RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14303
(161 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 6e-04
Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 86/206 (41%)
Query: 17 SYIRDAACYVCWAF---AR---AYDHHTLEPLVQQIA----QG----LLVVTCYDKE--- 59
S+ + F R AY + +L P + + + +G +L ++ +E
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 60 -----INCR----RAASAAFQELV-GRQ----GGNPP---YGIDILTRADYFSVGNRQS- 101
N + + LV G + G PP YG+++ R G QS
Sbjct: 351 DYVNKTNSHLPAGKQVEIS---LVNGAKNLVVSG-PPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 102 ------------AYLDISVYIAQFEAYTRPFIQHLMARKVEH-----------WDPE--- 135
+L ++ PF HL+ + ++ +
Sbjct: 407 IPFSERKLKFSNRFLPVAS----------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 136 -----------IRKLTAKTLPRLVPL 150
+R L+ R+V
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDC 482
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 31.5 bits (71), Expect = 0.094
Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 17/151 (11%)
Query: 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELV--- 74
+R A A + + + LV D R AA++ ++LV
Sbjct: 417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV----DHVYAIREAATSNLKKLVEKF 472
Query: 75 GRQGGNPPYGIDILTRADYFSVGNRQSA-----YLDISVYIAQFEAYTRPFIQHLMARKV 129
G++ + +L + + +R + L + P + + V
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV 532
Query: 130 EHWDPEIRKLTAKTLPRLVP-LDREYFLTEV 159
+R AK+L ++ P LD +EV
Sbjct: 533 ----ANVRFNVAKSLQKIGPILDNSTLQSEV 559
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc
genomics, joint center for structural genomics, JCSG;
1.90A {Thermotoga maritima}
Length = 381
Score = 29.4 bits (67), Expect = 0.49
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 24 CYVCWAFARAYDHH 37
CY C F R+Y HH
Sbjct: 313 CYTCKNFTRSYIHH 326
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase,
metal-binding, queuosine biosynthesis, tRNA processing;
HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A*
1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A*
1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A*
1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Length = 386
Score = 29.4 bits (67), Expect = 0.54
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 24 CYVCWAFARAYDHH 37
C VC ++RAY HH
Sbjct: 320 CAVCQKWSRAYIHH 333
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 28.3 bits (62), Expect = 1.4
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAA 66
RDAA + L+PLV Q L+ D + R A
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIELMKDPSVVVRDTA 428
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
riken structural genomics/proteomics initiative, RSGI;
2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Length = 582
Score = 28.1 bits (63), Expect = 1.6
Identities = 3/24 (12%), Positives = 7/24 (29%), Gaps = 5/24 (20%)
Query: 19 IRDA-----ACYVCWAFARAYDHH 37
+ + +C VC +
Sbjct: 271 LDELDYFPCSCPVCSKYTPQELRE 294
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A
2j0f_A
Length = 474
Score = 27.7 bits (62), Expect = 2.0
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 65 AASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHL 124
+A F+ ++ QG +P L RA + L + + A ++ +
Sbjct: 332 SALGRFERMLAAQGVDP-----GLARALCSGSPAERRQLLPRAREQEELLAPADGTVELV 386
Query: 125 MARKV 129
A +
Sbjct: 387 RALPL 391
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB:
1azy_A 1tpt_A 1otp_A
Length = 440
Score = 27.3 bits (61), Expect = 2.5
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 13/65 (20%)
Query: 65 AASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHL 124
A+ F +V Q G + YL ++ A T F+ +
Sbjct: 308 KAAEVFGRMVAAQKGPT-------------DFVENYAKYLPTAMLTKAVYADTEGFVSEM 354
Query: 125 MARKV 129
R +
Sbjct: 355 DTRAL 359
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 27.0 bits (58), Expect = 4.1
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 109 YIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
I + R ++ ++ + +E + E++ L K L LV +EY + +
Sbjct: 38 SIKLDDDSERKVVKMIL-KLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.436
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,638,016
Number of extensions: 152409
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 21
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)