RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14303
(161 letters)
>gnl|CDD|227559 COG5234, CIN1, Beta-tubulin folding cofactor D [Posttranslational
modification, protein turnover, chaperones /
Cytoskeleton].
Length = 993
Score = 73.4 bits (180), Expect = 6e-16
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 2 KALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEIN 61
K L Y+ G G IRD++C+ W+F R Y +E L + LL +D E+N
Sbjct: 343 KGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELN 402
Query: 62 CRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFE--AYTRP 119
RRAA+AA E++GR + G+ +++ +Y SV + D+ +A F
Sbjct: 403 VRRAATAALFEVIGRH-ASIADGLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRSCED 461
Query: 120 FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDRE 153
Q ++ ++HWD ++++L+A +L +L+ +E
Sbjct: 462 VFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKE 495
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 29.2 bits (66), Expect = 0.95
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 130 EHWDPEIRKLTAKTLPRLVPLDREYF 155
HW+ +R L L L+ +D + F
Sbjct: 347 NHWNQSVRNLALNVLKLLMEIDPDLF 372
>gnl|CDD|237819 PRK14805, PRK14805, ornithine carbamoyltransferase; Provisional.
Length = 302
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 22 AACYVCWA---FARAYDHHTLEPLVQ 44
AA CWA AR + H T+E L +
Sbjct: 87 AANLSCWADAIVARVFSHSTIEQLAE 112
>gnl|CDD|115704 pfam07068, Gp23, Major capsid protein Gp23. This family contains a
number of major capsid Gp23 proteins approximately 500
residues long, from T4-like bacteriophages.
Length = 493
Score = 28.0 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 75 GRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYT 117
G GG ID + DYF+VG + + +D +Y A + A T
Sbjct: 407 GVLGGKYRVYIDQYAKQDYFTVGYKGANEMDAGIYYAPYVALT 449
>gnl|CDD|234642 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.
Length = 366
Score = 27.4 bits (62), Expect = 3.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 24 CYVCWAFARAYDHH 37
CY C ++RAY HH
Sbjct: 306 CYTCRNYSRAYLHH 319
>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase,
queuosine-34-forming. This tRNA-guanine
transglycosylase (tgt) catalyzes an exchange for the
guanine base at position 34 of many tRNAs; this
nucleotide is subsequently modified to queuosine. The
Archaea have a closely related enzyme that catalyzes a
base exchange for guanine at position 15 in some tRNAs,
a site that is subsequently converted to the
archaeal-specific modified base archaeosine
(7-formamidino-7-deazaguanosine), while Archaeoglobus
fulgidus has both enzymes [Protein synthesis, tRNA and
rRNA base modification].
Length = 368
Score = 27.0 bits (60), Expect = 4.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 20 RDAACYVCWAFARAYDHH 37
+ CY C ++RAY H
Sbjct: 298 EECDCYTCKNYSRAYLRH 315
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 26.9 bits (60), Expect = 5.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 5 VYDEPKGFCSVG--SYIRDAACYVCWAFARAYDHHTLEPL 42
+D P G + G S I D AC++ A A + L PL
Sbjct: 250 FFDRPYGRVTAGNSSQITDGACWLLLASEEAVKKYGLPPL 289
>gnl|CDD|223310 COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide transport and
metabolism].
Length = 412
Score = 26.9 bits (60), Expect = 5.5
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 15/53 (28%)
Query: 37 HTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG-----GNPPYG 84
H+LE V QI + + +E+ F++LV G+PP+G
Sbjct: 72 HSLE--VAQIGRSIA------RELGLDLDL--PFEDLVETACLAHDIGHPPFG 114
>gnl|CDD|233860 TIGR02421, QEGLA, conserved hypothetical protein. Members of this
family include a possible metal-binding motif HEXXXH
and, nearby, a perfectly conserved motif QEGLA. All
members belong to the Proteobacteria, including
Agrobacterium tumefaciens and several species of Vibrio
and Pseudomonas, and are found in only one copy per
chromosome (Vibrio vulnificus, with two chromosomes, has
two). The function is unknown.
Length = 366
Score = 26.9 bits (60), Expect = 5.8
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 113 FEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155
+ P + L K + +D I L + + +
Sbjct: 62 IDIIRDPPLGQLYREKQDEYDLVIDLLESIGTATFLYNSLRLY 104
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 26.7 bits (60), Expect = 6.2
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 63 RRAASAAFQELVGRQGGNPPYGI 85
R AA A E + P GI
Sbjct: 326 RIAAQHAVGEATAHLIEDIPTGI 348
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.436
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,447,515
Number of extensions: 768897
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 24
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)