RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14303
         (161 letters)



>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
           phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 588

 Score = 29.8 bits (65), Expect = 0.15
 Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 16/149 (10%)

Query: 10  KGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAA 69
           +        +R A        A        +  +  +          D     R AA++ 
Sbjct: 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW----LVDHVYAIREAATSN 464

Query: 70  FQELVGRQGGNPPYG--IDILTRADYFSVGNRQSAYLDISVYIA------QFEAYTRPFI 121
            ++LV + G    +   I  +           +   L     ++          +  P +
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV 524

Query: 122 QHLMARKVEHWDPEIRKLTAKTLPRLVPL 150
             +    V      +R   AK+L ++ P+
Sbjct: 525 LRMAGDPV----ANVRFNVAKSLQKIGPI 549


>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD)
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 113

 Score = 26.5 bits (58), Expect = 0.98
 Identities = 7/54 (12%), Positives = 15/54 (27%)

Query: 52  VVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLD 105
            V  Y +  +           +           +D+   A Y    N +  Y++
Sbjct: 41  AVLTYCQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVE 94


>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
           1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 1207

 Score = 26.6 bits (57), Expect = 1.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 133 DPEIRKLTAKTLPRLVPLDREYFLTEV 159
           + E++ L  K L  LV   +EY +  +
Sbjct: 58  NGEVQNLAVKCLGPLVSKVKEYQVETI 84


>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
           {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score = 26.3 bits (57), Expect = 2.1
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 24  CYVCWAFARAYDHHTL---EPLVQQIA 47
           C VC  ++RAY HH +   E L   + 
Sbjct: 310 CAVCQKWSRAYIHHLIRAGEILGAMLM 336


>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 125

 Score = 25.5 bits (56), Expect = 2.3
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 37 HTLEPLVQQIAQGLLVVTCYDKEINCRRAASAA 69
            LEP+ QQI+   LV+   + E++ +      
Sbjct: 11 SILEPVAQQISH--LVIMHEEGEVDGKAIPDLT 41


>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium
           acetobutylicum [TaxId: 1488]}
          Length = 129

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 120 FIQHLMARKV--EHWDPEIRKLTAKTLPRLVPLDREYFLTE 158
           F  H  A     E+ DP++ +     L ++ P   +Y   E
Sbjct: 38  FCPHTTAGITINENADPDVTRDILVNLDKVFPKVGDYKHVE 78


>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 25.5 bits (55), Expect = 3.7
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 65  AASAAFQELVGRQGGNP 81
           +A   F+ ++  QG +P
Sbjct: 238 SALGRFERMLAAQGVDP 254


>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD)
           {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 119

 Score = 24.2 bits (52), Expect = 5.4
 Identities = 8/54 (14%), Positives = 16/54 (29%)

Query: 52  VVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLD 105
            +  Y+               L+          +D+   A Y    N + +Y+D
Sbjct: 39  AILVYEPLEEQLLILQIEKHNLMHAADAQVLLALDVWEHAYYLQYKNDRGSYVD 92


>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 260

 Score = 24.7 bits (53), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 65  AASAAFQELVGRQGGNP 81
           AA AAF+  +  QGG+ 
Sbjct: 234 AAIAAFKTFLAAQGGDA 250


>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia
           coli [TaxId: 562]}
          Length = 265

 Score = 24.3 bits (52), Expect = 7.2
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 65  AASAAFQELVGRQGGNP 81
            A+  F  +V  Q G  
Sbjct: 238 KAAEVFGRMVAAQKGPT 254


>d1unfx2 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSOD)
           {Cowpea (Vigna unguiculata) [TaxId: 3917]}
          Length = 134

 Score = 23.9 bits (51), Expect = 7.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 78  GGNPPYGIDILTRADYFSVGNRQSAYLD 105
           G  P   ID+   A Y    NR+  Y+ 
Sbjct: 83  GYYPLLTIDVWEHAYYLDFQNRRPDYIS 110


>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger
          rhizome (Zingiber officinale) [TaxId: 94328]}
          Length = 216

 Score = 24.2 bits (51), Expect = 9.6
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 17 SYIRD-AACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINC 62
            +++   C  CWAF+       +E +  QI  G L+     + ++C
Sbjct: 14 VPVKNQGGCGSCWAFSTVA---AVEGI-NQIVTGDLISLSEQQLVDC 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 634,336
Number of extensions: 27851
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 21
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.4 bits)