--||--+=|
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqil---a~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQIL---ALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHH---HHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 4567778899999999997666554 333231 123333444444445667899999999999888654434
No 47
>KOG2160|consensus
Probab=22.09 E-value=83 Score=28.43 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccChHHHHh
Q psy14303 128 KVEHWDPEIRKLTAKTLPRLVPLDREYFLT 157 (161)
Q Consensus 128 ~l~hwD~~iR~Laa~al~~L~~~~p~~~~~ 157 (161)
.+.|-|.++|++||.-|+..++-+|.-...
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 679999999999999999999999976543
No 48
>KOG0829|consensus
Probab=20.95 E-value=64 Score=26.40 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=22.9
Q ss_pred HHHHHhccCCCCCCCccccceeechhhhhhhhhHH
Q psy14303 69 AFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAY 103 (161)
Q Consensus 69 AlQE~vGR~~g~~~~gi~il~~~Dy~sv~~r~~a~ 103 (161)
-+||+-||| -.-.+.|+||.+..- ....-++++
T Consensus 102 ~y~dMaaRh-Rar~~~I~Iikv~~v-~a~~~kR~~ 134 (169)
T KOG0829|consen 102 CYRDMAARH-RARFRSIQIIKVAEV-PAEDCKRAY 134 (169)
T ss_pred HHHHHHHHh-hhcccceeEEEEeee-eHHHhchHH
Confidence 347888999 666678899887766 455555554
No 49
>KOG1842|consensus
Probab=20.75 E-value=76 Score=30.02 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=19.4
Q ss_pred hhhhhhHHHHHHHhccCCCCCC
Q psy14303 61 NCRRAASAAFQELVGRQGGNPP 82 (161)
Q Consensus 61 niRRaAsAAlQE~vGR~~g~~~ 82 (161)
|||-+|.+++||.+++. -.+|
T Consensus 353 ~Irl~a~~~lqEkiL~L-~sLP 373 (505)
T KOG1842|consen 353 NIRLEAKQYLQEKILRL-QSLP 373 (505)
T ss_pred HHHHHHHHHHHHHhccc-cCCC
Confidence 79999999999999999 7777
No 50
>KOG3974|consensus
Probab=20.57 E-value=93 Score=27.67 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=29.5
Q ss_pred hhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC
Q psy14303 23 ACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ 77 (161)
Q Consensus 23 acf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~ 77 (161)
|||+.|+=.=+-.+. +....+++=.....|||...|||+. ||.
T Consensus 237 a~fl~w~k~~~~e~~-----------~~~~~a~~a~s~~vr~a~rlafk~~-gR~ 279 (306)
T KOG3974|consen 237 ATFLSWAKLLSGEQD-----------SAAFLAAVAGSIMVRRAGRLAFKRH-GRS 279 (306)
T ss_pred HHHHHHHHhccCCcc-----------chhhhhhhhhHHHHHHHHHhhhhhc-Ccc
Confidence 799999841111111 4455566667788899999999986 665
No 51
>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins.
Probab=20.55 E-value=58 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.9
Q ss_pred hHHHHHHHhccCCC
Q psy14303 66 ASAAFQELVGRQGG 79 (161)
Q Consensus 66 AsAAlQE~vGR~~g 79 (161)
+.+++||.||..||
T Consensus 22 ~n~~~~~~l~~~pg 35 (58)
T smart00580 22 GNPAIKERLGDVPG 35 (58)
T ss_pred cCHHHHHHhcCCCc
Confidence 78999999998854
No 52
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=20.53 E-value=1.6e+02 Score=27.15 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=23.4
Q ss_pred hCCCCCCCHHHHHHHHHHHhhhcccChH
Q psy14303 126 ARKVEHWDPEIRKLTAKTLPRLVPLDRE 153 (161)
Q Consensus 126 ~~~l~hwD~~iR~Laa~al~~L~~~~p~ 153 (161)
..++.|.++.+|+++.+.|+++......
T Consensus 83 ~~gL~h~~~~Vr~l~l~~l~~~~~~~~~ 110 (503)
T PF10508_consen 83 QRGLTHPSPKVRRLALKQLGRIARHSEG 110 (503)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 3488999999999999999998865543
Done!