Query psy14307
Match_columns 1235
No_of_seqs 157 out of 165
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 16:31:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gmua1 b.107.1.1 (A:1-70) Ure 10.7 77 0.0056 26.3 3.1 27 810-836 35-61 (70)
2 d1gmua1 b.107.1.1 (A:1-70) Ure 9.9 95 0.0069 25.7 3.3 29 785-813 34-62 (70)
3 d1eara1 b.107.1.1 (A:1-74) Ure 4.6 1.6E+02 0.012 24.0 2.1 30 809-838 39-68 (74)
4 d1upsa2 b.42.2.3 (A:290-420) G 4.6 2.5E+02 0.018 24.9 3.5 13 1033-1045 1-13 (131)
5 d1qxma1 b.42.2.1 (A:4-148) Hem 4.5 2.9E+02 0.021 24.7 4.0 31 1014-1044 35-65 (145)
6 d1eara1 b.107.1.1 (A:1-74) Ure 4.0 2.3E+02 0.017 23.1 2.5 12 801-812 55-66 (74)
7 d1upsa2 b.42.2.3 (A:290-420) G 3.4 7.3E+02 0.053 21.5 5.7 14 1024-1037 2-15 (131)
8 d1pfta_ g.41.3.1 (A:) Transcri 3.0 4.2E+02 0.031 20.3 3.1 22 791-812 16-37 (50)
9 d1q8ca_ a.79.1.2 (A:) Hypothet 2.9 2.9E+02 0.021 24.8 2.2 26 115-140 40-65 (140)
10 d1fyea_ c.23.16.4 (A:) Asparty 2.9 4.7E+02 0.034 24.8 4.1 40 782-821 187-227 (229)
No 1
>d1gmua1 b.107.1.1 (A:1-70) Urease metallochaperone UreE, N-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=10.75 E-value=77 Score=26.31 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=11.4
Q ss_pred cCCCceeecCCCCeeecCCCCeEeccC
Q psy14307 810 DKKEPILLDKKEPVLLDKKEPVLLDKK 836 (1235)
Q Consensus 810 ~~~ep~vl~~~~~Vvl~~k~pvvl~~k 836 (1235)
..|..+.++.-.+.+|+.|+.++.++|
T Consensus 35 ~~G~~~~l~LpRg~~L~~GD~L~~edG 61 (70)
T d1gmua1 35 NDGRDAGLLLPRGLLLRGGDVLSNEEG 61 (70)
T ss_dssp TTSCEEEEECCSSCCCCTTCEEECTTS
T ss_pred CCCCEEEEECCCCeEeCCCCEEEeCCC
Confidence 334444444444444444444444443
No 2
>d1gmua1 b.107.1.1 (A:1-70) Urease metallochaperone UreE, N-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=9.93 E-value=95 Score=25.74 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=14.9
Q ss_pred eccCCceeecCCcceeecCCCceeecCCC
Q psy14307 785 LDKKEHVLLDKKETVLLDKKEPVLLDKKE 813 (1235)
Q Consensus 785 ~~e~e~Vml~e~e~vv~~~~e~v~l~~~e 813 (1235)
++.|..++++=..+.++++|+.+.+++|.
T Consensus 34 ~~~G~~~~l~LpRg~~L~~GD~L~~edG~ 62 (70)
T d1gmua1 34 LNDGRDAGLLLPRGLLLRGGDVLSNEEGT 62 (70)
T ss_dssp CTTSCEEEEECCSSCCCCTTCEEECTTSC
T ss_pred CCCCCEEEEECCCCeEeCCCCEEEeCCCC
Confidence 34445555555555555555555555553
No 3
>d1eara1 b.107.1.1 (A:1-74) Urease metallochaperone UreE, N-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Probab=4.63 E-value=1.6e+02 Score=24.05 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=12.6
Q ss_pred ecCCCceeecCCCCeeecCCCCeEeccCCC
Q psy14307 809 LDKKEPILLDKKEPVLLDKKEPVLLDKKSP 838 (1235)
Q Consensus 809 l~~~ep~vl~~~~~Vvl~~k~pvvl~~k~~ 838 (1235)
.+.|.-+.+....+..|+.|+.+.++++..
T Consensus 39 t~~G~ei~i~L~r~~~L~~GDvL~~dd~~~ 68 (74)
T d1eara1 39 TENGTDIAIKLENSGTLRYGDVLYESDDTL 68 (74)
T ss_dssp CTTCCEEEEECSSCCCCCTTEEEEECSSEE
T ss_pred CCCCCEEEEECCCCcEecCCCEEEeCCCCE
Confidence 334444444443444444444444444433
No 4
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]}
Probab=4.62 E-value=2.5e+02 Score=24.86 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=7.7
Q ss_pred ccceecccCCCCc
Q psy14307 1033 NYYCHQNQSPNNY 1045 (1235)
Q Consensus 1033 n~yt~kn~~~~d~ 1045 (1235)
|.|+++|+.++-|
T Consensus 1 ~~Y~I~N~~sGk~ 13 (131)
T d1upsa2 1 NNYLIRNRQTGKF 13 (131)
T ss_dssp CEEEEEETTTCCE
T ss_pred CeEEEEEccCCcE
Confidence 3466666666663
No 5
>d1qxma1 b.42.2.1 (A:4-148) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]}
Probab=4.52 E-value=2.9e+02 Score=24.67 Aligned_cols=31 Identities=6% Similarity=0.014 Sum_probs=18.2
Q ss_pred ceeeccccccceEEeecccccceecccCCCC
Q psy14307 1014 YYYHQNLSLKYYCRRNLSQNYYCHQNQSPNN 1044 (1235)
Q Consensus 1014 ~Y~~qN~~~~~yT~knes~n~yt~kn~~~~d 1044 (1235)
|-++....+.|++..+...+.|..++...+.
T Consensus 35 w~~~g~~nQkW~~~~~~~~g~Y~I~~~~s~~ 65 (145)
T d1qxma1 35 WNKLSGANQKWRLIYDTNKQAYKIKVMDNTS 65 (145)
T ss_dssp EECCCCGGGCEEEEEETTTTEEEEEESSSSC
T ss_pred EcCCCChhheEEEEEcCCCCEEEEEECCCCC
Confidence 3445555666666666555666666665554
No 6
>d1eara1 b.107.1.1 (A:1-74) Urease metallochaperone UreE, N-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Probab=3.96 E-value=2.3e+02 Score=23.11 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=4.7
Q ss_pred ecCCCceeecCC
Q psy14307 801 LDKKEPVLLDKK 812 (1235)
Q Consensus 801 ~~~~e~v~l~~~ 812 (1235)
+.+|..+.+++|
T Consensus 55 L~~GDvL~~dd~ 66 (74)
T d1eara1 55 LRYGDVLYESDD 66 (74)
T ss_dssp CCTTEEEEECSS
T ss_pred ecCCCEEEeCCC
Confidence 333333333333
No 7
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]}
Probab=3.37 E-value=7.3e+02 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=7.8
Q ss_pred ceEEeeccccccee
Q psy14307 1024 YYCRRNLSQNYYCH 1037 (1235)
Q Consensus 1024 ~yT~knes~n~yt~ 1037 (1235)
.|+++|+.++-|-+
T Consensus 2 ~Y~I~N~~sGk~L~ 15 (131)
T d1upsa2 2 NYLIRNRQTGKFLY 15 (131)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eEEEEEccCCcEEE
Confidence 45666666655554
No 8
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=3.01 E-value=4.2e+02 Score=20.28 Aligned_cols=22 Identities=9% Similarity=0.230 Sum_probs=9.1
Q ss_pred eeecCCcceeecCCCceeecCC
Q psy14307 791 VLLDKKETVLLDKKEPVLLDKK 812 (1235)
Q Consensus 791 Vml~e~e~vv~~~~e~v~l~~~ 812 (1235)
++.|...|-+.=..||+|+++.
T Consensus 16 iv~D~~~Ge~vC~~CG~Viee~ 37 (50)
T d1pfta_ 16 LIYDPERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp EEEETTTTEEEESSSCCBCCCC
T ss_pred EEEECCCCeEecccCCcEeccc
Confidence 3333333444444444444443
No 9
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=2.91 E-value=2.9e+02 Score=24.81 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.3
Q ss_pred cccCCCchhHHHHHHHhhhHHHHHHH
Q psy14307 115 GQLNDNNKSVIKWFLENVECLLDYLV 140 (1235)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (1235)
.++||-.+-+||+|-++...-.+.|+
T Consensus 40 r~ln~wqk~ivk~fse~~~~f~~~ie 65 (140)
T d1q8ca_ 40 RQLNEWQKLIVKAFSENIFSFQKKIE 65 (140)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999998888887
No 10
>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}
Probab=2.89 E-value=4.7e+02 Score=24.84 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred ceeeccCCceeecCCcceeecCCCceeec-CCCceeecCCC
Q psy14307 782 PVLLDKKEHVLLDKKETVLLDKKEPVLLD-KKEPILLDKKE 821 (1235)
Q Consensus 782 ~vv~~e~e~Vml~e~e~vv~~~~e~v~l~-~~ep~vl~~~~ 821 (1235)
++-++|+.+|+++++...|+-++...++. ++++..++.|+
T Consensus 187 gigidE~tal~v~~~~~~v~G~~~~~~~~~~~~~~~~~~g~ 227 (229)
T d1fyea_ 187 VIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGEEAVALEAGH 227 (229)
T ss_dssp EEECCTTCEEEECSSCEEEESSSCEEEEETTCCCEEECTTC
T ss_pred EEEEECCEEEEEECCEEEEEecceEEEEECCCCceEeCCCC
Done!