Query psy14303
Match_columns 161
No_of_seqs 114 out of 217
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 16:24:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 96.2 0.021 7.2E-07 44.4 8.1 131 16-154 70-210 (242)
2 2vgl_B AP-2 complex subunit be 94.6 0.33 1.1E-05 43.0 11.3 138 14-157 250-390 (591)
3 2bpt_A Importin beta-1 subunit 92.8 0.26 8.8E-06 43.9 7.2 136 17-154 383-534 (861)
4 4db8_A Armadillo-repeat protei 92.7 0.15 5.1E-06 38.8 4.9 131 17-149 110-251 (252)
5 4db6_A Armadillo repeat protei 92.6 0.55 1.9E-05 34.6 7.8 139 15-155 24-173 (210)
6 1u6g_C TIP120 protein, CAND1; 92.1 0.75 2.6E-05 43.6 9.8 61 16-77 99-165 (1230)
7 4hxt_A De novo protein OR329; 91.8 0.19 6.5E-06 37.6 4.4 137 16-154 99-246 (252)
8 1ibr_B P95, importin beta-1 su 91.0 0.98 3.4E-05 36.7 8.2 112 16-159 143-256 (462)
9 1wa5_B Importin alpha subunit; 90.9 0.96 3.3E-05 38.7 8.5 139 16-156 228-377 (530)
10 2bpt_A Importin beta-1 subunit 90.6 0.82 2.8E-05 40.6 8.0 134 17-152 467-630 (861)
11 4db8_A Armadillo-repeat protei 90.4 1.1 3.7E-05 33.8 7.6 138 17-156 68-216 (252)
12 2qk1_A Protein STU2; STU2P, XM 90.3 1 3.6E-05 35.8 7.7 132 18-152 76-223 (249)
13 4db6_A Armadillo repeat protei 90.1 0.24 8.1E-06 36.6 3.5 132 16-149 67-209 (210)
14 2jdq_A Importin alpha-1 subuni 89.0 1.4 4.8E-05 35.9 7.7 136 16-156 163-312 (450)
15 1qgr_A Protein (importin beta 88.0 1.6 5.6E-05 38.8 7.9 135 16-152 379-540 (876)
16 4fdd_A Transportin-1; heat rep 87.8 1.2 4.2E-05 40.4 7.1 139 20-159 603-752 (852)
17 1b3u_A Protein (protein phosph 87.8 0.79 2.7E-05 38.6 5.5 128 17-150 416-549 (588)
18 4hxt_A De novo protein OR329; 87.7 0.69 2.4E-05 34.5 4.6 136 17-154 16-162 (252)
19 1u6g_C TIP120 protein, CAND1; 87.3 1.3 4.3E-05 42.1 7.2 122 16-160 1019-1143(1230)
20 1b3u_A Protein (protein phosph 85.0 1.6 5.4E-05 36.7 5.9 127 18-151 141-273 (588)
21 1oyz_A Hypothetical protein YI 84.6 2.4 8.1E-05 32.8 6.4 22 51-72 59-80 (280)
22 4fdd_A Transportin-1; heat rep 84.4 2.9 9.9E-05 38.0 7.8 113 41-154 85-208 (852)
23 4hat_C Exportin-1; heat repeat 83.3 3.4 0.00011 39.9 8.1 104 17-155 467-575 (1023)
24 1xqr_A HSPBP1 protein; armadil 82.8 3 0.0001 34.3 6.7 105 17-154 139-243 (296)
25 3m1i_C Exportin-1; heat repeat 82.1 1.7 5.8E-05 41.0 5.4 104 18-155 468-575 (1049)
26 2qk2_A LP04448P; mini spindles 81.6 2.8 9.5E-05 32.1 5.7 132 16-153 28-167 (242)
27 1qgr_A Protein (importin beta 80.5 1.2 4.1E-05 39.6 3.6 133 18-152 708-874 (876)
28 1wa5_B Importin alpha subunit; 80.5 3.7 0.00013 35.0 6.6 135 17-156 145-293 (530)
29 1oyz_A Hypothetical protein YI 77.5 7.1 0.00024 30.1 6.9 89 49-148 131-220 (280)
30 3tpo_A Importin subunit alpha- 76.7 10 0.00034 32.7 8.2 134 19-157 225-372 (529)
31 2z6h_A Catenin beta-1, beta-ca 76.4 4.1 0.00014 35.9 5.8 27 129-155 507-533 (644)
32 1ibr_B P95, importin beta-1 su 75.8 1.6 5.4E-05 35.5 2.7 62 15-77 378-439 (462)
33 4b8j_A Importin subunit alpha- 75.4 5.9 0.0002 33.6 6.3 139 15-156 215-365 (528)
34 4b8j_A Importin subunit alpha- 75.2 10 0.00035 32.1 7.7 136 17-154 132-278 (528)
35 3gjx_A Exportin-1; transport, 74.8 3.6 0.00012 40.2 5.4 106 17-155 493-601 (1073)
36 2jdq_A Importin alpha-1 subuni 73.3 11 0.00037 30.5 7.2 132 16-151 33-181 (450)
37 2z6g_A B-catenin; FULL-length, 71.4 7.4 0.00025 35.8 6.4 133 16-155 163-311 (780)
38 1w63_A Adapter-related protein 70.8 3.1 0.00011 37.1 3.6 105 46-153 313-418 (618)
39 3ul1_B Importin subunit alpha- 70.4 25 0.00087 30.1 9.3 134 21-156 208-352 (510)
40 2vgl_B AP-2 complex subunit be 67.0 30 0.001 30.3 9.2 125 14-149 132-268 (591)
41 2x1g_F Cadmus; transport prote 65.4 5.4 0.00019 36.7 4.2 99 18-156 479-579 (971)
42 2npp_B PP2A, B subunit, serine 63.3 6.5 0.00022 35.1 4.1 38 119-156 369-406 (449)
43 2db0_A 253AA long hypothetical 63.2 5.6 0.00019 32.9 3.4 90 48-160 21-110 (253)
44 3fga_B Serine/threonine-protei 60.9 5.6 0.00019 35.1 3.2 39 118-156 335-373 (403)
45 3ul1_B Importin subunit alpha- 60.1 48 0.0016 28.3 9.0 136 18-155 116-267 (510)
46 3tpo_A Importin subunit alpha- 59.4 65 0.0022 27.5 9.7 138 17-156 134-287 (529)
47 3ltm_A Alpha-REP4; protein eng 59.3 31 0.0011 25.1 6.7 19 130-148 153-171 (211)
48 3ltm_A Alpha-REP4; protein eng 57.9 8 0.00027 28.4 3.2 25 130-154 184-208 (211)
49 2qk1_A Protein STU2; STU2P, XM 57.4 33 0.0011 26.9 7.0 107 45-152 60-178 (249)
50 3nmw_A APC variant protein; AR 56.0 63 0.0021 26.9 8.8 109 18-158 233-343 (354)
51 3ltj_A Alpharep-4; protein eng 55.9 25 0.00084 25.5 5.6 20 54-73 84-103 (201)
52 3nmz_A APC variant protein; pr 54.3 51 0.0018 28.7 8.3 107 18-156 349-457 (458)
53 2z6g_A B-catenin; FULL-length, 52.9 15 0.00053 33.6 4.9 28 129-156 643-670 (780)
54 2z6h_A Catenin beta-1, beta-ca 51.3 43 0.0015 29.3 7.4 132 16-154 27-174 (644)
55 1wa5_C Importin alpha RE-expor 50.9 13 0.00045 34.5 4.1 54 17-75 472-525 (960)
56 1jdh_A Beta-catenin; beta-cate 50.8 1E+02 0.0035 25.3 9.3 56 17-73 115-170 (529)
57 1jdh_A Beta-catenin; beta-cate 50.5 29 0.00097 28.7 5.8 132 16-155 30-178 (529)
58 1rij_A E6APN1 peptide; Trp-CAG 47.5 3.7 0.00013 22.7 -0.1 9 69-77 1-9 (26)
59 2x19_B Importin-13; nuclear tr 45.5 15 0.00052 33.5 3.6 104 18-160 464-567 (963)
60 4ffb_C Protein STU2; tubulin f 41.8 1.2E+02 0.0041 23.5 8.5 131 18-152 70-215 (278)
61 3ltj_A Alpharep-4; protein eng 41.0 60 0.0021 23.3 5.7 21 53-73 52-72 (201)
62 2l7k_A Uncharacterized protein 37.3 78 0.0027 21.8 5.3 39 116-155 19-57 (76)
63 3ibv_A Exportin-T; karyopherin 30.5 21 0.00073 34.0 2.1 46 110-155 526-572 (980)
64 3nmw_A APC variant protein; AR 30.0 1.5E+02 0.0053 24.5 7.2 140 16-157 140-300 (354)
65 1xm9_A Plakophilin 1; armadill 29.0 1.9E+02 0.0066 24.2 7.7 132 19-156 18-178 (457)
66 1xqr_A HSPBP1 protein; armadil 28.5 75 0.0026 25.8 4.8 32 123-154 85-116 (296)
67 4ady_A RPN2, 26S proteasome re 28.3 1.4E+02 0.0047 29.2 7.2 97 49-152 581-679 (963)
68 3nmz_A APC variant protein; pr 24.8 2E+02 0.0067 25.0 7.1 139 17-157 257-416 (458)
69 1te4_A Conserved protein MTH18 24.6 76 0.0026 21.6 3.7 18 130-147 114-131 (131)
70 3ibv_A Exportin-T; karyopherin 23.5 1.2E+02 0.0041 28.8 5.9 129 16-150 714-871 (980)
71 3now_A UNC-45 protein, SD10334 23.1 1.5E+02 0.0052 28.0 6.4 113 42-156 619-744 (810)
72 2x1g_F Cadmus; transport prote 20.3 90 0.0031 28.6 4.2 53 17-77 520-574 (971)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.16 E-value=0.021 Score=44.36 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=91.0
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccce----ee
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILT----RA 91 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~----~~ 91 (161)
-.+||.+||-.+=.|++...+ .+.+++..++..|+. .+=|..-.+|.+|..|+.+++.-. + ++ +++. ..
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~-~~~~~~~~ilp~ll~-~l~d~~~~vr~~a~~aL~~~~~~~-~-~~---~ll~~l~~~l 142 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAK-RFSNYASACVPSLLE-KFKEKKPNVVTALREAIDAIYAST-S-LE---AQQESIVESL 142 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTS-C-HH---HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHcC-C-HH---HHHHHHHHHH
Confidence 356899999999999998765 578888888777765 467999999999999999998755 2 11 1111 11
Q ss_pred chhhhhhhhhHHHHHHHHHhcC------ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 92 DYFSVGNRQSAYLDISVYIAQF------EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 92 Dy~sv~~r~~a~l~~~~~va~~------~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
+--.-..|..+..-++..+..+ ..|.+.++..|+. .+.+-+.++|.-|.++++.|+..-++.
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~-~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVK-TLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 1002234555554444444443 2356677777765 457888999999999999998765554
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.62 E-value=0.33 Score=43.02 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=87.2
Q ss_pred CCCchhhchhhHHHHHHhhcc--CccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccc-ee
Q psy14303 14 SVGSYIRDAACYVCWAFARAY--DHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDIL-TR 90 (161)
Q Consensus 14 s~G~~VRDAacf~~WslaR~y--~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il-~~ 90 (161)
+.+..|+=+|+-.+..+.... +++.++..+..+...|+. +-+++-|+|..|--++.+++-++|..+..-+..+ ..
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~--L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~ 327 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT--LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVK 327 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH--HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCC
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheec
Confidence 456778888877777766543 444555555566666653 3468999999999999999998866654333211 11
Q ss_pred echhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHh
Q psy14303 91 ADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLT 157 (161)
Q Consensus 91 ~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~ 157 (161)
.| -....|..+. ++...+++- +-.+.+++.|... +.+-|.++|+-++.+|++++...|.....
T Consensus 328 ~~-d~~~Ir~~al-~~L~~l~~~-~nv~~iv~~L~~~-l~~~d~~~r~~~v~aI~~la~~~~~~~~~ 390 (591)
T 2vgl_B 328 YN-DPIYVKLEKL-DIMIRLASQ-ANIAQVLAELKEY-ATEVDVDFVRKAVRAIGRCAIKVEQSAER 390 (591)
T ss_dssp TT-SCHHHHHHHH-HHHHHTCCS-STHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cC-ChHHHHHHHH-HHHHHHCCh-hhHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhChhHHHH
Confidence 01 0133344443 333333332 2345677777652 35669999999999999999988865443
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.78 E-value=0.26 Score=43.86 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=82.2
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCC---CCccccce-eec
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP---PYGIDILT-RAD 92 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~---~~gi~il~-~~D 92 (161)
-.+|++|++.+=+++....++.+.+++..+...| +..+-|++-.+|.++.-++-.+..-.+..+ ++--.++. +..
T Consensus 383 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l-~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 383 WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI-LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH-HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 5699999999988887765556778888776644 456789999999988766655443321111 11001211 000
Q ss_pred hh--hhhhhhhHHHHHHHHHhc--------CccchHHHHHHHhhCCCCCC--CHHHHHHHHHHHhhhcccChHH
Q psy14303 93 YF--SVGNRQSAYLDISVYIAQ--------FEAYTRPFIQHLMARKVEHW--DPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 93 y~--sv~~r~~a~l~~~~~va~--------~~~Y~~~li~~L~~~~l~hw--D~~iR~Laa~al~~L~~~~p~~ 154 (161)
.. ....+..+...+...+.. ...|.+.+++.|+.. +.+. |..+|..+.++|+.+....|+.
T Consensus 462 ~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~-l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 462 GLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA-ANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHH-HTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH-HhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 00 122333333333333322 236788888888762 2223 3689999999999998877654
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.73 E-value=0.15 Score=38.76 Aligned_cols=131 Identities=13% Similarity=0.056 Sum_probs=74.7
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-cccee
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILTR 90 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~~ 90 (161)
..||..|+..++.++...... ....++.=+...++..+-|.+..+|+.|..++..+....+.. + ..++ .++++
T Consensus 110 ~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 188 (252)
T 4db8_A 110 EQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 578999999999998764321 123334334455666778889999999999998776432110 0 1112 22222
Q ss_pred echhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy14303 91 ADYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVP 149 (161)
Q Consensus 91 ~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~ 149 (161)
.+--....+.++...++......++.... .++.|+. -+.+-|+.+|+-|+.+|.+|+.
T Consensus 189 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp GGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHT-TTTCSSSHHHHTHHHHHHTTC-
T ss_pred HCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH-HhCCCCHHHHHHHHHHHHHHhc
Confidence 22212333444443333333222232222 3344443 3467788999999999998874
No 5
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.55 E-value=0.55 Score=34.59 Aligned_cols=139 Identities=10% Similarity=-0.041 Sum_probs=80.2
Q ss_pred CCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-ccc
Q psy14303 15 VGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DIL 88 (161)
Q Consensus 15 ~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il 88 (161)
--..+|-.||..+..+++... +....+++.=+...++..+-+.+-.+|..|..++..+.-..+.. + ..++ .++
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence 346788899988888886532 22233444334555667778889999999999999876321010 0 1122 233
Q ss_pred eeechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 89 TRADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 89 ~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
+..+--....+.++...+.......++... ..+..|++ -+.+-|..+|+-++.+|.+|+...|+..
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 322222334444444333332222222221 23444444 2345699999999999999998767654
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.13 E-value=0.75 Score=43.62 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=45.0
Q ss_pred CchhhchhhHHHHHHhhccCcc-----ccHHHHHHHHHHHHHHHhhc-CCchhhhhhHHHHHHHhccC
Q psy14303 16 GSYIRDAACYVCWAFARAYDHH-----TLEPLVQQIAQGLLVVTCYD-KEINCRRAASAAFQELVGRQ 77 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~-----~l~~~~~~l~~~Ll~~alFD-revniRRaAsAAlQE~vGR~ 77 (161)
-..||++||..+=.++....+. ...++...+...|+. .+-| .+..+|.+|..+|.|++++.
T Consensus 99 ~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~-~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 99 KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTS-AIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHH-HHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHh
Confidence 3578999999999999887654 234456666665554 4443 77899999999999999877
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=91.76 E-value=0.19 Score=37.58 Aligned_cols=137 Identities=12% Similarity=0.074 Sum_probs=77.5
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-ccce
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILT 89 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~ 89 (161)
...||..||..++.++.... +..+..++.=+...++..+-|.+..+|+.|..++..+.-..++. . ..++ .+++
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 177 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 177 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHH
Confidence 36789999999999987432 22222333334445556777889999999999998776433111 0 1111 1222
Q ss_pred eechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 90 RADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 90 ~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
..+--.-..+..+...+.......++..+ ..++.|++ -+.+-|..+|+.|..+|.+|+...|.+
T Consensus 178 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 178 LLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQK-LLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 22111123333333333322222222222 23455554 235779999999999999999776654
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=90.97 E-value=0.98 Score=36.74 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=75.2
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcC--CchhhhhhHHHHHHHhccCCCCCCCccccceeech
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDK--EINCRRAASAAFQELVGRQGGNPPYGIDILTRADY 93 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDr--evniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy 93 (161)
...+|.++..++-.+++.+.++.+.+++..++..++ ..+-|. +..+|++|..++..++.-. + ...
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~-~~l~~~~~~~~vr~~a~~~l~~~~~~~-~---~~~-------- 209 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAII-QGMRKEEPSNNVKLAATNALLNSLEFT-K---ANF-------- 209 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHH-HHHSTTCCCHHHHHHHHHHHHHHTTTT-H---HHH--------
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHH-H---Hhh--------
Confidence 347899999999999998877667777777665544 455566 5889999999998776321 0 000
Q ss_pred hhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303 94 FSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159 (161)
Q Consensus 94 ~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v 159 (161)
. ... +.+.+++.|.. .+.+-|..+|+-+.++|..+....|+.+...+
T Consensus 210 -~----~~~-------------~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 256 (462)
T 1ibr_B 210 -D----KES-------------ERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQYMETYM 256 (462)
T ss_dssp -T----SHH-------------HHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT
T ss_pred -h----hhH-------------HHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 11113333332 24677899999999999999988887765544
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=90.89 E-value=0.96 Score=38.66 Aligned_cols=139 Identities=13% Similarity=0.030 Sum_probs=78.5
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----CCCcc--ccce
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----PPYGI--DILT 89 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~~~gi--~il~ 89 (161)
...||-.+|..++.+++...+..-......++. .++..+-|.+-.+|..|..++..+.-..+.. +..|+ .++.
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~-~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~ 306 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH-HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH-HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence 356888999999999987644322233333333 3344567888999999999998876432100 00111 2222
Q ss_pred eechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 90 RADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 90 ~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
...--....+..+...++......++... .++..|+. -+.+-|..+|+-|+.+|++|+...|+.+.
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL-LLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22211223344443333322222222111 23444443 23566899999999999999988777553
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=90.62 E-value=0.82 Score=40.60 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=80.7
Q ss_pred chhhchhhHHHHHHhhccC---ccccHHHHHHHHHHHHHHHh-hcCCchhhhhhHHHHHHHhccCCCC-CCCcc-ccce-
Q psy14303 17 SYIRDAACYVCWAFARAYD---HHTLEPLVQQIAQGLLVVTC-YDKEINCRRAASAAFQELVGRQGGN-PPYGI-DILT- 89 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~---~~~l~~~~~~l~~~Ll~~al-FDrevniRRaAsAAlQE~vGR~~g~-~~~gi-~il~- 89 (161)
..||.+||..+-.++.... ++.+.|++..+...|+-..- .|.+-++|.++..|+..++... |. +..=+ .++.
T Consensus 467 ~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~l~~~ 545 (861)
T 2bpt_A 467 PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA-TDTVAETSASISTF 545 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC-CGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc-chhhHHHHHHHHHH
Confidence 5689999988888888764 46788999988888776544 4777899999999999998877 42 10000 0000
Q ss_pred eechh------------------hhhhhhhHHHHHHHHHh----cCccchHHHHHHHhh-CCCCCCCHHHHHHHHHHHhh
Q psy14303 90 RADYF------------------SVGNRQSAYLDISVYIA----QFEAYTRPFIQHLMA-RKVEHWDPEIRKLTAKTLPR 146 (161)
Q Consensus 90 ~~Dy~------------------sv~~r~~a~l~~~~~va----~~~~Y~~~li~~L~~-~~l~hwD~~iR~Laa~al~~ 146 (161)
+.+.. ....+..+...+...+. .+..|.+.++..|+. .+-.++| .+|+-+..+++.
T Consensus 546 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~v~~~~~~~l~~ 624 (861)
T 2bpt_A 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA-FIEDDVFYAISA 624 (861)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGG-GTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCC-cHHHHHHHHHHH
Confidence 00100 00112223222222222 244577777777665 1223344 789888888888
Q ss_pred hcccCh
Q psy14303 147 LVPLDR 152 (161)
Q Consensus 147 L~~~~p 152 (161)
++...+
T Consensus 625 l~~~~~ 630 (861)
T 2bpt_A 625 LAASLG 630 (861)
T ss_dssp HHHHHG
T ss_pred HHHHHh
Confidence 875443
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=90.42 E-value=1.1 Score=33.84 Aligned_cols=138 Identities=11% Similarity=-0.005 Sum_probs=77.2
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-cccee
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILTR 90 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~~ 90 (161)
..||-.|+..++.++...+ +.-...++.=+...++..+-+.+..+|+.|..++..+....+.. . ..++ .+++.
T Consensus 68 ~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 68 EQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence 6789999999998887532 12223333334556666777888999999999997664322100 0 1122 22222
Q ss_pred echhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 91 ADYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 91 ~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
.+--....+..+...+.......++.... .+..|+. -+.+-|..+|+-++.+|++|+..+|+...
T Consensus 147 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 216 (252)
T 4db8_A 147 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQKQ 216 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 22112233444433333222212222211 2334443 23456999999999999999988876543
No 12
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.32 E-value=1 Score=35.82 Aligned_cols=132 Identities=13% Similarity=0.084 Sum_probs=88.2
Q ss_pred hhhchhhHHHHHHhhccC-ccccH-HHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCc-c-ccce-eec
Q psy14303 18 YIRDAACYVCWAFARAYD-HHTLE-PLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYG-I-DILT-RAD 92 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~-~~~l~-~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~g-i-~il~-~~D 92 (161)
.||=+||..+=.++.... + .++ +|...++..|+ ..+=|..-.+|.++.+|+..++.-.+-..+++ + +++. +..
T Consensus 76 ~v~~~A~~al~~la~~l~~~-~f~~~y~~~llp~ll-~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~ 153 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTP-GFSKDYVSLVFTPLL-DRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE 153 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-TSCHHHHHHHHHHHH-HGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc-cccHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHH
Confidence 478889999999998887 5 577 89988877655 44568889999999999999988773233443 2 2222 111
Q ss_pred hh---hhhhhhhHHHHHHHHHhcCc-------cch-HHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccCh
Q psy14303 93 YF---SVGNRQSAYLDISVYIAQFE-------AYT-RPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDR 152 (161)
Q Consensus 93 y~---sv~~r~~a~l~~~~~va~~~-------~Y~-~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p 152 (161)
.. .-..|..+..-++..+...+ .|. +.++..|.. .+.+-|.++|.-|.++|+.++..-+
T Consensus 154 ~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~-~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 154 HMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ-IVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 11 12344555545555443333 344 667766655 3477799999999999999875433
No 13
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.06 E-value=0.24 Score=36.64 Aligned_cols=132 Identities=13% Similarity=0.048 Sum_probs=75.2
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-ccce
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILT 89 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~ 89 (161)
-..||..|+..++.++...+ +.....++.=....++..+-+.+..+|+.|..|+..+....+.. + ..++ .+++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 145 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH
Confidence 35788899888888886532 11222333334455666677889999999999998876422111 0 1122 2222
Q ss_pred eechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy14303 90 RADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVP 149 (161)
Q Consensus 90 ~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~ 149 (161)
+.+--....+.++...+.......++... ..++.|++ -+.+-|..+|+-|+.+|.+|+.
T Consensus 146 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHhc
Confidence 22211233444444433333322233222 23445554 3467899999999999999975
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=89.00 E-value=1.4 Score=35.86 Aligned_cols=136 Identities=12% Similarity=0.015 Sum_probs=75.8
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC---------CCCCCccc
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG---------GNPPYGID 86 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~---------g~~~~gi~ 86 (161)
...||-.|+..++.+++...|..-...+..+... ++..+-|.+..+|+.|..++-.+....+ |.+| .
T Consensus 163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~---~ 238 (450)
T 2jdq_A 163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV-LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR---R 238 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHH-HHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH---H
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-HHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH---H
Confidence 4679999999999999875332211222222222 2233457788899999999887654220 2222 2
Q ss_pred cceeechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 87 ILTRADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 87 il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
+++...--....+..+...++......++..+ .++..|+. -+.+.|..+|+-++.+|++|+...++.+.
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~vr~~a~~~L~~l~~~~~~~~~ 312 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH-LLSSPKESIKKEACWTISNITAGNRAQIQ 312 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH-HTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22222111122333333333322222221111 24555554 24567999999999999999987776554
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.97 E-value=1.6 Score=38.76 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=80.2
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCC---CCccccce---
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP---PYGIDILT--- 89 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~---~~gi~il~--- 89 (161)
-..+|++|++.+=+++....|+.+.+++..+...| +..+-|++..+|.+|..++..+..-.+..+ |+--.++.
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l-~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~ 457 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL-IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHH
Confidence 35789999887767776655455667777766544 456789999999999999987776542211 11101111
Q ss_pred -eechhhhhhhhhHHHHHHHHHh------------------cCccchHHHHHHHhhCC--CCCCCHHHHHHHHHHHhhhc
Q psy14303 90 -RADYFSVGNRQSAYLDISVYIA------------------QFEAYTRPFIQHLMARK--VEHWDPEIRKLTAKTLPRLV 148 (161)
Q Consensus 90 -~~Dy~sv~~r~~a~l~~~~~va------------------~~~~Y~~~li~~L~~~~--l~hwD~~iR~Laa~al~~L~ 148 (161)
..+- .-..+.++..-+...+. .+..|.+.++..|+..- ...-+..+|.-+.++|+.|+
T Consensus 458 ~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~ 536 (876)
T 1qgr_A 458 EGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIV 536 (876)
T ss_dssp HHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHH
Confidence 1111 11223333333332221 14568889999988621 11123578888888888887
Q ss_pred ccCh
Q psy14303 149 PLDR 152 (161)
Q Consensus 149 ~~~p 152 (161)
...+
T Consensus 537 ~~~~ 540 (876)
T 1qgr_A 537 KNSA 540 (876)
T ss_dssp HTCC
T ss_pred HHCc
Confidence 6544
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=87.79 E-value=1.2 Score=40.44 Aligned_cols=139 Identities=17% Similarity=0.097 Sum_probs=84.2
Q ss_pred hchhhHHHHHHhhccCccccHHHH-HHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCcc-ccc----eeech
Q psy14303 20 RDAACYVCWAFARAYDHHTLEPLV-QQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGI-DIL----TRADY 93 (161)
Q Consensus 20 RDAacf~~WslaR~y~~~~l~~~~-~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi-~il----~~~Dy 93 (161)
|-+++=.+=++++...+ .+++++ ..-+..++...+-|+.-.+|.+|.+++.++..-.|+.+-.-+ +++ +..+-
T Consensus 603 ~~~~l~~l~~l~~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~ 681 (852)
T 4fdd_A 603 MIVALDLLSGLAEGLGG-NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP 681 (852)
T ss_dssp HHHHHHHHHHHHHHHGG-GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHhH-hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc
Confidence 33333333346776653 566776 223445666667888899999999999998855533321111 111 11111
Q ss_pred hhhhhhhhHHHHH---HHHHh-cCccchHHHHHHHhh-CCCCCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303 94 FSVGNRQSAYLDI---SVYIA-QFEAYTRPFIQHLMA-RKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159 (161)
Q Consensus 94 ~sv~~r~~a~l~~---~~~va-~~~~Y~~~li~~L~~-~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v 159 (161)
-..+.++++--.+ +..+. ++..|-..++..|+. .+-.+....+++-++.+|++|....|+.+...+
T Consensus 682 ~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l 752 (852)
T 4fdd_A 682 EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML 752 (852)
T ss_dssp TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccH
Confidence 1123344443333 33332 467888888888876 222445679999999999999999999876543
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=87.77 E-value=0.79 Score=38.60 Aligned_cols=128 Identities=17% Similarity=0.138 Sum_probs=74.8
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCC--Cc-cc-cceeec
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPP--YG-ID-ILTRAD 92 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~--~g-i~-il~~~D 92 (161)
-.||-+++-.+-.+++...++...+.+ ..++...+-|.+-.+|++|..++.+++... |.-. +. +. +++..+
T Consensus 416 ~~vr~~~~~~l~~l~~~~~~~~~~~~l----~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~~~~~~~llp~l~~~~~ 490 (588)
T 1b3u_A 416 WRVRLAIIEYMPLLAGQLGVEFFDEKL----NSLCMAWLVDHVYAIREAATSNLKKLVEKF-GKEWAHATIIPKVLAMSG 490 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHH----HHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-CHHHHHHHTHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHcCHHHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhh
Confidence 357778888888888877655433332 233444567999999999999999887665 3200 00 01 111110
Q ss_pred hhhhhhhhhHHHHHHHHHhcC--ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhccc
Q psy14303 93 YFSVGNRQSAYLDISVYIAQF--EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPL 150 (161)
Q Consensus 93 y~sv~~r~~a~l~~~~~va~~--~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~ 150 (161)
--....|..+...++.....+ +.|.+.++..|+. .+.+-++++|.-++++|+.+...
T Consensus 491 ~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 491 DPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-hCCCCCchHHHHHHHHHHHHHHH
Confidence 001123333332222222111 2355666666654 36788999999999999999864
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=87.72 E-value=0.69 Score=34.45 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=79.0
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-cccee
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILTR 90 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~~ 90 (161)
..+|-.|+..++.+++... +..+.+++.=+...++..+-+.+..+|+.|..++..+....+.. + ..++ .++..
T Consensus 16 ~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 94 (252)
T 4hxt_A 16 SETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 94 (252)
T ss_dssp HHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 5688889988888887753 22333444344555667778889999999999998887652110 0 0122 12222
Q ss_pred echhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 91 ADYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 91 ~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
.+--....+.++...+.......++.... .+..|++ -+.+-|..+|+-++.+|++|+...|+.
T Consensus 95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 95 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK-LLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 22112233333332222222122333222 3444443 345778999999999999999877765
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=87.29 E-value=1.3 Score=42.06 Aligned_cols=122 Identities=18% Similarity=0.153 Sum_probs=71.2
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC-CCCCCCccccceeechh
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ-GGNPPYGIDILTRADYF 94 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~-~g~~~~gi~il~~~Dy~ 94 (161)
-..||.+|.+.+.++++. .|+.+.+++..+...|...+.-..|+ +... .|.|-|-. | -
T Consensus 1019 ~~~vr~~a~~~l~~~~~~-~~~~~~~~l~~~lp~l~~~~~~~~~~-------------~~~v~~gp~k~~v------d-~ 1077 (1230)
T 1u6g_C 1019 DLNVRRVALVTFNSAAHN-KPSLIRDLLDTVLPHLYNETKVRKEL-------------IREVEMGPFKHTV------D-D 1077 (1230)
T ss_dssp STHHHHHHHHHHHHHHHH-CGGGTGGGHHHHHHHHHHTTSCCGGG-------------EEEEEETTEEEEE------E-T
T ss_pred cHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHHHHHHHHhcccHHh-------------heeeccCCccccc------C-C
Confidence 356999999999999987 45677788888888777665332221 1000 01111111 1 1
Q ss_pred hhhhhhhHHHHHHHHHhcCcc--chHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhhC
Q psy14303 95 SVGNRQSAYLDISVYIAQFEA--YTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVG 160 (161)
Q Consensus 95 sv~~r~~a~l~~~~~va~~~~--Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v~ 160 (161)
.+-.|++||--+...+..... =-..++++.+ .++.. |.++|.++-.-|.+|...+|..+...++
T Consensus 1078 ~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~-~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~ 1143 (1230)
T 1u6g_C 1078 GLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVE-DGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLD 1143 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHH-HTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-cccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 223445554444433322110 0122344422 25544 5899999999999999999998876654
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=84.98 E-value=1.6 Score=36.71 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=66.6
Q ss_pred hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC-C-CCccccc-ee-ech
Q psy14303 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN-P-PYGIDIL-TR-ADY 93 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~-~-~~gi~il-~~-~Dy 93 (161)
.+|-+|+-++..++....+. ..+.+ ..++...+-|++-.+|++|..++.++....|+. . +.=+.++ .. .|=
T Consensus 141 ~~R~~a~~~l~~~~~~~~~~----~~~~l-~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~ 215 (588)
T 1b3u_A 141 TSRTSACGLFSVCYPRVSSA----VKAEL-RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215 (588)
T ss_dssp HHHHHHGGGHHHHTTTSCHH----HHHHH-HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhcCHH----HHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC
Confidence 44555555555554443321 11222 233445567999999999999998887666211 0 0001111 11 111
Q ss_pred hhhhhhhhHHHHHHHHHhcCc--cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccC
Q psy14303 94 FSVGNRQSAYLDISVYIAQFE--AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLD 151 (161)
Q Consensus 94 ~sv~~r~~a~l~~~~~va~~~--~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~ 151 (161)
....|..+...+.......+ .+.+.++..|. ..+.+-+..+|+.++++|+.+....
T Consensus 216 -~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~-~~~~d~~~~vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 216 -QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR-QAAEDKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp -CHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH-HHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHccCCCHHHHHHHHHHHHHHHHHh
Confidence 12334444433333333333 23344444433 3457888999999999999998754
No 21
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=84.65 E-value=2.4 Score=32.82 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHhhcCCchhhhhhHHHHHH
Q psy14303 51 LVVTCYDKEINCRRAASAAFQE 72 (161)
Q Consensus 51 l~~alFDrevniRRaAsAAlQE 72 (161)
+...+-|++-.+|+.|..+|.+
T Consensus 59 L~~~l~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 59 AIEFCSDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 3445678888899988777643
No 22
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=84.42 E-value=2.9 Score=37.96 Aligned_cols=113 Identities=11% Similarity=0.052 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC-CCCCCCcc-ccceeechhhhhhhhhHHHHHHHHHhcCc----
Q psy14303 41 PLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ-GGNPPYGI-DILTRADYFSVGNRQSAYLDISVYIAQFE---- 114 (161)
Q Consensus 41 ~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~-~g~~~~gi-~il~~~Dy~sv~~r~~a~l~~~~~va~~~---- 114 (161)
+-.....+..++.++-|++-.+|+.+.-++-++..+- ++..|.=+ .+++...=-....+..+...+......++
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~ 164 (852)
T 4fdd_A 85 NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD 164 (852)
T ss_dssp HHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhc
Confidence 3444555666666678999999999999999988764 23334322 22222211122344555444333333222
Q ss_pred -----cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 115 -----AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 115 -----~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
.+...++..|+. .+.+-+.++|..|.++|..+....|..
T Consensus 165 ~~~~~~~~~~il~~l~~-~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQ-FFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HCSSSSCHHHHHHHHTT-TTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred hhhhcchHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 335667776665 567889999999999999888666543
No 23
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=83.27 E-value=3.4 Score=39.90 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=73.2
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhh-----cCCchhhhhhHHHHHHHhccCCCCCCCccccceee
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCY-----DKEINCRRAASAAFQELVGRQGGNPPYGIDILTRA 91 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alF-----DrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~ 91 (161)
=+.|+|+||..=|++-+-.++...+++..++..|+ ..+- |+.+.+|..+ =..+||+ .
T Consensus 467 W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll-~l~~~~~~~d~k~~v~~t~----~~~lGry-~------------ 528 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL-DLCVKKRGKDNKAVVASDI----MYVVGQY-P------------ 528 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH-HHHHHCCSHHHHHHHHHHH----HHHHHTC-H------------
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH-HhhhccccCcchHHHHHHH----HHHHHHH-H------------
Confidence 46799999999999999887667789999999655 4454 3333333322 2456777 1
Q ss_pred chhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 92 DYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 92 Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
+| ++..++|-+++++.|+.. +..-++.+...|+.||..|+...+..+
T Consensus 529 ~w----------------l~~~~~~L~~vl~~L~~~-l~~~~~~v~~~A~~al~~l~~~c~~~l 575 (1023)
T 4hat_C 529 RF----------------LKAHWNFLRTVILKLFEF-MHETHEGVQDMACDTFIKIVQKCKYHF 575 (1023)
T ss_dssp HH----------------HHHCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HH----------------HhccHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 233567788899988873 333357899999999999998766544
No 24
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=82.81 E-value=3 Score=34.34 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=68.5
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccceeechhhh
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSV 96 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~sv 96 (161)
..||-.|+|.+..++|.+.+ ..+.+++.=....++..+-+.+..+|+.|..|+..+..-. |.
T Consensus 139 ~~v~~~A~~ALsnl~~~~~~-~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~----~~------------- 200 (296)
T 1xqr_A 139 DTVRVKALFAISCLVREQEA-GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH----PE------------- 200 (296)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GG-------------
T ss_pred HHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----hH-------------
Confidence 56899999999999998764 2334554223445566677889999999999998776432 10
Q ss_pred hhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 97 GNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 97 ~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
....+.+. ..-++|++. +.+.|..+|+-++.+|++|+...|.-
T Consensus 201 ---------~~~~vv~~-g~i~~Lv~L-----L~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 201 ---------HKGTLCSM-GMVQQLVAL-----VRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp ---------GHHHHHHT-THHHHHHHH-----HTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred ---------HHHHHHHc-CCHHHHHHH-----HcCCChhHHHHHHHHHHHHHhCChhH
Confidence 00011111 122344443 34668999999999999998876643
No 25
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=82.08 E-value=1.7 Score=40.98 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=64.3
Q ss_pred hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhh----cCCchhhhhhHHHHHHHhccCCCCCCCccccceeech
Q psy14303 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCY----DKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADY 93 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alF----DrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy 93 (161)
..|+|+||.+=|++-......-++++..+...|+...-+ |+...+| +. .=+.+||+ .
T Consensus 468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~--~~--~~~~lgry-~-------------- 528 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVA--SD--IMYVVGQY-P-------------- 528 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHH--HH--HHHHHHHC-H--------------
T ss_pred HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHH--HH--HHHHHHHH-H--------------
Confidence 579999999999886654322224456666665542211 1111111 11 11366666 1
Q ss_pred hhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 94 FSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 94 ~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
......++|.+.+++.|+. ++.+-++.++..|+.||.+++...+..+
T Consensus 529 --------------~~~~~~~~~l~~vl~~ll~-~l~~~~~~V~~~A~~al~~l~~~~~~~l 575 (1049)
T 3m1i_C 529 --------------RFLKAHWNFLRTVILKLFE-FMHETHEGVQDMACDTFIKIVQKCKYHF 575 (1049)
T ss_dssp --------------HHHHHCHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred --------------HHHHhHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122234677788888887 5777789999999999999998766554
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=81.59 E-value=2.8 Score=32.11 Aligned_cols=132 Identities=11% Similarity=0.025 Sum_probs=74.8
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhh-cCCchhhhhhHHHHHHHhccCCCC-C-CCccccce-ee
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCY-DKEINCRRAASAAFQELVGRQGGN-P-PYGIDILT-RA 91 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alF-DrevniRRaAsAAlQE~vGR~~g~-~-~~gi~il~-~~ 91 (161)
--.+|-+|...+=.+..... +...+....++..| ...+- |.+.++|.+|..++.++.-.. |. | |+-..|+. +.
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~-~~~~~~~~~i~~~L-~~~l~kd~~~~V~~~a~~~l~~la~~l-~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHP-KLENGEYGALVSAL-KKVITKDSNVVLVAMAGKCLALLAKGL-AKRFSNYASACVPSLL 104 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCS-SBCCCCCHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHH-HHHhccCCCHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence 34566677777777776622 11222233444433 33454 999999999999999998666 42 2 11111211 11
Q ss_pred chh---hhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhh-cccChH
Q psy14303 92 DYF---SVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRL-VPLDRE 153 (161)
Q Consensus 92 Dy~---sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L-~~~~p~ 153 (161)
+.+ ....|..+..-+...+...+ .+.+++.|.. .+.|-++.+|+-+...|+.+ ....|+
T Consensus 105 ~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~-~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 105 EKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVE-SLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 111 22333444333333333322 3567777665 46677889999999999995 444566
No 27
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=80.50 E-value=1.2 Score=39.63 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=80.2
Q ss_pred hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCC-----------chhhhhhHHHHHHHhccCCCCC----C
Q psy14303 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKE-----------INCRRAASAAFQELVGRQGGNP----P 82 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDre-----------vniRRaAsAAlQE~vGR~~g~~----~ 82 (161)
.+|-+++..+=.+++...+ .+.+++..+...|+.. +=++. .++|.++..++++++.-.++.. +
T Consensus 708 ~~~~~~~~~l~~i~~~~g~-~~~~~l~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~ 785 (876)
T 1qgr_A 708 SVKPQILSVFGDIALAIGG-EFKKYLEVVLNTLQQA-SQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP 785 (876)
T ss_dssp GGHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHH-HTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred HhhHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 4665554444444665544 4667777777665443 33321 3899999999998876652211 0
Q ss_pred --Ccc-----ccceee-----chh-hhhhhhhHHHHHHHHHhcCc-----cc-hHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy14303 83 --YGI-----DILTRA-----DYF-SVGNRQSAYLDISVYIAQFE-----AY-TRPFIQHLMARKVEHWDPEIRKLTAKT 143 (161)
Q Consensus 83 --~gi-----~il~~~-----Dy~-sv~~r~~a~l~~~~~va~~~-----~Y-~~~li~~L~~~~l~hwD~~iR~Laa~a 143 (161)
..+ .|++.. |-. ..+.|+.|..-++..+..++ .| .+.++..|+...+.+-|+.+|+.|+.|
T Consensus 786 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a 865 (876)
T 1qgr_A 786 DVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA 865 (876)
T ss_dssp GGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHH
Confidence 111 122111 211 44566666655555443332 24 456777787767788899999999999
Q ss_pred HhhhcccCh
Q psy14303 144 LPRLVPLDR 152 (161)
Q Consensus 144 l~~L~~~~p 152 (161)
++.+.+.+|
T Consensus 866 ~~~~~~~~~ 874 (876)
T 1qgr_A 866 TKELRKLKN 874 (876)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 999987665
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=80.49 E-value=3.7 Score=34.96 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=76.2
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC---------CCCCCcccc
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG---------GNPPYGIDI 87 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~---------g~~~~gi~i 87 (161)
..||..|+..++.++.... +.....+..-+...++..+-+++..+|..|..+|..+.+-.+ |.+| .+
T Consensus 145 ~~v~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~---~L 220 (530)
T 1wa5_B 145 EMLQLEAAWALTNIASGTS-AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME---PI 220 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH---HH
T ss_pred HHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHH---HH
Confidence 4588888888888876431 111222222223444445557889999999999998876421 2222 22
Q ss_pred ceeechhhhhhhhhHHHHHHHHHhcC-cc----chHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 88 LTRADYFSVGNRQSAYLDISVYIAQF-EA----YTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 88 l~~~Dy~sv~~r~~a~l~~~~~va~~-~~----Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
+++..--....+.++...++.....- +. ....++..|+. -+.+.|..+|.-++.+|+.|+...|+.+.
T Consensus 221 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~~~~~~~~~ 293 (530)
T 1wa5_B 221 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK-LIYSMDTETLVDACWAISYLSDGPQEAIQ 293 (530)
T ss_dssp HHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 22222123344455443333322111 11 11234444443 34678999999999999999987776443
No 29
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=77.54 E-value=7.1 Score=30.06 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCcc-ccceeechhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhC
Q psy14303 49 GLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGI-DILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMAR 127 (161)
Q Consensus 49 ~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi-~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~ 127 (161)
..+...+-|++-.+|++|..|+- +. |. |..+ .++...+--.-..|..+-.-++. ...-.+..++.|+.
T Consensus 131 ~~L~~~l~d~~~~vR~~a~~aL~----~~-~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~----~~~~~~~~~~~L~~- 199 (280)
T 1oyz_A 131 EQSQITAFDKSTNVRRATAFAIS----VI-ND-KATIPLLINLLKDPNGDVRNWAAFAINI----NKYDNSDIRDCFVE- 199 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHH----TC-----CCHHHHHHHHTCSSHHHHHHHHHHHHH----HTCCCHHHHHHHHH-
T ss_pred HHHHHHhhCCCHHHHHHHHHHHH----hc-CC-HHHHHHHHHHHcCCCHHHHHHHHHHHHh----hccCcHHHHHHHHH-
Confidence 34445567888888888777664 33 22 1122 11111110011223333222221 11112334444433
Q ss_pred CCCCCCHHHHHHHHHHHhhhc
Q psy14303 128 KVEHWDPEIRKLTAKTLPRLV 148 (161)
Q Consensus 128 ~l~hwD~~iR~Laa~al~~L~ 148 (161)
.+.+-|..+|.-++.+|+++.
T Consensus 200 ~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 200 MLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHHTT
T ss_pred HhcCCCHHHHHHHHHHHHHhC
Confidence 245677888888888888876
No 30
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=76.70 E-value=10 Score=32.71 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=72.7
Q ss_pred hhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC---------CCCCCCccccce
Q psy14303 19 IRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ---------GGNPPYGIDILT 89 (161)
Q Consensus 19 VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~---------~g~~~~gi~il~ 89 (161)
+.-.+++.++.++|...+..-...+..++. .|+..+.+.+-.++..|..|+..+.--. .|.+|.=++++.
T Consensus 225 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp-~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILP-TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTCCCHHHHHHHHH-HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHhhHHH-HHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 334566777788887655432223333333 3445567888889999999987665321 033332223332
Q ss_pred eechhhhhhhhhHHHHHHHHHhcCccchHHHHH-----HHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHh
Q psy14303 90 RADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQ-----HLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLT 157 (161)
Q Consensus 90 ~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~-----~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~ 157 (161)
..| ...+..+...+......-++....+++ .|+. -+.+.+..+|+-++.+|++|+...++....
T Consensus 304 ~~~---~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~-LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 304 ATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp CSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHH-HTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred CCC---hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHH-HHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 222 222333322222222222233333322 2222 246889999999999999999888876543
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=76.38 E-value=4.1 Score=35.94 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 129 VEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 129 l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
+.|-|+++|+.|+.+|.+|+...++..
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 478899999999999999998766543
No 32
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=75.85 E-value=1.6 Score=35.51 Aligned_cols=62 Identities=21% Similarity=0.148 Sum_probs=47.9
Q ss_pred CCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC
Q psy14303 15 VGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ 77 (161)
Q Consensus 15 ~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~ 77 (161)
..-.+|+||++.+=+++....++.+++++..++ ..++..+=|++..+|.+|..++..+....
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~-~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHH-HHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 346799999999999988766555666666655 45566677999999999999998776655
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=75.43 E-value=5.9 Score=33.56 Aligned_cols=139 Identities=12% Similarity=0.022 Sum_probs=75.9
Q ss_pred CCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----CCCc-c-ccc
Q psy14303 15 VGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----PPYG-I-DIL 88 (161)
Q Consensus 15 ~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~~~g-i-~il 88 (161)
....++..+|..++.+++.. |......+..++. .++..+.+.+-.+|..|..|+-.+....+.. +..| + .++
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~-~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv 292 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALP-ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHH-HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHH
Confidence 35678999999999999986 2222223333333 3344567888999999999998766322100 0011 1 222
Q ss_pred eeechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCC-CHHHHHHHHHHHhhhcccChHHHH
Q psy14303 89 TRADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHW-DPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 89 ~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hw-D~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
.+..--....+..+...++......++... .++..|+. -+.+- +..+|+-|+.+|++|+...++.+.
T Consensus 293 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~ 365 (528)
T 4b8j_A 293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLS-LLTQNLKKSIKKEACWTISNITAGNKDQIQ 365 (528)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHH-HHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence 222111223344443333322221121111 12333333 12355 899999999999999987776543
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=75.17 E-value=10 Score=32.07 Aligned_cols=136 Identities=15% Similarity=0.106 Sum_probs=79.7
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----CCCc-c-cccee
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----PPYG-I-DILTR 90 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~~~g-i-~il~~ 90 (161)
..+|..|+..+..++... ++....+++.=+...++..+-+++..+|+.|..||-.+.+..+.. ...| + .+++.
T Consensus 132 ~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~l 210 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQ 210 (528)
T ss_dssp HHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHH
Confidence 468888888888877642 222223333334555666777889999999999998776543110 0112 2 33333
Q ss_pred e-chhhhhhhhhHHHHHHHHHhcCcc----chHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 91 A-DYFSVGNRQSAYLDISVYIAQFEA----YTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 91 ~-Dy~sv~~r~~a~l~~~~~va~~~~----Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
. +--....+.++-..++......+. .....+..|+. -+.+-|..++.-++.+|+.|+...++.
T Consensus 211 L~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~aL~~l~~~~~~~ 278 (528)
T 4b8j_A 211 LNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALAR-LIHSNDEEVLTDACWALSYLSDGTNDK 278 (528)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHH-HTTCCCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 3 222344455554433332222111 11234444444 247789999999999999999877654
No 35
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=74.79 E-value=3.6 Score=40.15 Aligned_cols=106 Identities=12% Similarity=0.250 Sum_probs=72.7
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcC---CchhhhhhHHHHHHHhccCCCCCCCccccceeech
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDK---EINCRRAASAAFQELVGRQGGNPPYGIDILTRADY 93 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDr---evniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy 93 (161)
=+.+-|+||..-|+|.+..++.-++++..+...|+.- +-.+ |--.+.|++.-+ .+||+ .
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L-~e~~~~kd~k~~vas~i~~--vlgrY-~-------------- 554 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGL-CEQKRGKDNKAIIASNIMY--IVGQY-P-------------- 554 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH-HHHSCSHHHHHHHHHHHHH--HHHHC-H--------------
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcc-cccccccchhHHHHHHHHH--HHhhh-H--------------
Confidence 4578899999999998887654567888888877632 2111 111222222222 66776 1
Q ss_pred hhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 94 FSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 94 ~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
..++..++|.+++++.|+.. ...-++.+.+.|+.|+..++...+..+
T Consensus 555 --------------~wl~~h~~~L~~vl~~L~~~-m~~~~~~vq~aA~~af~~i~~~C~~~l 601 (1073)
T 3gjx_A 555 --------------RFLRAHWKFLKTVVNKLFEF-MHETHDGVQDMACDTFIKIAQKCRRHF 601 (1073)
T ss_dssp --------------HHHHHCHHHHHHHHHHHHHH-TTCCSTTHHHHHHHHHHHHHHHTGGGG
T ss_pred --------------HHHHhCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12335677889999999964 445588999999999999998887765
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=73.26 E-value=11 Score=30.48 Aligned_cols=132 Identities=7% Similarity=-0.023 Sum_probs=70.4
Q ss_pred CchhhchhhHHHHHHhhc-cCccccHHHHHH-HHHHHHHHHhhcC-CchhhhhhHHHHHHHhccC---------CCCCCC
Q psy14303 16 GSYIRDAACYVCWAFARA-YDHHTLEPLVQQ-IAQGLLVVTCYDK-EINCRRAASAAFQELVGRQ---------GGNPPY 83 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~-y~~~~l~~~~~~-l~~~Ll~~alFDr-evniRRaAsAAlQE~vGR~---------~g~~~~ 83 (161)
...+|..|+..+-.+... .++ .++..+.. -+...++..+-+. +..+|..|..++..+.... .|.+|
T Consensus 33 ~~~~r~~A~~~L~~l~~~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~- 110 (450)
T 2jdq_A 33 SPEQQLSATQKFRKLLSKEPNP-PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVP- 110 (450)
T ss_dssp CHHHHHHHHHHHHHHHHSSSSC-CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHH-
T ss_pred CHHHHHHHHHHHHHHhcCCCCC-cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHH-
Confidence 456788888877776543 333 33444443 2333444455566 7889999999998876521 02221
Q ss_pred ccccceeechhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcccC
Q psy14303 84 GIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLD 151 (161)
Q Consensus 84 gi~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~ 151 (161)
.+++...--....|..+...+.......++++.. ++..|+..--..-|..+|+.++.+|++|+...
T Consensus 111 --~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 111 --IFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp --HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 1222211112233444443333322222233322 23333331112468999999999999999654
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=71.37 E-value=7.4 Score=35.76 Aligned_cols=133 Identities=11% Similarity=0.131 Sum_probs=71.3
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHH--HHHHHHHHHHHhhcCCchhhhhhHHHHHHH---------hccCCCCCCCc
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLV--QQIAQGLLVVTCYDKEINCRRAASAAFQEL---------VGRQGGNPPYG 84 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~--~~l~~~Ll~~alFDrevniRRaAsAAlQE~---------vGR~~g~~~~g 84 (161)
-..||..|.-.++.++...... ...+ ..+...|+-..--+.+..+|+.|..+|..+ +++. |.+|
T Consensus 163 d~~vr~~A~~~L~~L~~~~~~~--~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~-g~I~-- 237 (780)
T 2z6g_A 163 DQVVVNKAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKS-GGIP-- 237 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHH--HHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT-THHH--
T ss_pred CHHHHHHHHHHHHHHhCCChhH--HHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHc-CCHH--
Confidence 3568999999999998754211 1111 123333332222345788999999999874 3444 3322
Q ss_pred cccceeechhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 85 IDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 85 i~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
.++.+..-..-..+..+...+.......++.+.. .+..|+. -+.+-+..+++.++.+|..|+..+++..
T Consensus 238 -~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~-lL~~~~~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 238 -ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp -HHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhcCChHHH
Confidence 2222222112233444433333322223333322 2334443 2234578899999999999987665543
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=70.77 E-value=3.1 Score=37.12 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCC-CCccccceeechhhhhhhhhHHHHHHHHHhcCccchHHHHHHH
Q psy14303 46 IAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP-PYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHL 124 (161)
Q Consensus 46 l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~-~~gi~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L 124 (161)
.+.+.+...+-+++-|+|..|-.++.+++.++|..+ +|-.+|+...+--....|+.+.. +...++.- +-.+.+++.|
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ale-lL~~l~~~-~nv~~iv~eL 390 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAME-LSFALVNG-NNIRGMMKEL 390 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHH-HHHHHCCS-SSTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHH-HHHHHccc-ccHHHHHHHH
Confidence 344455555667889999999999999988774322 11112222211113345555543 33333332 1123344444
Q ss_pred hhCCCCCCCHHHHHHHHHHHhhhcccChH
Q psy14303 125 MARKVEHWDPEIRKLTAKTLPRLVPLDRE 153 (161)
Q Consensus 125 ~~~~l~hwD~~iR~Laa~al~~L~~~~p~ 153 (161)
... +.+-|.++|+.+..+|+.++...|.
T Consensus 391 ~~~-l~~~d~e~r~~~v~~I~~la~k~~~ 418 (618)
T 1w63_A 391 LYF-LDSCEPEFKADCASGIFLAAEKYAP 418 (618)
T ss_dssp HHH-HHHCCHHHHHHHHHHHHHHHHSSCC
T ss_pred HHH-HHhCCHHHHHHHHHHHHHHHHHhCc
Confidence 431 2246899999999999999987643
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=70.42 E-value=25 Score=30.11 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=72.2
Q ss_pred chhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----CCCcc--ccceeechh
Q psy14303 21 DAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----PPYGI--DILTRADYF 94 (161)
Q Consensus 21 DAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~~~gi--~il~~~Dy~ 94 (161)
-.+++.++.++|...+..-...+..+.. .++..+.+.+-.++..|..|+..+.-..... ...|+ .++.+..--
T Consensus 208 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp-~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 286 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNPAPPLDAVEQILP-TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286 (510)
T ss_dssp HHHHHHHHHHHCCCSSCCCHHHHHHHHH-HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC
Confidence 3456677777887655322223333333 3445567888889999999998765322000 01121 122222211
Q ss_pred hhhhhhhHHHHHHHHHhcCccchHHHHHH-----HhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 95 SVGNRQSAYLDISVYIAQFEAYTRPFIQH-----LMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 95 sv~~r~~a~l~~~~~va~~~~Y~~~li~~-----L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
....+..+...+......-++....+++. |+ .-+.+.+.++|+-++.+|++|+...++...
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~-~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~ 352 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP-SLLTNPKTNIQKEATWTMSNITAGRQDQIQ 352 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC--CTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH-HHhcCCCHHHHHHHHHHHHHHHcCcHHHHH
Confidence 22233333333332222333444444432 11 224789999999999999999988877654
No 40
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=67.01 E-value=30 Score=30.31 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=75.4
Q ss_pred CCCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC--CCC--c-c-cc
Q psy14303 14 SVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN--PPY--G-I-DI 87 (161)
Q Consensus 14 s~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~--~~~--g-i-~i 87 (161)
+--..||-+|+..+--+++.+ |+.+.+ .-+...+...+-|++..+|.+|..||.|+....|+. ++. + + .+
T Consensus 132 d~~~~VRk~A~~al~~i~~~~-p~~~~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~L 207 (591)
T 2vgl_B 132 DEDPYVRKTAAVCVAKLHDIN-AQMVED---QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKL 207 (591)
T ss_dssp CSCHHHHHHHHHHHHHHHHSS-CCCHHH---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhC-hhhccc---ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHH
Confidence 345679999988888888854 543332 234456666778999999999999999987665332 110 0 0 11
Q ss_pred ceeechhhhhhhhhHHHHHH--HHHhcCc----cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy14303 88 LTRADYFSVGNRQSAYLDIS--VYIAQFE----AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVP 149 (161)
Q Consensus 88 l~~~Dy~sv~~r~~a~l~~~--~~va~~~----~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~ 149 (161)
++.. ...+-+.++. ..++.|. +-...+++.|.. .+.|-|..++.-|++++..+..
T Consensus 208 l~~l------~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~-~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 208 LTAL------NECTEWGQIFILDCLSNYNPKDDREAQSICERVTP-RLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp HHHH------HHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTT-CSCSSTTHHHHHHHHHHHHSCC
T ss_pred HHcC------CCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHhh
Confidence 1110 0011122111 1223332 122456665544 5689999999999999999875
No 41
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=65.37 E-value=5.4 Score=36.75 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=57.0
Q ss_pred hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhh--cCCchhhhhhHHHHHHHhccCCCCCCCccccceeechhh
Q psy14303 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCY--DKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFS 95 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alF--DrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~s 95 (161)
..|||+.|.+=++++.-... ..+++..++. ++ ..+. |....+|.++. +.+||+ .. +
T Consensus 479 ~~~eaal~~l~~iae~~~~~-~~~~l~~l~~-~l-~~l~~~d~~~~vr~~a~----~~l~~~-~~------------~-- 536 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGE-EKRQIPRLMR-VL-AEIPYEKLNVKLLGTAL----ETMGSY-CN------------W-- 536 (971)
T ss_dssp HHHHHHHHHHHHTTTC-------CHHHHHHH-HH-HHSCTTTSCHHHHHHHH----HHHHHT-HH------------H--
T ss_pred HHHHHHHHHHHHHHhhcChh-hhHHHHHHHH-HH-HhcCccccCHHHHHHHH----HHHHHH-HH------------H--
Confidence 48999999999999887643 2456666666 33 3333 55666776554 456666 11 1
Q ss_pred hhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 96 VGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 96 v~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
+...++|.+.++..|+.. + + +.++.-|+.||..|+...++.+.
T Consensus 537 --------------l~~~~~~l~~vl~~l~~~-l-~--~~v~~~A~~al~~l~~~~~~~l~ 579 (971)
T 2x1g_F 537 --------------LMENPAYIPPAINLLVRG-L-N--SSMSAQATLGLKELCRDCQLQLK 579 (971)
T ss_dssp --------------HC----CHHHHHHHHHHH-H-H--SSCHHHHHHHHHHHHHHCHHHHH
T ss_pred --------------HhcCHHHHHHHHHHHHHH-h-C--hHHHHHHHHHHHHHHHHHHHhcc
Confidence 111234556666666542 2 2 56788888888888866655443
No 42
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=63.26 E-value=6.5 Score=35.08 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 119 PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 119 ~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
.++..|....-.||+..+|.++..++..+...||+.+.
T Consensus 369 ii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 369 IMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp HHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 34555666666999999999999999999999998764
No 43
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=63.23 E-value=5.6 Score=32.91 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccceeechhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhC
Q psy14303 48 QGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMAR 127 (161)
Q Consensus 48 ~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~ 127 (161)
...++.+.||+|+ +-|++|-. . =-....++||...+..-...|++-.+++++-|+--
T Consensus 21 ~eii~~a~~d~~~---------l~~lI~~L-D-------------DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm 77 (253)
T 2db0_A 21 EKILIMAKYDESV---------LKKLIELL-D-------------DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSL 77 (253)
T ss_dssp HHHHHHHHHCHHH---------HHHHHHHT-T-------------CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHH---------HHHHHHHh-c-------------cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3456677777663 46666655 2 12345688998888888888999888888888652
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccChHHHHhhhC
Q psy14303 128 KVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVG 160 (161)
Q Consensus 128 ~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v~ 160 (161)
--..--...-+--|+++|.++...|+.+...||
T Consensus 78 ~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp 110 (253)
T 2db0_A 78 LKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP 110 (253)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhhcccCchHHHHHHHHhHHHHhCHHHHHhhHH
Confidence 001111222344578899999999998887775
No 44
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=60.90 E-value=5.6 Score=35.07 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 118 RPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 118 ~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
+.++..|.+..-.||+..+|.++..+|..+...||+.+-
T Consensus 335 Pii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 335 PIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp HHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 355666777778999999999999999999999887543
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=60.07 E-value=48 Score=28.34 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=77.2
Q ss_pred hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC---------CCCCCccccc
Q psy14303 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG---------GNPPYGIDIL 88 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~---------g~~~~gi~il 88 (161)
.++-.|+..+|.+|.. +++.-+..++.=+...++..+-+++..+|+.|..||-.+.|-.+ |.+|.=+.++
T Consensus 116 ~lq~~Aa~aL~nias~-~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL 194 (510)
T 3ul1_B 116 PIQFESAWALTNIASG-TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194 (510)
T ss_dssp HHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHH
Confidence 4666777777777754 33333344554455666677788999999999999987766321 3222111222
Q ss_pred eeechh--hhhhhhhHHHHHHHHHhcC-c----cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 89 TRADYF--SVGNRQSAYLDISVYIAQF-E----AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 89 ~~~Dy~--sv~~r~~a~l~~~~~va~~-~----~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
+..|.- ..+..+++-..++.....- + ..-..++..|+. -+.+-|.+++.-++.+|..|+...++..
T Consensus 195 ~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~-LL~~~~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 195 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp CSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHH-HHhcCCHHHHHHHHHHHHHHhhchhhhH
Confidence 222221 1222333322222211111 1 112344444443 3578899999999999999998776654
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=59.36 E-value=65 Score=27.51 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=79.0
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC---------CCCCCcccc
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG---------GNPPYGIDI 87 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~---------g~~~~gi~i 87 (161)
..++-.|+.++|.++..- ++.-+..++.=+...++..+-+++..+|..|..||-.+.|-.+ |.+|.=+.+
T Consensus 134 ~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l 212 (529)
T 3tpo_A 134 SPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212 (529)
T ss_dssp HHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence 346777888888888653 2222344554455666678888999999999999987776321 322211222
Q ss_pred ceeechh--hhhhhhhHHHHHHHHHhcC---c--cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 88 LTRADYF--SVGNRQSAYLDISVYIAQF---E--AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 88 l~~~Dy~--sv~~r~~a~l~~~~~va~~---~--~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
++..|.- ..+..+++-..++.....- . .....++..|+. -+.+-|.+++.-++.+|..|+...++...
T Consensus 213 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~-LL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 287 (529)
T 3tpo_A 213 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWAISYLTDGPNERIE 287 (529)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH-HhcCCcHHHHHHHHHHHHHhhhhhhhhHH
Confidence 3222221 1222333332222221111 1 112334444443 35788999999999999999987766543
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.30 E-value=31 Score=25.12 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHHHHhhhc
Q psy14303 130 EHWDPEIRKLTAKTLPRLV 148 (161)
Q Consensus 130 ~hwD~~iR~Laa~al~~L~ 148 (161)
.+.|+.+|.-++++|+.+.
T Consensus 153 ~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhC
Confidence 3455556665655555553
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.92 E-value=8 Score=28.41 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 130 EHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 130 ~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
.+-|+.+|+-|.++|..+....+.+
T Consensus 184 ~d~~~~vr~~A~~aL~~~~~~~~~~ 208 (211)
T 3ltm_A 184 ETGTGFARKVAVNYLETHKSFNHHH 208 (211)
T ss_dssp HHCCHHHHHHHHHHHHC--------
T ss_pred hCCCHHHHHHHHHHHHhcCCCCCCC
Confidence 4678999999999999998776654
No 49
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=57.43 E-value=33 Score=26.91 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC-CCC--CCccccce-eechhh---hhhhhhHHHHHHHHHhcCc---
Q psy14303 45 QIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG-GNP--PYGIDILT-RADYFS---VGNRQSAYLDISVYIAQFE--- 114 (161)
Q Consensus 45 ~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~-g~~--~~gi~il~-~~Dy~s---v~~r~~a~l~~~~~va~~~--- 114 (161)
.++..|....-=|.++.+|.+|.-|+.++.-..+ ..| ||...++. +.+.+. -..+..+..-+...+...+
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~ 139 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA 139 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc
Confidence 4444333322269999999999999999886553 234 23322322 333321 1112222222222222231
Q ss_pred --cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccCh
Q psy14303 115 --AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDR 152 (161)
Q Consensus 115 --~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p 152 (161)
.|-+.+++.|+. .+.|-++.+|+.+...|..+....+
T Consensus 140 ~~~~l~~ll~~l~~-~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 140 SSGRNEDMLKDILE-HMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp TTCTTHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHHcC
Confidence 357789998886 4667678999999999999886655
No 50
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=55.95 E-value=63 Score=26.94 Aligned_cols=109 Identities=10% Similarity=0.014 Sum_probs=59.6
Q ss_pred hhhchhhHHHHHHhhc--cCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccceeechhh
Q psy14303 18 YIRDAACYVCWAFARA--YDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFS 95 (161)
Q Consensus 18 ~VRDAacf~~WslaR~--y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~s 95 (161)
.|+..||-++|.++.. -+++.-+.+.+.=+...++..+-+.+..+++.|..|+-.+..+.
T Consensus 233 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~------------------ 294 (354)
T 3nmw_A 233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN------------------ 294 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC------------------
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC------------------
Confidence 4677777777877752 12221112222112233334444666667777777776554321
Q ss_pred hhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhh
Q psy14303 96 VGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTE 158 (161)
Q Consensus 96 v~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~ 158 (161)
.+....+.+.. .+..|++ -+..-|..+|+-|+.+|.+|+...|+...++
T Consensus 295 --------~~~~~~i~~~G-----~i~~Lv~-LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~~ 343 (354)
T 3nmw_A 295 --------PKDQEALWDMG-----AVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPAKYKDA 343 (354)
T ss_dssp --------HHHHHHHHHTT-----HHHHHHT-TTTCSSHHHHHHHHHHHHHHHTTCCGGGC--
T ss_pred --------HHHHHHHHHCC-----CHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCCHHHHhhh
Confidence 00011122211 3344443 2356699999999999999999999876554
No 51
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.90 E-value=25 Score=25.46 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=14.0
Q ss_pred HhhcCCchhhhhhHHHHHHH
Q psy14303 54 TCYDKEINCRRAASAAFQEL 73 (161)
Q Consensus 54 alFDrevniRRaAsAAlQE~ 73 (161)
.+-|++-.+|++|..++.++
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHh
Confidence 34577777888887777654
No 52
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=54.26 E-value=51 Score=28.74 Aligned_cols=107 Identities=10% Similarity=0.012 Sum_probs=57.9
Q ss_pred hhhchhhHHHHHHhhc--cCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccceeechhh
Q psy14303 18 YIRDAACYVCWAFARA--YDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFS 95 (161)
Q Consensus 18 ~VRDAacf~~WslaR~--y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~s 95 (161)
.|+..||-++|.++.. -+++..+.+++.=+...++..+-+.+..+++.|..|+-.+..+.
T Consensus 349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~------------------ 410 (458)
T 3nmz_A 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN------------------ 410 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC------------------
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC------------------
Confidence 3677777778877751 22222222222212223344444566667777777766554321
Q ss_pred hhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 96 VGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 96 v~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
.+....+.+. ..+..|++ -+..-|..+++-|+.||.+|+..+|...+
T Consensus 411 --------~~~~~~i~~~-----G~I~~Lv~-LL~s~~~~v~~~Aa~AL~nL~~~~p~ky~ 457 (458)
T 3nmz_A 411 --------PKDQEALWDM-----GAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPAKYK 457 (458)
T ss_dssp --------HHHHHHHHHH-----THHHHHHT-TTTCSSHHHHHHHHHHHHHHHTCCSCC--
T ss_pred --------HHHHHHHHHC-----CCHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCCHhhhc
Confidence 0001112111 13444443 23556999999999999999999887543
No 53
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=52.89 E-value=15 Score=33.62 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 129 VEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 129 l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
+.|-|.++|+.|+.||.+|+...|....
T Consensus 643 l~~~~~~Vr~~A~~aL~~l~~~~~~~~~ 670 (780)
T 2z6g_A 643 LHSRNEGVATYAAAVLFRMSEDKPQDYK 670 (780)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTSCTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCChHhhh
Confidence 4788999999999999999987764443
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=51.32 E-value=43 Score=29.32 Aligned_cols=132 Identities=11% Similarity=0.129 Sum_probs=70.5
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHH--HHHHHHHHHHHhhcCCchhhhhhHHHHHHHhc---------cCCCCCCCc
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLV--QQIAQGLLVVTCYDKEINCRRAASAAFQELVG---------RQGGNPPYG 84 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~--~~l~~~Ll~~alFDrevniRRaAsAAlQE~vG---------R~~g~~~~g 84 (161)
-..||..|+-.+..+++..... ...+ ..+...|+-...-+.+..+|+.|..+|.++.. .. |.+|
T Consensus 27 ~~~vr~~A~~~L~~La~~~~~~--~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~-g~i~-- 101 (644)
T 2z6h_A 27 DQVVVNKAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS-GGIP-- 101 (644)
T ss_dssp CHHHHHHHHHHHHHHHTSTTHH--HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT-THHH--
T ss_pred CHHHHHHHHHHHHHHHCCChhH--HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHc-CCHH--
Confidence 4579999999999999875421 1121 12333333333334578899999999986543 22 2222
Q ss_pred cccceeechhhhhhhhhHHHHHHHHHhcCccch-----HHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 85 IDILTRADYFSVGNRQSAYLDISVYIAQFEAYT-----RPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 85 i~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~-----~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
.++++..--....+..+...+.......++.. ...+..|+. -+.+-+..++..++.+|.+|+..+++.
T Consensus 102 -~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 102 -ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp -HHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -HHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH-HHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 22222211112333344333322222222222 223444444 223446788989999999999766654
No 55
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=50.86 E-value=13 Score=34.50 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=33.7
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhc
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVG 75 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vG 75 (161)
..||.+|| |.+.|--+ ..-+++...++..+ +..+-|.+.-+|-+|..||+.++-
T Consensus 472 p~vr~~a~---~~lg~~~~-~~~~~~l~~~l~~l-~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 472 IILRVDAI---KYIYTFRN-QLTKAQLIELMPIL-ATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHH---HHHHHTGG-GSCHHHHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ceehHHHH---HHHHHHHh-hCCHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHHHHh
Confidence 45888887 55555322 11123444444433 334558889999999999998663
No 56
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=50.76 E-value=1e+02 Score=25.29 Aligned_cols=56 Identities=7% Similarity=-0.089 Sum_probs=34.5
Q ss_pred chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHH
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQEL 73 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~ 73 (161)
..++..|+..+|.++...+. .-+.+.+.-+...++..+-+.+..+|..+..++..+
T Consensus 115 ~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 115 DSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56888888999998876432 112222333444455555667777777776666533
No 57
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=50.55 E-value=29 Score=28.74 Aligned_cols=132 Identities=11% Similarity=0.120 Sum_probs=69.5
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHH--HHHHHHHHHHhhcCCchhhhhhHHHHHHHh---------ccCCCCCCCc
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQ--QIAQGLLVVTCYDKEINCRRAASAAFQELV---------GRQGGNPPYG 84 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~--~l~~~Ll~~alFDrevniRRaAsAAlQE~v---------GR~~g~~~~g 84 (161)
-..||+.|...++.+++.-.. -...+. ..+..|+-..--+.+..+|+.|..++..+. +.. |.+|.=
T Consensus 30 ~~~v~~~A~~~L~~l~~~~~~--~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-g~i~~L 106 (529)
T 1jdh_A 30 DQVVVNKAAVMVHQLSKKEAS--RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS-GGIPAL 106 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSHHH--HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcc--HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHc-CCHHHH
Confidence 457899999999999975431 111111 233333322223457778999999998763 233 323211
Q ss_pred cccceeechhhhhhhhhHHHHHHHHHhcC-ccch-----HHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 85 IDILTRADYFSVGNRQSAYLDISVYIAQF-EAYT-----RPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 85 i~il~~~Dy~sv~~r~~a~l~~~~~va~~-~~Y~-----~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
+++++.-| -..+..+...+.. ++.. ++.+ ...+..|++ -+.+-+..++..++.+|..|+..+|+..
T Consensus 107 ~~lL~~~~---~~v~~~a~~~L~~-l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 107 VKMLGSPV---DSVLFYAITTLHN-LLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HHHTTCSC---HHHHHHHHHHHHH-HHHHCTTHHHHHHHHTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCC---HHHHHHHHHHHHH-HhcCCcchHHHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 12222222 1223333222222 2221 2222 223444443 2345678999999999999998766543
No 58
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=47.49 E-value=3.7 Score=22.69 Aligned_cols=9 Identities=56% Similarity=0.811 Sum_probs=7.1
Q ss_pred HHHHHhccC
Q psy14303 69 AFQELVGRQ 77 (161)
Q Consensus 69 AlQE~vGR~ 77 (161)
|+||++|..
T Consensus 1 alqellgqw 9 (26)
T 1rij_A 1 ALQELLGQW 9 (26)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 689999854
No 59
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=45.50 E-value=15 Score=33.52 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccceeechhhhh
Q psy14303 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVG 97 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~sv~ 97 (161)
..|||+||.+=+++..... ...+++..++. ++..+-+..-.+|.++.-++.-+--
T Consensus 464 ~~~eaal~al~~i~~~~~~-~~~~~l~~l~~--~l~~l~~~~~~vr~~~~~~l~~~~~---------------------- 518 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDV-NYSDVVPGLIG--LIPRISISNVQLADTVMFTIGALSE---------------------- 518 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCS-SCCSHHHHHHH--HGGGSCCCSHHHHHHHHHHHHHTHH----------------------
T ss_pred HHHHHHHHHHHHHHhhcCc-hhhHHHHHHHH--HHHhCCCCcHHHHHHHHHHHHHHHH----------------------
Q ss_pred hhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhhC
Q psy14303 98 NRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVG 160 (161)
Q Consensus 98 ~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v~ 160 (161)
.+...++|.+.++..|+. ++.+ +.++.-|+.||..++...++.+...++
T Consensus 519 -----------~l~~~~~~l~~vl~~l~~-~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~ 567 (963)
T 2x19_B 519 -----------WLADHPVMINSVLPLVLH-ALGN--PELSVSSVSTLKKICRECKYDLPPYAA 567 (963)
T ss_dssp -----------HHHHCHHHHTTTHHHHHH-HTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHH
T ss_pred -----------HHHhCHHHHHHHHHHHHH-HhCC--chHHHHHHHHHHHHHHHHHHHHHhhHH
No 60
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=41.82 E-value=1.2e+02 Score=23.46 Aligned_cols=131 Identities=12% Similarity=0.122 Sum_probs=75.9
Q ss_pred hhhchhhHHHHHHhhccCccc-----cHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccce-ee
Q psy14303 18 YIRDAACYVCWAFARAYDHHT-----LEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILT-RA 91 (161)
Q Consensus 18 ~VRDAacf~~WslaR~y~~~~-----l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~-~~ 91 (161)
+|-..++=++=+++..+.+.. ...++..++..|+--.+.|.--.+|..|..++-.++... +... .++. +.
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~---~~~e~l~ 145 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSIT---QSVELVI 145 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSH---HHHHHHG
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHH---HHHHHHH
Confidence 344455656667777665432 223456667777777788998899999999998888765 3211 1111 11
Q ss_pred chh---hhhhhhhHHHHHHHHHhcCcc---chHHHHHHHhh---CCCCCCCHHHHHHHHHHHhhhcccCh
Q psy14303 92 DYF---SVGNRQSAYLDISVYIAQFEA---YTRPFIQHLMA---RKVEHWDPEIRKLTAKTLPRLVPLDR 152 (161)
Q Consensus 92 Dy~---sv~~r~~a~l~~~~~va~~~~---Y~~~li~~L~~---~~l~hwD~~iR~Laa~al~~L~~~~p 152 (161)
... .-..+..+...+...+..|.. -....++.++. ..+.|-|+++|.-|.+.+..|...-.
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 111 122333444444444555431 12344555544 23599999999999999988876543
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.04 E-value=60 Score=23.30 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHhhcCCchhhhhhHHHHHHH
Q psy14303 53 VTCYDKEINCRRAASAAFQEL 73 (161)
Q Consensus 53 ~alFDrevniRRaAsAAlQE~ 73 (161)
..+-|++-.+|+.|..++-++
T Consensus 52 ~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 52 KALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhh
Confidence 344588888998887777543
No 62
>2l7k_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium difficile}
Probab=37.34 E-value=78 Score=21.77 Aligned_cols=39 Identities=23% Similarity=0.506 Sum_probs=27.6
Q ss_pred chHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 116 YTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 116 Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
=+..++..+-.. +..-|.++|+|+.++|++|-...-+.+
T Consensus 19 sR~~lie~i~~~-Lp~mD~eMr~La~~tl~KL~~MTDaef 57 (76)
T 2l7k_A 19 GKRGLMENINAA-LPFMDEDMRELAKRTLAKIAPLTENEY 57 (76)
T ss_dssp HHHHHHHHHHHS-TTTSCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHH-cCcccHHHHHHHHHHHHHHHhcCHHHH
Confidence 345566655432 666799999999999999986544333
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=30.48 E-value=21 Score=34.02 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=38.8
Q ss_pred HhcCccchHHHHHHHhh-CCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 110 IAQFEAYTRPFIQHLMA-RKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 110 va~~~~Y~~~li~~L~~-~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
++..++|-+++++.+++ +++.|-++.+|.=|+.++.++++..+..+
T Consensus 526 ~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L 572 (980)
T 3ibv_A 526 FDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV 572 (980)
T ss_dssp GGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC
T ss_pred HhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh
Confidence 44567889999999887 79999999999999999999987666543
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=30.02 E-value=1.5e+02 Score=24.50 Aligned_cols=140 Identities=15% Similarity=0.058 Sum_probs=70.8
Q ss_pred CchhhchhhHHHHHHhhccCccccHH-HHHH-HHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC------CCCcc-c
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEP-LVQQ-IAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN------PPYGI-D 86 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~-~~~~-l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~------~~~gi-~ 86 (161)
...|+-.||..++.++..-++ ..+. +++. ....|+-...-..+..+++.|..|+..+.....++ ...++ .
T Consensus 140 ~~~v~~~A~~aL~nLs~~~~~-~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~ 218 (354)
T 3nmw_A 140 SEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 218 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCCH-HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCH-HHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHH
Confidence 346788888888888764122 1222 2221 22222222233356678888888887766522010 11222 2
Q ss_pred cceeechhhh----hhhhhHHH---HHHHHHhcCccchHHH-----HHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 87 ILTRADYFSV----GNRQSAYL---DISVYIAQFEAYTRPF-----IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 87 il~~~Dy~sv----~~r~~a~l---~~~~~va~~~~Y~~~l-----i~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
++++...-+- ..++++-- .++..++.-+++++.+ +..|+. -+.+-+.++++-|+.+|.+|+..+|+.
T Consensus 219 Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~~~ 297 (354)
T 3nmw_A 219 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNPKD 297 (354)
T ss_dssp HHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHH-HHcCCChHHHHHHHHHHHHHhCCCHHH
Confidence 2232222111 12222221 1121122334444433 333443 245788999999999999999877776
Q ss_pred HHh
Q psy14303 155 FLT 157 (161)
Q Consensus 155 ~~~ 157 (161)
...
T Consensus 298 ~~~ 300 (354)
T 3nmw_A 298 QEA 300 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=29.03 E-value=1.9e+02 Score=24.20 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=69.6
Q ss_pred hhchhhHHHHHHhhccCccccH-HHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC---------CCCCCccccc
Q psy14303 19 IRDAACYVCWAFARAYDHHTLE-PLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG---------GNPPYGIDIL 88 (161)
Q Consensus 19 VRDAacf~~WslaR~y~~~~l~-~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~---------g~~~~gi~il 88 (161)
++-.|+-.+..++. ..+..+ ..++.=....++..+-..+..+++.|..||.-+....+ |.+|.=+.++
T Consensus 18 ~q~~A~~~L~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL 95 (457)
T 1xm9_A 18 YQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95 (457)
T ss_dssp HHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 44444444555543 333344 45554455566666777888999999999998876421 3333222333
Q ss_pred eeechhhhhhhhhHHHHHHHHHhcCccchHHH--------HHHHhh----------CCC-CCCCHHHHHHHHHHHhhhcc
Q psy14303 89 TRADYFSVGNRQSAYLDISVYIAQFEAYTRPF--------IQHLMA----------RKV-EHWDPEIRKLTAKTLPRLVP 149 (161)
Q Consensus 89 ~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~l--------i~~L~~----------~~l-~hwD~~iR~Laa~al~~L~~ 149 (161)
+. -.....+.++-..+. .++..++++..+ ++.|.. .+. .+-|.++.+-|+.+|.+|+.
T Consensus 96 ~~--~~~~~~~~~a~~aL~-nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 96 RR--TGNAEIQKQLTGLLW-NLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp TT--CCCHHHHHHHHHHHH-HHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred hh--CCCHHHHHHHHHHHH-HHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence 20 112233333322221 233445555433 332210 011 12578888899999999997
Q ss_pred cChHHHH
Q psy14303 150 LDREYFL 156 (161)
Q Consensus 150 ~~p~~~~ 156 (161)
. |+...
T Consensus 173 ~-~~~~~ 178 (457)
T 1xm9_A 173 A-DAGRQ 178 (457)
T ss_dssp S-HHHHH
T ss_pred C-HHHHH
Confidence 6 76543
No 66
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=28.49 E-value=75 Score=25.80 Aligned_cols=32 Identities=16% Similarity=0.031 Sum_probs=26.1
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303 123 HLMARKVEHWDPEIRKLTAKTLPRLVPLDREY 154 (161)
Q Consensus 123 ~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~ 154 (161)
-|+.+-+.+-|+.+|+.|+.+|+.++..+|+.
T Consensus 85 ~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~ 116 (296)
T 1xqr_A 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI 116 (296)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 34444467889999999999999999988865
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=28.25 E-value=1.4e+02 Score=29.20 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=55.7
Q ss_pred HHHHHHhhcCCchhhhhhHHHHHHH-hccCCCCCCCccccce-eechhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhh
Q psy14303 49 GLLVVTCYDKEINCRRAASAAFQEL-VGRQGGNPPYGIDILT-RADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMA 126 (161)
Q Consensus 49 ~Ll~~alFDrevniRRaAsAAlQE~-vGR~~g~~~~gi~il~-~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~ 126 (161)
.||-.+.-|.+=.+||+|.-|+=.. +|.. ..+| .++. +.+++.-..|..+-+-++..-+.-+ ....++ ++.
T Consensus 581 ~LL~~~~~d~~d~VRraAViaLGlI~~g~~-e~v~---rlv~~L~~~~d~~VR~gAalALGli~aGn~--~~~aid-~L~ 653 (963)
T 4ady_A 581 RLLHVAVSDSNDDVRRAAVIALGFVLLRDY-TTVP---RIVQLLSKSHNAHVRCGTAFALGIACAGKG--LQSAID-VLD 653 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-SSHH---HHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--CHHHHH-HHH
T ss_pred HHHHHhccCCcHHHHHHHHHHHHhhccCCH-HHHH---HHHHHHHhcCCHHHHHHHHHHHHHhccCCC--cHHHHH-HHH
Confidence 3666666788888888888887553 2322 3222 2222 3344445555555544444333322 244666 333
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcccCh
Q psy14303 127 RKVEHWDPEIRKLTAKTLPRLVPLDR 152 (161)
Q Consensus 127 ~~l~hwD~~iR~Laa~al~~L~~~~p 152 (161)
.-...-|..+|+-|+.||+.+.....
T Consensus 654 ~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 654 PLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 33467788888888888888875433
No 68
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=24.83 E-value=2e+02 Score=24.99 Aligned_cols=139 Identities=15% Similarity=0.045 Sum_probs=67.6
Q ss_pred chhhchhhHHHHHHhhccCccccHH-HHHH-HHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC------CCCcc-cc
Q psy14303 17 SYIRDAACYVCWAFARAYDHHTLEP-LVQQ-IAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN------PPYGI-DI 87 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~~~~l~~-~~~~-l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~------~~~gi-~i 87 (161)
..|+-.||..++.++-.-++ .-+. +++. ....|+-..+-..+..+++.|..|+..+.....++ ...|+ .+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~-~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L 335 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCH-HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCH-HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence 45677777777777653122 1222 2222 22223222223346678888877776655411000 11222 22
Q ss_pred ceeechhhh----hhhhhHHH---HHHHHHhcCccchHHHH-----HHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303 88 LTRADYFSV----GNRQSAYL---DISVYIAQFEAYTRPFI-----QHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155 (161)
Q Consensus 88 l~~~Dy~sv----~~r~~a~l---~~~~~va~~~~Y~~~li-----~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~ 155 (161)
+++...-.- ...+++-- .++..++.-+++++.++ ..|+. -+.+-+.++++-|+.+|.+|+..+|+..
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~-LL~~~~~~v~~~A~~aL~nLa~~~~~~~ 414 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNPKDQ 414 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH-HSSCSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH-HHcCCChHHHHHHHHHHHHHHcCCHHHH
Confidence 222222110 12232221 12222223445554443 33443 2467789999999999999998788765
Q ss_pred Hh
Q psy14303 156 LT 157 (161)
Q Consensus 156 ~~ 157 (161)
..
T Consensus 415 ~~ 416 (458)
T 3nmz_A 415 EA 416 (458)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=24.56 E-value=76 Score=21.58 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhhh
Q psy14303 130 EHWDPEIRKLTAKTLPRL 147 (161)
Q Consensus 130 ~hwD~~iR~Laa~al~~L 147 (161)
.+-|..+|.-++.+|++|
T Consensus 114 ~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 114 ETGTGFARKVAVNYLETH 131 (131)
T ss_dssp TSCCTHHHHHHHHHGGGC
T ss_pred hCCCHHHHHHHHHHHHhC
Confidence 467899999999999875
No 70
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=23.54 E-value=1.2e+02 Score=28.84 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCc-----------------hhhhhhHHHHHHHhccCC
Q psy14303 16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI-----------------NCRRAASAAFQELVGRQG 78 (161)
Q Consensus 16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrev-----------------niRRaAsAAlQE~vGR~~ 78 (161)
-..||||+|+.+=-+.+++.+ .+.|++..+...|+ ..|+..- .|+--=...|+.++.|..
T Consensus 714 ~~~irea~~~~~~r~i~~lg~-~~~p~lp~~i~~ll--~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if 790 (980)
T 3ibv_A 714 NEDIRGAVRFTSGRIINVVGP-DMLPKVPQLISILL--NSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIF 790 (980)
T ss_dssp SHHHHHHHHHHHHHHTTTTHH-HHTTTHHHHHHHHH--HHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999987777777755 36678888887777 3333220 033333334444444431
Q ss_pred CCCCCccccceeechhhhhh-hhhHHHHHHHHHhc------C-----ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhh
Q psy14303 79 GNPPYGIDILTRADYFSVGN-RQSAYLDISVYIAQ------F-----EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPR 146 (161)
Q Consensus 79 g~~~~gi~il~~~Dy~sv~~-r~~a~l~~~~~va~------~-----~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~ 146 (161)
+.+..+. +-.|-+.-.. .+++|...-..+.+ + ..+.+.++..|+.....+-|+.++++|-..|.+
T Consensus 791 ~~l~~~~---~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~ 867 (980)
T 3ibv_A 791 SSLSAAP---QGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSK 867 (980)
T ss_dssp HHTTC-------CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHH
T ss_pred HHhcCCC---CCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 1111111 1125444444 77788766544432 1 135667899999877778999999999999999
Q ss_pred hccc
Q psy14303 147 LVPL 150 (161)
Q Consensus 147 L~~~ 150 (161)
++..
T Consensus 868 ~v~~ 871 (980)
T 3ibv_A 868 MVSL 871 (980)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8876
No 71
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=23.10 E-value=1.5e+02 Score=28.03 Aligned_cols=113 Identities=7% Similarity=0.046 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC---CC--Cc-c-ccceeechhhhhhhhhHHHHHHHHHhcCc
Q psy14303 42 LVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN---PP--YG-I-DILTRADYFSVGNRQSAYLDISVYIAQFE 114 (161)
Q Consensus 42 ~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~---~~--~g-i-~il~~~Dy~sv~~r~~a~l~~~~~va~~~ 114 (161)
.++.-+..-+..-+++.+..+|++|..++..++.-- .. +- .| + -++.+.+--....++.|-.-++.-.+..+
T Consensus 619 Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~ 697 (810)
T 3now_A 619 IIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV 697 (810)
T ss_dssp HHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH
Confidence 344334455666678889999999999988665421 00 00 11 1 22233332223344443333322222111
Q ss_pred cchH------HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303 115 AYTR------PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL 156 (161)
Q Consensus 115 ~Y~~------~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~ 156 (161)
+-.+ ..+..|+. -+.+-|.++++-|+.+|.+|+...++...
T Consensus 698 ~~~~~ii~~~g~I~~Lv~-LL~s~d~~vq~~A~~aL~NL~~~s~e~~~ 744 (810)
T 3now_A 698 KCCEKILAIASWLDILHT-LIANPSPAVQHRGIVIILNMINAGEEIAK 744 (810)
T ss_dssp HHHHHHHTSTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH-HHCCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 1111 12223332 13578999999999999999987776543
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=20.30 E-value=90 Score=28.59 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=34.3
Q ss_pred chhhchhhHHHHHHhhccC--ccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC
Q psy14303 17 SYIRDAACYVCWAFARAYD--HHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ 77 (161)
Q Consensus 17 ~~VRDAacf~~WslaR~y~--~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~ 77 (161)
..||+++|+++=.++.-.. ++.+.+.+..|+..| | -.++.+|+.||+.+.-..
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l------~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL------N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH------H--SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh------C--hHHHHHHHHHHHHHHHHH
Confidence 4699999988888776554 333444444444333 5 457899999999887433
Done!